BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1869
(205 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 208 bits (530), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 94/196 (47%), Positives = 127/196 (64%)
Query: 10 DFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVT 69
+F K EE +L FWK +IFQ+ ++ KG PRY+ Y+GPP A GLPH GH A + KD+
Sbjct: 9 NFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFP 68
Query: 70 RYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSS 129
RY G++ RR GWD HGLPVE E++KKLG+K ++ GI ++N CR+ V Y
Sbjct: 69 RYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEK 128
Query: 130 EWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPL 189
EWE +RI W+D ++ Y TL P Y+ESIWW L+++GL+YR KV+PY C TPL
Sbjct: 129 EWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPL 188
Query: 190 SNFESGQNYKEVVDPA 205
S+ E YKE+ DP+
Sbjct: 189 SSHEVALGYKEIQDPS 204
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 95/180 (52%), Gaps = 5/180 (2%)
Query: 14 EEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAH 73
+E I W + + + L+++KG + +DGPP+A G H GH L +KD + RY
Sbjct: 23 KEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKT 82
Query: 74 QNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEK 133
GF+ GWD HGLP+E + KK D KM A++ +C++ + +K
Sbjct: 83 MQGFYAPYVPGWDTHGLPIEQALTKK-----GVDRKKMSTAEFREKCKEFALEQIELQKK 137
Query: 134 VVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFE 193
+R+G DF++ Y TL P Y + +F E+ +KGL+Y+G K + +S + + L+ E
Sbjct: 138 DFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAE 197
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 71/172 (41%), Gaps = 18/172 (10%)
Query: 20 RFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHV 79
RFW+E F + G+ + P+ +G H GH+ + DV+ R+ G+ V
Sbjct: 15 RFWEEKG-FMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEV 73
Query: 80 ERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIG 139
GWD GLP E K G+ P D I Q R + + Y
Sbjct: 74 LHPMGWDAFGLPAE-NAALKFGVH-PKDWTYANIRQAKESLRLMGILY------------ 119
Query: 140 RWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSN 191
D+D + T P Y W+F ++W KGL YR ++ + C T L+N
Sbjct: 120 ---DWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLAN 168
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 71/172 (41%), Gaps = 18/172 (10%)
Query: 20 RFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHV 79
RFW+E F + G+ + P+ +G H GH+ + DV+ R+ G+ V
Sbjct: 15 RFWEEKG-FMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEV 73
Query: 80 ERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIG 139
GWD GLP E K G+ P D I Q R + + Y
Sbjct: 74 LHPMGWDAFGLPAE-NAALKFGVH-PKDWTYANIRQAKESLRLMGILY------------ 119
Query: 140 RWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSN 191
D+D + T P Y W+F ++W KGL YR ++ + C T L+N
Sbjct: 120 ---DWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLAN 168
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 58.9 bits (141), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 17/165 (10%)
Query: 37 GKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEI 96
GKP + + PP TG H GH L +++D + RY GF G D G+ + +
Sbjct: 32 GKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVV 91
Query: 97 DKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWE--------KVVKRIGRWIDFDNDY 148
++ L K G +++L K + R +W+ K +KR+G D+ +
Sbjct: 92 ERLL--------LKEGKTRHDLGREKFLERV-WQWKEESGGTILKQLKRLGASADWSREA 142
Query: 149 KTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFE 193
T+ ++ + FS +++GL YR +++ + C T LS+ E
Sbjct: 143 FTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCETTLSDLE 187
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 68/177 (38%), Gaps = 19/177 (10%)
Query: 15 EENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQ 74
E + W E F+ + + + K +Y P+ +G H GH+ I DV+ RY
Sbjct: 31 ESKVQLHWDEKRTFE--VTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRM 88
Query: 75 NGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKV 134
G +V + GWD GLP E K P + + L
Sbjct: 89 LGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQL---------------- 132
Query: 135 VKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSN 191
K +G D+ + T P Y F+EL+ KGLVY+ + + T L+N
Sbjct: 133 -KMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQTVLAN 188
>pdb|3ZIU|A Chain A, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
pdb|3ZIU|B Chain B, Crystal Structure Of Mycoplasma Mobile Leucyl-trna
Synthetase With Leu-ams In The Active Site
Length = 637
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 75/184 (40%), Gaps = 31/184 (16%)
Query: 22 WKEHEIFQECLKQSKGKPRYSFYDGPPFATGLP-HYGHILAGAIKDVVTRYAHQNGFHVE 80
W++ + F+ +K K ++ D P+ +G H GH D+++RY GF V
Sbjct: 22 WEKTKAFKTT---NKSKDKFYALDMFPYPSGSGLHVGHPEGYTATDIISRYKRLKGFDVL 78
Query: 81 RRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRK----IVMRYSSEWEKVVK 136
GWD GLP E QY L K ++ + + +K
Sbjct: 79 HPIGWDAFGLPAE---------------------QYALSSGKHPQPFTLKNIENFRRQLK 117
Query: 137 RIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLV-YRGVKVMPYSTACNTPLSNFESG 195
+G D++ + T P Y W+F +++ KGL R V V + T L+N E
Sbjct: 118 SLGFSFDYEKEVNTTDPSYYRWTQWIFKQIYKKGLAEIREVDV-NWCPGLGTVLANEEIV 176
Query: 196 QNYK 199
+N K
Sbjct: 177 ENDK 180
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 84/193 (43%), Gaps = 11/193 (5%)
Query: 9 IDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVV 68
++F EE + W E +IF+ ++ + ++ P+ +G H GH I DV+
Sbjct: 4 LNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVI 63
Query: 69 TRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPA------DVAKM--GIAQYNLEC 120
R+ G++V W G P+ I +++ + P DV K+ I +
Sbjct: 64 ARFKRMQGYNVLFPMAWHITGSPI-VGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDP 122
Query: 121 RKIVMRYSSEWEKVVKRIGRWIDFDNDYKT--LYPWYMESIWWVFSELWNKGLVYRGVKV 178
IV + ++ R G +D+ ++ T L+P + + I W F +L KG + +G
Sbjct: 123 INIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHR 182
Query: 179 MPYSTACNTPLSN 191
+ + TPL +
Sbjct: 183 VRWDPVVGTPLGD 195
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 84/193 (43%), Gaps = 11/193 (5%)
Query: 9 IDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVV 68
++F EE + W E +IF+ ++ + ++ P+ +G H GH I DV+
Sbjct: 4 LNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVI 63
Query: 69 TRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPA------DVAKM--GIAQYNLEC 120
R+ G++V W G P+ I +++ + P DV K+ I +
Sbjct: 64 ARFKRMQGYNVLFPMAWHITGSPI-VGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDP 122
Query: 121 RKIVMRYSSEWEKVVKRIGRWIDFDNDYKT--LYPWYMESIWWVFSELWNKGLVYRGVKV 178
IV + ++ R G +D+ ++ T L+P + + I W F +L KG + +G
Sbjct: 123 INIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHR 182
Query: 179 MPYSTACNTPLSN 191
+ + TPL +
Sbjct: 183 VRWDPVVGTPLGD 195
>pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CSX|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met)
pdb|2CT8|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
pdb|2CT8|B Chain B, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna
Synthetase Complexed With Trna(Met) And
Methionyl-Adenylate Anologue
Length = 497
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 61/158 (38%), Gaps = 21/158 (13%)
Query: 43 FYDGPP--FATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKL 100
FY P + +PH GH D + RY + V G D HGL ++
Sbjct: 7 FYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQ------- 59
Query: 101 GIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIW 160
++GI+ L R R+ WE + ++I +T P++++ +
Sbjct: 60 -----KKAEELGISPKELVDRN-AERFKKLWEFLKIEYTKFI------RTTDPYHVKFVQ 107
Query: 161 WVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNY 198
VF E + +G +Y G Y C S E +++
Sbjct: 108 KVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDH 145
>pdb|3H9C|A Chain A, Structure Of Methionyl-Trna Synthetase: Crystal Form 2
Length = 547
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 48 PFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPAD 107
P+A G H GH+L DV RY G V D HG P+ + ++LGI
Sbjct: 14 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKA-QQLGITPEQM 72
Query: 108 VAKMG 112
+ +M
Sbjct: 73 IGEMS 77
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 46 GPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGP 105
P+A G H GH+L DV RY G V D HG P+ + ++LGI
Sbjct: 25 ASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKA-QQLGITPE 83
Query: 106 ADVAKMG 112
+ +M
Sbjct: 84 QMIGEMS 90
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 48 PFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPAD 107
P+A G H GH+L DV RY G V D HG P+ + ++LGI
Sbjct: 15 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKA-QQLGITPEQM 73
Query: 108 VAKMG 112
+ +M
Sbjct: 74 IGEMS 78
>pdb|1P7P|A Chain A, Methionyl-trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphonate
pdb|1PFU|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine Phosphinate
pdb|1PFV|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Difluoromethionine
pdb|1PFW|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Trifluoromethionine
pdb|1PFY|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionyl Sulphamoyl Adenosine
pdb|1PG0|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methioninyl Adenylate
pdb|1PG2|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli Complexed
With Methionine And Adenosine
Length = 551
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 48 PFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPAD 107
P+A G H GH+L DV RY G V D HG P+ + ++LGI
Sbjct: 14 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKA-QQLGITPEQM 72
Query: 108 VAKMG 112
+ +M
Sbjct: 73 IGEMS 77
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 48 PFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPAD 107
P+A G H GH+L DV RY G V D HG P+ + ++LGI
Sbjct: 14 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKA-QQLGITPEQM 72
Query: 108 VAKMG 112
+ +M
Sbjct: 73 IGEMS 77
>pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi
Length = 722
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 40 RYSFYDGPPFATGLPHYGHILAGAI--KDVVTRYAHQNGFHVERRFGWDCHGLPVEF 94
RY P+A G H GH LAGA D+ RY G V G D HG P+ F
Sbjct: 3 RYMVTSALPYANGPIHAGH-LAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISF 58
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 69/170 (40%), Gaps = 29/170 (17%)
Query: 38 KPRYSFYDGPP--FATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFE 95
K + F+ P + PH GH+ + I DV+ RY G V G D HG V
Sbjct: 23 KKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKV--- 79
Query: 96 IDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDY--KTLYP 153
AK G++ M +++ K+ + +++D +Y +T P
Sbjct: 80 ---------AEAAAKQGVSP---------MDFTTSVSSEFKQCFQEMNYDMNYFIRTTNP 121
Query: 154 WYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVD 203
+ + + ++ +L KG +Y G YS + + F + QN + VD
Sbjct: 122 THEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDES----FLTAQNVADGVD 167
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 33.1 bits (74), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 35 SKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEF 94
S + +Y + G PH GH D + R+ NG V G D HG+ +
Sbjct: 21 SMSREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKM-L 79
Query: 95 EIDKKLGIKGPADVAKMGIAQY 116
+ +K GI P D+A + +
Sbjct: 80 QSARKEGIT-PRDLADRNTSAF 100
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 49 FATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPV 92
+ PH GH+ + I DV+ RY G V G D HG V
Sbjct: 19 YVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKV 62
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 49 FATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPV 92
+ PH GH+ + I DV+ RY G V G D HG V
Sbjct: 19 YVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKV 62
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 49 FATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPV 92
+ PH GH+ + I DV+ RY G V G D HG V
Sbjct: 19 YVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKV 62
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
And Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
And Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
And Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 49 FATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHG 89
+ G+PH GH D + R+ +G+ V G D HG
Sbjct: 22 YPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHG 62
>pdb|2DRQ|A Chain A, Crystal Structure Of Reducing-End-Xylose Releasing
Exo-Oligoxylanase D263g Mutant
Length = 396
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 10/60 (16%)
Query: 12 AKEEENILRFWKEH-EIFQECLK-----QSKGKPRYSFYDGPPFATGLPHYGHILAGAIK 65
A EE+ + FWKE E +E LK ++ P Y++YDG P YGH +G+ +
Sbjct: 211 ANEEDRV--FWKEAAEASREYLKIACHPETGLAPEYAYYDGTP--NDEKGYGHFFSGSYR 266
>pdb|2VWS|A Chain A, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWS|B Chain B, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWS|C Chain C, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWT|A Chain A, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
pdb|2VWT|B Chain B, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
pdb|2VWT|C Chain C, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
Length = 267
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 167 WNKGLVYRGVKVMPYSTACNTPLSNFESGQN 197
W V GV M YS A + L+ F+SG+N
Sbjct: 229 WGANFVAVGVDTMLYSDALDQRLAMFKSGKN 259
>pdb|3H2T|A Chain A, Crystal Structure Of Gene Product 6, Baseplate Protein Of
Bacteriophage T4
pdb|3H2T|B Chain B, Crystal Structure Of Gene Product 6, Baseplate Protein Of
Bacteriophage T4
pdb|3H3W|A Chain A, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped Baseplate
pdb|3H3W|B Chain B, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped Baseplate
pdb|3H3W|C Chain C, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped Baseplate
pdb|3H3W|D Chain D, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped Baseplate
pdb|3H3W|E Chain E, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped Baseplate
pdb|3H3W|F Chain F, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped Baseplate
pdb|3H3W|G Chain G, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped Baseplate
pdb|3H3W|H Chain H, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped Baseplate
pdb|3H3W|I Chain I, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped Baseplate
pdb|3H3W|J Chain J, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped Baseplate
pdb|3H3W|K Chain K, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped Baseplate
pdb|3H3W|L Chain L, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Dome-Shaped Baseplate
pdb|3H3Y|A Chain A, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped Baseplate
pdb|3H3Y|B Chain B, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped Baseplate
pdb|3H3Y|C Chain C, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped Baseplate
pdb|3H3Y|D Chain D, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped Baseplate
pdb|3H3Y|E Chain E, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped Baseplate
pdb|3H3Y|F Chain F, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped Baseplate
pdb|3H3Y|G Chain G, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped Baseplate
pdb|3H3Y|H Chain H, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped Baseplate
pdb|3H3Y|I Chain I, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped Baseplate
pdb|3H3Y|J Chain J, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped Baseplate
pdb|3H3Y|K Chain K, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped Baseplate
pdb|3H3Y|L Chain L, Fitting Of The Gp6 Crystal Structure Into 3d Cryo-Em
Reconstruction Of Bacteriophage T4 Star-Shaped Baseplate
Length = 335
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 102 IKGPADVAKMGIAQYNLECRKIVMR----YSSEWEKVV-KRIGRWIDFDNDYKTLYPWYM 156
I PADV IA+ NL K ++ YS + V+ R G I F+ND L P Y+
Sbjct: 262 INYPADVIYWNIAKINLTSEKFEVQTIELYSDPTDDVIFTRDGSLIVFEND---LRPQYL 318
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.465
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,293,308
Number of Sequences: 62578
Number of extensions: 316613
Number of successful extensions: 706
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 673
Number of HSP's gapped (non-prelim): 33
length of query: 205
length of database: 14,973,337
effective HSP length: 94
effective length of query: 111
effective length of database: 9,091,005
effective search space: 1009101555
effective search space used: 1009101555
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)