RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy1868
         (108 letters)



>gnl|CDD|166449 PLN02808, PLN02808, alpha-galactosidase.
          Length = 386

 Score = 92.3 bits (229), Expect = 1e-23
 Identities = 42/91 (46%), Positives = 54/91 (59%), Gaps = 10/91 (10%)

Query: 18  LDNGVALTPPMGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINI 77
           LDNG+ LTP MGW +W  F+CN          I+E L +  AD +VS G AA+GY+YIN+
Sbjct: 24  LDNGLGLTPQMGWNSWNHFQCN----------INETLIKQTADAMVSSGLAALGYKYINL 73

Query: 78  DDCWLDKTRSFNGRLQADAKRFPRGIADLSN 108
           DDCW +  R   G L   A  FP GI  L++
Sbjct: 74  DDCWAELKRDSQGNLVPKASTFPSGIKALAD 104


>gnl|CDD|177874 PLN02229, PLN02229, alpha-galactosidase.
          Length = 427

 Score = 86.1 bits (213), Expect = 3e-21
 Identities = 39/91 (42%), Positives = 53/91 (58%), Gaps = 10/91 (10%)

Query: 18  LDNGVALTPPMGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINI 77
           L+NG+A TP MGW +W  F CN          I+E + +  AD +VS G A +GY ++NI
Sbjct: 55  LNNGLARTPQMGWNSWNFFACN----------INETVIKETADALVSTGLADLGYIHVNI 104

Query: 78  DDCWLDKTRSFNGRLQADAKRFPRGIADLSN 108
           DDCW +  R   G+L  D K FP GI  L++
Sbjct: 105 DDCWSNLKRDSKGQLVPDPKTFPSGIKLLAD 135


>gnl|CDD|178295 PLN02692, PLN02692, alpha-galactosidase.
          Length = 412

 Score = 82.4 bits (203), Expect = 8e-20
 Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 18  LDNGVALTPPMGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINI 77
           L NG+ +TPPMGW +W  F C  D          E++ +  AD +VS G + +GY Y+NI
Sbjct: 48  LANGLGITPPMGWNSWNHFSCKID----------EKMIKETADALVSTGLSKLGYTYVNI 97

Query: 78  DDCWLDKTRSFNGRLQADAKRFPRGIADLSN 108
           DDCW +  R   G L      FP GI  L++
Sbjct: 98  DDCWAEIARDEKGNLVPKKSTFPSGIKALAD 128


>gnl|CDD|216861 pfam02065, Melibiase, Melibiase. 
          Length = 395

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 18/88 (20%)

Query: 24  LTPPMGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWL- 82
              P+    WE    +           +E     +AD       A +G E   +DD W  
Sbjct: 39  KERPVLLNNWEATYFD----------FNEDKLLDLADEA-----ADLGIELFVLDDGWFG 83

Query: 83  --DKTRSFNGRLQADAKRFPRGIADLSN 108
             +   S  G    + ++FP G+  L++
Sbjct: 84  GRNDDNSSLGDWFVNEQKFPNGLKHLAD 111


>gnl|CDD|178487 PLN02899, PLN02899, alpha-galactosidase.
          Length = 633

 Score = 32.8 bits (75), Expect = 0.022
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 24/93 (25%)

Query: 21  GVALTPPMGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDC 80
            +A  PP GW +++ F             +SE  F   A+ +VS+     GYEY+ +D  
Sbjct: 26  QLASFPPRGWNSYDSF-SWI---------VSEEEFLQNAE-IVSQRLLPFGYEYVVVDYL 74

Query: 81  WLDK------TRSFN-------GRLQADAKRFP 100
           W  K        S         GR   D  R+P
Sbjct: 75  WYRKKVEGAYVDSLGFDVIDEWGRPIPDPGRWP 107


>gnl|CDD|178770 PLN03231, PLN03231, putative alpha-galactosidase; Provisional.
          Length = 357

 Score = 32.3 bits (73), Expect = 0.031
 Identities = 28/91 (30%), Positives = 36/91 (39%), Gaps = 27/91 (29%)

Query: 26  PPMGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDK- 84
           PP GW +++ F             ISE  F   A +V SE     GYEY+ ID  W  K 
Sbjct: 1   PPRGWNSYDSFSFT----------ISEEQFLENAKIV-SETLKPHGYEYVVIDYLWYRKL 49

Query: 85  ------TRSFN---------GRLQADAKRFP 100
                 T + +         GR   D KR+P
Sbjct: 50  KHGWFKTSAKSPGYDLIDKWGRPLPDPKRWP 80


>gnl|CDD|227934 COG5647, COG5647, Cullin, a subunit of E3 ubiquitin ligase
          [Posttranslational modification, protein turnover,
          chaperones].
          Length = 773

 Score = 25.9 bits (57), Expect = 4.9
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)

Query: 50 ISERLFRTMADLVVSEGYAAVGYEYINIDDCWLDKTRSFNGRL 92
          I ERL+ +MA L + E Y  + Y Y        +KTRS    L
Sbjct: 34 IFERLYDSMAILSLMEVYTKI-YNYC------TNKTRSLESDL 69


>gnl|CDD|151953 pfam11516, DUF3220, Protein of unknown function (DUF3120).  This
           family of proteins with unknown function appears to be
           restricted to Bordetella.
          Length = 106

 Score = 25.2 bits (54), Expect = 6.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 74  YINIDDCWLDKTRSFNGRLQADAKRFPRGIADL 106
           + N+D  WLD  R+ +  LQ D K + + + DL
Sbjct: 11  HANLDVKWLDGLRAGSMALQGDVKVWMQNLEDL 43


>gnl|CDD|236312 PRK08617, PRK08617, acetolactate synthase; Reviewed.
          Length = 552

 Score = 25.2 bits (56), Expect = 7.6
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 11/32 (34%)

Query: 59  ADLVVSEGYAAVGYE-----------YINIDD 79
           ADLV++ GY  + YE            I+ID 
Sbjct: 269 ADLVITIGYDPIEYEPRNWNSEGDATIIHIDV 300


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.137    0.444 

Gapped
Lambda     K      H
   0.267   0.0484    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,604,952
Number of extensions: 460282
Number of successful extensions: 379
Number of sequences better than 10.0: 1
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 16
Length of query: 108
Length of database: 10,937,602
Length adjustment: 73
Effective length of query: 35
Effective length of database: 7,699,760
Effective search space: 269491600
Effective search space used: 269491600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.8 bits)