RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1868
         (108 letters)



>d1r46a2 c.1.8.1 (A:32-323) Melibiase {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 292

 Score =  119 bits (299), Expect = 5e-35
 Identities = 56/91 (61%), Positives = 69/91 (75%)

Query: 18  LDNGVALTPPMGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINI 77
           LDNG+A TP MGWL WERF CN DC+ +P++CISE+LF  MA+L+VSEG+   GYEY+ I
Sbjct: 1   LDNGLARTPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCI 60

Query: 78  DDCWLDKTRSFNGRLQADAKRFPRGIADLSN 108
           DDCW+   R   GRLQAD +RFP GI  L+N
Sbjct: 61  DDCWMAPQRDSEGRLQADPQRFPHGIRQLAN 91


>d1ktba2 c.1.8.1 (A:1-293) Melibiase {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 293

 Score =  116 bits (292), Expect = 5e-34
 Identities = 55/91 (60%), Positives = 67/91 (73%)

Query: 18  LDNGVALTPPMGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINI 77
           L+NG+A TPPMGWLAWERFRCN +C+ DP  CISE LF  MAD +  +G+  +GY+YINI
Sbjct: 1   LENGLARTPPMGWLAWERFRCNVNCREDPRQCISEMLFMEMADRIAEDGWRELGYKYINI 60

Query: 78  DDCWLDKTRSFNGRLQADAKRFPRGIADLSN 108
           DDCW  K R   GRL  D +RFPRGI  L++
Sbjct: 61  DDCWAAKQRDAEGRLVPDPERFPRGIKALAD 91


>d1uasa2 c.1.8.1 (A:1-273) Melibiase {Rice (Oryza sativa) [TaxId:
           4530]}
          Length = 273

 Score = 94.5 bits (234), Expect = 1e-25
 Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 10/90 (11%)

Query: 19  DNGVALTPPMGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINID 78
           +NG+  TP MGW +W  F C           I+E++ R  AD +V+ G A +GY+Y+NID
Sbjct: 2   ENGLGRTPQMGWNSWNHFYCG----------INEQIIRETADALVNTGLAKLGYQYVNID 51

Query: 79  DCWLDKTRSFNGRLQADAKRFPRGIADLSN 108
           DCW + +R   G    + + FP GI  L++
Sbjct: 52  DCWAEYSRDSQGNFVPNRQTFPSGIKALAD 81


>d1szna2 c.1.8.1 (A:1-314) Melibiase {Trichoderma reesei [TaxId:
           51453]}
          Length = 314

 Score = 91.1 bits (225), Expect = 4e-24
 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 10/89 (11%)

Query: 19  DNGVALTPPMGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINID 78
           D      P +GW +W  + C+          I E  F + A+L+VS G    GY Y+NID
Sbjct: 5   DGVTGKVPSLGWNSWNAYHCD----------IDESKFLSAAELIVSSGLLDAGYNYVNID 54

Query: 79  DCWLDKTRSFNGRLQADAKRFPRGIADLS 107
           DCW  K    +G +  +A RFP GI  L+
Sbjct: 55  DCWSMKDGRVDGHIAPNATRFPDGIDGLA 83


>d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic
           domain {Thermotoga maritima [TaxId: 2336]}
          Length = 348

 Score = 49.0 bits (116), Expect = 9e-09
 Identities = 11/79 (13%), Positives = 19/79 (24%), Gaps = 19/79 (24%)

Query: 22  VALTPPMGWLAWERFRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCW 81
           V    P GW +W  +  +          ++                    +E   IDD +
Sbjct: 2   VPKHTPTGWCSWYHYFLD----------LTWEETLKNLK-----LAKNFPFEVFQIDDAY 46

Query: 82  LDKTRSFNGRLQADAKRFP 100
                 +          FP
Sbjct: 47  EKDIGDW----LVTRGDFP 61


>d1q59a_ f.1.4.1 (A:) Early antigen protein R {Epstein-Barr virus
           [TaxId: 10376]}
          Length = 172

 Score = 25.4 bits (55), Expect = 1.4
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 28  MGWLAWERFRCNTDCKND 45
           + W+AW    C T C N 
Sbjct: 102 LAWMAWCMHACRTLCCNQ 119


>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli
           [TaxId: 562]}
          Length = 180

 Score = 24.4 bits (52), Expect = 3.7
 Identities = 5/46 (10%), Positives = 12/46 (26%)

Query: 36  FRCNTDCKNDPENCISERLFRTMADLVVSEGYAAVGYEYINIDDCW 81
           F             + ER+  +   +V+S+    +           
Sbjct: 66  FLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRA 111


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.444 

Gapped
Lambda     K      H
   0.267   0.0688    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 427,004
Number of extensions: 17776
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 9
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)