Query psy1869
Match_columns 205
No_of_seqs 113 out of 1166
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 18:23:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1869.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1869hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06039 ileS isoleucyl-tRNA s 100.0 1.3E-52 2.8E-57 402.9 20.5 205 1-205 3-207 (975)
2 PTZ00427 isoleucine-tRNA ligas 100.0 5.7E-52 1.2E-56 401.3 20.4 205 1-205 64-268 (1205)
3 PLN02882 aminoacyl-tRNA ligase 100.0 1.6E-50 3.5E-55 391.7 20.3 200 6-205 5-204 (1159)
4 COG0060 IleS Isoleucyl-tRNA sy 100.0 1.5E-50 3.2E-55 379.0 17.7 200 3-205 12-212 (933)
5 TIGR00392 ileS isoleucyl-tRNA 100.0 9.1E-50 2E-54 380.3 20.2 202 4-205 1-204 (861)
6 PRK13804 ileS isoleucyl-tRNA s 100.0 2.4E-49 5.2E-54 379.2 20.9 200 3-205 18-217 (961)
7 PRK13208 valS valyl-tRNA synth 100.0 9.7E-49 2.1E-53 370.7 20.5 196 1-204 2-197 (800)
8 PRK05743 ileS isoleucyl-tRNA s 100.0 1.3E-48 2.8E-53 373.0 20.1 197 3-205 13-209 (912)
9 PLN02381 valyl-tRNA synthetase 100.0 1.3E-48 2.7E-53 376.5 19.8 199 3-205 94-292 (1066)
10 TIGR00422 valS valyl-tRNA synt 100.0 2.4E-48 5.2E-53 370.4 19.8 196 5-205 1-196 (861)
11 PTZ00419 valyl-tRNA synthetase 100.0 4.7E-48 1E-52 372.5 20.1 200 4-205 23-224 (995)
12 PRK05729 valS valyl-tRNA synth 100.0 5.8E-48 1.2E-52 368.0 20.1 198 1-204 1-198 (874)
13 PRK14900 valS valyl-tRNA synth 100.0 3.4E-47 7.5E-52 366.7 20.3 198 4-204 14-211 (1052)
14 PF00133 tRNA-synt_1: tRNA syn 100.0 5.3E-48 1.1E-52 355.7 13.9 187 17-205 1-187 (601)
15 PLN02943 aminoacyl-tRNA ligase 100.0 4.2E-47 9.1E-52 363.7 19.2 196 4-205 56-251 (958)
16 COG0525 ValS Valyl-tRNA synthe 100.0 1.5E-46 3.3E-51 348.8 18.0 194 5-203 1-194 (877)
17 PLN02843 isoleucyl-tRNA synthe 100.0 4.9E-46 1.1E-50 356.6 19.4 192 8-205 2-194 (974)
18 COG0495 LeuS Leucyl-tRNA synth 100.0 4.5E-46 9.9E-51 346.0 15.9 174 6-197 2-175 (814)
19 PLN02563 aminoacyl-tRNA ligase 100.0 3.9E-45 8.5E-50 348.3 18.1 181 4-201 75-256 (963)
20 PLN02959 aminoacyl-tRNA ligase 100.0 3E-44 6.5E-49 346.9 19.5 199 4-204 8-267 (1084)
21 TIGR00396 leuS_bact leucyl-tRN 100.0 5.5E-44 1.2E-48 338.6 17.5 168 9-195 1-168 (842)
22 TIGR00395 leuS_arch leucyl-tRN 100.0 1.4E-43 3E-48 339.3 17.4 180 13-195 2-188 (938)
23 PRK00390 leuS leucyl-tRNA synt 100.0 2.4E-43 5.3E-48 333.3 17.8 171 6-196 2-172 (805)
24 KOG0434|consensus 100.0 4.4E-41 9.5E-46 301.3 15.0 204 2-205 1-204 (1070)
25 cd00817 ValRS_core catalytic c 100.0 1.5E-40 3.3E-45 291.7 16.7 155 39-194 1-155 (382)
26 KOG0432|consensus 100.0 1.3E-36 2.8E-41 278.4 15.1 199 4-205 41-239 (995)
27 KOG0435|consensus 100.0 4.2E-37 9.1E-42 275.4 9.7 166 10-195 31-196 (876)
28 cd00818 IleRS_core catalytic c 100.0 4.8E-35 1.1E-39 253.1 16.4 143 39-181 1-143 (338)
29 COG0143 MetG Methionyl-tRNA sy 100.0 6.3E-35 1.4E-39 263.7 13.8 140 38-196 4-143 (558)
30 PLN02224 methionine-tRNA ligas 100.0 1.9E-34 4.1E-39 264.8 14.1 153 24-195 51-206 (616)
31 PLN02610 probable methionyl-tR 100.0 3E-34 6.5E-39 270.1 14.3 141 36-195 14-155 (801)
32 cd00814 MetRS_core catalytic c 100.0 1.1E-33 2.4E-38 242.9 14.3 132 40-190 1-132 (319)
33 PF09334 tRNA-synt_1g: tRNA sy 100.0 3.6E-34 7.7E-39 251.7 10.4 136 41-195 1-136 (391)
34 PRK12268 methionyl-tRNA synthe 100.0 1.2E-33 2.6E-38 258.8 13.2 138 39-195 3-141 (556)
35 cd00668 Ile_Leu_Val_MetRS_core 100.0 9E-33 1.9E-37 236.6 16.5 137 40-180 1-137 (312)
36 PRK00133 metG methionyl-tRNA s 100.0 1E-32 2.2E-37 257.2 14.1 138 39-195 2-139 (673)
37 PRK11893 methionyl-tRNA synthe 100.0 1.2E-32 2.6E-37 249.7 14.1 138 39-195 1-138 (511)
38 PRK12267 methionyl-tRNA synthe 100.0 1.6E-32 3.4E-37 255.2 13.8 139 38-195 3-141 (648)
39 TIGR00398 metG methionyl-tRNA 100.0 2.3E-32 5.1E-37 249.0 13.4 136 41-195 1-136 (530)
40 cd00812 LeuRS_core catalytic c 100.0 7.1E-32 1.5E-36 231.3 13.3 131 40-187 1-131 (314)
41 PRK12300 leuS leucyl-tRNA synt 100.0 3.4E-32 7.3E-37 260.1 11.7 147 54-204 1-156 (897)
42 KOG0433|consensus 100.0 5.5E-29 1.2E-33 225.1 14.9 185 6-201 27-212 (937)
43 KOG0437|consensus 100.0 2.5E-28 5.4E-33 220.9 9.3 190 6-195 9-254 (1080)
44 KOG0436|consensus 99.9 1.1E-26 2.4E-31 199.7 12.2 142 35-195 35-176 (578)
45 cd00671 ArgRS_core catalytic c 99.9 1.8E-26 4E-31 187.6 11.9 130 40-191 1-130 (212)
46 PRK00260 cysS cysteinyl-tRNA s 99.9 7.9E-25 1.7E-29 196.5 12.4 126 39-185 22-148 (463)
47 TIGR00435 cysS cysteinyl-tRNA 99.9 1.7E-24 3.7E-29 194.2 12.5 127 40-186 21-148 (465)
48 PRK01611 argS arginyl-tRNA syn 99.9 7.9E-24 1.7E-28 192.0 13.8 129 37-184 109-238 (507)
49 PLN02946 cysteine-tRNA ligase 99.9 9.4E-24 2E-28 191.3 12.3 127 39-185 79-205 (557)
50 PRK12418 cysteinyl-tRNA synthe 99.9 1.5E-23 3.2E-28 183.1 12.8 128 40-187 9-140 (384)
51 TIGR03447 mycothiol_MshC cyste 99.9 2.2E-23 4.8E-28 183.0 12.1 127 40-186 36-166 (411)
52 PRK14536 cysS cysteinyl-tRNA s 99.9 8.4E-23 1.8E-27 183.1 13.2 128 38-185 21-158 (490)
53 PRK14535 cysS cysteinyl-tRNA s 99.9 1.7E-22 3.7E-27 184.9 13.1 129 38-186 246-375 (699)
54 PTZ00399 cysteinyl-tRNA-synthe 99.9 4.4E-22 9.4E-27 184.5 12.3 129 39-186 59-188 (651)
55 PRK14534 cysS cysteinyl-tRNA s 99.9 1.4E-21 3E-26 174.7 12.5 127 39-185 20-156 (481)
56 cd00672 CysRS_core catalytic c 99.8 1.1E-20 2.5E-25 153.6 10.1 93 37-150 19-112 (213)
57 COG0018 ArgS Arginyl-tRNA synt 99.8 4.9E-20 1.1E-24 168.2 14.1 167 10-180 89-292 (577)
58 PF01406 tRNA-synt_1e: tRNA sy 99.8 2.4E-20 5.2E-25 157.0 11.1 129 37-185 5-134 (300)
59 PF00750 tRNA-synt_1d: tRNA sy 99.8 7.3E-20 1.6E-24 159.4 11.4 161 19-184 3-202 (354)
60 TIGR00456 argS arginyl-tRNA sy 99.8 5.5E-19 1.2E-23 162.3 12.6 143 38-183 111-290 (566)
61 COG0215 CysS Cysteinyl-tRNA sy 99.8 8.9E-19 1.9E-23 154.5 11.3 127 40-186 22-149 (464)
62 KOG1247|consensus 99.8 9.6E-20 2.1E-24 156.9 4.8 142 36-196 11-153 (567)
63 PRK12451 arginyl-tRNA syntheta 99.8 2.6E-18 5.6E-23 157.6 13.5 143 37-183 111-288 (562)
64 PLN02286 arginine-tRNA ligase 99.8 1.2E-17 2.6E-22 153.5 13.9 141 37-182 115-291 (576)
65 cd00674 LysRS_core_class_I cat 99.7 6.3E-18 1.4E-22 146.5 8.9 140 38-186 18-176 (353)
66 cd00802 class_I_aaRS_core cata 99.7 1.9E-16 4.2E-21 121.0 8.0 59 43-102 1-59 (143)
67 KOG2007|consensus 99.6 2E-15 4.4E-20 132.9 11.0 135 37-187 52-188 (586)
68 PRK00750 lysK lysyl-tRNA synth 99.6 8.7E-16 1.9E-20 139.4 5.5 141 40-190 24-186 (510)
69 TIGR00467 lysS_arch lysyl-tRNA 99.4 2.5E-13 5.4E-18 123.1 4.6 140 39-190 18-179 (515)
70 cd09287 GluRS_non_core catalyt 99.3 1.6E-11 3.4E-16 101.3 7.9 95 43-174 3-97 (240)
71 PRK04156 gltX glutamyl-tRNA sy 99.2 3.7E-11 8.1E-16 109.7 9.6 130 8-174 60-197 (567)
72 TIGR00463 gltX_arch glutamyl-t 99.1 7.7E-10 1.7E-14 101.0 9.7 96 40-174 92-187 (560)
73 PRK12558 glutamyl-tRNA synthet 99.0 5.8E-10 1.3E-14 99.5 7.9 93 43-174 4-96 (445)
74 COG0008 GlnS Glutamyl- and glu 99.0 1.1E-09 2.4E-14 98.3 7.0 94 42-174 10-104 (472)
75 cd00807 GlnRS_core catalytic c 99.0 1.7E-09 3.8E-14 89.0 7.6 93 43-174 3-95 (238)
76 TIGR03838 queuosine_YadB gluta 99.0 2.4E-09 5.2E-14 90.0 8.6 89 46-173 5-94 (272)
77 PLN03233 putative glutamate-tR 99.0 1.5E-09 3.3E-14 98.2 7.4 95 41-174 11-105 (523)
78 PF00749 tRNA-synt_1c: tRNA sy 98.9 4.3E-09 9.4E-14 90.5 8.7 91 45-174 5-96 (314)
79 KOG4426|consensus 98.9 9.3E-09 2E-13 90.1 10.5 149 37-190 186-370 (656)
80 PTZ00402 glutamyl-tRNA synthet 98.9 2.6E-09 5.7E-14 97.8 7.3 94 41-173 52-146 (601)
81 PTZ00437 glutaminyl-tRNA synth 98.9 4.7E-09 1E-13 95.5 7.8 94 42-174 52-145 (574)
82 TIGR00440 glnS glutaminyl-tRNA 98.9 5.1E-09 1.1E-13 94.9 7.7 93 44-175 3-96 (522)
83 PRK05710 glutamyl-Q tRNA(Asp) 98.9 6.1E-09 1.3E-13 88.7 7.2 94 42-174 6-100 (299)
84 PLN02907 glutamate-tRNA ligase 98.9 6.8E-09 1.5E-13 97.8 8.2 96 40-174 212-307 (722)
85 PRK12410 glutamylglutaminyl-tR 98.8 6.2E-09 1.4E-13 92.6 7.2 88 47-173 5-92 (433)
86 PLN02859 glutamine-tRNA ligase 98.8 6.5E-09 1.4E-13 97.6 7.0 94 42-174 265-358 (788)
87 TIGR00464 gltX_bact glutamyl-t 98.8 1E-08 2.2E-13 92.6 7.5 91 44-173 4-95 (470)
88 PRK14895 gltX glutamyl-tRNA sy 98.8 1.2E-08 2.7E-13 92.2 7.8 93 43-174 6-99 (513)
89 PRK05347 glutaminyl-tRNA synth 98.8 2E-08 4.3E-13 91.4 7.7 95 41-174 29-124 (554)
90 cd00418 GlxRS_core catalytic c 98.7 2E-08 4.4E-13 82.5 6.6 88 44-170 4-92 (230)
91 PLN02627 glutamyl-tRNA synthet 98.7 2.3E-08 5E-13 90.8 7.1 94 42-174 46-148 (535)
92 PRK14703 glutaminyl-tRNA synth 98.7 3.5E-08 7.7E-13 93.2 7.7 95 41-174 31-126 (771)
93 PRK01406 gltX glutamyl-tRNA sy 98.7 3.4E-08 7.4E-13 89.3 7.0 94 42-174 5-106 (476)
94 cd00808 GluRS_core catalytic c 98.7 8.4E-08 1.8E-12 79.3 8.3 88 44-170 4-100 (239)
95 KOG1195|consensus 98.7 3.1E-07 6.7E-12 81.9 11.7 166 14-184 87-287 (567)
96 COG1384 LysS Lysyl-tRNA synthe 98.4 1.9E-06 4E-11 77.4 8.7 141 40-191 19-183 (521)
97 KOG1147|consensus 98.1 1.8E-05 4E-10 71.3 8.5 99 41-178 200-298 (712)
98 PF01921 tRNA-synt_1f: tRNA sy 98.1 4.7E-07 1E-11 78.6 -1.5 142 38-190 21-185 (360)
99 KOG1148|consensus 98.0 1.9E-05 4E-10 71.9 7.2 95 41-174 248-342 (764)
100 KOG1149|consensus 97.0 0.0017 3.7E-08 57.6 6.6 112 47-196 39-174 (524)
101 PLN02486 aminoacyl-tRNA ligase 94.1 0.45 9.7E-06 42.2 9.4 42 36-82 69-112 (383)
102 cd00806 TrpRS_core catalytic c 94.1 0.13 2.7E-06 43.7 5.7 34 48-84 6-39 (280)
103 PRK12285 tryptophanyl-tRNA syn 93.1 0.39 8.4E-06 42.4 7.3 43 37-84 63-105 (368)
104 PRK12284 tryptophanyl-tRNA syn 90.9 1.1 2.4E-05 40.3 7.7 34 48-83 9-42 (431)
105 cd00805 TyrRS_core catalytic c 90.3 0.22 4.7E-06 42.0 2.6 32 49-84 8-40 (269)
106 PF01927 Mut7-C: Mut7-C RNAse 88.9 0.044 9.6E-07 42.0 -2.5 111 68-189 12-134 (147)
107 cd00395 Tyr_Trp_RS_core cataly 87.9 0.49 1.1E-05 40.0 3.0 32 49-84 7-39 (273)
108 PF00579 tRNA-synt_1b: tRNA sy 87.9 0.44 9.5E-06 40.4 2.7 41 39-84 4-44 (292)
109 PRK13354 tyrosyl-tRNA syntheta 87.3 0.72 1.6E-05 41.3 3.9 43 37-84 30-73 (410)
110 TIGR00234 tyrS tyrosyl-tRNA sy 86.8 0.59 1.3E-05 41.4 3.0 40 40-84 30-70 (377)
111 PRK08560 tyrosyl-tRNA syntheta 86.3 0.82 1.8E-05 39.7 3.6 41 39-84 29-69 (329)
112 COG0162 TyrS Tyrosyl-tRNA synt 85.9 1.2 2.7E-05 39.7 4.5 40 40-84 32-72 (401)
113 PTZ00126 tyrosyl-tRNA syntheta 84.7 0.63 1.4E-05 41.3 2.1 41 39-83 65-105 (383)
114 PRK00927 tryptophanyl-tRNA syn 84.2 0.77 1.7E-05 39.9 2.4 33 48-84 8-40 (333)
115 PRK05912 tyrosyl-tRNA syntheta 83.8 1 2.2E-05 40.3 3.1 41 39-84 32-73 (408)
116 TIGR00233 trpS tryptophanyl-tR 82.8 0.94 2E-05 39.3 2.4 32 48-83 9-40 (328)
117 PRK12556 tryptophanyl-tRNA syn 81.1 1.5 3.2E-05 38.2 3.0 33 48-82 10-42 (332)
118 PLN02886 aminoacyl-tRNA ligase 80.9 1.2 2.6E-05 39.6 2.4 31 48-82 53-83 (389)
119 COG1656 Uncharacterized conser 80.1 3 6.6E-05 32.5 4.1 30 67-98 17-46 (165)
120 COG0180 TrpS Tryptophanyl-tRNA 79.1 1.1 2.3E-05 38.8 1.4 38 40-82 5-43 (314)
121 KOG2145|consensus 78.1 1.7 3.6E-05 37.2 2.3 32 33-64 78-109 (397)
122 PTZ00348 tyrosyl-tRNA syntheta 73.6 2.6 5.5E-05 40.3 2.5 40 39-82 31-70 (682)
123 PRK12282 tryptophanyl-tRNA syn 73.1 2.1 4.6E-05 37.2 1.7 30 49-82 10-39 (333)
124 PRK12283 tryptophanyl-tRNA syn 66.1 3.2 6.8E-05 37.1 1.3 30 48-82 9-39 (398)
125 COG3286 Uncharacterized protei 65.6 8 0.00017 31.0 3.3 86 63-178 89-178 (204)
126 PF10009 DUF2252: Uncharacteri 63.6 51 0.0011 29.3 8.5 94 49-169 45-153 (385)
127 COG3171 Uncharacterized protei 63.3 19 0.00041 26.4 4.6 58 129-186 20-79 (119)
128 COG2185 Sbm Methylmalonyl-CoA 59.2 18 0.0004 27.6 4.2 28 57-87 24-51 (143)
129 cd02156 nt_trans nucleotidyl t 51.2 9.4 0.0002 26.9 1.4 13 48-61 6-18 (105)
130 TIGR00640 acid_CoA_mut_C methy 51.2 42 0.00091 25.0 5.0 22 64-85 18-39 (132)
131 PF10007 DUF2250: Uncharacteri 50.6 17 0.00037 25.6 2.6 48 131-180 12-59 (92)
132 PF10137 TIR-like: Predicted n 49.1 16 0.00036 27.1 2.5 44 56-99 4-47 (125)
133 cd06545 GH18_3CO4_chitinase Th 49.0 84 0.0018 25.8 7.0 33 139-172 102-134 (253)
134 PF04320 DUF469: Protein with 48.2 27 0.00059 25.0 3.4 48 131-178 8-55 (101)
135 KOG2713|consensus 46.5 9.6 0.00021 32.6 1.0 20 47-66 19-38 (347)
136 PF06940 DUF1287: Domain of un 44.8 18 0.00038 28.2 2.1 31 47-80 22-52 (164)
137 PRK09620 hypothetical protein; 41.7 27 0.00058 28.6 2.9 48 38-85 3-52 (229)
138 smart00345 HTH_GNTR helix_turn 41.1 41 0.00089 20.3 3.2 26 156-181 34-59 (60)
139 cd02874 GH18_CFLE_spore_hydrol 40.3 1.6E+02 0.0035 24.8 7.6 46 127-172 91-139 (313)
140 cd07377 WHTH_GntR Winged helix 39.9 44 0.00095 20.6 3.2 26 156-181 39-64 (66)
141 TIGR01610 phage_O_Nterm phage 38.7 43 0.00094 23.3 3.2 30 155-184 60-89 (95)
142 PF15366 DUF4597: Domain of un 38.2 18 0.00039 22.9 1.1 12 43-54 25-36 (62)
143 PF14671 DSPn: Dual specificit 36.6 25 0.00053 26.8 1.8 43 43-87 33-78 (141)
144 TIGR00125 cyt_tran_rel cytidyl 35.7 19 0.00042 22.7 0.9 9 52-60 9-17 (66)
145 smart00550 Zalpha Z-DNA-bindin 35.6 64 0.0014 20.9 3.5 30 156-185 36-66 (68)
146 PF00392 GntR: Bacterial regul 35.4 56 0.0012 20.6 3.2 26 156-181 38-63 (64)
147 PF03500 Cellsynth_D: Cellulos 34.6 93 0.002 23.8 4.6 76 3-80 36-116 (144)
148 cd07388 MPP_Tt1561 Thermus the 34.6 43 0.00093 27.4 3.0 33 37-72 147-179 (224)
149 PF04127 DFP: DNA / pantothena 34.2 19 0.00042 28.5 0.9 50 38-87 3-54 (185)
150 PRK11702 hypothetical protein; 33.8 61 0.0013 23.5 3.4 46 132-177 15-61 (108)
151 cd00350 rubredoxin_like Rubred 33.7 32 0.00069 19.1 1.5 20 170-189 8-27 (33)
152 PRK14863 bifunctional regulato 32.7 1.1E+02 0.0023 25.9 5.3 44 127-172 88-136 (292)
153 KOG2805|consensus 31.9 70 0.0015 27.9 3.9 27 62-88 15-43 (377)
154 TIGR02647 DNA conserved hypoth 30.9 54 0.0012 22.2 2.5 23 156-178 33-55 (77)
155 COG0293 FtsJ 23S rRNA methylas 30.0 75 0.0016 25.8 3.7 45 40-84 113-161 (205)
156 PF13730 HTH_36: Helix-turn-he 29.8 58 0.0013 19.7 2.5 17 156-172 39-55 (55)
157 PF03765 CRAL_TRIO_N: CRAL/TRI 29.8 37 0.00079 20.9 1.5 15 66-80 32-46 (55)
158 COG1998 RPS31 Ribosomal protei 28.7 25 0.00054 21.8 0.6 15 179-193 19-35 (51)
159 PF10484 MRP-S23: Mitochondria 27.8 37 0.00081 25.4 1.4 23 162-184 14-36 (127)
160 TIGR03379 glycerol3P_GlpC glyc 27.7 2.8E+02 0.0061 24.3 7.3 30 64-93 179-208 (397)
161 PRK10079 phosphonate metabolis 27.4 69 0.0015 26.0 3.2 27 156-182 49-75 (241)
162 cd02072 Glm_B12_BD B12 binding 27.2 1E+02 0.0022 23.0 3.7 33 65-98 16-48 (128)
163 PF06969 HemN_C: HemN C-termin 26.5 75 0.0016 20.0 2.6 42 136-179 17-58 (66)
164 TIGR01501 MthylAspMutase methy 26.2 1E+02 0.0022 23.1 3.6 33 65-98 18-50 (134)
165 cd02872 GH18_chitolectin_chito 26.1 2.6E+02 0.0056 24.1 6.7 43 127-169 100-150 (362)
166 PF12802 MarR_2: MarR family; 25.6 1E+02 0.0022 18.9 3.1 21 156-176 35-55 (62)
167 PF00248 Aldo_ket_red: Aldo/ke 25.4 70 0.0015 26.3 2.9 45 127-173 84-132 (283)
168 TIGR02325 C_P_lyase_phnF phosp 25.4 79 0.0017 25.4 3.2 28 156-183 46-73 (238)
169 cd02070 corrinoid_protein_B12- 25.4 3.4E+02 0.0074 21.4 6.8 25 52-82 92-116 (201)
170 cd06544 GH18_narbonin Narbonin 25.4 1.9E+02 0.0041 24.0 5.5 49 126-175 100-151 (253)
171 PF00975 Thioesterase: Thioest 25.4 41 0.00089 26.5 1.4 31 56-86 71-101 (229)
172 PF08784 RPA_C: Replication pr 25.3 83 0.0018 21.9 2.9 19 156-174 79-97 (102)
173 PF08373 RAP: RAP domain; Int 25.1 26 0.00057 21.7 0.2 22 65-86 20-41 (58)
174 TIGR02404 trehalos_R_Bsub treh 24.7 84 0.0018 25.3 3.2 27 156-182 38-64 (233)
175 smart00576 BTP Bromodomain tra 24.7 2.2E+02 0.0047 18.9 6.1 23 60-82 4-26 (77)
176 PF00325 Crp: Bacterial regula 24.6 1.1E+02 0.0024 17.0 2.7 17 156-172 16-32 (32)
177 PRK11402 DNA-binding transcrip 24.6 82 0.0018 25.5 3.1 28 156-183 47-74 (241)
178 TIGR01293 Kv_beta voltage-depe 24.6 1.7E+02 0.0036 24.9 5.1 46 126-173 97-145 (317)
179 COG2759 MIS1 Formyltetrahydrof 24.4 5.7E+02 0.012 23.7 8.4 35 55-91 272-307 (554)
180 cd06660 Aldo_ket_red Aldo-keto 23.8 1.7E+02 0.0037 23.9 5.0 44 127-172 95-142 (285)
181 PF03033 Glyco_transf_28: Glyc 23.6 68 0.0015 23.1 2.2 25 55-82 8-32 (139)
182 PRK11172 dkgB 2,5-diketo-D-glu 23.4 1.8E+02 0.0038 24.0 4.9 45 127-173 75-124 (267)
183 PRK03903 transaldolase; Provis 23.2 3.4E+02 0.0074 23.0 6.6 43 124-168 230-272 (274)
184 PF14359 DUF4406: Domain of un 22.9 2E+02 0.0043 20.0 4.4 23 60-82 13-35 (92)
185 KOG2623|consensus 22.7 1.4E+02 0.0031 26.9 4.3 41 40-84 63-103 (467)
186 PRK14810 formamidopyrimidine-D 22.6 49 0.0011 27.8 1.4 13 175-187 260-272 (272)
187 PRK02261 methylaspartate mutas 22.6 74 0.0016 23.8 2.3 18 65-82 20-37 (137)
188 PF14582 Metallophos_3: Metall 22.5 86 0.0019 26.2 2.7 33 38-73 174-207 (255)
189 KOG4589|consensus 22.3 1.3E+02 0.0029 24.4 3.7 35 38-72 136-170 (232)
190 TIGR02018 his_ut_repres histid 21.8 1E+02 0.0022 24.8 3.1 28 156-183 39-66 (230)
191 PF09840 DUF2067: Uncharacteri 21.8 64 0.0014 25.8 1.9 23 155-177 152-174 (190)
192 PRK01103 formamidopyrimidine/5 21.7 53 0.0012 27.6 1.5 13 175-187 261-273 (274)
193 PF11344 DUF3146: Protein of u 21.5 58 0.0013 22.1 1.3 28 52-79 39-67 (80)
194 COG3355 Predicted transcriptio 21.3 1.1E+02 0.0023 22.9 2.8 25 155-179 55-79 (126)
195 PRK10625 tas putative aldo-ket 21.0 2E+02 0.0043 24.7 5.0 44 127-172 110-173 (346)
196 PF07106 TBPIP: Tat binding pr 20.8 1.4E+02 0.003 23.0 3.6 39 156-194 32-74 (169)
197 PF07394 DUF1501: Protein of u 20.8 1.5E+02 0.0033 25.9 4.3 35 62-96 231-267 (392)
198 PF13447 Multi-haem_cyto: Seve 20.7 2.7E+02 0.0059 23.5 5.5 22 154-175 241-262 (267)
199 PRK09764 DNA-binding transcrip 20.7 1.1E+02 0.0024 24.8 3.2 28 156-183 43-70 (240)
200 PF03920 TLE_N: Groucho/TLE N- 20.6 79 0.0017 23.8 2.0 26 48-73 5-30 (135)
201 COG2188 PhnF Transcriptional r 20.5 92 0.002 25.4 2.6 30 156-185 45-74 (236)
202 PRK14999 histidine utilization 20.5 1.1E+02 0.0024 24.7 3.1 27 156-182 50-76 (241)
203 cd06549 GH18_trifunctional GH1 20.5 2.3E+02 0.0049 23.9 5.1 46 127-172 92-140 (298)
204 COG0266 Nei Formamidopyrimidin 20.4 59 0.0013 27.6 1.4 14 174-187 260-273 (273)
205 PRK10445 endonuclease VIII; Pr 20.3 59 0.0013 27.2 1.4 13 175-187 251-263 (263)
206 PF13412 HTH_24: Winged helix- 20.2 1.3E+02 0.0029 17.5 2.7 17 156-172 31-47 (48)
No 1
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.3e-52 Score=402.93 Aligned_cols=205 Identities=53% Similarity=1.100 Sum_probs=196.9
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccc
Q psy1869 1 MVQPVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVE 80 (205)
Q Consensus 1 ~~~~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~ 80 (205)
||.+++.+||+.++|++|+++|++.++|++..+.+.++++|++++|||||||.||+||+++++++|+++||.||+||+|.
T Consensus 3 ~~~~~~~~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~ 82 (975)
T PRK06039 3 MYPEVDSQPDFPALEEEVLKFWKENDIFEKSIENREGGPEFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVE 82 (975)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHCCCcccCccccCCCCCEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCccc
Confidence 68889999999999999999999999999876655678899999999999999999999999999999999999999999
Q ss_pred cccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHH
Q psy1869 81 RRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIW 160 (205)
Q Consensus 81 ~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~ 160 (205)
+++||||||+||+..|++.+|+....++.++++++|++.|++++.++.+.|++++++||+|+||++.|.|+++.|.+.++
T Consensus 83 ~~~GwD~~GlPie~~vek~l~~~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~v~ 162 (975)
T PRK06039 83 RRAGWDTHGLPVELEVEKELGISGKKDIEEYGIEKFNEKCRESVLRYTDEWEEYTERLGRWVDFDNPYKTLDNEYMESVW 162 (975)
T ss_pred CcCCcCCCccHHHHHHHHHhCcccccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeecCCCcCcCCHHHHHHHH
Confidence 99999999999999999988987667788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCeeecCccccccCCCCCccCccccccccccccCCC
Q psy1869 161 WVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVDPA 205 (205)
Q Consensus 161 ~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~~~~~~~~~~s 205 (205)
++|.+|+++|+||++.++|+|||+|+|+||++||+++|+++.+||
T Consensus 163 ~~F~~l~~kGliyr~~~~v~wcp~~~T~Ls~~Ev~~~y~~~~~~~ 207 (975)
T PRK06039 163 WALKQLYDKGLLYKGYRVVPYCPRCETPLSNHEVAQGYKDVKDPS 207 (975)
T ss_pred HHHHHHHHCCCEEecceeeeecCCCCCCccHHHHhhcccccCCce
Confidence 999999999999999999999999999999999987899999886
No 2
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=5.7e-52 Score=401.29 Aligned_cols=205 Identities=59% Similarity=1.105 Sum_probs=197.1
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccc
Q psy1869 1 MVQPVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVE 80 (205)
Q Consensus 1 ~~~~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~ 80 (205)
||+++++++|+.++|++|+++|++.++|++..+.+.++++|++++||||+||.||+||+++.+++|+++||+||+||+|.
T Consensus 64 ~~~~~~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~ 143 (1205)
T PTZ00427 64 TFTGVSENPNIVEEEEKVLKYWKSIDAFNTSNKLAKNKKAYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVE 143 (1205)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeec
Confidence 57789999999999999999999999999887655677889999999999999999999999999999999999999999
Q ss_pred cccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHH
Q psy1869 81 RRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIW 160 (205)
Q Consensus 81 ~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~ 160 (205)
+++|||+||+||+..+++.+|+....++.++++++|++.|++++.++.+.+++++++||+|+||++.+.|+++.|.+.++
T Consensus 144 ~~~GwD~hGlPiE~~vEk~lg~~~k~~i~~~g~~~f~e~c~~~~~~~~~~~~~~~~rlG~~iDw~~~y~T~d~~~~~~v~ 223 (1205)
T PTZ00427 144 RKFGWDCHGLPIEYEIEKENNINKKEDILKMGIDVYNEKCRGIVLKYSNEWVKTVERIGRWIDFKNDYKTMDKTFMESVW 223 (1205)
T ss_pred cCCccCCCCcHHHHHHHHHhCCCcccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcEEecCCCcCcCCHHHHHHHH
Confidence 99999999999999999999987777778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCeeecCccccccCCCCCccCccccccccccccCCC
Q psy1869 161 WVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVDPA 205 (205)
Q Consensus 161 ~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~~~~~~~~~~s 205 (205)
++|.+|+++|+||++.++|+|||+|+|+||++||+++|+++.+||
T Consensus 224 ~~f~~L~ekGlIYr~~k~V~wcp~c~TaLS~~EV~~~ykd~~dps 268 (1205)
T PTZ00427 224 WVFSELYKNNYVYKSFKVMPYSCKCNTPISNFELNLNYKDTPDPS 268 (1205)
T ss_pred HHHHHHHHCCCEEecceeeccCCCCCCchhHHHhhcccccccCce
Confidence 999999999999999999999999999999999988899999986
No 3
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.6e-50 Score=391.65 Aligned_cols=200 Identities=69% Similarity=1.277 Sum_probs=192.8
Q ss_pred CCCCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCcccccccc
Q psy1869 6 PEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGW 85 (205)
Q Consensus 6 ~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~ 85 (205)
++.||+.++|++|+++|++.++|++..+.+.++++|++++||||+||.||+||+++++++|+++||.||+||+|.+++||
T Consensus 5 ~~~~~~~~~E~~~~~~W~e~~~f~~~~~~~~~~~~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~Gw 84 (1159)
T PLN02882 5 GKDFSFPKQEEKILSLWSEIDAFKTQLKRTEGLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGW 84 (1159)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCcc
Confidence 35799999999999999999999998766678889999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHH
Q psy1869 86 DCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSE 165 (205)
Q Consensus 86 d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~ 165 (205)
||||+||+..+++.+|++..+++.++++++|++.|++++.+|.+.+++++++||+|+||++.|.|+++.|.+.++++|.+
T Consensus 85 D~hGlPiE~~vek~lgi~~~~~i~~~g~~~f~~~c~~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~~~f~~ 164 (1159)
T PLN02882 85 DCHGLPVEYEIDKKLGIKRRDDVLKMGIDKYNEECRSIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVWWVFKQ 164 (1159)
T ss_pred CCCCcHHHHHHHHHcCCCCccchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHHHHHHH
Confidence 99999999999998899777788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCeeecCccccccCCCCCccCccccccccccccCCC
Q psy1869 166 LWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVDPA 205 (205)
Q Consensus 166 L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~~~~~~~~~~s 205 (205)
|+++|+||++.++++|||+|+|+||++|++++|+++++||
T Consensus 165 l~~kGliyr~~~~v~wcp~~~TaLs~~E~~~~Yk~~~~~s 204 (1159)
T PLN02882 165 LFEKGLVYKGFKVMPYSTACKTPLSNFEAGLNYKDVSDPA 204 (1159)
T ss_pred HHHCCCEEecceeEeecCCCCCCcchhhhhhhcccCCCcE
Confidence 9999999999999999999999999999999999999986
No 4
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-50 Score=378.95 Aligned_cols=200 Identities=42% Similarity=0.919 Sum_probs=194.2
Q ss_pred CCCCCCCCchHHHHHHHHHHHhcCcchhhhh-ccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCcccc
Q psy1869 3 QPVPEYIDFAKEEENILRFWKEHEIFQECLK-QSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVER 81 (205)
Q Consensus 3 ~~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~-~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~ 81 (205)
+.||++.||.++|+++++.|+++++|++..+ .++++++|++++||||+||.+|||||.|.|++|++.||..|+||+|.+
T Consensus 12 T~fpmr~~l~~~E~~i~~~W~e~~iy~k~~~~~~~g~~~FvfhDGPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~ 91 (933)
T COG0060 12 TDFPMRANLPKKEPKILKFWEENDIYEKIREERNKGKPKFVLHDGPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPY 91 (933)
T ss_pred CCCCccCChhhcCHHHHHHHHHhhHHHHHHHHHhCCCCcEEEeCCCCCCCCCcchhhhHHHhhhhhhhhhhcccCCcCCC
Confidence 4589999999999999999999999999994 778999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHH
Q psy1869 82 RFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWW 161 (205)
Q Consensus 82 ~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~ 161 (205)
.+||||||+||+.++++.+|. .+.++++.+.++|++.|+++|.++++.+++++++||+|+||+++|.|+++.|.+.+++
T Consensus 92 ~pGWDcHGLPIE~~vek~lg~-~k~~i~~~~~~efr~~Cr~~a~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~ 170 (933)
T COG0060 92 VPGWDCHGLPIELKVEKKLGI-GKKDIESFGVEEFREKCREFALEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWW 170 (933)
T ss_pred CCCCcCCCchHHHHHHHHhCC-CcchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHhheEeeccCCCeecCCHHHHHHHHH
Confidence 999999999999999999998 6777888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCeeecCccccccCCCCCccCccccccccccccCCC
Q psy1869 162 VFSELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVDPA 205 (205)
Q Consensus 162 ~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~~~~~~~~~~s 205 (205)
+|.++++||+||++.++|+||++|+|+||++|| +|.+++|||
T Consensus 171 ~f~~~~~kGllyrg~Kpv~wsp~c~TaLAeaEv--ey~d~~dpS 212 (933)
T COG0060 171 AFKELYEKGLLYRGYKPVPWSPRCETALAEAEV--EYGDVKDPS 212 (933)
T ss_pred HHHHHHHCCCeecCCeeeeecCCCCcchhhhhh--cccccCCce
Confidence 999999999999999999999999999999999 788899998
No 5
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=9.1e-50 Score=380.28 Aligned_cols=202 Identities=43% Similarity=0.873 Sum_probs=187.5
Q ss_pred CCCCCCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCcccccc
Q psy1869 4 PVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRF 83 (205)
Q Consensus 4 ~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~ 83 (205)
.||++||+.++|++|+++|++.++|+...+.+.++++|+|++|||||||.|||||++|++++|+++||.||+|++|++++
T Consensus 1 ~f~~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~ 80 (861)
T TIGR00392 1 KFPMRGNLSKREEKILAFWQENDIFEKVKKLNKGKPEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKP 80 (861)
T ss_pred CCCCCCChhHhhHHHHHHHHHCCchhhhhhccCCCCCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 47889999999999999999999999876555678899999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHH
Q psy1869 84 GWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVF 163 (205)
Q Consensus 84 G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~ 163 (205)
|||+||+||+.+|++.+|+.+...+...++++|++.|++++.++++.+++++++||+++||++.+.|+++.|.+.++++|
T Consensus 81 G~D~~Glpie~~~ek~l~~~~~~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~y~T~~p~y~~~~~~~f 160 (861)
T TIGR00392 81 GWDTHGLPIEHKVEKKLGISGKKEISSLEIEEFREKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLF 160 (861)
T ss_pred CcCCCccHHHHHHHHHhCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHHH
Confidence 99999999999999988886555666678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCeeecCccccccCCCCCccCcccccc--ccccccCCC
Q psy1869 164 SELWNKGLVYRGVKVMPYSTACNTPLSNFESGQ--NYKEVVDPA 205 (205)
Q Consensus 164 ~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~~--~~~~~~~~s 205 (205)
.+|+++|+||++.++|+|||.|+|+|||+||+. +|+++++||
T Consensus 161 ~~l~~~gliyr~~~~v~w~p~~~T~La~~Ev~~~~~~~~~~~~~ 204 (861)
T TIGR00392 161 KEAHEKGLLYRGLKPVYWSPRCRTALAEAEVEYKENYKDVKDPS 204 (861)
T ss_pred HHHHHCCCEeecceeeecCCCcCCcccHHHHhcccccccccCce
Confidence 999999999999999999999999999999953 134477765
No 6
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.4e-49 Score=379.24 Aligned_cols=200 Identities=32% Similarity=0.597 Sum_probs=187.8
Q ss_pred CCCCCCCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccc
Q psy1869 3 QPVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERR 82 (205)
Q Consensus 3 ~~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~ 82 (205)
+.||+++|+.++|++|+++|++.++|+...+.+.++++|++++|||||||.|||||++|++++|+++||.+|+||+|.++
T Consensus 18 t~f~m~~~~~~~E~~~~~~W~~~~~y~~~~~~~~~~~~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~ 97 (961)
T PRK13804 18 TAFPMRAGLPQKEPEIQARWEEIDLYKKLREQAKGRPKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYV 97 (961)
T ss_pred CCCCCCCChHHhHHHHHHHHHHCCCccccccccCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence 45899999999999999999999999998766678889999999999999999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHH
Q psy1869 83 FGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWV 162 (205)
Q Consensus 83 ~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~ 162 (205)
+||||||+||+.++++.++.++ ....++++++|++.|++++.++++.+++++++||+++||++.|.|+++.|.+.++++
T Consensus 98 pGwD~hGlPiE~~vek~~~~~~-~~~~~~~~~~f~~~c~~~a~~~i~~~~~~~~rlG~~~Dw~~~y~T~d~~y~~~~~~~ 176 (961)
T PRK13804 98 PGWDCHGLPIEWKIEEKYRAKG-KNKDEVPVAEFRKECREYALSWIDVQREEFKRLGVLGDWDNPYTTMDFHAEARIARE 176 (961)
T ss_pred CCcCCCCcHHHHHHHHhhhhcC-CChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCceecCCCCcCcCCHHHHHHHHHH
Confidence 9999999999999998864422 234568899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCeeecCccccccCCCCCccCccccccccccccCCC
Q psy1869 163 FSELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVDPA 205 (205)
Q Consensus 163 ~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~~~~~~~~~~s 205 (205)
|.+|+++|+||++.++|+|||.|+|+|||+|| +|+++++||
T Consensus 177 F~~l~~kGliyr~~kpV~Wcp~~~TaLa~~Ev--ey~~~~s~~ 217 (961)
T PRK13804 177 FGKFAAKGQLYRGSKPVMWSVVERTALAEAEI--EYHDIESDT 217 (961)
T ss_pred HHHHHHCCCEEeCCcceecCCCCCCCccchhc--ccccccCce
Confidence 99999999999999999999999999999999 799998876
No 7
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=9.7e-49 Score=370.69 Aligned_cols=196 Identities=27% Similarity=0.522 Sum_probs=184.5
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccc
Q psy1869 1 MVQPVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVE 80 (205)
Q Consensus 1 ~~~~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~ 80 (205)
||++++.+||+.++|++|+++|++.++|+...+ .++++|+|++|||||||.|||||+++++++|+++||+||+|++|+
T Consensus 2 ~~~~~~~~~~~~~~E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~ 79 (800)
T PRK13208 2 MMPELPKKYDPEELEEKWQKIWEEEGTYKFDPD--ERKPVYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVF 79 (800)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcccccc--cCCCcEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCccc
Confidence 688999999999999999999999999998654 357889999999999999999999999999999999999999999
Q ss_pred cccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHH
Q psy1869 81 RRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIW 160 (205)
Q Consensus 81 ~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~ 160 (205)
+++|||+||+||+.+|++.+|... .+++.++|.+.|+++++++.+.+++++++||+++||++++.|+++.|.+.++
T Consensus 80 ~~~G~D~~Glpie~~~ek~~g~~~----~~~~~~~f~~~~~~~~~~~~~~~~~~~~~lg~s~Dw~~~~~T~d~~~~~~v~ 155 (800)
T PRK13208 80 FPQGWDDNGLPTERKVEKYYGIRK----DDISREEFIELCRELTDEDEKKFRELWRRLGLSVDWSLEYQTISPEYRRISQ 155 (800)
T ss_pred CCCCcCCCcchHHHHHHHHhCCCc----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeccCCCcccCCHHHHHHHH
Confidence 999999999999999998778743 2478899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCeeecCccccccCCCCCccCccccccccccccCC
Q psy1869 161 WVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVDP 204 (205)
Q Consensus 161 ~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~~~~~~~~~~ 204 (205)
++|.+|+++|+||++.++|+|||+|+|+|||+|| +|+++.++
T Consensus 156 ~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lsd~ev--~~~~~~~~ 197 (800)
T PRK13208 156 KSFLDLYKKGLIYRAEAPVLWCPRCETAIAQAEV--EYREREGK 197 (800)
T ss_pred HHHHHHHHCCCeeecCcccccCCCCCCccchhhh--ccccccce
Confidence 9999999999999999999999999999999999 68887765
No 8
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.3e-48 Score=373.03 Aligned_cols=197 Identities=32% Similarity=0.655 Sum_probs=186.3
Q ss_pred CCCCCCCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccc
Q psy1869 3 QPVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERR 82 (205)
Q Consensus 3 ~~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~ 82 (205)
+.||+++|+.++|++|+++|++.++|++..+.+.++++|+|++||||+||.|||||++|++++|+++||.||+|++|.++
T Consensus 13 t~f~m~~~l~~~E~~~~~~W~~~~~~~~~~~~~~~~~~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~ 92 (912)
T PRK05743 13 TDFPMRANLPKREPEILKRWEENDLYQKIREANKGKPKFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYV 92 (912)
T ss_pred CCCCCCCChHHhhHHHHHHHHHCCCccccchhcCCCCcEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCC
Confidence 45899999999999999999999999987665677889999999999999999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHH
Q psy1869 83 FGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWV 162 (205)
Q Consensus 83 ~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~ 162 (205)
+|||+||+||+.+|++.+|.+ ..+.++++|++.|++++.++.+.+++++++||+++||++++.|+++.|.+.++++
T Consensus 93 ~G~D~~Glpie~~~ek~l~~~----~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~dw~~~~~T~~~~~~~~v~~~ 168 (912)
T PRK05743 93 PGWDCHGLPIELKVEKKLGKK----GKKLSAAEFRKKCREYALEQVDIQREDFKRLGVLGDWDNPYLTMDFKYEANIIRA 168 (912)
T ss_pred CCcCCCccHhHHHHHHHcCCc----cccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcCCCCHHHHHHHHHH
Confidence 999999999999999987742 2467899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCeeecCccccccCCCCCccCccccccccccccCCC
Q psy1869 163 FSELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVDPA 205 (205)
Q Consensus 163 ~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~~~~~~~~~~s 205 (205)
|.+|+++|+||++.++|+|||+|+|+|||+|| +|++..+||
T Consensus 169 f~~l~~~Gliy~~~~~v~w~p~~~TaLad~Ev--ey~~~~s~~ 209 (912)
T PRK05743 169 LGKMAKKGYLYKGLKPVYWCPDCGSALAEAEV--EYHDKTSPS 209 (912)
T ss_pred HHHHHHCCCEEecceeEecCCCcCCCchhhHh--hcccccCce
Confidence 99999999999999999999999999999999 799988875
No 9
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=1.3e-48 Score=376.47 Aligned_cols=199 Identities=21% Similarity=0.386 Sum_probs=186.2
Q ss_pred CCCCCCCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccc
Q psy1869 3 QPVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERR 82 (205)
Q Consensus 3 ~~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~ 82 (205)
.+++..|||.++|++|+++|++.++|++.. +.++++|+|++||||+||.|||||+++++++|+++||.||+|++|+++
T Consensus 94 ~~~~~~yd~~~iE~~w~~~W~~~~~f~~~~--~~~~~~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~ 171 (1066)
T PLN02381 94 SQMAKQYSPSAVEKSWYAWWEKSGYFGADA--KSSKPPFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWV 171 (1066)
T ss_pred hhcccCCCHHHHHHHHHHHHHHCCCccCCc--cCCCCcEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence 357889999999999999999999999764 356788999999999999999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHH
Q psy1869 83 FGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWV 162 (205)
Q Consensus 83 ~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~ 162 (205)
+|||+||+|++..+++.++.+......++++++|.+.|++++.++.+.|.+++++||+++||++.+.|+++.|.+.++++
T Consensus 172 ~G~D~~Glp~e~~vek~l~~~~~~~~~~~~re~f~~~~~~~~~~~~~~~~~q~~~lG~s~Dw~~~~~T~d~~~~~~v~~~ 251 (1066)
T PLN02381 172 PGVDHAGIATQVVVEKKLMRERHLTRHDIGREEFVSEVWKWKDEYGGTILNQLRRLGASLDWSRECFTMDEQRSKAVTEA 251 (1066)
T ss_pred CCCCCCcChHHHHHHHHhHhhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccCCHHHHHHHHHH
Confidence 99999999999999987754434445678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCeeecCccccccCCCCCccCccccccccccccCCC
Q psy1869 163 FSELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVDPA 205 (205)
Q Consensus 163 ~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~~~~~~~~~~s 205 (205)
|.+|+++|+||++.++|+|||+|+|+|||+|| +|+++.+||
T Consensus 252 F~~L~~~GlIyr~~~~VnWcP~~~TaLSd~EV--ey~d~~~~s 292 (1066)
T PLN02381 252 FVRLYKEGLIYRDIRLVNWDCTLRTAISDVEV--DYIDIKERT 292 (1066)
T ss_pred HHHHHHCCCEEeccccccCCCCCCCCccHHHh--hhhccccch
Confidence 99999999999999999999999999999999 799998775
No 10
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=2.4e-48 Score=370.41 Aligned_cols=196 Identities=26% Similarity=0.445 Sum_probs=184.1
Q ss_pred CCCCCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 5 VPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 5 ~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
++..|||.++|++|+++|++.++|++..+ .++++|+|++||||+||.|||||+++++++|+++||+||+|++|++++|
T Consensus 1 ~~~~y~~~~iE~~~~~~W~~~~~f~~~~~--~~~~~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G 78 (861)
T TIGR00422 1 MPKDYDPHEVEKKWYKKWEKSGFFKPDGN--SNKPPFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPG 78 (861)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcccCcc--cCCCeEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCC
Confidence 47789999999999999999999998753 4678899999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHH
Q psy1869 85 WDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFS 164 (205)
Q Consensus 85 ~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~ 164 (205)
||+||+||+..+++.++.++. ...++++++|.+.|+++++++.+.|++++++||+++||++.+.|+++.|.+.++++|.
T Consensus 79 ~D~~Glp~e~~vek~~~~~g~-~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~~~F~ 157 (861)
T TIGR00422 79 TDHAGIATQVKVEKKLGAEGK-TKHDLGREEFREKIWEWKEESGGTIKNQIKRLGASLDWSRERFTMDEGLSKAVKEAFV 157 (861)
T ss_pred cCcCCCcHHHHHHHHhcccCC-chhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeeeecCCCcCcCCHHHHHHHHHHHH
Confidence 999999999999998776433 3467899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCeeecCccccccCCCCCccCccccccccccccCCC
Q psy1869 165 ELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVDPA 205 (205)
Q Consensus 165 ~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~~~~~~~~~~s 205 (205)
+|+++|+||++.++|+|||+|+|+|||+|| +|++++.++
T Consensus 158 ~L~~~GlIy~~~~~v~wcp~~~t~lsd~Ev--~~~~~~~~~ 196 (861)
T TIGR00422 158 RLYEKGLIYRGEYLVNWDPKLNTAISDIEV--EYKEVKGKL 196 (861)
T ss_pred HHHHCCCeeecCcccccCCCCCCcchHhHh--hcccccceE
Confidence 999999999999999999999999999999 799988764
No 11
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=4.7e-48 Score=372.47 Aligned_cols=200 Identities=21% Similarity=0.367 Sum_probs=185.2
Q ss_pred CCCCCCCchHHHHHHHHHHHhcCcchhhh--hccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCcccc
Q psy1869 4 PVPEYIDFAKEEENILRFWKEHEIFQECL--KQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVER 81 (205)
Q Consensus 4 ~~~~~~~~~~~e~~~~~~w~~~~~~~~~~--~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~ 81 (205)
+++..||+.++|++|+++|+++++|+... ..+.++++|+|++|||||||.|||||+++++++|+++||+||+|++|++
T Consensus 23 ~~~~~yd~~~iE~~~~~~W~~~~~f~~~~~~~~~~~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~ 102 (995)
T PTZ00419 23 SMAASYDPKEVESGWYEWWEKSGFFKPAEDAKSLNSGKKFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLW 102 (995)
T ss_pred hcCCCCCHHHHHHHHHHHHHHCCCcccCccccccCCCCeEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccC
Confidence 47889999999999999999999999753 2345678899999999999999999999999999999999999999999
Q ss_pred ccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHH
Q psy1869 82 RFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWW 161 (205)
Q Consensus 82 ~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~ 161 (205)
++|||+||++++..+++.++........++++++|++.|++++.++.+.+++++++||+++||++.++|+++.|.+.+++
T Consensus 103 ~~G~D~~Gl~~~~~vE~~l~~~~~~~~~~~~~e~f~~~~~~w~~~~~~~~~~~~~~lG~~~DW~~~~~T~d~~~~~~v~~ 182 (995)
T PTZ00419 103 VPGTDHAGIATQVVVEKKLMKEENKTRHDLGREEFLKKVWEWKDKHGNNICNQLRRLGSSLDWSREVFTMDEQRSKAVKE 182 (995)
T ss_pred CCCCCCCchhhHHHHHHHHHHhcCCChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCceeeCCCCcCcCCHHHHHHHHH
Confidence 99999999999988888764433444567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCeeecCccccccCCCCCccCccccccccccccCCC
Q psy1869 162 VFSELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVDPA 205 (205)
Q Consensus 162 ~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~~~~~~~~~~s 205 (205)
+|.+|+++|+||++.++|+|||.|+|+|||+|| +|+++++||
T Consensus 183 ~F~~l~~~Gliyr~~~~V~wcp~~~Talsd~EV--e~~~~~~~~ 224 (995)
T PTZ00419 183 AFVRLYEDGLIYRDTRLVNWCCYLKTAISDIEV--EFEEIEKPT 224 (995)
T ss_pred HHHHHHHCCCEEecceeeecCCCCCCCCchhhc--ccccccccc
Confidence 999999999999999999999999999999999 799998876
No 12
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.8e-48 Score=368.01 Aligned_cols=198 Identities=24% Similarity=0.409 Sum_probs=182.7
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccc
Q psy1869 1 MVQPVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVE 80 (205)
Q Consensus 1 ~~~~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~ 80 (205)
|..+++..|||.++|++|+++|++.++|++..+ .+++|+|++||||+||.|||||+++++++|+++||.||+|++|+
T Consensus 1 ~~~~~~~~y~~~~~E~~~~~~W~~~~~f~~~~~---~~~~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl 77 (874)
T PRK05729 1 MMMELPKTYDPKEVEAKWYQKWEEKGYFKPDDN---SKKPFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTL 77 (874)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHCCCcccCcC---CCCCEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 445689999999999999999999999998643 35569999999999999999999999999999999999999999
Q ss_pred cccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHH
Q psy1869 81 RRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIW 160 (205)
Q Consensus 81 ~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~ 160 (205)
+++|||+||++++.++++.++.. +....++++++|++.|+++++++.+.|++++++||+++||++.++|+++.|.+.++
T Consensus 78 ~~~G~D~~Gi~~e~~ve~~l~~~-g~~~~~~~re~f~~~~~~w~~~~~~~~~~~~~~lG~s~Dw~r~~~T~d~~~~~~v~ 156 (874)
T PRK05729 78 WLPGTDHAGIATQMVVERQLAAE-GKSRHDLGREKFLEKVWEWKEESGGTITNQLRRLGASCDWSRERFTMDEGLSKAVR 156 (874)
T ss_pred CCCCCCccchhhHHHHHHHHHhc-CCChHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHH
Confidence 99999999999999988776443 23346789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCeeecCccccccCCCCCccCccccccccccccCC
Q psy1869 161 WVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVDP 204 (205)
Q Consensus 161 ~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~~~~~~~~~~ 204 (205)
++|.+|+++|+||++.++|+|||+|+|+|||+|| +|+++..+
T Consensus 157 ~~F~~L~~~GlIyr~~~~v~wcp~~~talsd~EV--~~~~~~~~ 198 (874)
T PRK05729 157 EVFVRLYEKGLIYRGKRLVNWDPKLQTALSDLEV--EYKEVKGK 198 (874)
T ss_pred HHHHHHHHCCCEeecCcccccCCCCCCcchhhhc--ccccccce
Confidence 9999999999999999999999999999999999 78887654
No 13
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.4e-47 Score=366.74 Aligned_cols=198 Identities=23% Similarity=0.388 Sum_probs=183.2
Q ss_pred CCCCCCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCcccccc
Q psy1869 4 PVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRF 83 (205)
Q Consensus 4 ~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~ 83 (205)
.++.+||+.++|++|+++|++.++|+.... +.++++|+|++||||+||.|||||+++++++|+++||+||+|++|++++
T Consensus 14 ~~~~~y~~~~iE~~~~~~W~~~~~f~~~~~-~~~~~~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~ 92 (1052)
T PRK14900 14 ELAKGYEHREVEARWYPFWQERGYFHGDEH-DRTRPPFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLP 92 (1052)
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCCccCCcc-cCCCCCEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCC
Confidence 468899999999999999999999997532 3567889999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHH
Q psy1869 84 GWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVF 163 (205)
Q Consensus 84 G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~ 163 (205)
|||+||+|++..+++.++........++++++|++.|+++++++.+.|.+++++||+++||++.++|+++.|.+.++++|
T Consensus 93 G~D~~Glp~e~~ve~~l~~~~~~~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F 172 (1052)
T PRK14900 93 GTDHAGIATQMIVEKELKKTEKKSRHDLGREAFLERVWAWKEQYGSRIGEQHKALGASLDWQRERFTMDEGLSRAVREVF 172 (1052)
T ss_pred CCCccchHHHHHHHHHhhhccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhchheecCCCcCcCCHHHHHHHHHHH
Confidence 99999999999998877654444556789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCeeecCccccccCCCCCccCccccccccccccCC
Q psy1869 164 SELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVDP 204 (205)
Q Consensus 164 ~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~~~~~~~~~~ 204 (205)
.+|+++|+||++.++|+|||.|+|+|||+|| +|+++..+
T Consensus 173 ~~L~~~Gliyr~~~~v~wcp~~~T~Lsd~Ev--~~~e~~~~ 211 (1052)
T PRK14900 173 VRLHEEGLIYREKKLINWCPDCRTALSDLEV--EHEEAHQG 211 (1052)
T ss_pred HHHHHCCCEEeccceeccCCCCCCCccHHHh--cccCCCCC
Confidence 9999999999999999999999999999999 68875443
No 14
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=5.3e-48 Score=355.72 Aligned_cols=187 Identities=41% Similarity=0.834 Sum_probs=171.2
Q ss_pred HHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHH
Q psy1869 17 NILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEI 96 (205)
Q Consensus 17 ~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a 96 (205)
||+++|++.++|+...+.++++++|++++||||+||.||+||+++++++|+++||.||+|++|++++|||+||+||+..+
T Consensus 1 k~~~~W~~~~~~~~~~~~~~~~~~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glpie~~v 80 (601)
T PF00133_consen 1 KWQKFWEENKLFEKQLEKNKNKPKFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLPIEAKV 80 (601)
T ss_dssp HHHHHHHHTTCCHHHHHCTTTSGEEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHHHHHHH
T ss_pred CHhHHHhhCCCcccccccCCCCCcEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcchhhhH
Confidence 79999999999999988888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecC
Q psy1869 97 DKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGV 176 (205)
Q Consensus 97 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~ 176 (205)
++.+|.+......++++++|++.|++++.++.+.+++++++||+++||++.|.|+++.|.+.++++|.+|+++|+||++.
T Consensus 81 ek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~y~~~v~~~F~~l~~kglIyr~~ 160 (601)
T PF00133_consen 81 EKKLGIKEKKDRKDLGREEFREECREWAEEFIEEQKEQFKRLGVSIDWDREYFTMDPEYEKFVWWQFKKLYEKGLIYRGK 160 (601)
T ss_dssp HHHTTTTSHHHCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHTT--SECTCEEETTSHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhhcccccccccccccccchhhhcchhhhhhhhhhhhhhheeeecccCCceEECCccHhHHHHHHHHHHHhcCcEEeeC
Confidence 99988876667788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCccCccccccccccccCCC
Q psy1869 177 KVMPYSTACNTPLSNFESGQNYKEVVDPA 205 (205)
Q Consensus 177 ~~v~~~~~~~~~ls~~ev~~~~~~~~~~s 205 (205)
++|+|||+|+|+|||+|| +|+++++||
T Consensus 161 ~pv~w~p~~~t~lsd~Ev--~~~~~~~~~ 187 (601)
T PF00133_consen 161 KPVNWCPSCQTALSDHEV--EYKEVKSPS 187 (601)
T ss_dssp EEEEEETTTTEEE-GGGE--EEEEEEEEE
T ss_pred CCCCcCcccccchhhhhc--ccccccCce
Confidence 999999999999999999 799987664
No 15
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=4.2e-47 Score=363.69 Aligned_cols=196 Identities=23% Similarity=0.415 Sum_probs=181.9
Q ss_pred CCCCCCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCcccccc
Q psy1869 4 PVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRF 83 (205)
Q Consensus 4 ~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~ 83 (205)
+++..||+.+ |++|+++|++.++|++..+ .++++|+|++|||||||.|||||+++++++|+++||.||+||+|++++
T Consensus 56 ~~~~~y~~~~-E~~~~~~W~~~~~f~~~~~--~~~~~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~ 132 (958)
T PLN02943 56 ETAKSFDFTS-EERIYNWWESQGYFKPNFD--RGGDPFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIP 132 (958)
T ss_pred ccCCCCChhh-hHHHHHHHHHCCCcccCcc--cCCCCEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCC
Confidence 4678999999 9999999999999998753 457789999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHH
Q psy1869 84 GWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVF 163 (205)
Q Consensus 84 G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~ 163 (205)
|||+||+|++..+++.++..+ ....++++++|++.|+++++++.+.|++++++||+++||++.++|+++.|.+.++++|
T Consensus 133 G~D~~Gl~~e~~vek~l~~~~-~~~~~~~re~f~~~~~~~~~~~~~~~~~~~~~lG~s~Dw~~~~~T~d~~~~~~v~~~F 211 (958)
T PLN02943 133 GTDHAGIATQLVVEKMLASEG-IKRTDLGRDEFTKRVWEWKEKYGGTITNQIKRLGASCDWSRERFTLDEQLSRAVVEAF 211 (958)
T ss_pred CCCcccchhHHHHHHHHHHcC-CChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcceecCCCcccCCHHHHHHHHHHH
Confidence 999999999999988774432 2236789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCeeecCccccccCCCCCccCccccccccccccCCC
Q psy1869 164 SELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVDPA 205 (205)
Q Consensus 164 ~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~~~~~~~~~~s 205 (205)
.+|+++|+||++.++|+|||.|+|+|||+|| +|+++.+++
T Consensus 212 ~~l~~~Gliyr~~~~V~wcp~~~Tals~~Ev--ey~e~~~~~ 251 (958)
T PLN02943 212 VRLHEKGLIYQGSYMVNWSPNLQTAVSDLEV--EYSEEPGTL 251 (958)
T ss_pred HHHHHCCCEEecCceeccCCCCCCCcCHHHh--hcccccccE
Confidence 9999999999999999999999999999999 799887653
No 16
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-46 Score=348.77 Aligned_cols=194 Identities=26% Similarity=0.487 Sum_probs=179.5
Q ss_pred CCCCCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 5 VPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 5 ~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
++..|||.++|++|+++|++.+.|++.... ..++|.|..||||+||.||||||++.++.|+++||.||+||+|++++|
T Consensus 1 ~~~~ydp~~iE~k~~~~W~~~~~f~~~~~~--~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG 78 (877)
T COG0525 1 LPKTYDPKEIEEKWYKKWEESGYFKPDPNE--DKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPG 78 (877)
T ss_pred CCCCCChhhhhHHHHHHHHhcCCccCCCCC--CCCCcEEeCCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCC
Confidence 467899999999999999999999877432 115699999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHH
Q psy1869 85 WDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFS 164 (205)
Q Consensus 85 ~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~ 164 (205)
+||+|.+++..+++++..+ .....++++++|.+.|.+|.+++...|.+++++||+++||++.++|+|+.+...|+++|.
T Consensus 79 ~DhAGIaTq~~VEk~l~~~-g~~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv 157 (877)
T COG0525 79 TDHAGIATQVVVEKQLAAE-GITRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFV 157 (877)
T ss_pred CCCCCchHHHHHHHHHHHc-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHHH
Confidence 9999999999999998433 233457899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCeeecCccccccCCCCCccCccccccccccccC
Q psy1869 165 ELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVD 203 (205)
Q Consensus 165 ~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~~~~~~~~~ 203 (205)
+|+++|+||++.++|+|||+|+|.|||.|| +|+|++.
T Consensus 158 ~Ly~~GlIYr~~~lVNWcP~~~TAiSd~EV--e~~e~~g 194 (877)
T COG0525 158 RLYEKGLIYRGERLVNWCPKCRTAISDIEV--EYKEVEG 194 (877)
T ss_pred HHHHCCceeecCCcccCCCccccchhhhhh--ccceeee
Confidence 999999999999999999999999999999 7998763
No 17
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=4.9e-46 Score=356.56 Aligned_cols=192 Identities=29% Similarity=0.557 Sum_probs=178.3
Q ss_pred CCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCC
Q psy1869 8 YIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDC 87 (205)
Q Consensus 8 ~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~ 87 (205)
+-|+.++|++|+++|++.++|++..+.+ .+++|+|++|||||||.|||||++|.+++|+++||+||+|++|.+++|||+
T Consensus 2 ~~~~~~~E~~~~~~W~~~~~y~~~~~~~-~~~~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~ 80 (974)
T PLN02843 2 RANSVTREPEIQKLWEENQVYKRVSDRN-NGESFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDC 80 (974)
T ss_pred CCChHHhhHHHHHHHHHCCCcccccccc-CCCCEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCC
Confidence 6789999999999999999999876533 356799999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHH
Q psy1869 88 HGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELW 167 (205)
Q Consensus 88 ~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~ 167 (205)
||+||+.++++.++. ....+.++++|++.|++++.++.+.+++++++||+++||++.|.|+++.|.+.++++|.+|+
T Consensus 81 hGlpie~~vek~l~~---~~~~~~~~~~f~~~c~~~~~~~~~~~~~~~~~lG~~~Dw~~~y~T~d~~~~~~v~~~f~~l~ 157 (974)
T PLN02843 81 HGLPIELKVLQSLDQ---EARKELTPIKLRAKAAKFAKKTVDTQRESFKRYGVWGDWENPYLTLDPEYEAAQIEVFGQMF 157 (974)
T ss_pred CCcHHHHHHHHHhch---hhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCCCccCCHHHHHHHHHHHHHHH
Confidence 999999999887653 23456789999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCeeecCccccccCCCCCccCcccccccccc-ccCCC
Q psy1869 168 NKGLVYRGVKVMPYSTACNTPLSNFESGQNYKE-VVDPA 205 (205)
Q Consensus 168 ~kG~iy~~~~~v~~~~~~~~~ls~~ev~~~~~~-~~~~s 205 (205)
++|+||++.++|+|||+|+|+|||+|| +|++ ..+||
T Consensus 158 ~~GlIyr~~kpV~Wcp~~~Talae~Ev--ey~e~~~~~s 194 (974)
T PLN02843 158 LNGYIYRGRKPVHWSPSSRTALAEAEL--EYPEGHVSKS 194 (974)
T ss_pred HCCCEEecceeeeecCCCCCcchHhHh--cccCCccCce
Confidence 999999999999999999999999999 7997 56765
No 18
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.5e-46 Score=345.99 Aligned_cols=174 Identities=28% Similarity=0.434 Sum_probs=163.5
Q ss_pred CCCCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCcccccccc
Q psy1869 6 PEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGW 85 (205)
Q Consensus 6 ~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~ 85 (205)
.++|++.+||+|||+.|++.++|+.....+.. +||++++++|||||.||+||+||++++|+++||.||+||+|++++||
T Consensus 2 ~~~y~~~~IE~KWQ~~W~e~~~Fe~~~d~~~~-~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGw 80 (814)
T COG0495 2 MSRYNPREIEEKWQKRWEEAKVFEADEDSDKP-EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGW 80 (814)
T ss_pred CcccchHHHHHHHHHHHHhcCCcccCCCCCCC-CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCcc
Confidence 35789999999999999999999987543222 79999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHH
Q psy1869 86 DCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSE 165 (205)
Q Consensus 86 d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~ 165 (205)
|++|+|++..|.+. |. .+..++.++++.++++|++||+++||++.+.|+|+.|.++++|+|.+
T Consensus 81 dafGlPae~~A~~~-~~----------------~P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~k 143 (814)
T COG0495 81 DAFGLPAENAAIKI-GT----------------DPAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLK 143 (814)
T ss_pred cccCchHHHHHHHh-CC----------------ChHHHHHHHHHHHHHHHHHhCCccccccceecCCccHHHHHHHHHHH
Confidence 99999999999986 65 57899999999999999999999999999999999999999999999
Q ss_pred HHHCCCeeecCccccccCCCCCccCccccccc
Q psy1869 166 LWNKGLVYRGVKVMPYSTACNTPLSNFESGQN 197 (205)
Q Consensus 166 L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~~~ 197 (205)
|.++|++|+++.+|.|||.|+|+|+++||..+
T Consensus 144 L~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g 175 (814)
T COG0495 144 LYEKGLAYRKEAPVNWCPVDGTVLANEQVIDG 175 (814)
T ss_pred HHHCCCEEeccccceeCCCcCCccccceeecC
Confidence 99999999999999999999999999999754
No 19
>PLN02563 aminoacyl-tRNA ligase
Probab=100.00 E-value=3.9e-45 Score=348.28 Aligned_cols=181 Identities=25% Similarity=0.454 Sum_probs=166.9
Q ss_pred CCCCCCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCc-CchhHHhHhHHHHHHHHHHHHCCCccccc
Q psy1869 4 PVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGL-PHYGHILAGAIKDVVTRYAHQNGFHVERR 82 (205)
Q Consensus 4 ~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~-LHiGH~r~~i~~DilaR~~r~~G~~V~~~ 82 (205)
.++..||+.+||++||++|++.++|+...+.+.++++|+++++||||||. |||||+++++++|+++||+||+|++|+++
T Consensus 75 ~~~~~y~~~~iE~kwq~~W~e~~~f~~~~~~~~~k~k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~ 154 (963)
T PLN02563 75 AAKRAYPFHEIEPKWQRYWEENRTFRTPDDVDTSKPKFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHP 154 (963)
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCccccccccCCCCCEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeeccc
Confidence 36788999999999999999999999764334678899999999999996 99999999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHH
Q psy1869 83 FGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWV 162 (205)
Q Consensus 83 ~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~ 162 (205)
+|||+||+|++.+|.+. |. .+..++.++++.+++++++||+++||++++.|+++.|.++++++
T Consensus 155 ~G~D~~GlPiE~~a~~~-g~----------------~p~~~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~ 217 (963)
T PLN02563 155 MGWDAFGLPAEQYAIET-GT----------------HPKITTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWI 217 (963)
T ss_pred ccccccCcHHHHHHHHc-CC----------------ChHHhHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHH
Confidence 99999999999988764 65 36778889999999999999999999999999999999999999
Q ss_pred HHHHHHCCCeeecCccccccCCCCCccCccccccccccc
Q psy1869 163 FSELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEV 201 (205)
Q Consensus 163 ~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~~~~~~~ 201 (205)
|.+|+++|+||++..+|+|||.|+|+||+.||+.++.++
T Consensus 218 F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~ 256 (963)
T PLN02563 218 FLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSER 256 (963)
T ss_pred HHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcC
Confidence 999999999999999999999999999999996554444
No 20
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=3e-44 Score=346.92 Aligned_cols=199 Identities=21% Similarity=0.349 Sum_probs=172.0
Q ss_pred CCCCCCCchHHHHHHHHHHHhcCcchhhhhccC--CCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCcccc
Q psy1869 4 PVPEYIDFAKEEENILRFWKEHEIFQECLKQSK--GKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVER 81 (205)
Q Consensus 4 ~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~--~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~ 81 (205)
..++|+++.++|++||++|++.++|+...+.++ ++++|+++.||||+||.|||||+++++++|+++||.||+|++|++
T Consensus 8 ~~~~r~~l~~iE~k~q~~W~~~~~fe~~~~~~~~~~~~kf~i~~ppPY~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlf 87 (1084)
T PLN02959 8 STARRDRLLEIEVAVQKWWEEEKVFEAEAGDEPPKPGEKFFGNFPYPYMNGLLHLGHAFSLSKLEFAAAYHRLRGANVLL 87 (1084)
T ss_pred CCchhcCHHHHHHHHHHHHHhcCCcccCcccccCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCccCC
Confidence 357899999999999999999999999875432 457899999999999999999999999999999999999999999
Q ss_pred ccccCCCCHHHHHHHHHH------hCCCCC------------------hhhhhcCHHHHHHHHHHHHHH-----------
Q psy1869 82 RFGWDCHGLPVEFEIDKK------LGIKGP------------------ADVAKMGIAQYNLECRKIVMR----------- 126 (205)
Q Consensus 82 ~~G~d~~G~~i~~~a~~~------~g~~~~------------------~~~~~~~~~~~~~~~~~~~~~----------- 126 (205)
++||||||+||+..|++. +|..+. ....+.+.++|+..|++++.+
T Consensus 88 p~G~d~tGlPIe~~aek~~~ei~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~k~~~k~~~~~~~~~~~ 167 (1084)
T PLN02959 88 PFAFHCTGMPIKASADKLAREIQQYGNPPVFPEEDEDEAAAVAAAKAEAEAAAAPPDKFKGKKSKAVAKSGTQKYQWEIM 167 (1084)
T ss_pred CCCcCCCCccHHHHHHHHHHHHHHcCCCcccccccccccccccccccccccccccHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 999999999999998764 243210 112234567788888777644
Q ss_pred ----------------------HHHHHHHHHHHhccccccCCceeccC--hhhHHHHHHHHHHHHHCCCeeecCcccccc
Q psy1869 127 ----------------------YSSEWEKVVKRIGRWIDFDNDYKTLY--PWYMESIWWVFSELWNKGLVYRGVKVMPYS 182 (205)
Q Consensus 127 ----------------------~~~~~~~~l~~lg~~i~~d~~~~T~~--~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~ 182 (205)
|.+.+++++++||+++||++.|.|++ +.|...++++|.+|+++|+||++.++|+||
T Consensus 168 ~~~~~~~~~i~~f~dp~~~~~yF~~~~~~~~k~lG~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rpv~wc 247 (1084)
T PLN02959 168 RSFGLPDSEIAKFQDPYHWLSYFPPLAKEDLKAFGLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRYTIYS 247 (1084)
T ss_pred hhcCCchhhhhhccCHHHHHHhccHHHHHHHHHhCceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCeeeeeC
Confidence 33778999999999999999999998 899999999999999999999999999999
Q ss_pred CCCCCccCccccccccccccCC
Q psy1869 183 TACNTPLSNFESGQNYKEVVDP 204 (205)
Q Consensus 183 ~~~~~~ls~~ev~~~~~~~~~~ 204 (205)
|+|+|+|||||+ +|.+...|
T Consensus 248 p~~~t~ladhe~--~~~e~~~~ 267 (1084)
T PLN02959 248 PLDGQPCADHDR--ASGEGVGP 267 (1084)
T ss_pred CCCCCCchhhHH--hcCCCCCc
Confidence 999999999999 56665444
No 21
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=100.00 E-value=5.5e-44 Score=338.55 Aligned_cols=168 Identities=30% Similarity=0.510 Sum_probs=159.2
Q ss_pred CCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCC
Q psy1869 9 IDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCH 88 (205)
Q Consensus 9 ~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~ 88 (205)
||+.++|++||++|++.++|+...+ .++++|+++++||||||.|||||+++++++|+++||+||+|++|++++|||+|
T Consensus 1 y~~~~iE~kwq~~W~~~~~f~~~~~--~~k~k~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~ 78 (842)
T TIGR00396 1 YNHIEIEEKWQQKWKENKVFKFTDD--SNKPKYYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAF 78 (842)
T ss_pred CCHHHHHHHHHHHHHhcCCcccCCC--CCCCCEEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCC
Confidence 7899999999999999999997643 56788999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHH
Q psy1869 89 GLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWN 168 (205)
Q Consensus 89 G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~ 168 (205)
|+||+.+|.+. |+ .+.+++.++.+.+++++++||+++||++++.|+++.|.+.++++|.+|++
T Consensus 79 Glpie~~a~~~-g~----------------~p~~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~ 141 (842)
T TIGR00396 79 GLPAENAAIKR-GI----------------HPAKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFE 141 (842)
T ss_pred ChHHHHHHHHc-CC----------------CHHHHHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHH
Confidence 99999999875 76 35688999999999999999999999999999999999999999999999
Q ss_pred CCCeeecCccccccCCCCCccCccccc
Q psy1869 169 KGLVYRGVKVMPYSTACNTPLSNFESG 195 (205)
Q Consensus 169 kG~iy~~~~~v~~~~~~~~~ls~~ev~ 195 (205)
+|+||++..+|+|||.|+|+||++||+
T Consensus 142 kGliy~~~~~v~wcp~~~t~La~~ev~ 168 (842)
T TIGR00396 142 KGLAYVKEADVNWCPNDGTVLANEQVD 168 (842)
T ss_pred CCCeEeeccceEEeCCCCCCccHHHHh
Confidence 999999999999999999999999994
No 22
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=1.4e-43 Score=339.34 Aligned_cols=180 Identities=22% Similarity=0.333 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHH
Q psy1869 13 KEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPV 92 (205)
Q Consensus 13 ~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i 92 (205)
+||++||++|++.++|+...+ ++++|+|+.|||||||.|||||+++++++|+++||.||+|++|++++|||+||+||
T Consensus 2 ~iE~k~~~~W~~~~~fe~~~~---~~~kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~G~d~~G~pi 78 (938)
T TIGR00395 2 AIEKKWQKRWEEAHIFEADPD---DREKFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPLGFHVTGTPI 78 (938)
T ss_pred hHHHHHHHHHHhCCCcccCCC---CCCceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCCccCCCCCch
Confidence 699999999999999998642 47889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC-----CChhhhhcCHHHHHHHH--HHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHH
Q psy1869 93 EFEIDKKLGIK-----GPADVAKMGIAQYNLEC--RKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSE 165 (205)
Q Consensus 93 ~~~a~~~~g~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~ 165 (205)
+..|++..... .-....+.+.++|.+.| .++++++...+++++++||+++||++.|.|+++.|.+.++++|.+
T Consensus 79 ~~~aek~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~lG~s~DW~r~~~T~dp~y~~~v~~~f~~ 158 (938)
T TIGR00395 79 LGLAELIKRRDELTIKNYTEVHAIPREELLKFTDPEYIVEYFSREAESACKSMGYSIDWRRSFKTTDPYYDRFIEWQMNK 158 (938)
T ss_pred HHHHHHhhhhhhhccccchhhccCCHHHHHhhcCHHHHHHHHHHHHHHHHHHhCceEECCCCccCCChhHHHHHHHHHHH
Confidence 99988742110 00123356788888876 899999999999999999999999999999999999999999999
Q ss_pred HHHCCCeeecCccccccCCCCCccCccccc
Q psy1869 166 LWNKGLVYRGVKVMPYSTACNTPLSNFESG 195 (205)
Q Consensus 166 L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~ 195 (205)
|+++|+||++.++++|||+|+|+|||+|++
T Consensus 159 L~e~G~iy~g~~~v~wcp~~~t~lsd~e~~ 188 (938)
T TIGR00395 159 LKELGLIVKGEHPVRYCPKDGNPVEDHDLL 188 (938)
T ss_pred HHHCCCEecCCeeEeecCCCCCCCchhHhc
Confidence 999999999999999999999999999995
No 23
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=100.00 E-value=2.4e-43 Score=333.27 Aligned_cols=171 Identities=27% Similarity=0.462 Sum_probs=160.5
Q ss_pred CCCCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCcccccccc
Q psy1869 6 PEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGW 85 (205)
Q Consensus 6 ~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~ 85 (205)
..+||+.++|++|+++|++.++|+...+ .+++|+++++||||||.|||||+++++++|+++||+||+|++|.+++||
T Consensus 2 ~~~y~~~~iE~~w~~~W~~~~~f~~~~~---~~~~~~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~ 78 (805)
T PRK00390 2 MERYNPKEIEKKWQKYWEENKTFKTTED---SSKKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGW 78 (805)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcccCcc---CCCCEEEEccCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCcc
Confidence 4689999999999999999999997643 3347999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHH
Q psy1869 86 DCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSE 165 (205)
Q Consensus 86 d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~ 165 (205)
|+||+||+.+|.+. |. .+.+++.++++.+++++++||+++||++++.|+++.|.+.++++|.+
T Consensus 79 D~~Glpie~~a~~~-g~----------------~~~~~~~~~~~~~~~~~~~lGi~~Dw~~~~~T~~~~~~~~v~~~f~~ 141 (805)
T PRK00390 79 DAFGLPAENAAIKT-GT----------------HPAEWTYENIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWIFLK 141 (805)
T ss_pred CCCCCHHHHHHHHc-CC----------------CHHHHHHHHHHHHHHHHHHhCCcccCCCCeecCCHHHHHHHHHHHHH
Confidence 99999999999876 66 36789999999999999999999999999999999999999999999
Q ss_pred HHHCCCeeecCccccccCCCCCccCcccccc
Q psy1869 166 LWNKGLVYRGVKVMPYSTACNTPLSNFESGQ 196 (205)
Q Consensus 166 L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~~ 196 (205)
|+++|+||++..+|+|||.|+|+||++||+.
T Consensus 142 L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~ 172 (805)
T PRK00390 142 LYEKGLAYRKESPVNWCPVDGTVLANEQVID 172 (805)
T ss_pred HHHCCCEEEecCEEEecCCcCCCCCHHHhhC
Confidence 9999999999999999999999999999964
No 24
>KOG0434|consensus
Probab=100.00 E-value=4.4e-41 Score=301.28 Aligned_cols=204 Identities=75% Similarity=1.347 Sum_probs=199.8
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCcccc
Q psy1869 2 VQPVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVER 81 (205)
Q Consensus 2 ~~~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~ 81 (205)
|.++|+-+|+.+-|+++.+.|.+.+.|+...+.++++++|.+++|||.+||.||-||+...+|+|+..||..+.||.|..
T Consensus 1 m~~~~~n~nfp~eEEkvle~W~e~~aF~~slk~sk~rp~ftFyDGPPFATGlPHyGHiLa~TIKDiVtRya~~~G~hVeR 80 (1070)
T KOG0434|consen 1 MSEVPENFNFPKEEEKVLEFWREIDAFHTSLKLSKGRPKFTFYDGPPFATGLPHYGHILASTIKDIVTRYATQTGHHVER 80 (1070)
T ss_pred CCcccccCCCchhHHHHHHHHHHhhHHHHHHHhhCCCCceeeccCCccccCCCccchhhhhhHHHHHHHHhhccccceee
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHH
Q psy1869 82 RFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWW 161 (205)
Q Consensus 82 ~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~ 161 (205)
.+||||||+|++..+++.||+.+++++.++|+++|...|+.++-+|...|+++..+||-||||++-|.|+.+.+.+.++|
T Consensus 81 RFGWD~HGlPVE~eIDKkLgI~g~~dV~kmGI~kYN~ECR~IVmrYssEWe~tv~RlGRWidF~ndYkTmyp~FMESvWw 160 (1070)
T KOG0434|consen 81 RFGWDTHGLPVEYEIDKKLGITGRDDVMKMGIDKYNNECRKIVMRYSSEWEKTVERLGRWIDFDNDYKTLYPSFMESVWW 160 (1070)
T ss_pred ecccccCCCccceeechhcCCCCHHHHHHHhHHhHhHHHHHHHHHHHHHHHHHHHhhccceeccCCcceecHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCeeecCccccccCCCCCccCccccccccccccCCC
Q psy1869 162 VFSELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVDPA 205 (205)
Q Consensus 162 ~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~~~~~~~~~~s 205 (205)
+|.+|++||++|++-+.++||..|.|+||+-|..|+||++.+||
T Consensus 161 vFkeL~~kglVYRG~kVMP~STac~TPLSNFEa~QNYKdV~DPa 204 (1070)
T KOG0434|consen 161 VFKELHEKGLVYRGFKVMPYSTACTTPLSNFEAQQNYKDVPDPA 204 (1070)
T ss_pred HHHHHHhcCceecceeeeccccccCCcccchhcccCcccCCCCe
Confidence 99999999999999999999999999999999999999999996
No 25
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=1.5e-40 Score=291.67 Aligned_cols=155 Identities=27% Similarity=0.508 Sum_probs=147.4
Q ss_pred CCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHH
Q psy1869 39 PRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNL 118 (205)
Q Consensus 39 ~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~ 118 (205)
++|+|++|||||||.|||||+++++++|+++||+|++|++|.+++|+|+||+||+..|++.++.+ ..++.+.++++|.+
T Consensus 1 ~~f~i~~~pPy~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~pie~~a~k~~~~~-~~~~~~~~~~~~~~ 79 (382)
T cd00817 1 PVFVIDTPPPNVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEKKLGIE-GKTRHDLGREEFLE 79 (382)
T ss_pred CcEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCChHHHHHHHHhccc-ccchhcCCHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999886653 33555788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCCCCccCcccc
Q psy1869 119 ECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFES 194 (205)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev 194 (205)
.|+++++++.+.+++++++||+++||+.++.|+++.|.+.++++|.+|.++|+||++..+++||+.|+|+||++||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~ev 155 (382)
T cd00817 80 KCWEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEV 155 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997
No 26
>KOG0432|consensus
Probab=100.00 E-value=1.3e-36 Score=278.38 Aligned_cols=199 Identities=24% Similarity=0.393 Sum_probs=186.8
Q ss_pred CCCCCCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCcccccc
Q psy1869 4 PVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRF 83 (205)
Q Consensus 4 ~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~ 83 (205)
+++..|+|..+|..|..||++.+.|++... ...+..|.++.||||+||.||||||.+.++.|+++||.||.|+.|.++.
T Consensus 41 ~~~~~y~p~~vE~~wy~ww~k~g~fkp~~~-~~~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~P 119 (995)
T KOG0432|consen 41 PLPAAYSPAYVESAWYKWWEKQGFFKPEYG-PNPGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVP 119 (995)
T ss_pred cccccCCccchHHHHHHHHHHcCCCCcccC-CCCCCcceeecCCCCcccccchhHHHHHHHHHHHHHHHHhcCCeeeecC
Confidence 356789999999999999999999998876 4567789999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHH
Q psy1869 84 GWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVF 163 (205)
Q Consensus 84 G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~ 163 (205)
|+|++|..+...+++.+..+......++++++|.+.+++|.+++...|.++|++||.+.||++.++|+|+.....|.++|
T Consensus 120 G~DHAGIATQ~VVEK~l~~~~~~~Rh~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~eAF 199 (995)
T KOG0432|consen 120 GTDHAGIATQVVVEKQLAREGGKTRHDLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTEAF 199 (995)
T ss_pred CccccchhHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHhCccHHHHHHHhcCcccccHhhcccCHHHHHHHHHHH
Confidence 99999999999999877665556677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCeeecCccccccCCCCCccCccccccccccccCCC
Q psy1869 164 SELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVDPA 205 (205)
Q Consensus 164 ~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~~~~~~~~~~s 205 (205)
.+|++.|+||++.+.|.||+..++.|||.|| +|.++..++
T Consensus 200 vrL~eeglIyR~~rlVNW~~~L~saiSdiEV--e~~ei~~~t 239 (995)
T KOG0432|consen 200 VRLHEEGLIYRANRLVNWCPALRSAISDIEV--ESVEIPGRT 239 (995)
T ss_pred HHHHhcCceEecCceeeechhHHhhhhhhee--cceecCCCc
Confidence 9999999999999999999999999999999 799987653
No 27
>KOG0435|consensus
Probab=100.00 E-value=4.2e-37 Score=275.37 Aligned_cols=166 Identities=25% Similarity=0.447 Sum_probs=154.3
Q ss_pred CchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCC
Q psy1869 10 DFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHG 89 (205)
Q Consensus 10 ~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G 89 (205)
....||++|+++|.+...+.+. ...+++| +|++++|||+|.|||||.|.|++.|++|||.||+||+|+.++|||.+|
T Consensus 31 ~~~~iEk~W~~~~~~~~~~~~~--~d~sk~K-YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFG 107 (876)
T KOG0435|consen 31 AIAMIEKHWKQYLKDGFPFSKD--SDKSKKK-YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFG 107 (876)
T ss_pred hHHHHHHHHHHHHhcCCccccc--cccCCCc-eEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCCcccccC
Confidence 4457999999999999988863 2345556 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHC
Q psy1869 90 LPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNK 169 (205)
Q Consensus 90 ~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~k 169 (205)
+|.+.+|.+. |+ .+..|....++.++++|++||++.|||+.++|++|.|.++.+++|-+|+++
T Consensus 108 LPAENAAier-gv----------------~P~sWT~~NI~~Mk~Ql~~lg~~FDWdrEiSTC~PdYYKWTQwiFlkLfe~ 170 (876)
T KOG0435|consen 108 LPAENAAIER-GV----------------HPASWTINNIAKMKQQLKSLGISFDWDREISTCEPDYYKWTQWIFLKLFEK 170 (876)
T ss_pred CchhhHHHhc-CC----------------CchhhhHHHHHHHHHHHHHcCcccccccccccCCcchhHHHHHHHHHHHHh
Confidence 9999999987 87 467788889999999999999999999999999999999999999999999
Q ss_pred CCeeecCccccccCCCCCccCccccc
Q psy1869 170 GLVYRGVKVMPYSTACNTPLSNFESG 195 (205)
Q Consensus 170 G~iy~~~~~v~~~~~~~~~ls~~ev~ 195 (205)
|++|+.+-.|.|||.++|+|++++|.
T Consensus 171 GLAYq~Ea~VNWDPvD~TVLAnEQVD 196 (876)
T KOG0435|consen 171 GLAYQAEAEVNWDPVDKTVLANEQVD 196 (876)
T ss_pred hhhhccccccccCcccceeecchhhc
Confidence 99999999999999999999999994
No 28
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=100.00 E-value=4.8e-35 Score=253.11 Aligned_cols=143 Identities=54% Similarity=1.171 Sum_probs=136.9
Q ss_pred CCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHH
Q psy1869 39 PRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNL 118 (205)
Q Consensus 39 ~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~ 118 (205)
++|+|++|||||||+|||||+|+++++|+++||++++|++|.+++|+|+||++|+.+|++.+|.+......+.+.++|.+
T Consensus 1 ~~f~i~~~pP~vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~~ie~ka~k~lg~~~~~~~~~~~~~~~~~ 80 (338)
T cd00818 1 PEFVFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIELKVEKELGISGKKDIEKMGIAEFNA 80 (338)
T ss_pred CCeEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCchhHHHHHHHhCCCCCcchhhcCHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999988886556677788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccc
Q psy1869 119 ECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPY 181 (205)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~ 181 (205)
.|+++++++.+.+.+++++||++.+|+.++.|+++.|.+.++++|.+|+++|+||++.++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~ 143 (338)
T cd00818 81 KCREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW 143 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee
Confidence 999999999999999999999888999999999999999999999999999999999999999
No 29
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.3e-35 Score=263.74 Aligned_cols=140 Identities=26% Similarity=0.394 Sum_probs=135.6
Q ss_pred CCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHH
Q psy1869 38 KPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYN 117 (205)
Q Consensus 38 ~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~ 117 (205)
.++++|++|.|||||+|||||+++++.+||++||+|++|++|.+++|+|+||++|+.+|+++ |+
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~-g~--------------- 67 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKE-GI--------------- 67 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHc-CC---------------
Confidence 56899999999999999999999999999999999999999999999999999999999997 88
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCCCCccCcccccc
Q psy1869 118 LECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESGQ 196 (205)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~~ 196 (205)
.+.++|+++.+.++++++.|+ |+||.|.+|+++.|.+.++++|.+|.++|+||.+...+|||++|++||+|.+|+.
T Consensus 68 -tP~el~d~~~~~~~~~~~~l~--IsfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g 143 (558)
T COG0143 68 -TPQELVDKNHEEFKELFKALN--ISFDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEG 143 (558)
T ss_pred -CHHHHHHHHHHHHHHHHHHhC--CcccccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEcccccccccchheec
Confidence 478999999999999999999 9999999999999999999999999999999999999999999999999999974
No 30
>PLN02224 methionine-tRNA ligase
Probab=100.00 E-value=1.9e-34 Score=264.79 Aligned_cols=153 Identities=16% Similarity=0.188 Sum_probs=137.5
Q ss_pred hcCcchhhhhc---cCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHh
Q psy1869 24 EHEIFQECLKQ---SKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKL 100 (205)
Q Consensus 24 ~~~~~~~~~~~---~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~ 100 (205)
++.+|-...++ ...+++|+|++|||||||+|||||+++++++|+++||+|++|++|.+++|+|+||++|+..|.+.
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~- 129 (616)
T PLN02224 51 KRALYCTSSSQESTVDEADTFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAAN- 129 (616)
T ss_pred cceeeccCCCcccCCCCCCeEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHc-
Confidence 34455433332 23567899999999999999999999999999999999999999999999999999999998875
Q ss_pred CCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCcccc
Q psy1869 101 GIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMP 180 (205)
Q Consensus 101 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~ 180 (205)
|. .+.++|+++...+.+++++|| |+||.+++|+++.|.+.++++|.+|.++|+||++..++|
T Consensus 130 g~----------------~p~e~~~~~~~~~~~~~~~l~--I~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~ 191 (616)
T PLN02224 130 GR----------------NPPEHCDIISQSYRTLWKDLD--IAYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGL 191 (616)
T ss_pred CC----------------ChHHHHHHHHHHHHHHHHHcC--CCCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeee
Confidence 76 356788888899999999999 899999999999999999999999999999999999999
Q ss_pred ccCCCCCccCccccc
Q psy1869 181 YSTACNTPLSNFESG 195 (205)
Q Consensus 181 ~~~~~~~~ls~~ev~ 195 (205)
||++|++++++.|+.
T Consensus 192 yc~~ce~f~~~~~l~ 206 (616)
T PLN02224 192 YCVNCEEYKDEKELL 206 (616)
T ss_pred ecCCCCCCCCHHHHc
Confidence 999999999998874
No 31
>PLN02610 probable methionyl-tRNA synthetase
Probab=100.00 E-value=3e-34 Score=270.15 Aligned_cols=141 Identities=21% Similarity=0.292 Sum_probs=134.5
Q ss_pred CCCCCeEEecCCCCCCCcCchhHHhH-hHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHH
Q psy1869 36 KGKPRYSFYDGPPFATGLPHYGHILA-GAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIA 114 (205)
Q Consensus 36 ~~~~~~~i~~~~P~p~G~LHiGH~r~-~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~ 114 (205)
.+.++++|++|+|||||+|||||+++ ++.+|+++||+|++|++|++++|+|+||++|+..|.+. |.
T Consensus 14 ~~~~~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~-g~------------ 80 (801)
T PLN02610 14 PGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEE-NC------------ 80 (801)
T ss_pred CCCCCEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHc-CC------------
Confidence 45678999999999999999999997 67799999999999999999999999999999999886 76
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCCCCccCcccc
Q psy1869 115 QYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFES 194 (205)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev 194 (205)
.|+++++++.+.+++++++|| |+||.|++|+++.|.+.++++|.+|+++|+||++...++||++|++||+|.+|
T Consensus 81 ----~p~e~~d~~~~~~~~~~~~l~--i~~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e~fl~d~~v 154 (801)
T PLN02610 81 ----TPKEICDKYHAIHKEVYDWFD--ISFDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQKFLADRLV 154 (801)
T ss_pred ----CHHHHHHHHHHHHHHHHHHcC--CccccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCCCcchHHh
Confidence 589999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred c
Q psy1869 195 G 195 (205)
Q Consensus 195 ~ 195 (205)
+
T Consensus 155 ~ 155 (801)
T PLN02610 155 E 155 (801)
T ss_pred c
Confidence 5
No 32
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=100.00 E-value=1.1e-33 Score=242.90 Aligned_cols=132 Identities=26% Similarity=0.490 Sum_probs=126.8
Q ss_pred CeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHH
Q psy1869 40 RYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLE 119 (205)
Q Consensus 40 ~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~ 119 (205)
+++|++|||||||+|||||+++.+++|+++||+|++|++|.+++|+|+||++|+.+|++. |. .
T Consensus 1 ~~~it~~~Py~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~-g~----------------~ 63 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEE-GV----------------T 63 (319)
T ss_pred CEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHc-CC----------------C
Confidence 589999999999999999999999999999999999999999999999999999999886 76 4
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCCCCccC
Q psy1869 120 CRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLS 190 (205)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls 190 (205)
++++++.+.+.+++++++|| |++|.+.+|+++.+.+.++++|++|.++|++|++...++||+.|+++|+
T Consensus 64 ~~e~~~~~~~~~~~~l~~Lg--I~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~ 132 (319)
T cd00814 64 PQELCDKYHEIFKDLFKWLN--ISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLP 132 (319)
T ss_pred HHHHHHHHHHHHHHHHHHcC--CcCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEee
Confidence 67889999999999999999 8999999999999999999999999999999999999999999999998
No 33
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=100.00 E-value=3.6e-34 Score=251.74 Aligned_cols=136 Identities=24% Similarity=0.380 Sum_probs=124.7
Q ss_pred eEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHH
Q psy1869 41 YSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLEC 120 (205)
Q Consensus 41 ~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~ 120 (205)
|+|++|+|||||+|||||+++++.+|+++||+|++|++|.++.|+|+||++|..+|+++ |+ .+
T Consensus 1 ~~ITt~~pY~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~-g~----------------~p 63 (391)
T PF09334_consen 1 FYITTPIPYPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQ-GI----------------DP 63 (391)
T ss_dssp EEEEEEEEETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHT-TS-----------------H
T ss_pred CEEecCCCCCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHc-CC----------------CH
Confidence 68999999999999999999999999999999999999999999999999999999987 87 58
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCCCCccCccccc
Q psy1869 121 RKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESG 195 (205)
Q Consensus 121 ~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~ 195 (205)
.++|+++.+.+++++++|| |++|.|.+|+++.|.+.++++|.+|.++|+||+++..+|||+.|++++++.+|+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~--I~~D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e~fl~e~~v~ 136 (391)
T PF09334_consen 64 EEFCDKYSAKFKELLEALN--ISYDRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCERFLPESFVE 136 (391)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTTEEE-GGGET
T ss_pred HHHHHHHHHHHHHHHHHcC--CCCcceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcCcccccceee
Confidence 8999999999999999999 999999999999999999999999999999999999999999999999999995
No 34
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-33 Score=258.77 Aligned_cols=138 Identities=26% Similarity=0.383 Sum_probs=132.1
Q ss_pred CCeEEecCCCCCCCcCchhHHhHh-HHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHH
Q psy1869 39 PRYSFYDGPPFATGLPHYGHILAG-AIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYN 117 (205)
Q Consensus 39 ~~~~i~~~~P~p~G~LHiGH~r~~-i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~ 117 (205)
++|+|++|||||||.|||||+++. +++|+++||+|++|++|.+++|+|+||++|+.+|++. |.
T Consensus 3 ~~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~-g~--------------- 66 (556)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKE-GV--------------- 66 (556)
T ss_pred CcEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHc-CC---------------
Confidence 479999999999999999999997 9999999999999999999999999999999999986 76
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCCCCccCccccc
Q psy1869 118 LECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESG 195 (205)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~ 195 (205)
.+.++++++.+.+.+++++|| |++|.+++|+++.|.+.++++|.+|+++|+||++.+++|||++|+++|++.+|.
T Consensus 67 -~~~~~~~~~~~~~~~~~~~l~--i~~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~~v~ 141 (556)
T PRK12268 67 -TPQELADKYHEEHKEDFKKLG--ISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDGRFLPDRYVE 141 (556)
T ss_pred -CHHHHHHHHHHHHHHHHHHcC--CcCCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCCcCcCcccee
Confidence 478899999999999999999 889999999999999999999999999999999999999999999999999885
No 35
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=100.00 E-value=9e-33 Score=236.58 Aligned_cols=137 Identities=33% Similarity=0.633 Sum_probs=126.7
Q ss_pred CeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHH
Q psy1869 40 RYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLE 119 (205)
Q Consensus 40 ~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~ 119 (205)
||+|++|||||||.|||||+++++++|+++||++++|++|.+++|+|+||++|+.+|++.++... ....+++|.+.
T Consensus 1 ~~~i~~~pP~~~g~~HiGH~~~~i~~D~i~R~~r~~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~----~~~~~~~~~~~ 76 (312)
T cd00668 1 KFYVTTPPPYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKK----KTIWIEEFRED 76 (312)
T ss_pred CEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCCCCCccCCCCHHHHHHHHHhcCccc----ccccHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999754322 22337889999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCcccc
Q psy1869 120 CRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMP 180 (205)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~ 180 (205)
|+++++++.+.+++++++||++.||+.+++|+++.|.+.++++|.+|.++|+||++.+++.
T Consensus 77 ~~~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~ 137 (312)
T cd00668 77 PKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPVR 137 (312)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeecceeE
Confidence 9999999999999999999988899999999999999999999999999999999988874
No 36
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1e-32 Score=257.24 Aligned_cols=138 Identities=24% Similarity=0.311 Sum_probs=131.8
Q ss_pred CCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHH
Q psy1869 39 PRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNL 118 (205)
Q Consensus 39 ~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~ 118 (205)
++++|++|||||||.|||||+++++++|+++||+|++|++|.+++|+|+||++|+..|++. |.
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~-g~---------------- 64 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKE-GI---------------- 64 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHc-CC----------------
Confidence 4699999999999999999999999999999999999999999999999999999999986 76
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCCCCccCccccc
Q psy1869 119 ECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESG 195 (205)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~ 195 (205)
.+.++++++.+.+++++++|| |++|.+++|+++.|.+.++++|.+|+++|+||++.+.+|||++|+++|++.+|+
T Consensus 65 ~p~e~~~~~~~~~~~~~~~l~--i~~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~v~ 139 (673)
T PRK00133 65 TPEELIARYHAEHKRDFAGFG--ISFDNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKGMFLPDRFVK 139 (673)
T ss_pred CHHHHHHHHHHHHHHHHHHhC--CCCCCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCCCCccchhee
Confidence 367889999999999999999 888999999999999999999999999999999999999999999999999885
No 37
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-32 Score=249.70 Aligned_cols=138 Identities=22% Similarity=0.356 Sum_probs=130.8
Q ss_pred CCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHH
Q psy1869 39 PRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNL 118 (205)
Q Consensus 39 ~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~ 118 (205)
++++|++|||||||.|||||+|+++++|+++||+|++|++|.+++|+|++|++|...|++. |.
T Consensus 1 ~~~~i~~~~P~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~-g~---------------- 63 (511)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEA-GI---------------- 63 (511)
T ss_pred CCEEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHc-CC----------------
Confidence 4799999999999999999999999999999999999999999999999999999998775 76
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCCCCccCccccc
Q psy1869 119 ECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESG 195 (205)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~ 195 (205)
.+.++++++.+.|.++|++|| |++|.+++|+++.+.+.++++|.+|.++|++|++.+.+|||+.|+++|++.|+.
T Consensus 64 ~~~~~~~~~~~~~~~~l~~l~--I~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~ 138 (511)
T PRK11893 64 SPQELADRNSAAFKRLWEALN--ISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELI 138 (511)
T ss_pred CHHHHHHHHHHHHHHHHHHhC--CCcCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhc
Confidence 357889999999999999999 889999999999999999999999999999999999999999999999999874
No 38
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.6e-32 Score=255.24 Aligned_cols=139 Identities=22% Similarity=0.351 Sum_probs=132.0
Q ss_pred CCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHH
Q psy1869 38 KPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYN 117 (205)
Q Consensus 38 ~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~ 117 (205)
+++|+|++|+|||||+|||||+++++++|+++||+|++|++|.+++|+|+||++|+..|++. |.
T Consensus 3 ~~~~~it~~~py~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~-g~--------------- 66 (648)
T PRK12267 3 KKTFYITTPIYYPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKA-GK--------------- 66 (648)
T ss_pred CCCEEEeeCCCCCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHc-CC---------------
Confidence 35799999999999999999999999999999999999999999999999999999988875 76
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCCCCccCccccc
Q psy1869 118 LECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESG 195 (205)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~ 195 (205)
.++++++++.+.|++++++|| |++|.+++|+++.|.+.++++|.+|.++|+||++...++||+.|+++|++.++.
T Consensus 67 -~~~e~~d~~~~~fk~~l~~lg--I~~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~~~l~ 141 (648)
T PRK12267 67 -TPQEYVDEISAGFKELWKKLD--ISYDKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCETFFTESQLV 141 (648)
T ss_pred -CHHHHHHHHHHHHHHHHHHcC--CCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCCccCChHHhc
Confidence 367899999999999999999 889999999999999999999999999999999999999999999999998863
No 39
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.98 E-value=2.3e-32 Score=248.97 Aligned_cols=136 Identities=26% Similarity=0.413 Sum_probs=129.7
Q ss_pred eEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHH
Q psy1869 41 YSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLEC 120 (205)
Q Consensus 41 ~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~ 120 (205)
|+|++|||||||.|||||+++++++|+++||+|++|++|.+++|+|+||++|+..|+++ |. .+
T Consensus 1 ~~it~~~P~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~-g~----------------~~ 63 (530)
T TIGR00398 1 ILITTALPYANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQE-GL----------------TP 63 (530)
T ss_pred CEEecCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHc-CC----------------CH
Confidence 68999999999999999999999999999999999999999999999999999999886 76 36
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCCCCccCccccc
Q psy1869 121 RKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESG 195 (205)
Q Consensus 121 ~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~ 195 (205)
.++++.+.+.+++++++|| |++|.+.+|+++.|.+.++++|.+|.++|++|++++.++||+.|+++|+|.+|+
T Consensus 64 ~e~~~~~~~~~~~~l~~Lg--I~~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v~ 136 (530)
T TIGR00398 64 KELVDKYHEEFKDDWKWLN--ISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYVE 136 (530)
T ss_pred HHHHHHHHHHHHHHHHHhC--CCCCCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhhc
Confidence 7889999999999999999 788999999999999999999999999999999999999999999999999885
No 40
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.97 E-value=7.1e-32 Score=231.30 Aligned_cols=131 Identities=25% Similarity=0.465 Sum_probs=123.6
Q ss_pred CeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHH
Q psy1869 40 RYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLE 119 (205)
Q Consensus 40 ~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~ 119 (205)
||+|++|||||||.+||||+|+++++|+++||+|++|++|.+++|+|++|++|+..|++. |. .
T Consensus 1 k~~it~~~Py~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~-g~----------------~ 63 (314)
T cd00812 1 KFYILVMFPYPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKI-GR----------------D 63 (314)
T ss_pred CeEEecCCCCCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHc-CC----------------C
Confidence 689999999999999999999999999999999999999999999999999999999875 76 4
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCCCC
Q psy1869 120 CRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNT 187 (205)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~~~ 187 (205)
|.++++++.+.+.+++++||+++||+.++.|+++.|.+.++++|.+|.++|+||++.++++||.....
T Consensus 64 ~~e~~~~~~~~~~~~~~~lgi~~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~ 131 (314)
T cd00812 64 PEDWTEYNIKKMKEQLKRMGFSYDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWCKLLDQ 131 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhccceecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeeeCccce
Confidence 89999999999999999999888888999999999999999999999999999999999999955443
No 41
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=3.4e-32 Score=260.06 Aligned_cols=147 Identities=26% Similarity=0.404 Sum_probs=126.8
Q ss_pred CchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhh---------hhcCHHHHHHHHHHHH
Q psy1869 54 PHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADV---------AKMGIAQYNLECRKIV 124 (205)
Q Consensus 54 LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~---------~~~~~~~~~~~~~~~~ 124 (205)
|||||+++++++|+++||+||+|++|++++|||+||+||+..|++. +......+ .....++| ..+++++
T Consensus 1 lHiGH~~~~t~~D~i~Ry~rm~G~~Vl~~~G~d~~GlPie~~ae~~-~~~~~~~~~~~~~~~gi~~~~i~~f-~~~~~~~ 78 (897)
T PRK12300 1 LHVGHGRTYTIGDVIARYKRMRGYNVLFPMAFHVTGTPILGIAERI-ARGDPETIELYKSLYGIPEEELEKF-KDPEYIV 78 (897)
T ss_pred CccchhHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCcCHHHHHHHh-hccchhHHHHHHHHcCCCHHHHHHh-cCHHHHH
Confidence 7999999999999999999999999999999999999999998764 32211111 11113444 3479999
Q ss_pred HHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCCCCccCccccccccccccCC
Q psy1869 125 MRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVDP 204 (205)
Q Consensus 125 ~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~~~~~~~~~~ 204 (205)
++|.+.+++++++||+++||++.|.|+++.|.+.++++|.+|+++|+||++.++|+|||+|+|+|||+|++ +.+..+|
T Consensus 79 ~~~~~~~~~~~~~lG~~~DW~r~y~T~dp~y~~~v~w~F~~L~ekGliyrg~~~v~wcp~~~t~lad~e~~--~~e~~~~ 156 (897)
T PRK12300 79 EYFSEEAKEDMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVRYCPNDNNPVGDHDLL--DGEEPEI 156 (897)
T ss_pred HHhHHHHHHHHHHhCcEEeCCCCeECCChhHHHHHHHHHHHHHHCCCEecCCEeeeeCCCCCCCchHHHHh--cCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999995 4444444
No 42
>KOG0433|consensus
Probab=99.96 E-value=5.5e-29 Score=225.10 Aligned_cols=185 Identities=25% Similarity=0.385 Sum_probs=165.0
Q ss_pred CCCCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCcccccccc
Q psy1869 6 PEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGW 85 (205)
Q Consensus 6 ~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~ 85 (205)
+.++|....+.++.+.|.+..++....+. +++.-|++.+ +||.||||||+|.|+.||+.||.-++|.+|++++||
T Consensus 27 ~v~~Ns~gr~~q~~evi~~~~~~~~qls~-~q~~~f~L~d----anG~lhlghalnkILkdIinr~~laqg~~alyvpGw 101 (937)
T KOG0433|consen 27 LVHFNSTGRIGQVIEVIQPPEILSSQLSD-QQRVEFELKD----ANGNLHLGHALNKILKDIINRILLAQGKSALYVPGW 101 (937)
T ss_pred ccccccccchHHHHHHhCChHHHHHHHhh-ccCceEEEec----cCCCccchHHHHHHHHHHHHHHHHhcCceeccCCCC
Confidence 56788888888899999999998877653 4566688888 999999999999999999999999999999999999
Q ss_pred CCCCHHHH-HHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHH
Q psy1869 86 DCHGLPVE-FEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFS 164 (205)
Q Consensus 86 d~~G~~i~-~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~ 164 (205)
||||+||+ .+|.+.+.... ...+.-+.++.++.+|.+.++.+++.++++|++.||.+.|.|+++.|.....++|.
T Consensus 102 DchGLPiEs~kalssl~~~~----~~~s~leiR~~Ar~fA~~AIk~Q~e~F~r~gv~aDW~n~Y~T~~~~ye~aQL~iF~ 177 (937)
T KOG0433|consen 102 DCHGLPIESTKALSSLTESE----GSRTPLEIRAKARIFADEAIKKQMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFA 177 (937)
T ss_pred CcCCCchHHHHHhhhhhhcc----ccCCcHHHHHHHHHHHHHHHHHHHHHHHHheeeccCCCceeecChHHHHHHHHHHH
Confidence 99999999 57666544322 34456677888999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCeeecCccccccCCCCCccCccccccccccc
Q psy1869 165 ELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEV 201 (205)
Q Consensus 165 ~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~~~~~~~ 201 (205)
+|+++|+||++.+||||+|+.+|+|++.|+ ||.+.
T Consensus 178 ~lyekgLvyR~~KPVyWSpSSRTALAEaEL--EYn~n 212 (937)
T KOG0433|consen 178 KLYEKGLVYRSFKPVYWSPSSRTALAESEL--EYNDN 212 (937)
T ss_pred HHHhccceeccCCcceecCcchhhhhhhhc--cCCcC
Confidence 999999999999999999999999999999 78764
No 43
>KOG0437|consensus
Probab=99.95 E-value=2.5e-28 Score=220.88 Aligned_cols=190 Identities=22% Similarity=0.400 Sum_probs=162.1
Q ss_pred CCCCCchHHHHHHHHHHHhcCcchhhhh--ccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCcccccc
Q psy1869 6 PEYIDFAKEEENILRFWKEHEIFQECLK--QSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRF 83 (205)
Q Consensus 6 ~~~~~~~~~e~~~~~~w~~~~~~~~~~~--~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~ 83 (205)
+++..+.+||+++|++|+++++|+.+.. ...+++||+++.|.||.||.||+||+++..-.|+..-|.|++|++|++++
T Consensus 9 ar~d~L~eiEk~~q~~W~~e~~fevda~~el~~~~~Kff~tfpyPYMNG~LHlGH~FslSK~eFa~~y~rL~Gk~vLfPf 88 (1080)
T KOG0437|consen 9 ARRDSLLEIEKKYQKKWDTEKVFEVDAPNELQKSKPKFFVTFPYPYMNGRLHLGHAFSLSKVEFASGYERLQGKNVLFPF 88 (1080)
T ss_pred HHHHHHHHHHHHHHHhhhhhhheeccCchhcccccCceeEeccccccCceeeccceeehhhhHHHHHHHHhcCceEEeec
Confidence 4567889999999999999999998763 34578899999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHH------hCCCC--Ch---------------------------hhhh-------------c--CH
Q psy1869 84 GWDCHGLPVEFEIDKK------LGIKG--PA---------------------------DVAK-------------M--GI 113 (205)
Q Consensus 84 G~d~~G~~i~~~a~~~------~g~~~--~~---------------------------~~~~-------------~--~~ 113 (205)
|++|.|+||...|+++ +|..+ +. ..++ + ..
T Consensus 89 gFHCTGMPI~A~AdKLkrEie~fG~ppdf~~e~eeEv~eev~~~~~~~~~k~kgKKsk~aaK~g~~kYQw~IM~slGl~d 168 (1080)
T KOG0437|consen 89 GFHCTGMPIKASADKLKREIELFGCPPDFPEEEEEEVEEEVKTEDAIEDVKFKGKKSKAAAKTGGQKYQWEIMESLGLPD 168 (1080)
T ss_pred ccccCCCccHHhHHHHHHHHHHhCCCCCCchhhhhhhhhcccccccccccccccchhhHHHhhcccchhHHHHHHcCCCH
Confidence 9999999999888764 33211 00 0001 1 12
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHhccccccCCceeccC--hhhHHHHHHHHHHHHHCCCeeecCccccccCCCCCcc
Q psy1869 114 AQYN--LECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLY--PWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPL 189 (205)
Q Consensus 114 ~~~~--~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~--~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~~~~l 189 (205)
++.. ..+..|...|.....++|+++|..|||.++|.|+| ++|..+|+|.|.+|.+.|.|-.+.+...|||.+++++
T Consensus 169 eEI~~F~d~~~WL~yFPpLc~~dlk~~gl~iDWRRSFITTDvNpYyDsFVRWQ~n~L~~~gkI~fgkRyTIyspkDgQpC 248 (1080)
T KOG0437|consen 169 EEIKKFADPKHWLYYFPPLCERDLKRFGLGIDWRRSFITTDVNPYYDSFVRWQFNKLKEAGKIKFGKRYTIYSPKDGQPC 248 (1080)
T ss_pred HHhhcccChhHHHHhCChHHHHHHHHhCCCcceeeeeeecccchhHHHHHHHHHHHHHhcCCcccCcceeeecCCCCCcc
Confidence 2211 25667888899999999999999999999999984 8999999999999999999999999999999999999
Q ss_pred Cccccc
Q psy1869 190 SNFESG 195 (205)
Q Consensus 190 s~~ev~ 195 (205)
.||+..
T Consensus 249 mDHDR~ 254 (1080)
T KOG0437|consen 249 MDHDRA 254 (1080)
T ss_pred cccccc
Confidence 999985
No 44
>KOG0436|consensus
Probab=99.94 E-value=1.1e-26 Score=199.73 Aligned_cols=142 Identities=19% Similarity=0.263 Sum_probs=131.9
Q ss_pred cCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHH
Q psy1869 35 SKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIA 114 (205)
Q Consensus 35 ~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~ 114 (205)
.++++.+++++|.-|||.++||||+++.+++|+++|+.+++|..|++..|+|+||++|..+|+.. |..
T Consensus 35 ~~~~~~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatn-G~~----------- 102 (578)
T KOG0436|consen 35 VDEGETFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATN-GRN----------- 102 (578)
T ss_pred ccCCceeEEecceeecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhc-CCC-----------
Confidence 45667999999999999999999999999999999999999999999999999999999999887 763
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCCCCccCcccc
Q psy1869 115 QYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFES 194 (205)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev 194 (205)
+.++|++.-+.+.+..+.+| |.++.|++|+++.|...|++++..+.++|+||++++.+|||++|+||+++..|
T Consensus 103 -----P~e~cDr~s~~f~qL~k~~g--i~yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv 175 (578)
T KOG0436|consen 103 -----PPELCDRISQSFRQLWKDAG--IAYTKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKV 175 (578)
T ss_pred -----hHHHHhhhhHHHHHHHHHhC--cchhheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccccCCHHHH
Confidence 45667777778888888999 99999999999999999999999999999999999999999999999999988
Q ss_pred c
Q psy1869 195 G 195 (205)
Q Consensus 195 ~ 195 (205)
.
T Consensus 176 ~ 176 (578)
T KOG0436|consen 176 L 176 (578)
T ss_pred h
Confidence 4
No 45
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=99.94 E-value=1.8e-26 Score=187.63 Aligned_cols=130 Identities=18% Similarity=0.122 Sum_probs=117.5
Q ss_pred CeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHH
Q psy1869 40 RYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLE 119 (205)
Q Consensus 40 ~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~ 119 (205)
+++|-.++|||||+|||||+|+++++|+|+|++++.|++|.+..++|++|.+|...|... + .
T Consensus 1 ~v~ve~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~-~-----------------~ 62 (212)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSL-E-----------------K 62 (212)
T ss_pred CeEEEecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHH-H-----------------H
Confidence 467889999999999999999999999999999999999999999999999999999654 2 3
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCCCCccCc
Q psy1869 120 CRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSN 191 (205)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~ 191 (205)
++++++.+.+.+.+++++|| |.+|.+.+|++. .+.+.+++++|.++|++|+.++.+|+|+.+...+++
T Consensus 63 ~~~~~~~~~~~~~~~~~~L~--i~~d~~~~es~~--~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~~~~~d 130 (212)
T cd00671 63 WRKLVEESIKADLETYGRLD--VRFDVWFGESSY--LGLMGKVVELLEELGLLYEEDGALWLDLTEFGDDKD 130 (212)
T ss_pred HHHHHHHHHHHHHHHHHHhC--CcCceecchhhh--hhHHHHHHHHHHHCCCEEEeCCcEEEechhhCCCCC
Confidence 78899999999999999999 888999888764 889999999999999999999999999876554444
No 46
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.92 E-value=7.9e-25 Score=196.46 Aligned_cols=126 Identities=16% Similarity=0.197 Sum_probs=111.4
Q ss_pred CCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHH
Q psy1869 39 PRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNL 118 (205)
Q Consensus 39 ~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~ 118 (205)
.+..++.++|+|+|++||||+|+++++|+++||+|++|++|.+++|+|++|++|...|.+. |.
T Consensus 22 ~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~-g~---------------- 84 (463)
T PRK00260 22 GKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEE-GE---------------- 84 (463)
T ss_pred CcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHc-CC----------------
Confidence 3456677778888999999999999999999999999999999999999999999999876 76
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc-ccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCC
Q psy1869 119 ECRKIVMRYSSEWEKVVKRIGRWI-DFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTAC 185 (205)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~lg~~i-~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~ 185 (205)
.|.++++++.+.+.+++++|| | ..|.+..++ .|...+.+++++|+++|++|+++++|+||++.
T Consensus 85 ~~~e~~~~~~~~f~~~~~~Lg--i~~~d~~~r~t--~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~ 148 (463)
T PRK00260 85 SIKELTERYIAAFHEDMDALN--VLPPDIEPRAT--EHIPEIIELIERLIDKGHAYEADGDVYFDVRK 148 (463)
T ss_pred CHHHHHHHHHHHHHHHHHHcC--CCCCCcccccc--ccHHHHHHHHHHHHHCCCEEEecCeEEEeccc
Confidence 589999999999999999999 6 334443332 58899999999999999999999999999887
No 47
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=99.92 E-value=1.7e-24 Score=194.21 Aligned_cols=127 Identities=15% Similarity=0.135 Sum_probs=113.1
Q ss_pred CeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHH
Q psy1869 40 RYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLE 119 (205)
Q Consensus 40 ~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~ 119 (205)
+.-++.++|||+|++||||+|++|.+|+++||+|++||+|.+++|+|++|++|...|.+. |+ .
T Consensus 21 ~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~-g~----------------~ 83 (465)
T TIGR00435 21 KVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRAREN-GE----------------S 83 (465)
T ss_pred cceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHc-CC----------------C
Confidence 455666667888999999999999999999999999999999999999999999999886 77 4
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecC-ccccccCCCC
Q psy1869 120 CRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGV-KVMPYSTACN 186 (205)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~-~~v~~~~~~~ 186 (205)
+.++++.+.+.+.+++++|| |.++.++.+.+ .|...+.+++++|+++|++|+++ +.+|||+.|-
T Consensus 84 ~~e~a~~~~~~f~~dl~~Lg--I~~d~~~~raT-~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~~ 148 (465)
T TIGR00435 84 VYEVSERFIEAYFEDMKALN--VLPPDLEPRAT-EHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKF 148 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhC--CCCCcCCcccc-ccHHHHHHHHHHHHHCCCEEEecCCcEEEecccc
Confidence 68889999999999999999 77776543333 78999999999999999999999 9999999884
No 48
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=99.91 E-value=7.9e-24 Score=192.04 Aligned_cols=129 Identities=22% Similarity=0.251 Sum_probs=117.9
Q ss_pred CCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHH
Q psy1869 37 GKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQY 116 (205)
Q Consensus 37 ~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~ 116 (205)
++++++|..++|||||+|||||+|+++++|+++|++++.|++|.+++|+|++|.++...+... +.
T Consensus 109 ~~~~v~Ie~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~-~~-------------- 173 (507)
T PRK01611 109 KGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASL-EL-------------- 173 (507)
T ss_pred CCCEEEEEecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHH-HH--------------
Confidence 566899999999999999999999999999999999999999999999999999999888764 21
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCee-ecCccccccCC
Q psy1869 117 NLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVY-RGVKVMPYSTA 184 (205)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy-~~~~~v~~~~~ 184 (205)
..+.+++.+.+.++++|++|| |.+|.+.++++..+.+.+.+++++|.++|++| +.++++|++..
T Consensus 174 --~~~~~~~~~~~~~~~~l~~Lg--I~~D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~ 238 (507)
T PRK01611 174 --LWRKAVDISLDEIKEDLDRLG--VHFDVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLT 238 (507)
T ss_pred --HHHHHHHHHHHHHHHHHHHcC--CeeeEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEch
Confidence 467888899999999999999 88899999888888899999999999999999 99998888753
No 49
>PLN02946 cysteine-tRNA ligase
Probab=99.90 E-value=9.4e-24 Score=191.25 Aligned_cols=127 Identities=17% Similarity=0.136 Sum_probs=117.7
Q ss_pred CCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHH
Q psy1869 39 PRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNL 118 (205)
Q Consensus 39 ~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~ 118 (205)
.++-++...|+|.+.+||||+|++|.+|+|+||+++.||+|.+++|+|++|++|...|.+. |+
T Consensus 79 ~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~-g~---------------- 141 (557)
T PLN02946 79 GKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANEL-GE---------------- 141 (557)
T ss_pred CceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHc-CC----------------
Confidence 3566777789999999999999999999999999999999999999999999999999986 77
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCC
Q psy1869 119 ECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTAC 185 (205)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~ 185 (205)
.+.+++++|.+.+.+++++|| |. +.++.|....|...+.+++++|+++|++|++++.||||++.
T Consensus 142 ~~~ela~~y~~~f~~d~~~Ln--I~-~p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~ 205 (557)
T PLN02946 142 DPISLSRRYCEEFLSDMAYLH--CL-PPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDK 205 (557)
T ss_pred CHHHHHHHHHHHHHHHHHHCC--CC-CCCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCc
Confidence 478899999999999999999 66 66778888899999999999999999999999999999886
No 50
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.90 E-value=1.5e-23 Score=183.07 Aligned_cols=128 Identities=13% Similarity=0.106 Sum_probs=113.9
Q ss_pred CeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHH
Q psy1869 40 RYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLE 119 (205)
Q Consensus 40 ~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~ 119 (205)
++-++.+.|+|.+++||||+|++|.+|+++||++++|++|.+++|+|++|++|...|++. |+ .
T Consensus 9 ~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~-G~----------------~ 71 (384)
T PRK12418 9 TATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARD-GV----------------D 71 (384)
T ss_pred eeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHc-CC----------------C
Confidence 456666777777999999999999999999999999999999999999999999999987 87 4
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCc----cccccCCCCC
Q psy1869 120 CRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVK----VMPYSTACNT 187 (205)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~----~v~~~~~~~~ 187 (205)
+.++++++.+.+.+++++||| ...+.+.++++ +.+.+++++++|+++|++|++.+ .|||+++.-.
T Consensus 72 ~~e~a~~~~~~f~~d~~~Lni-~~~~~~~raTe--~i~~~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~ 140 (384)
T PRK12418 72 WRDLAEREIALFREDMEALRV-LPPRDYVGAVE--SIPEVVELVEKLLASGAAYVVDDEEYPDVYFSVDATP 140 (384)
T ss_pred HHHHHHHHHHHHHHHHHHhCC-CCCCccccCCC--CHHHHHHHHHHHHHCCCEEEeCCCCCccEEEecCchh
Confidence 789999999999999999993 26677777766 48999999999999999999999 8999987643
No 51
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.90 E-value=2.2e-23 Score=182.98 Aligned_cols=127 Identities=13% Similarity=0.115 Sum_probs=110.2
Q ss_pred CeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHH
Q psy1869 40 RYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLE 119 (205)
Q Consensus 40 ~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~ 119 (205)
++-++.+.|+|.+++||||+|++|.+|+++||+++.|++|.+++|+|++|++|...|++. |+ .
T Consensus 36 ~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~-g~----------------t 98 (411)
T TIGR03447 36 EAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERD-GV----------------D 98 (411)
T ss_pred cceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHc-CC----------------C
Confidence 344555556666999999999999999999999999999999999999999999999886 77 4
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCc----cccccCCCC
Q psy1869 120 CRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVK----VMPYSTACN 186 (205)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~----~v~~~~~~~ 186 (205)
+.++++++.+.+.+++++||+ ...+.+.++++. ...+++++++|.++|++|++++ .|||+++.-
T Consensus 99 ~~ela~~y~~~f~~d~~~Lni-~~~d~~~RaTe~--i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~ 166 (411)
T TIGR03447 99 WRELGTSQIDLFREDMEALRV-LPPRDYIGAVES--IDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEAT 166 (411)
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CCCCcccCCCCC--HHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccch
Confidence 788999999999999999994 235666666554 8999999999999999999997 799998763
No 52
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.89 E-value=8.4e-23 Score=183.12 Aligned_cols=128 Identities=14% Similarity=0.170 Sum_probs=115.6
Q ss_pred CCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCcccccc----------ccCCCCHHHHHHHHHHhCCCCChh
Q psy1869 38 KPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRF----------GWDCHGLPVEFEIDKKLGIKGPAD 107 (205)
Q Consensus 38 ~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~----------G~d~~G~~i~~~a~~~~g~~~~~~ 107 (205)
..++-++...|+|++++||||+|++|.+|+++||+++.|++|.+++ |.|+||.+|...|.+. |+
T Consensus 21 ~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~-g~----- 94 (490)
T PRK14536 21 HGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEH-GK----- 94 (490)
T ss_pred CCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHc-CC-----
Confidence 3468889999999999999999999999999999999999999997 6666799999988876 77
Q ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCC
Q psy1869 108 VAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTAC 185 (205)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~ 185 (205)
.+.+++++|.+.+.+++++|| |.++.++ +..+.|...+++++++|+++|++|++.+.||||++.
T Consensus 95 -----------~~~e~a~~~~~~f~~d~~~Ln--i~~~~~~-~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~ 158 (490)
T PRK14536 95 -----------SVLEIAAHYTAAFFRDTARLN--IERPSIV-CNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT 158 (490)
T ss_pred -----------CHHHHHHHHHHHHHHHHHHcC--CCCCcee-cCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc
Confidence 468899999999999999999 8776666 556899999999999999999999999999999864
No 53
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.88 E-value=1.7e-22 Score=184.87 Aligned_cols=129 Identities=11% Similarity=0.086 Sum_probs=117.3
Q ss_pred CCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHH
Q psy1869 38 KPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYN 117 (205)
Q Consensus 38 ~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~ 117 (205)
..++-++...|+|.+.+||||+|++|.+|+++||+++.|++|.+++|+|++|++|...|.+. |+
T Consensus 246 ~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~-G~--------------- 309 (699)
T PRK14535 246 PENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAEN-GE--------------- 309 (699)
T ss_pred CCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHc-CC---------------
Confidence 34577889999999999999999999999999999999999999999999999999999986 77
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeec-CccccccCCCC
Q psy1869 118 LECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRG-VKVMPYSTACN 186 (205)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~-~~~v~~~~~~~ 186 (205)
.+.+++++|.+.+.+++++|| |..+.+ .|....|...+..++++|+++|++|++ .+.||||+++-
T Consensus 310 -sp~ela~~y~~~F~~d~~~Ln--I~~p~~-~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~f 375 (699)
T PRK14535 310 -TIGELTARFIQAMHEDADALG--VLRPDI-EPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREF 375 (699)
T ss_pred -CHHHHHHHHHHHHHHHHHHcC--CCCCcE-eeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEecccc
Confidence 478899999999999999999 777775 555679999999999999999999987 56899999873
No 54
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=99.87 E-value=4.4e-22 Score=184.46 Aligned_cols=129 Identities=12% Similarity=0.155 Sum_probs=115.5
Q ss_pred CCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHH-HCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHH
Q psy1869 39 PRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAH-QNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYN 117 (205)
Q Consensus 39 ~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r-~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~ 117 (205)
.++-++.+.|++.+.+||||||++|.+|+++||++ +.||+|.+++|++++|++|...|.+. |+.
T Consensus 59 ~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~-g~~-------------- 123 (651)
T PTZ00399 59 RQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREE-KLS-------------- 123 (651)
T ss_pred CeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHh-CCC--------------
Confidence 35666777777779999999999999999999999 99999999999999999999999987 761
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCCC
Q psy1869 118 LECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACN 186 (205)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~~ 186 (205)
.+.++++++.+.+.+++++|| |....++.+. ..|...+..++++|+++|++|++++.|||+++.-
T Consensus 124 -~~~el~~~~~~~f~~d~~~Ln--i~~p~~~~r~-tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~f 188 (651)
T PTZ00399 124 -IFLELARKWEKEFFEDMKALN--VRPPDVITRV-SEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAF 188 (651)
T ss_pred -cHHHHHHHHHHHHHHHHHHcC--CCCCccccCc-CccHHHHHHHHHHHHHCCCEEEECCeEEEEchhc
Confidence 267889999999999999999 8777777766 5899999999999999999999999999998764
No 55
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=99.87 E-value=1.4e-21 Score=174.68 Aligned_cols=127 Identities=14% Similarity=0.181 Sum_probs=114.6
Q ss_pred CCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCC----------CHHHHHHHHHHhCCCCChhh
Q psy1869 39 PRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCH----------GLPVEFEIDKKLGIKGPADV 108 (205)
Q Consensus 39 ~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~----------G~~i~~~a~~~~g~~~~~~~ 108 (205)
.++-++...|+|...+||||+|++|.+|+++||+++.|++|.+++++.+- |.+|...|.+. |.
T Consensus 20 ~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~-g~------ 92 (481)
T PRK14534 20 SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARER-GL------ 92 (481)
T ss_pred CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHc-CC------
Confidence 46888999999999999999999999999999999999999995444444 78899988886 77
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCC
Q psy1869 109 AKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTAC 185 (205)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~ 185 (205)
.+.+++++|.+.+.+++++|| |.++.++.+ ...|...+++++++|+++|++|++.+.||||+.+
T Consensus 93 ----------~~~e~a~~~~~~f~~d~~~Ln--i~~~~~~p~-atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~ 156 (481)
T PRK14534 93 ----------TVYEISRFFTEAFFDDCKKLN--IVYPDKVLV-ASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC 156 (481)
T ss_pred ----------CHHHHHHHHHHHHHHHHHHcC--CCCCceecC-ccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc
Confidence 478899999999999999999 888888776 5699999999999999999999999999999997
No 56
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.84 E-value=1.1e-20 Score=153.59 Aligned_cols=93 Identities=16% Similarity=0.169 Sum_probs=81.7
Q ss_pred CCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHH
Q psy1869 37 GKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQY 116 (205)
Q Consensus 37 ~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~ 116 (205)
++.+++++.| +|+|++||||+|+++++|+++||+|++|++|++++|+|++|++|+..|++. |.
T Consensus 19 ~~~~~y~~gp--t~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~-g~-------------- 81 (213)
T cd00672 19 GLVTMYVCGP--TVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREE-GL-------------- 81 (213)
T ss_pred CCceEEEeCC--ccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHc-CC--------------
Confidence 4445555554 555899999999999999999999999999999999999999999999986 76
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccc-CCceec
Q psy1869 117 NLECRKIVMRYSSEWEKVVKRIGRWIDF-DNDYKT 150 (205)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~lg~~i~~-d~~~~T 150 (205)
.++++++++.+.+++++++|| |.+ |.+.+|
T Consensus 82 --~p~e~~~~~~~~f~~~~~~l~--i~~~d~~~rt 112 (213)
T cd00672 82 --SWKEVADYYTKEFFEDMKALN--VLPPDVVPRV 112 (213)
T ss_pred --CHHHHHHHHHHHHHHHHHHcC--CCCCCcceee
Confidence 478999999999999999999 777 778777
No 57
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=4.9e-20 Score=168.20 Aligned_cols=167 Identities=19% Similarity=0.193 Sum_probs=124.9
Q ss_pred CchHHHHHHHHHHHhcCc-chhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCC
Q psy1869 10 DFAKEEENILRFWKEHEI-FQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCH 88 (205)
Q Consensus 10 ~~~~~e~~~~~~w~~~~~-~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~ 88 (205)
+...+.+.+.+.+.+.+- |-.. ....+++++|-...|||||||||||+||+|+||+|+|.+++.||+|+..+.++|.
T Consensus 89 ~~~~~~~~~~~~l~~~~~~~G~~--~~~~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~ 166 (577)
T COG0018 89 SPEFLAELLLEILEKGDDRYGRS--KLGKGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDW 166 (577)
T ss_pred CHHHHHHHHHHHHHhcccccCcc--ccCCCCEEEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcH
Confidence 344556666666665332 2111 1234568999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHH--hCCC-----C-Ch------------hhhh-cC------HHHHH---------HHHHHHHHHHHHHHH
Q psy1869 89 GLPVEFEIDKK--LGIK-----G-PA------------DVAK-MG------IAQYN---------LECRKIVMRYSSEWE 132 (205)
Q Consensus 89 G~~i~~~a~~~--~g~~-----~-~~------------~~~~-~~------~~~~~---------~~~~~~~~~~~~~~~ 132 (205)
|.++...+... .+.+ . ++ ++++ .+ .+.+. ..-+++++..+..++
T Consensus 167 G~Q~~~l~~~~~~~~~e~~~~~~~~~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~~lw~~~v~~~l~~~k 246 (577)
T COG0018 167 GTQIGMLALSYEKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLEGIK 246 (577)
T ss_pred HHHHHHHHHHHHHhccccccCCCCcchHHHHHHHHHHHHHHhCcccchHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 99988765321 1111 0 10 1111 11 11111 223446777889999
Q ss_pred HHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCcccc
Q psy1869 133 KVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMP 180 (205)
Q Consensus 133 ~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~ 180 (205)
++|.+|| |.||.++++.+..+.+.+.++++.|.++|++|+.+++.+
T Consensus 247 ~~l~~l~--V~fD~~~~E~e~~~~~~~~~vv~~L~~~~~~~e~~GA~~ 292 (577)
T COG0018 247 ETLDRLG--VKFDVYDSEGESFYNGKVEKVVEDLEEKGLLYEDDGALV 292 (577)
T ss_pred HHHHHhC--cccceeeccchhhhcccHHHHHHHHHhcCCEeeeCCeEE
Confidence 9999999 999999999999999999999999999999999888863
No 58
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=99.83 E-value=2.4e-20 Score=157.00 Aligned_cols=129 Identities=16% Similarity=0.175 Sum_probs=107.6
Q ss_pred CCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHH
Q psy1869 37 GKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQY 116 (205)
Q Consensus 37 ~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~ 116 (205)
+..++-++...|+|...+||||+|++|..|+|.||++..|++|++++++.+.+++|..+|.+. |+
T Consensus 5 ~~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~-g~-------------- 69 (300)
T PF01406_consen 5 NPGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREE-GV-------------- 69 (300)
T ss_dssp CTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHT-TS--------------
T ss_pred CCCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhc-cC--------------
Confidence 445688888999999999999999999999999999999999999999999999999999986 76
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecC-ccccccCCC
Q psy1869 117 NLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGV-KVMPYSTAC 185 (205)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~-~~v~~~~~~ 185 (205)
...+++++|.+.+.++|++||+.-....+. ...+...+.+++++|+++|++|+.. +.|||++..
T Consensus 70 --~~~ela~~y~~~f~~dm~~Lnv~~p~~~pr---ate~i~~ii~~i~~Li~~G~AY~~~~g~VYFdv~~ 134 (300)
T PF01406_consen 70 --SPQELARRYEEEFFEDMKALNVLPPDHYPR---ATEHIPEIIELIEKLIDKGHAYESEDGSVYFDVSK 134 (300)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTT----SEEEE---GGGGHHHHHHHHHHHHHTTSEEEETTSEEEE-CCG
T ss_pred --CHHHHHHHHHHHHHHHHHHcCCCCCccccc---hhccHHHHHHHHHHHHHCCCeEEcCCCcEEEeecc
Confidence 578899999999999999999433322233 3489999999999999999999999 999999874
No 59
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=99.82 E-value=7.3e-20 Score=159.38 Aligned_cols=161 Identities=17% Similarity=0.197 Sum_probs=114.0
Q ss_pred HHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHH
Q psy1869 19 LRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDK 98 (205)
Q Consensus 19 ~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~ 98 (205)
.+.-++...|. . ...++++++|-.+.|||+|||||||+|+.++||+|+|++++.||+|.....+++.|.++...+..
T Consensus 3 ~~il~~~~~y~-~--~~~~~~kv~VE~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q~~~l~~~ 79 (354)
T PF00750_consen 3 NEILEKGEEYG-S--EKGKGKKVVVEFSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQIGLLAAS 79 (354)
T ss_dssp HHHHHHGGGTT-----TTTSEEEEEEE---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHHHHHHHHH
T ss_pred HHHHhcchhcc-c--ccCCCCEEEEEecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHHHHHHHHH
Confidence 34455566562 2 23467789999999999999999999999999999999999999999999999999998876432
Q ss_pred H--hCC-----CCCh-------------------------hhhhcCHHHHHH------HHHHHHHH-HHHHHHHHHHHhc
Q psy1869 99 K--LGI-----KGPA-------------------------DVAKMGIAQYNL------ECRKIVMR-YSSEWEKVVKRIG 139 (205)
Q Consensus 99 ~--~g~-----~~~~-------------------------~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~l~~lg 139 (205)
. .+. ..+. .+.....+.+.. ...++... +++.++++|++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~~~~~~~~~~k~~l~~l~ 159 (354)
T PF00750_consen 80 YKKFGDEELLEEDPIKHLEDLYVGANKRDEADEIAEKEPEELEEEAREYLKKLEQGDEEFRELWQKYILEWSKETLQRLY 159 (354)
T ss_dssp HHHHHHHHTSHSSCHHHHHHHHHHHHHHHHHTTCSSGCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhhhhhhcccccccchhhhhhhhhhhhhhhhhccccccccccccceeeeecccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 011 0010 000000111111 13334444 7789999999999
Q ss_pred cccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCC
Q psy1869 140 RWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTA 184 (205)
Q Consensus 140 ~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~ 184 (205)
+.+|.++++.+..+.+.+.+++++|.++|++|+.+++.|....
T Consensus 160 --i~fDv~~~E~Es~~~~~v~~vl~~L~e~g~~~~~dGa~~i~~~ 202 (354)
T PF00750_consen 160 --IRFDVWFDESESFYSGKVDEVLERLKEKGLLYESDGALWIDLT 202 (354)
T ss_dssp -----SEEEEHCHHHHTTHHHHHHHHHHCTTTEEEETTEEEEEGC
T ss_pred --HHhCcCcccchhhhhhHHHHHHHHHHhCCcEEecCCcEEEech
Confidence 9999999997778889999999999999999999999888765
No 60
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=99.79 E-value=5.5e-19 Score=162.34 Aligned_cols=143 Identities=17% Similarity=0.141 Sum_probs=114.4
Q ss_pred CCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHH--hCCCC-------Ch--
Q psy1869 38 KPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKK--LGIKG-------PA-- 106 (205)
Q Consensus 38 ~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~--~g~~~-------~~-- 106 (205)
++++.|..+.|||+|+|||||+|+++++|+|+|++++.||+|...+.++|.|.++...+... .+.+. |.
T Consensus 111 ~~~v~ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~~~ 190 (566)
T TIGR00456 111 NKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGRQFGLLALGVEKFGNEKLNEAVKKPDHG 190 (566)
T ss_pred CCeEEEEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchHHHHHHHHHHHHHhCCccccCcccCChHH
Confidence 56899999999999999999999999999999999999999999999999999988775432 12110 10
Q ss_pred ----------hh------hh----------cCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHH
Q psy1869 107 ----------DV------AK----------MGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIW 160 (205)
Q Consensus 107 ----------~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~ 160 (205)
.. .+ .+.++....-+..++..++.++++|++|| |.||.++++.+..+.+.+.
T Consensus 191 ~~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~w~~~~~~~l~~~~~~~~~l~--V~fD~~~~E~e~~~~~~~~ 268 (566)
T TIGR00456 191 LEGFYVEINKRLEENEELEEEARELFVKLESGDEEAIKLWKRLVEYSLEGIKETLARLN--IHFDSFVWEGESVKNGMVP 268 (566)
T ss_pred HHHHHHHHHHHHhhCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHcC--CceeeeeccccccccccHH
Confidence 00 00 11112222334566678899999999999 9999999998888999999
Q ss_pred HHHHHHHHCCCeeecCccccccC
Q psy1869 161 WVFSELWNKGLVYRGVKVMPYST 183 (205)
Q Consensus 161 ~~~~~L~~kG~iy~~~~~v~~~~ 183 (205)
.++++|.++|++|++ +++|.+.
T Consensus 269 ~v~~~L~~~g~~~~~-Ga~~~~~ 290 (566)
T TIGR00456 269 KVLEDLKEKGLVVED-GALWLDL 290 (566)
T ss_pred HHHHHHHHCCCEEEc-CCEEEEc
Confidence 999999999999988 8888764
No 61
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=8.9e-19 Score=154.48 Aligned_cols=127 Identities=17% Similarity=0.161 Sum_probs=114.1
Q ss_pred CeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHH
Q psy1869 40 RYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLE 119 (205)
Q Consensus 40 ~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~ 119 (205)
++-++...|+|....||||+|++|..|++.||++..||.|.++.++.+-+++|...|.+. |. .
T Consensus 22 ~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~-g~----------------~ 84 (464)
T COG0215 22 KVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREE-GL----------------S 84 (464)
T ss_pred eEEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHh-CC----------------C
Confidence 388888899999999999999999999999999999999999999999999999999987 75 4
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeec-CccccccCCCC
Q psy1869 120 CRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRG-VKVMPYSTACN 186 (205)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~-~~~v~~~~~~~ 186 (205)
+++++++|+..+.+++.+||+.-.-..+..| .|+..+.+++++|+++|++|.. ++.|||+++.-
T Consensus 85 ~~ev~~~~i~~f~~D~~aL~v~~p~~~PraT---e~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~f 149 (464)
T COG0215 85 IREVAERYIAAFFEDMDALNVLPPDIEPRAT---EHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKF 149 (464)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcccCcHh---hCHHHHHHHHHHHHHCCceEEecCCcEEEecccc
Confidence 7899999999999999999953233445555 8999999999999999999998 68999998863
No 62
>KOG1247|consensus
Probab=99.78 E-value=9.6e-20 Score=156.89 Aligned_cols=142 Identities=22% Similarity=0.274 Sum_probs=134.1
Q ss_pred CCCCCeEEecCCCCCCCcCchhHHhH-hHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHH
Q psy1869 36 KGKPRYSFYDGPPFATGLPHYGHILA-GAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIA 114 (205)
Q Consensus 36 ~~~~~~~i~~~~P~p~G~LHiGH~r~-~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~ 114 (205)
.|....+++.+-||+|..+|+|++-+ ...+||+|||.+.+|+...+++|+|+.|..++..|-+. |+
T Consensus 11 ~n~rnilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~~~yicGTDEYgtatetkalee-g~------------ 77 (567)
T KOG1247|consen 11 PNERNILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPNTLYICGTDEYGTATETKALEE-GL------------ 77 (567)
T ss_pred CCccceeeecccceecccccccceeeEEeehhhhcccccCCCCceEEeccccccchhhHHHHHHc-cC------------
Confidence 45667999999999999999999998 44599999999999999999999999999999999987 77
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCCCCccCcccc
Q psy1869 115 QYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFES 194 (205)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev 194 (205)
.++++|++++..+.....+++ ||+|.+-+|+.+...+.++.+|.+|.++|++-+....+.||..|+++|+|..|
T Consensus 78 ----tP~elcdKyh~ihk~vy~Wf~--IdfD~fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc~~fladr~v 151 (567)
T KOG1247|consen 78 ----TPQELCDKYHGIHKVVYDWFK--IDFDEFGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVCDTFLADRFV 151 (567)
T ss_pred ----CHHHHHHhcchhHHHHHHhhc--ccccccCcccCcchhHHHHHHhhchhhcCCcccceeeeEEehhhcccccchhh
Confidence 479999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q psy1869 195 GQ 196 (205)
Q Consensus 195 ~~ 196 (205)
+.
T Consensus 152 eg 153 (567)
T KOG1247|consen 152 EG 153 (567)
T ss_pred hc
Confidence 75
No 63
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=99.78 E-value=2.6e-18 Score=157.65 Aligned_cols=143 Identities=13% Similarity=0.104 Sum_probs=109.1
Q ss_pred CCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHH--hCCCC--Chh-----
Q psy1869 37 GKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKK--LGIKG--PAD----- 107 (205)
Q Consensus 37 ~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~--~g~~~--~~~----- 107 (205)
++++++|-...|||+|||||||+||+++||+|+|+++..||+|...+.++|.|.++...+... +|.+. +..
T Consensus 111 ~~~~v~vE~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G~Q~~~l~~~~~~~~~~~~~~~~~~~~l 190 (562)
T PRK12451 111 CEKTVVIDYSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIREL 190 (562)
T ss_pred CCCEEEEEecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCchHHHHHHHHHHHHhCCccccccCchHHH
Confidence 357899999999999999999999999999999999999999999999999999988775432 24321 100
Q ss_pred ----------------hhhcCH----------HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHH
Q psy1869 108 ----------------VAKMGI----------AQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWW 161 (205)
Q Consensus 108 ----------------~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~ 161 (205)
+.+... ++....-+.+++..++.++++|++|| |.|| +++..+ .|.+.+.+
T Consensus 191 ~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~~w~~~~~~~l~~~~~~~~~l~--V~fD-~~~~es-~~~~~~~~ 266 (562)
T PRK12451 191 FKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLG--VEFT-NFQGEA-FYNDLMED 266 (562)
T ss_pred HHHHHHHHHhhccChhHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcC--CCce-eecchH-hhhhhHHH
Confidence 001111 11111234556667789999999999 8888 443333 56677899
Q ss_pred HHHHHHHCCCeeecCccccccC
Q psy1869 162 VFSELWNKGLVYRGVKVMPYST 183 (205)
Q Consensus 162 ~~~~L~~kG~iy~~~~~v~~~~ 183 (205)
++++|.++|++|+.+++.|.+.
T Consensus 267 v~~~L~~~g~~~e~dGa~~~~~ 288 (562)
T PRK12451 267 FIGILEEHDLLEESEGALVVNL 288 (562)
T ss_pred HHHHHHHCCCEEecCCeEEEEe
Confidence 9999999999999999988653
No 64
>PLN02286 arginine-tRNA ligase
Probab=99.75 E-value=1.2e-17 Score=153.49 Aligned_cols=141 Identities=23% Similarity=0.190 Sum_probs=107.4
Q ss_pred CCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHH---hCCCC-Ch--h---
Q psy1869 37 GKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKK---LGIKG-PA--D--- 107 (205)
Q Consensus 37 ~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~---~g~~~-~~--~--- 107 (205)
++++++|-...|||+|||||||+|++++||+|+|+++..||+|...+.++|.|.++...+... ++... +. .
T Consensus 115 ~~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~~~~~~~~~~~i~~ 194 (576)
T PLN02286 115 PVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKFPNWESVSDQAIGD 194 (576)
T ss_pred CCceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhcCcccccCcccHHH
Confidence 447899999999999999999999999999999999999999999999999999988776443 22210 00 0
Q ss_pred -----------------hhhc----------CHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHH
Q psy1869 108 -----------------VAKM----------GIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIW 160 (205)
Q Consensus 108 -----------------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~ 160 (205)
+.+. +.++....-+..++..+..+++++.+|| |.+|.+ -+..|...+.
T Consensus 195 l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~--V~fd~~---ges~y~~~~~ 269 (576)
T PLN02286 195 LQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLR--VELEEK---GESFYNPYIP 269 (576)
T ss_pred HHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhC--Ceeeec---CchhhhhhHH
Confidence 0111 1111112223455667789999999999 777762 2345677789
Q ss_pred HHHHHHHHCCCeeecCcccccc
Q psy1869 161 WVFSELWNKGLVYRGVKVMPYS 182 (205)
Q Consensus 161 ~~~~~L~~kG~iy~~~~~v~~~ 182 (205)
+++++|.++|++|+.+++.|.+
T Consensus 270 ~vi~~L~~~g~~~e~dGa~~v~ 291 (576)
T PLN02286 270 GVIEELESKGLVVESDGARVIF 291 (576)
T ss_pred HHHHHHHHCCCEEeeCCceEee
Confidence 9999999999999999998764
No 65
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=99.74 E-value=6.3e-18 Score=146.45 Aligned_cols=140 Identities=19% Similarity=0.285 Sum_probs=101.1
Q ss_pred CCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCH------HHHHHHHHHhCCCCChhhhhc
Q psy1869 38 KPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGL------PVEFEIDKKLGIKGPADVAKM 111 (205)
Q Consensus 38 ~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~------~i~~~a~~~~g~~~~~~~~~~ 111 (205)
+++++|.+|. +|||.+||||++..+.+|+++|++|++|++|.+++|+|+||. .+....++.+|..-. .+
T Consensus 18 ~~~~~v~tgi-~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~-~i--- 92 (353)
T cd00674 18 KEKYVVASGI-SPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLS-SV--- 92 (353)
T ss_pred CCeEEEecCC-CCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccch-hc---
Confidence 4567777777 599999999999999999999999999999999999999942 122224555565210 00
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeee------cC------c-c
Q psy1869 112 GIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYR------GV------K-V 178 (205)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~------~~------~-~ 178 (205)
++.+ ..+..+++++...+++.|..|| |+++.+.+|.........+.++..|.+++.|.+ +. . .
T Consensus 93 -p~p~-g~~~~~~d~~~~~f~~~l~~lg--i~~d~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~~~~P~ 168 (353)
T cd00674 93 -PDPF-GCCESYAEHFERPFEESLEKLG--IEVEFISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQETWYPF 168 (353)
T ss_pred -hhhc-CCCHHHHHHHHHHHHHHHHHcC--CeeeeeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCCCceee
Confidence 0111 1255899999999999999999 888855454444445667788888888888642 11 1 2
Q ss_pred ccccCCCC
Q psy1869 179 MPYSTACN 186 (205)
Q Consensus 179 v~~~~~~~ 186 (205)
.++|++|+
T Consensus 169 ~p~c~~cg 176 (353)
T cd00674 169 MPYCEKCG 176 (353)
T ss_pred eeecCCcC
Confidence 56799998
No 66
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.67 E-value=1.9e-16 Score=120.99 Aligned_cols=59 Identities=20% Similarity=0.100 Sum_probs=55.3
Q ss_pred EecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCC
Q psy1869 43 FYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGI 102 (205)
Q Consensus 43 i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~ 102 (205)
|+.++|||||+|||||+|+++++|+++|++|++|++|.++.|+|++|.++...+.+. +.
T Consensus 1 ~~~~~p~~~~~~HlGh~~~~~~~d~~~r~lr~~G~~v~~~~~~dd~~~~~~~~a~~~-~~ 59 (143)
T cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIGDPANKK-GE 59 (143)
T ss_pred CEecCCCCCCCccHhHHHHHHHHHHHHHHHHHcCCCeEEEeeeCCCchHHHHHHHhc-CC
Confidence 467899999999999999999999999999999999999999999999999999876 44
No 67
>KOG2007|consensus
Probab=99.63 E-value=2e-15 Score=132.86 Aligned_cols=135 Identities=15% Similarity=0.170 Sum_probs=108.4
Q ss_pred CCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHH-HCCCccccccccCCCCHHHHHHHHHH-hCCCCChhhhhcCHH
Q psy1869 37 GKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAH-QNGFHVERRFGWDCHGLPVEFEIDKK-LGIKGPADVAKMGIA 114 (205)
Q Consensus 37 ~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r-~~G~~V~~~~G~d~~G~~i~~~a~~~-~g~~~~~~~~~~~~~ 114 (205)
++.++..+...|++...-||||||+||-.|||-|+++ ..||+|.+++++.+-+++|...|.+. .+.. +..+
T Consensus 52 ~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RAr~~~m~e~-~~~l------ 124 (586)
T KOG2007|consen 52 NGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRARKEEMGEK-PLSL------ 124 (586)
T ss_pred CCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHhhhhhhccc-hhhH------
Confidence 4556888888999999999999999999999999999 89999999999999999999999632 2321 2111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCCCC
Q psy1869 115 QYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNT 187 (205)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~~~ 187 (205)
.+.++ .|.+.+.+++.+|+|.-. -..|.-..|...+..++++++++|++|..++.||||+..-.
T Consensus 125 -----~~~F~-~~e~eF~~DM~~LnvLpP---tv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf~ 188 (586)
T KOG2007|consen 125 -----SERFC-YYEEEFLQDMAALNVLPP---TVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKFP 188 (586)
T ss_pred -----HHHHH-HHHHHHHHHHHHhCCCCC---cccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEeccccc
Confidence 11122 577899999999995432 23343458999999999999999999999999999987543
No 68
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=99.59 E-value=8.7e-16 Score=139.43 Aligned_cols=141 Identities=18% Similarity=0.220 Sum_probs=96.9
Q ss_pred CeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCC--------HHHHHHHHHHhCCCCChhhhhc
Q psy1869 40 RYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHG--------LPVEFEIDKKLGIKGPADVAKM 111 (205)
Q Consensus 40 ~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G--------~~i~~~a~~~~g~~~~~~~~~~ 111 (205)
.++|.+|. +|||.+||||++..+.+|+++|++|..|++|.+++|+|+|| .|....+++.+|..-...
T Consensus 24 ~~~~~~g~-~psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~G~pl~~~---- 98 (510)
T PRK00750 24 PVVVETGI-GPSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYLGKPLTEI---- 98 (510)
T ss_pred cEEEEeCC-CCCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcccccCCCCCchHHHHHhcCcccccC----
Confidence 45555555 69999999999999999999999999999999999999998 444334566667620000
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhH-HHHHHHHHHHHHCCCeee------cC-------c
Q psy1869 112 GIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYM-ESIWWVFSELWNKGLVYR------GV-------K 177 (205)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~-~~v~~~~~~L~~kG~iy~------~~-------~ 177 (205)
++.+- .+..+++++.+.+.+.+..+| |++|.+..| +.+.. ...+.+...|.+++.|.+ +. -
T Consensus 99 -p~p~G-~~~~~~~~~~~~~~~~~~~~g--i~~d~~~~t-~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~~~~~~~~P 173 (510)
T PRK00750 99 -PDPFG-CHESYAEHFNAPLREFLDRFG--IEYEFISAT-ECYKSGRYDEAILTALENRDEIMEILLPYLGEERQATYSP 173 (510)
T ss_pred -CCCCC-CchHHHHHHHHHHHHHHHHcC--CceEEEehh-hhhccCchHHHHHHHHHhHHHHHHHHHHhcCCccCCCeee
Confidence 01111 268899999999999999999 888844444 43322 333333344444444321 11 1
Q ss_pred cccccCCCCCccC
Q psy1869 178 VMPYSTACNTPLS 190 (205)
Q Consensus 178 ~v~~~~~~~~~ls 190 (205)
..++|++|++.++
T Consensus 174 ~~pic~~cg~~~~ 186 (510)
T PRK00750 174 FLPICPKCGKVLT 186 (510)
T ss_pred eeeeCCCCCccce
Confidence 2678999998876
No 69
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=99.39 E-value=2.5e-13 Score=123.15 Aligned_cols=140 Identities=14% Similarity=0.132 Sum_probs=90.5
Q ss_pred CCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCC--------CHHHHHHHHHHhCCCCChhhhh
Q psy1869 39 PRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCH--------GLPVEFEIDKKLGIKGPADVAK 110 (205)
Q Consensus 39 ~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~--------G~~i~~~a~~~~g~~~~~~~~~ 110 (205)
++++|.+|.+ |||.+||||++..+.+|+++|++|++|++|.+++|+|++ +.| ...++.+|..- ..+
T Consensus 18 ~~~~~~tg~~-psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p--~~~~~ylG~Pl-~~v-- 91 (515)
T TIGR00467 18 NLYTVASGIT-PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLP--EELETYLGMPL-TRI-- 91 (515)
T ss_pred CeEEEecCCC-CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCccccccccccc--HHHHHhCCCcc-eec--
Confidence 4677777777 999999999999999999999999999999999999999 233 23444444310 000
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccCh----hhHHHHHHHHHHHHH--------CCCeeecC-c
Q psy1869 111 MGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYP----WYMESIWWVFSELWN--------KGLVYRGV-K 177 (205)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~----~~~~~v~~~~~~L~~--------kG~iy~~~-~ 177 (205)
++.|- .+..++++|...+.+.|..|| |+++....| +. .|.+.+..+++.-.+ .|-=...+ .
T Consensus 92 --pdp~g-~~~s~~~h~~~~~~~~l~~~g--i~~e~~s~t-e~Y~sG~~~~~i~~~L~~~~~I~~il~~~~~~~~~~~~~ 165 (515)
T TIGR00467 92 --PDPEG-CKTSYAEHFLIPFLESLPVLG--INPEFIRAS-KQYTSGLYASQIKIALDHRKEISEILNEYRTSKLEENWY 165 (515)
T ss_pred --CCCCC-CcHHHHHHHHHHHHHHHHHcC--CeEEEEEHH-HhhhcCChHHHHHHHHHhHHHHHHHHHHhcCCccCCCce
Confidence 00000 247889999999999999999 665443332 22 233333333321111 11101111 2
Q ss_pred -cccccCCCCCccC
Q psy1869 178 -VMPYSTACNTPLS 190 (205)
Q Consensus 178 -~v~~~~~~~~~ls 190 (205)
..++|++|++.++
T Consensus 166 P~~pic~~cGrv~~ 179 (515)
T TIGR00467 166 PISVFCENCGRDTT 179 (515)
T ss_pred eeeeecCCcCccCc
Confidence 2678999998876
No 70
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=99.26 E-value=1.6e-11 Score=101.27 Aligned_cols=95 Identities=14% Similarity=0.084 Sum_probs=73.2
Q ss_pred EecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHH
Q psy1869 43 FYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRK 122 (205)
Q Consensus 43 i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~ 122 (205)
++--+|+|||.|||||+|++++.++++| ++.+.++.-++|...+.. .++.
T Consensus 3 ~~RfaPsPtG~lHiG~~rtal~~~l~Ar-----~~~G~~ilRieDtD~~r~-------------------------~~~~ 52 (240)
T cd09287 3 VMRFAPNPNGPLHLGHARAAILNGEYAK-----MYGGKFILRFDDTDPRTK-------------------------RPDP 52 (240)
T ss_pred eEeCCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEeeCcCCCCcc-------------------------cchH
Confidence 4456899999999999999999999999 677777777777544432 0111
Q ss_pred HHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeee
Q psy1869 123 IVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 123 ~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
. +.+.|.++|++|| ++||..+. ...+.+...+++++|+++|++|.
T Consensus 53 ~---~~~~i~~dL~wLG--l~~d~~~~--qS~r~~~y~~~~~~Li~~G~aY~ 97 (240)
T cd09287 53 E---AYDMIPEDLEWLG--VKWDEVVI--ASDRIELYYEYARKLIEMGGAYV 97 (240)
T ss_pred H---HHHHHHHHHHHcC--CCCCCccc--hhccHHHHHHHHHHHHHcCCccc
Confidence 1 3446899999999 89996544 33567788888999999999996
No 71
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=99.23 E-value=3.7e-11 Score=109.68 Aligned_cols=130 Identities=13% Similarity=0.058 Sum_probs=88.7
Q ss_pred CCCchHHHHHHHHHHHhcCcchhh--------hhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCcc
Q psy1869 8 YIDFAKEEENILRFWKEHEIFQEC--------LKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHV 79 (205)
Q Consensus 8 ~~~~~~~e~~~~~~w~~~~~~~~~--------~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V 79 (205)
.-++.+.++++.+.|-+.-.-+.. +......+.-+++--+|+|||+|||||+|++++.+.+|| +|..
T Consensus 60 ~ms~ee~~~~l~~~~pe~~~~~~~~~~~~~~lp~L~~ae~g~V~tRFaPsPtG~LHIGharaalln~~~Ar-----~~~G 134 (567)
T PRK04156 60 SLSLEEQRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKGKVVMRFAPNPSGPLHLGHARAAILNDEYAK-----MYGG 134 (567)
T ss_pred cCCHHHHHHHHHHhChhhhhhhhhhcccccCCCCCCCCCCCeEEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCC
Confidence 456677777888877754111111 111111133466678999999999999999999999999 4555
Q ss_pred ccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHH
Q psy1869 80 ERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESI 159 (205)
Q Consensus 80 ~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v 159 (205)
.++.-+||....+.. + ...+.+.|.++|++|| ++||..+.. +.+....
T Consensus 135 ~~iLRidDTDpk~~R-------------------------~---~~e~~~~I~edL~wLG--l~wD~~~~q--Sdr~~~y 182 (567)
T PRK04156 135 KFILRFEDTDPRTKR-------------------------P---DPEAYDMILEDLKWLG--VKWDEVVIQ--SDRLEIY 182 (567)
T ss_pred EEEEeEccCCCCccc-------------------------c---hHHHHHHHHHHHHHcC--CCCCCccCc--ccCHHHH
Confidence 566566664332211 0 0124578999999999 899976553 3567888
Q ss_pred HHHHHHHHHCCCeee
Q psy1869 160 WWVFSELWNKGLVYR 174 (205)
Q Consensus 160 ~~~~~~L~~kG~iy~ 174 (205)
.+..++|+++|++|.
T Consensus 183 ~~~a~~Li~~G~AY~ 197 (567)
T PRK04156 183 YEYARKLIEMGGAYV 197 (567)
T ss_pred HHHHHHHHHcCCCcc
Confidence 889999999999995
No 72
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=99.06 E-value=7.7e-10 Score=101.04 Aligned_cols=96 Identities=15% Similarity=0.094 Sum_probs=72.5
Q ss_pred CeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHH
Q psy1869 40 RYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLE 119 (205)
Q Consensus 40 ~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~ 119 (205)
.-+++-=||+|||+|||||++++++.+.+||- ..| .++.-+||.... +
T Consensus 92 ~~vvtRFaPsPtG~LHiGharaalln~~~Ar~--~~G---~~iLRidDTDp~------R--------------------- 139 (560)
T TIGR00463 92 GEVVMRFAPNPSGPLHIGHARAAILNQYFAKK--YKG---KLIIRFDDTDPR------R--------------------- 139 (560)
T ss_pred CeeEEEeCCCCCCCccHHHHHHHHHHHHHHHh--cCC---EEEEEeCcCCcc------c---------------------
Confidence 34778889999999999999999999999972 244 444444553221 0
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeee
Q psy1869 120 CRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
+ ...+.+.|.++|++|| +.||..+. .+.+.....+.+.+|+++|++|.
T Consensus 140 ~---~~e~~~~I~edL~wLG--i~~d~~~~--qSd~~~~y~~~a~~Li~~G~AY~ 187 (560)
T TIGR00463 140 V---KPEAYDMILEDLDWLG--VKGDEVVY--QSDRIEEYYDYCRKLIEMGKAYV 187 (560)
T ss_pred c---cHHHHHHHHHHHHHcC--CCCCcccc--ccccHHHHHHHHHHHHHcCCcee
Confidence 0 0126779999999999 88987554 34667888999999999999995
No 73
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=99.04 E-value=5.8e-10 Score=99.50 Aligned_cols=93 Identities=19% Similarity=0.256 Sum_probs=69.4
Q ss_pred EecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHH
Q psy1869 43 FYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRK 122 (205)
Q Consensus 43 i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~ 122 (205)
.+-=+|.|||.|||||+|++++.-.+||-. .|.-++.+ +|.+. ..
T Consensus 4 r~RFAPSPTG~lHiG~artAL~n~l~Ar~~--gG~fiLRI---EDTD~------------------------------~R 48 (445)
T PRK12558 4 ITRFAPSPTGYLHVGNARTALLNWLYARKH--GGKFILRI---DDTDL------------------------------ER 48 (445)
T ss_pred eEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEe---ccCCc------------------------------cc
Confidence 344579999999999999999887777754 55555444 43321 00
Q ss_pred HHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeee
Q psy1869 123 IVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 123 ~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
....+.+.|.++|++|| |+||.+++.++.. +.+.+++++|.++|++|.
T Consensus 49 s~~~~~~~I~e~L~wLG--I~~De~y~QSer~--~~y~~~~e~L~e~G~AY~ 96 (445)
T PRK12558 49 SKQEYADAIAEDLKWLG--INWDRTFRQSDRF--DRYDEAAEKLKAAGRLYP 96 (445)
T ss_pred chHHHHHHHHHHHHHcC--CCCCccccHHHHH--HHHHHHHHHHHHCCCEEE
Confidence 11236779999999999 9999888775543 578999999999999994
No 74
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=1.1e-09 Score=98.34 Aligned_cols=94 Identities=19% Similarity=0.182 Sum_probs=73.4
Q ss_pred EEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHH
Q psy1869 42 SFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECR 121 (205)
Q Consensus 42 ~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~ 121 (205)
+++-=+|+|||.|||||||++++-..+||-. .|.-++.+=-+|- . .
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~--~G~fiLRiEDTD~---------~---R-------------------- 55 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKY--GGKFILRIEDTDP---------E---R-------------------- 55 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHh--CCEEEEEecCCCC---------C---C--------------------
Confidence 7778899999999999999999999999977 7877777643332 0 0
Q ss_pred HHHHHHHHHHHHHHHHhccccccCC-ceeccChhhHHHHHHHHHHHHHCCCeee
Q psy1869 122 KIVMRYSSEWEKVVKRIGRWIDFDN-DYKTLYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 122 ~~~~~~~~~~~~~l~~lg~~i~~d~-~~~T~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
-...+.+.|.++|++|| ++||. .+.. +.+.....++..+|+++|++|.
T Consensus 56 -~~~e~~~~I~~~L~WLG--l~wde~~~~Q--S~r~~~Y~~~~~~Li~~G~AY~ 104 (472)
T COG0008 56 -ETPEAEDAILEDLEWLG--LDWDEGPYYQ--SERFDIYYEYAEKLIEKGKAYV 104 (472)
T ss_pred -CCHHHHHHHHHHHHhcC--CCCCCceeeh--hhhHHHHHHHHHHHHHCCCeEE
Confidence 01125679999999999 99999 4553 2566777788889999999993
No 75
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.97 E-value=1.7e-09 Score=88.97 Aligned_cols=93 Identities=20% Similarity=0.140 Sum_probs=69.9
Q ss_pred EecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHH
Q psy1869 43 FYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRK 122 (205)
Q Consensus 43 i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~ 122 (205)
++-=+|+|||+||+||++++++...+||-. .|.-++.+=-+|. + .++
T Consensus 3 ~~RFAPsPtG~lHlG~~~~al~~~l~Ar~~--~G~~iLRieDtD~---~---------------------------R~~- 49 (238)
T cd00807 3 VTRFPPEPNGYLHIGHAKAILLNFGYAKKY--GGRCNLRFDDTNP---E---------------------------KEE- 49 (238)
T ss_pred eEecCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEecCCCC---c---------------------------ccc-
Confidence 344579999999999999999999999865 6766655522221 0 011
Q ss_pred HHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeee
Q psy1869 123 IVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 123 ~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
..+.+.|.++|++|| ++||..+.. ..+.+...++..+|+++|.+|.
T Consensus 50 --~~~~~~I~~dL~wlG--l~wD~~~~Q--S~r~~~Y~~~~~~L~~~g~aY~ 95 (238)
T cd00807 50 --EEYVDSIKEDVKWLG--IKPYKVTYA--SDYFDQLYEYAEQLIKKGKAYV 95 (238)
T ss_pred --hHHHHHHHHHHHHcC--CCCCCceec--ccCHHHHHHHHHHHHHcCCeec
Confidence 126678999999999 999965443 3556778888999999999998
No 76
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=98.97 E-value=2.4e-09 Score=90.04 Aligned_cols=89 Identities=18% Similarity=0.186 Sum_probs=68.0
Q ss_pred CCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHH
Q psy1869 46 GPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVM 125 (205)
Q Consensus 46 ~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 125 (205)
=+|.|||.|||||+|++++...+|| +..|.-++.+=-+|.. . + ..
T Consensus 5 FAPSPtG~lHiG~~rtAL~n~l~Ar--~~gG~~iLRiEDtD~~------------R------------------~---~~ 49 (272)
T TIGR03838 5 FAPSPSGPLHFGSLVAALGSYLDAR--AHGGRWLVRIEDLDPP------------R------------------E---VP 49 (272)
T ss_pred eCCCCCCcccHHHHHHHHHHHHHHH--HhCCEEEEEeCcCCCC------------C------------------C---Ch
Confidence 3699999999999999999999999 4477777766443320 0 0 11
Q ss_pred HHHHHHHHHHHHhccccccCCc-eeccChhhHHHHHHHHHHHHHCCCee
Q psy1869 126 RYSSEWEKVVKRIGRWIDFDND-YKTLYPWYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 126 ~~~~~~~~~l~~lg~~i~~d~~-~~T~~~~~~~~v~~~~~~L~~kG~iy 173 (205)
.+.+.|.++|++|| ++||.. +..+ .+.+.-.+++++|+++|++|
T Consensus 50 ~~~~~I~~dL~wLG--l~wDe~~~~QS--~r~~~Y~~~~~~L~~~G~aY 94 (272)
T TIGR03838 50 GAADDILRTLEAYG--LHWDGEVVYQS--QRHALYQAALDRLLAAGLAY 94 (272)
T ss_pred HHHHHHHHHHHHcC--CCCCCCeeeee--CCHHHHHHHHHHHHHcCCEE
Confidence 25678999999999 999953 3332 45678888889999999999
No 77
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=98.96 E-value=1.5e-09 Score=98.18 Aligned_cols=95 Identities=24% Similarity=0.192 Sum_probs=73.1
Q ss_pred eEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHH
Q psy1869 41 YSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLEC 120 (205)
Q Consensus 41 ~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~ 120 (205)
-+++-=+|.|||.|||||||++++...+||-. .|.-++.+=-+|-
T Consensus 11 ~v~tRFAPsPtG~LHiGharaAlln~l~Ar~~--gG~~iLRiEDTDp--------------------------------- 55 (523)
T PLN03233 11 QIVTRFPPEPSGYLHIGHAKAALLNDYYARRY--KGRLILRFDDTNP--------------------------------- 55 (523)
T ss_pred eEEEeeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEECCCCC---------------------------------
Confidence 47788899999999999999999999999854 6766665522221
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeee
Q psy1869 121 RKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 121 ~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
.+-...+.+.|.++|++|| ++||..+.+ +.+.+...+...+|+++|.+|.
T Consensus 56 ~R~~~e~~~~I~~dL~WLG--l~wD~~~~q--Sdr~~~y~~~a~~Li~~G~AY~ 105 (523)
T PLN03233 56 SKEKAEFEESIIEDLGKIE--IKPDSVSFT--SDYFEPIRCYAIILIEEGLAYM 105 (523)
T ss_pred CccchHHHHHHHHHHHHhC--CCCCCCccc--cccHHHHHHHHHHHHHcCCeEe
Confidence 0001236789999999999 999976554 3557788888999999999994
No 78
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=98.93 E-value=4.3e-09 Score=90.45 Aligned_cols=91 Identities=22% Similarity=0.296 Sum_probs=62.3
Q ss_pred cCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHH
Q psy1869 45 DGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIV 124 (205)
Q Consensus 45 ~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 124 (205)
-=+|.|||+|||||+|++++...+|| +..|.-++.+=-+|. . .++
T Consensus 5 RFAPsPtG~lHiG~~r~al~n~~~Ar--~~~G~~iLRieDtD~---~---------------------------R~~--- 49 (314)
T PF00749_consen 5 RFAPSPTGYLHIGHARTALLNYLFAR--KYGGKFILRIEDTDP---E---------------------------RCR--- 49 (314)
T ss_dssp EE---SSSS-BHHHHHHHHHHHHHHH--HTTSEEEEEEETSST---T---------------------------TCH---
T ss_pred eeCCCCCCCcccchhHHHHHHHHHHh--ccCceEEEecccccc---c---------------------------cch---
Confidence 34799999999999999999999999 447777776633332 0 011
Q ss_pred HHHHHHHHHHHHHhccccccC-CceeccChhhHHHHHHHHHHHHHCCCeee
Q psy1869 125 MRYSSEWEKVVKRIGRWIDFD-NDYKTLYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 125 ~~~~~~~~~~l~~lg~~i~~d-~~~~T~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
..+.+.|.++|++|| ++|| ..+.. +.+.+...+++++|+++|.+|.
T Consensus 50 ~~~~~~i~~~L~wlG--l~~D~~~~~Q--S~r~~~Y~~~~~~L~~~g~aY~ 96 (314)
T PF00749_consen 50 PEFYDAILEDLRWLG--LEWDYGPYYQ--SDRLEIYQEAAEKLIDKGKAYP 96 (314)
T ss_dssp HHHHHHHHHHHHHHT-----STCEEEG--GGGHHHHHHHHHHHHHTTSEEE
T ss_pred hhHHHHHHhheeEEE--EecCCeEEeH--HHHHHHHHHHHHHHhhcCCCcc
Confidence 136678999999999 9998 44443 3566778888899999999994
No 79
>KOG4426|consensus
Probab=98.92 E-value=9.3e-09 Score=90.06 Aligned_cols=149 Identities=23% Similarity=0.257 Sum_probs=105.9
Q ss_pred CCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHH----HHHHHH---hCCCCCh-hh
Q psy1869 37 GKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVE----FEIDKK---LGIKGPA-DV 108 (205)
Q Consensus 37 ~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~----~~a~~~---~g~~~~~-~~ 108 (205)
..++.+|-...||....+|+||.|+.|+||.++|.++..|++|+..--+-+.|++.. ...++- +...++- ++
T Consensus 186 ~~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~IgDL 265 (656)
T KOG4426|consen 186 SVKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIGDL 265 (656)
T ss_pred ceeeEEEecCCCcHHHHhhhhhhhhhhHhHHHHHHHHhcCcceEeeccccchHHHHHHHHHHHHHhCCchhccCCCchhH
Confidence 456788999999999999999999999999999999999999998866666666544 333321 1111110 00
Q ss_pred h---h------cCHHHHHHHH------------------HHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHH
Q psy1869 109 A---K------MGIAQYNLEC------------------RKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWW 161 (205)
Q Consensus 109 ~---~------~~~~~~~~~~------------------~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~ 161 (205)
. + ...++|.+.+ ..+|+--...+...+++|.+++.- --+..|...+.+
T Consensus 266 QvFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e-----~GESFYq~~m~~ 340 (656)
T KOG4426|consen 266 QVFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLKE-----RGESFYQDRMAE 340 (656)
T ss_pred HHHHHHHHhccCcCHHHHHHHHHHeeecccCCChHHHHHHHHHHhhHHHHHHHHHHhcchHhh-----cchhhhhhHHHH
Confidence 0 0 1234454332 235566667888888999854431 124468888999
Q ss_pred HHHHHHHCCCeeecCcc-ccccCCCCCccC
Q psy1869 162 VFSELWNKGLVYRGVKV-MPYSTACNTPLS 190 (205)
Q Consensus 162 ~~~~L~~kG~iy~~~~~-v~~~~~~~~~ls 190 (205)
+++.|..+|++.+.++. +-|-+.|+-+|.
T Consensus 341 vveel~~kglvee~~Gr~i~f~~g~~IPLt 370 (656)
T KOG4426|consen 341 VVEELKSKGLVEEDDGRRIMFPEGCDIPLT 370 (656)
T ss_pred HHHHHhcCCceeecCCceEeccCCCCcceE
Confidence 99999999999999876 778888887775
No 80
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=98.91 E-value=2.6e-09 Score=97.83 Aligned_cols=94 Identities=24% Similarity=0.268 Sum_probs=71.8
Q ss_pred eEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHH
Q psy1869 41 YSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLEC 120 (205)
Q Consensus 41 ~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~ 120 (205)
-+++-=||.|||.|||||++++++...+||-. .|.-++.+=-+|- .
T Consensus 52 ~v~tRFAPsPtGyLHIGharaAllN~l~Ar~~--gG~~iLRiEDTDp---~----------------------------- 97 (601)
T PTZ00402 52 KVVTRFPPEASGFLHIGHAKAALINSMLADKY--KGKLVFRFDDTNP---S----------------------------- 97 (601)
T ss_pred eeEEeeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEEcCCCC---c-----------------------------
Confidence 47788899999999999999999999999854 6766655522221 0
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCC-ceeccChhhHHHHHHHHHHHHHCCCee
Q psy1869 121 RKIVMRYSSEWEKVVKRIGRWIDFDN-DYKTLYPWYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 121 ~~~~~~~~~~~~~~l~~lg~~i~~d~-~~~T~~~~~~~~v~~~~~~L~~kG~iy 173 (205)
.-...+.+.|.++|++|| ++||. .+.+ +.+.....++..+|+++|++|
T Consensus 98 -R~~~e~~d~IleDL~WLG--l~wDe~~~~Q--Sdr~d~y~e~a~~Li~~G~AY 146 (601)
T PTZ00402 98 -KEKEHFEQAILDDLATLG--VSWDVGPTYS--SDYMDLMYEKAEELIKKGLAY 146 (601)
T ss_pred -ccCHHHHHHHHHHHHHCC--CCCCCceeec--cccHHHHHHHHHHHHHcCCEE
Confidence 011236789999999999 99986 3443 356788888899999999999
No 81
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=98.88 E-value=4.7e-09 Score=95.53 Aligned_cols=94 Identities=19% Similarity=0.150 Sum_probs=69.3
Q ss_pred EEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHH
Q psy1869 42 SFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECR 121 (205)
Q Consensus 42 ~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~ 121 (205)
+++-=+|.|||.|||||++++++...+||.. .|.-++.+=-+|- .
T Consensus 52 v~tRFaPsPtG~LHiGharaalln~~~Ar~~--gG~~iLRiEDTDp---~------------------------------ 96 (574)
T PTZ00437 52 PYFRFPPEPNGFLHIGHAKSMNLNFGSARAH--GGKCYLRYDDTNP---E------------------------------ 96 (574)
T ss_pred EEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEECCCCc---c------------------------------
Confidence 5777899999999999999999999999864 6665555522221 0
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeee
Q psy1869 122 KIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 122 ~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
.-...+.+.|.++|++|| ++||..+.+ + .|.....+...+|+++|.+|.
T Consensus 97 r~~~e~~~~I~~dL~wLG--i~~D~~~~q-S-~y~~~~ye~A~~Li~~G~AY~ 145 (574)
T PTZ00437 97 TEEQVYIDAIMEMVKWMG--WKPDWVTFS-S-DYFDQLHEFAVQLIKDGKAYV 145 (574)
T ss_pred ccChHHHHHHHHHHHHcC--CCCCCCCcC-c-hhHHHHHHHHHHHHHcCCEEE
Confidence 011236779999999999 999976543 3 444455567778999999994
No 82
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=98.88 E-value=5.1e-09 Score=94.94 Aligned_cols=93 Identities=23% Similarity=0.259 Sum_probs=66.3
Q ss_pred ecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHH
Q psy1869 44 YDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKI 123 (205)
Q Consensus 44 ~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~ 123 (205)
+-=||.|||.|||||||++++...+||-. .|.-++.+=-+|- ..-
T Consensus 3 tRFaPsPtG~LHiG~ar~al~n~~~A~~~--~G~~iLRieDTd~---------------------------------~r~ 47 (522)
T TIGR00440 3 TRFPPEPNGYLHIGHAKSICLNFGYAKYY--NGTCNLRFDDTNP---------------------------------VKE 47 (522)
T ss_pred EecCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEEcCCCc---------------------------------ccC
Confidence 44589999999999999999999999844 6666555522221 000
Q ss_pred HHHHHHHHHHHHHHhccccccCCc-eeccChhhHHHHHHHHHHHHHCCCeeec
Q psy1869 124 VMRYSSEWEKVVKRIGRWIDFDND-YKTLYPWYMESIWWVFSELWNKGLVYRG 175 (205)
Q Consensus 124 ~~~~~~~~~~~l~~lg~~i~~d~~-~~T~~~~~~~~v~~~~~~L~~kG~iy~~ 175 (205)
...+.+.|.++|++|| ++||.. +.+ | .+.....+...+|+++|.+|.-
T Consensus 48 ~~e~~~~I~~dL~wLG--~~~d~~~~~q-S-~~~~~~~~~a~~Li~~G~AY~c 96 (522)
T TIGR00440 48 DPEYVESIKRDVEWLG--FKWEGKIRYS-S-DYFDELYRYAEELIKKGLAYVD 96 (522)
T ss_pred ChHHHHHHHHHHHHcC--CCCCCCceEc-c-ccHHHHHHHHHHHHHcCCEEee
Confidence 1136789999999999 999643 333 2 3445555677899999999953
No 83
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=98.86 E-value=6.1e-09 Score=88.65 Aligned_cols=94 Identities=19% Similarity=0.165 Sum_probs=69.0
Q ss_pred EEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHH
Q psy1869 42 SFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECR 121 (205)
Q Consensus 42 ~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~ 121 (205)
+++-=+|.|||+|||||+|++++...+||-. .|.-++.+=-+|. + .+
T Consensus 6 v~~RFAPSPTG~LHlG~~rtAL~n~l~Ar~~--~G~~iLRiEDtD~-----------------~-------------R~- 52 (299)
T PRK05710 6 YIGRFAPSPSGPLHFGSLVAALGSWLDARAH--GGRWLLRIEDIDP-----------------P-------------RE- 52 (299)
T ss_pred eeEEeCcCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEECcCCC-----------------C-------------cc-
Confidence 4555679999999999999999999988865 5655555522221 0 00
Q ss_pred HHHHHHHHHHHHHHHHhccccccCC-ceeccChhhHHHHHHHHHHHHHCCCeee
Q psy1869 122 KIVMRYSSEWEKVVKRIGRWIDFDN-DYKTLYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 122 ~~~~~~~~~~~~~l~~lg~~i~~d~-~~~T~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
...+.+.|.++|++|| ++||. .+..+ .+.+...++.++|+++|.+|.
T Consensus 53 --~~~~~~~I~~dL~wlG--l~wDe~~~~QS--~r~~~Y~~~~~~L~~~G~aY~ 100 (299)
T PRK05710 53 --VPGAADAILADLEWLG--LHWDGPVLYQS--QRHDAYRAALDRLRAQGLVYP 100 (299)
T ss_pred --chHHHHHHHHHHHHCC--CCCCCCceEee--ccHHHHHHHHHHHHHCCCcee
Confidence 1125678999999999 99994 44432 456778888999999999993
No 84
>PLN02907 glutamate-tRNA ligase
Probab=98.86 E-value=6.8e-09 Score=97.82 Aligned_cols=96 Identities=21% Similarity=0.218 Sum_probs=73.8
Q ss_pred CeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHH
Q psy1869 40 RYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLE 119 (205)
Q Consensus 40 ~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~ 119 (205)
.-+++-=||.|||.|||||||++++...+||- ..|.-++.+=-+|- .
T Consensus 212 ~~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~--~~G~~iLR~eDTdp------------------~------------- 258 (722)
T PLN02907 212 GKVCTRFPPEPSGYLHIGHAKAALLNQYFARR--YKGKLIVRFDDTNP------------------S------------- 258 (722)
T ss_pred CceEEeeCCCCCCcccHHHHHHHHHHHHHHHH--hCCEEEEEecCCCC------------------C-------------
Confidence 34778889999999999999999999999994 46766655522221 0
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeee
Q psy1869 120 CRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
+-...+.+.|.++|++|| ++||..+.+ +.+.....+...+|+++|.+|.
T Consensus 259 --r~~~e~~~~I~~dl~wLG--~~~d~~~~q--S~r~~~y~~~a~~Li~~G~aY~ 307 (722)
T PLN02907 259 --KESDEFVENILKDIETLG--IKYDAVTYT--SDYFPQLMEMAEKLIKEGKAYV 307 (722)
T ss_pred --cCChHHHHHHHHHHHHcC--CCCCCcccc--cccHHHHHHHHHHHHHcCCeee
Confidence 001137789999999999 999977654 3456778888999999999995
No 85
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=98.85 E-value=6.2e-09 Score=92.61 Aligned_cols=88 Identities=17% Similarity=0.142 Sum_probs=68.3
Q ss_pred CCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHH
Q psy1869 47 PPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMR 126 (205)
Q Consensus 47 ~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (205)
.|.|||.|||||+|++++.-.+||-. .|.-++.+=-+|. . . ....
T Consensus 5 APSPTG~LHiG~artAL~n~l~Ar~~--gG~fiLRiEDTD~---------~---R---------------------~~~e 49 (433)
T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAKQQ--NEDFLIRIEDTDK---------E---R---------------------NIEG 49 (433)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEeCcCCC---------C---c---------------------CChH
Confidence 69999999999999999999999876 7777766633332 0 0 0112
Q ss_pred HHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy 173 (205)
+.+.|.++|++|| ++||..+..++ ..+.-.++.++|+++|.+|
T Consensus 50 ~~~~I~~~L~WlG--l~wDe~y~QSe--R~~~Y~~~a~~Li~~G~AY 92 (433)
T PRK12410 50 KDKEILEILNLFG--ISWDKLVYQSE--NLKFHRQMAEKLLSEKKAF 92 (433)
T ss_pred HHHHHHHHHHHcC--CCCCCCeehhc--cHHHHHHHHHHHHHcCCee
Confidence 5678999999999 99998776543 4567778889999999999
No 86
>PLN02859 glutamine-tRNA ligase
Probab=98.83 E-value=6.5e-09 Score=97.60 Aligned_cols=94 Identities=20% Similarity=0.153 Sum_probs=67.6
Q ss_pred EEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHH
Q psy1869 42 SFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECR 121 (205)
Q Consensus 42 ~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~ 121 (205)
+++-=||.|||.|||||++++++...+||.. .|.-++.+=-+|- .
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar~~--~G~~~LRieDTdp---~------------------------------ 309 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAKER--GGCCYLRFDDTNP---E------------------------------ 309 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEecCCCC---C------------------------------
Confidence 5677789999999999999999999999975 6665555422221 0
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeee
Q psy1869 122 KIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 122 ~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
.-...+.+.|.++|++|| ++|+..+.++ .++...-. ...+|+++|++|.
T Consensus 310 r~~~e~~~~I~edL~WLG--~~~d~~~~qS-d~f~~~Y~-~A~~Li~~G~AY~ 358 (788)
T PLN02859 310 AEKKEYIDHIEEIVEWMG--WEPFKITYTS-DYFQELYE-LAVELIRRGHAYV 358 (788)
T ss_pred ccchHHHHHHHHHHHHcC--CCCCCccccc-HhHHHHHH-HHHHHHHcCCeEe
Confidence 011236789999999999 9998766543 34434444 4566999999994
No 87
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=98.82 E-value=1e-08 Score=92.59 Aligned_cols=91 Identities=20% Similarity=0.200 Sum_probs=67.2
Q ss_pred ecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHH
Q psy1869 44 YDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKI 123 (205)
Q Consensus 44 ~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~ 123 (205)
+-=+|.|||.|||||+|++++...+||-. .|.-++.+=-+|. ...
T Consensus 4 ~RfAPsPtG~lHiG~~rtal~n~l~Ar~~--~G~~iLRieDtD~---------------------------------~R~ 48 (470)
T TIGR00464 4 TRFAPSPTGYLHIGGARTALFNYLFAKHT--GGEFILRIEDTDL---------------------------------ERN 48 (470)
T ss_pred EeeCCCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEeCcCCC---------------------------------ccC
Confidence 34479999999999999999999999944 7766666533331 000
Q ss_pred HHHHHHHHHHHHHHhccccccC-CceeccChhhHHHHHHHHHHHHHCCCee
Q psy1869 124 VMRYSSEWEKVVKRIGRWIDFD-NDYKTLYPWYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 124 ~~~~~~~~~~~l~~lg~~i~~d-~~~~T~~~~~~~~v~~~~~~L~~kG~iy 173 (205)
...+.+.|.++|++|| ++|| ..+..+ ...+...++..+|+++|++|
T Consensus 49 ~~~~~~~i~~~L~wlG--l~~de~~~~QS--~r~~~y~~~~~~L~~~g~aY 95 (470)
T TIGR00464 49 IEEAEEAILEGLKWLG--ISWDEGPYYQS--QRLDIYKKYAKELLEEGLAY 95 (470)
T ss_pred ChHHHHHHHHHHHHCC--CCCCCCeeehh--CCHHHHHHHHHHHHHcCCEE
Confidence 1125678999999999 9999 455543 33566677888999999999
No 88
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.81 E-value=1.2e-08 Score=92.24 Aligned_cols=93 Identities=18% Similarity=0.130 Sum_probs=69.1
Q ss_pred EecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHH
Q psy1869 43 FYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRK 122 (205)
Q Consensus 43 i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~ 122 (205)
.+-=.|.|||.|||||+|++++.-.+|| ...|.-++.+=-+|. ..
T Consensus 6 rtRFAPSPTG~lHiG~artAL~n~l~Ar--~~gG~fiLRIEDTD~---------------------------------~R 50 (513)
T PRK14895 6 ITRFAPSPTGFLHIGSARTALFNYLFAR--HHNGKFLLRIEDTDK---------------------------------ER 50 (513)
T ss_pred eEeeCCCCCCCccHHHHHHHHHHHHHHH--HcCCEEEEEECCCCc---------------------------------cc
Confidence 4455799999999999999999999999 447776666633331 00
Q ss_pred HHHHHHHHHHHHHHHhccccccC-CceeccChhhHHHHHHHHHHHHHCCCeee
Q psy1869 123 IVMRYSSEWEKVVKRIGRWIDFD-NDYKTLYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 123 ~~~~~~~~~~~~l~~lg~~i~~d-~~~~T~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
....+.+.|.++|++|| ++|| .+++.++ ..+...++.++|+++|.+|.
T Consensus 51 ~~~~~~~~i~~~L~WLG--l~wDe~py~QSe--R~~~Y~~~a~~Li~~G~AY~ 99 (513)
T PRK14895 51 STKEAVEAIFSGLKWLG--LDWNGEVIFQSK--RNNLYKEAALKLLQNGKAYY 99 (513)
T ss_pred cChHHHHHHHHHHHHcC--CCCCCCceeEeC--cHHHHHHHHHHHHHcCCeEE
Confidence 11236678999999999 9999 3454433 45677888899999999993
No 89
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=98.76 E-value=2e-08 Score=91.43 Aligned_cols=95 Identities=19% Similarity=0.145 Sum_probs=68.1
Q ss_pred eEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHH
Q psy1869 41 YSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLEC 120 (205)
Q Consensus 41 ~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~ 120 (205)
-+++-=+|.|||.|||||||++++...+||-. .|.-++.+=-+|- .-
T Consensus 29 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~--~G~~iLRieDTd~---~r---------------------------- 75 (554)
T PRK05347 29 RVHTRFPPEPNGYLHIGHAKSICLNFGLAQDY--GGKCNLRFDDTNP---EK---------------------------- 75 (554)
T ss_pred ceEEEeCCCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEECCCCC---Cc----------------------------
Confidence 47788899999999999999999999999854 6666555522221 00
Q ss_pred HHHHHHHHHHHHHHHHHhccccccC-CceeccChhhHHHHHHHHHHHHHCCCeee
Q psy1869 121 RKIVMRYSSEWEKVVKRIGRWIDFD-NDYKTLYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 121 ~~~~~~~~~~~~~~l~~lg~~i~~d-~~~~T~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
-...+.+.|.++|++|| ++|| ..+.+ | .+.....+...+|+++|++|.
T Consensus 76 --~~~e~~~~I~~dL~wLG--i~~d~~~~~q-S-~r~~~~y~~a~~Li~~G~AY~ 124 (554)
T PRK05347 76 --EDQEYVDSIKEDVRWLG--FDWSGELRYA-S-DYFDQLYEYAVELIKKGKAYV 124 (554)
T ss_pred --CChHHHHHHHHHHHHcC--CCCCCCceee-e-cCHHHHHHHHHHHHHcCCEee
Confidence 01236779999999999 9995 43443 2 334444455578999999994
No 90
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=98.75 E-value=2e-08 Score=82.48 Aligned_cols=88 Identities=24% Similarity=0.246 Sum_probs=65.5
Q ss_pred ecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHH
Q psy1869 44 YDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKI 123 (205)
Q Consensus 44 ~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~ 123 (205)
+-=+|.|||+||+||+|++++...+||-. .|.-++.+=-+|. + .++
T Consensus 4 ~RFAPsPtG~lHlG~~r~al~n~l~Ar~~--~G~~iLRieDtD~---~---------------------------R~~-- 49 (230)
T cd00418 4 TRFAPSPTGYLHIGHARTALFNFAFARKY--GGKFILRIEDTDP---E---------------------------RSR-- 49 (230)
T ss_pred EEeCCCCCCcccHHHHHHHHHHHHHHHHc--CCeEEEEeCcCCC---C---------------------------CCC--
Confidence 44579999999999999999999999875 6766666533332 0 011
Q ss_pred HHHHHHHHHHHHHHhccccccCC-ceeccChhhHHHHHHHHHHHHHCC
Q psy1869 124 VMRYSSEWEKVVKRIGRWIDFDN-DYKTLYPWYMESIWWVFSELWNKG 170 (205)
Q Consensus 124 ~~~~~~~~~~~l~~lg~~i~~d~-~~~T~~~~~~~~v~~~~~~L~~kG 170 (205)
..+.+.|.++|++|| ++||. .+.. ..+.+...+.+++|+++|
T Consensus 50 -~~~~~~I~~dL~wlG--l~wd~~~~~Q--S~r~~~y~~~~~~L~~~g 92 (230)
T cd00418 50 -PEYVESILEDLKWLG--LDWDEGPYRQ--SDRFDLYRAYAEELIKKG 92 (230)
T ss_pred -hHHHHHHHHHHHHcC--CCCCCCeeeh--hcCHHHHHHHHHHHHHcC
Confidence 126678999999999 99997 4443 255677778888999999
No 91
>PLN02627 glutamyl-tRNA synthetase
Probab=98.73 E-value=2.3e-08 Score=90.76 Aligned_cols=94 Identities=20% Similarity=0.158 Sum_probs=69.6
Q ss_pred EEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHH
Q psy1869 42 SFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECR 121 (205)
Q Consensus 42 ~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~ 121 (205)
+.+-=.|.|||.|||||+|++++...+||- ..|.-++.+=-+|. .
T Consensus 46 vr~RFAPSPTG~LHiG~aRtAL~n~l~Ar~--~gG~fiLRIEDTD~---------------------------------~ 90 (535)
T PLN02627 46 VRVRFAPSPTGNLHVGGARTALFNYLFARS--KGGKFVLRIEDTDL---------------------------------A 90 (535)
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHH--hCCEEEEEeCcCCC---------------------------------C
Confidence 455556899999999999999999999994 47777766633332 0
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCc---------eeccChhhHHHHHHHHHHHHHCCCeee
Q psy1869 122 KIVMRYSSEWEKVVKRIGRWIDFDND---------YKTLYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 122 ~~~~~~~~~~~~~l~~lg~~i~~d~~---------~~T~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
.....+.+.|.++|++|| ++||.. |+.+ ...+...++.++|+++|.+|.
T Consensus 91 R~~~e~~~~I~~~L~WLG--l~wDegp~~gg~~gpy~QS--eR~~~Y~~~a~~Li~~G~AY~ 148 (535)
T PLN02627 91 RSTKESEEAVLRDLKWLG--LDWDEGPDVGGEYGPYRQS--ERNAIYKQYAEKLLESGHVYP 148 (535)
T ss_pred CCChHHHHHHHHHHHHcC--CCCCcCcccCCCCCCeeee--ccHHHHHHHHHHHHHcCCeee
Confidence 001225678999999999 999952 3322 445777888889999999994
No 92
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=98.71 E-value=3.5e-08 Score=93.19 Aligned_cols=95 Identities=22% Similarity=0.255 Sum_probs=70.9
Q ss_pred eEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHH
Q psy1869 41 YSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLEC 120 (205)
Q Consensus 41 ~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~ 120 (205)
-+++-=||.|||.|||||+|++++...+||-. .|.-++.+ |+....-
T Consensus 31 ~v~tRFaPsPtG~lHiGhar~alln~~~A~~~--~G~~~LR~---eDTd~~r---------------------------- 77 (771)
T PRK14703 31 RVVTRFPPEPNGYLHIGHAKSILLNFGIARDY--GGRCHLRM---DDTNPET---------------------------- 77 (771)
T ss_pred ceEEEeCcCCCCcccHHHHHHHHHHHHHHHHh--CCEEEEEe---CCCCCCc----------------------------
Confidence 37788899999999999999999999999854 66555554 3311100
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCc-eeccChhhHHHHHHHHHHHHHCCCeee
Q psy1869 121 RKIVMRYSSEWEKVVKRIGRWIDFDND-YKTLYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 121 ~~~~~~~~~~~~~~l~~lg~~i~~d~~-~~T~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
-...+.+.|.++|++|| ++||.. +.+ +.+.....+...+|+++|++|.
T Consensus 78 --~~~e~~~~I~~dl~wLG--~~wd~~~~~q--S~~~~~y~~~a~~Li~~G~aY~ 126 (771)
T PRK14703 78 --EDTEYVEAIKDDVRWLG--FDWGEHLYYA--SDYFERMYAYAEQLIKMGLAYV 126 (771)
T ss_pred --CChHHHHHHHHHHHHcC--CCCCCCceEe--ecCHHHHHHHHHHHHHcCCccc
Confidence 01136789999999999 999853 333 2567777788889999999994
No 93
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=98.70 E-value=3.4e-08 Score=89.30 Aligned_cols=94 Identities=18% Similarity=0.154 Sum_probs=69.7
Q ss_pred EEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHH
Q psy1869 42 SFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECR 121 (205)
Q Consensus 42 ~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~ 121 (205)
+.+-=+|.|||.|||||+|++++.-.+||-. .|.-++.+=-+|. .
T Consensus 5 v~~RfAPSPtG~lHiG~~rtal~n~l~Ar~~--~G~fiLRieDtD~---------------------------------~ 49 (476)
T PRK01406 5 VRTRFAPSPTGYLHIGGARTALFNWLFARHH--GGKFILRIEDTDQ---------------------------------E 49 (476)
T ss_pred eeEEeCCCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEeCcCCC---------------------------------C
Confidence 3455679999999999999999999999875 6666665533331 0
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCc--------eeccChhhHHHHHHHHHHHHHCCCeee
Q psy1869 122 KIVMRYSSEWEKVVKRIGRWIDFDND--------YKTLYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 122 ~~~~~~~~~~~~~l~~lg~~i~~d~~--------~~T~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
.....+.+.|.++|++|| ++||.. +..+ ...+...++.++|+++|++|.
T Consensus 50 R~~~~~~~~i~~~L~wlG--l~~De~p~~~~~gpy~QS--~r~~~y~~~~~~L~~~g~aY~ 106 (476)
T PRK01406 50 RSTEEAEEAILEGLKWLG--LDWDEGPDGGPYGPYRQS--ERLDIYKEYAEQLLEEGKAYY 106 (476)
T ss_pred CCChHHHHHHHHHHHHCC--CCCCCCCccCCCCceehh--cCHHHHHHHHHHHHHcCCeee
Confidence 011225678999999999 999954 4433 345677888889999999995
No 94
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.68 E-value=8.4e-08 Score=79.32 Aligned_cols=88 Identities=19% Similarity=0.222 Sum_probs=62.6
Q ss_pred ecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHH
Q psy1869 44 YDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKI 123 (205)
Q Consensus 44 ~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~ 123 (205)
+-=+|.|||.|||||++++++...+||- ..|.-++.+ +|... . . ++
T Consensus 4 ~RfAPsPtG~LHlG~~~~al~n~l~ar~--~~G~~ilRi---eDtd~------~---r------------------~~-- 49 (239)
T cd00808 4 TRFAPSPTGFLHIGGARTALFNYLFARK--HGGKFILRI---EDTDQ------E---R------------------SV-- 49 (239)
T ss_pred EEeCCCCCCcccHHHHHHHHHHHHHHHH--cCCeEEEEE---CcCCC------C---C------------------Cc--
Confidence 4457999999999999999999999985 356444434 43111 0 0 11
Q ss_pred HHHHHHHHHHHHHHhccccccCC---------ceeccChhhHHHHHHHHHHHHHCC
Q psy1869 124 VMRYSSEWEKVVKRIGRWIDFDN---------DYKTLYPWYMESIWWVFSELWNKG 170 (205)
Q Consensus 124 ~~~~~~~~~~~l~~lg~~i~~d~---------~~~T~~~~~~~~v~~~~~~L~~kG 170 (205)
..+.+.|.++|.+|| ++||. .+..+ ...+...++.++|.++|
T Consensus 50 -~~~~~~i~~dL~wlG--l~~d~~~~~~g~~~~~~QS--~r~~~y~~~~~~L~~~g 100 (239)
T cd00808 50 -PEAEEAILEALKWLG--LDWDEGPDVGGPYGPYRQS--ERLEIYRKYAEKLLEKG 100 (239)
T ss_pred -hHHHHHHHHHHHHcC--CCCCcCCccCCCCCCEeee--CCHHHHHHHHHHHHHcC
Confidence 125678999999999 99997 55543 35666777788898888
No 95
>KOG1195|consensus
Probab=98.66 E-value=3.1e-07 Score=81.85 Aligned_cols=166 Identities=12% Similarity=0.023 Sum_probs=115.0
Q ss_pred HHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHH
Q psy1869 14 EEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVE 93 (205)
Q Consensus 14 ~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~ 93 (205)
++.-++..|+....|-... .-..++.+|.-..||.+.+.|+||.|+.++|-.++...+..|++|+.+-+.-+.|.++.
T Consensus 87 ~k~~l~~i~~~~~~~g~~~--~~~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vtr~NYLGDWGkQFg 164 (567)
T KOG1195|consen 87 IKSVLPIIEEQREKYGKNE--LGSGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVTRVNYLGDWGKQFG 164 (567)
T ss_pred HHHHHHHHHHHhcccCccc--cccCceEEEEecCCCcccccccchhhhhhhhhHhhhhHHhhCCceeehhhhhHHHHHhh
Confidence 4555666677666665442 22367899999999999999999999999999999999999999998876666666655
Q ss_pred HHHHH--HhCCC-------------------C----ChhhhhcCHHHHH----------HHHHHHHHHHHHHHHHHHHHh
Q psy1869 94 FEIDK--KLGIK-------------------G----PADVAKMGIAQYN----------LECRKIVMRYSSEWEKVVKRI 138 (205)
Q Consensus 94 ~~a~~--~~g~~-------------------~----~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~l 138 (205)
..+.. .+|.+ . ..+..+..++-|. +.=+++-+.-++...+.+.+|
T Consensus 165 ll~~g~~~~g~e~~L~~~pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl 244 (567)
T KOG1195|consen 165 LLALGFQLYGDEEELQLNPIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRL 244 (567)
T ss_pred HHhccHHhhCchhhhccchHHHHHHHHHHhhhhhhhCcchHHHHHHHHHHHhcccHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 44321 11210 0 0011111222222 111223333456777888999
Q ss_pred ccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCC
Q psy1869 139 GRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTA 184 (205)
Q Consensus 139 g~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~ 184 (205)
| |.||.+-.+ +..+.+.++.+...+...|++.+.+|....+-.
T Consensus 245 ~--v~FD~y~gE-Sqv~~e~~~~~~d~~rs~~l~~e~dG~~vidL~ 287 (567)
T KOG1195|consen 245 N--VKFDEYSGE-SQVSNEKMQEALDLLRSANLTEEIDGTIVIDLS 287 (567)
T ss_pred c--eeeeeccch-HHHHHHHHHHHHHHHHhcCCcccCCCcEEEEec
Confidence 9 999998776 447889999999999999988888888777655
No 96
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=1.9e-06 Score=77.38 Aligned_cols=141 Identities=19% Similarity=0.224 Sum_probs=94.2
Q ss_pred CeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCC--------HHHHHHHHHHhCCCCChhhhhc
Q psy1869 40 RYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHG--------LPVEFEIDKKLGIKGPADVAKM 111 (205)
Q Consensus 40 ~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G--------~~i~~~a~~~~g~~~~~~~~~~ 111 (205)
.-+++.+.-+|+|.+|||++|-.+.+|+++|-++.+|+.|.+++=+|+.+ +|-....++.+|+.- ..+
T Consensus 19 ~~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Pl-t~I--- 94 (521)
T COG1384 19 DEYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPL-TEI--- 94 (521)
T ss_pred CcEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCcc-ccC---
Confidence 56777888999999999999999999999999999999999999999865 222355666667620 000
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccCh----hhHHHHH----------HHHHHHHHCCCeeecCc
Q psy1869 112 GIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYP----WYMESIW----------WVFSELWNKGLVYRGVK 177 (205)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~----~~~~~v~----------~~~~~L~~kG~iy~~~~ 177 (205)
+.-| -.|..+++++...+.+.|..+| |+...... ++. .|.+.+. +++.+-..+ -.+.+.
T Consensus 95 -PdP~-G~~~Sya~hf~~~f~~~l~~~G--i~~E~~s~-se~Yk~G~~~~~i~~ale~rdeI~~il~~~~~~--~~~e~~ 167 (521)
T COG1384 95 -PDPF-GCCDSYAEHFLRPFEEFLDEFG--IEVEFVSA-TELYKSGLYDEAIRIALERRDEIMEILNEYRGR--ELEEDW 167 (521)
T ss_pred -CCCc-cccchHHHHHHHHHHHHHHhcC--CceEEEEh-HHhhhcccHHHHHHHHHhhHHHHHHHHHHhcCC--cccCCc
Confidence 0001 1467899999999999999999 65543322 222 2333333 333332222 122222
Q ss_pred --cccccCCCCCccCc
Q psy1869 178 --VMPYSTACNTPLSN 191 (205)
Q Consensus 178 --~v~~~~~~~~~ls~ 191 (205)
..+.|++|++.++-
T Consensus 168 ~P~~piC~kcGri~~t 183 (521)
T COG1384 168 SPFMPICEKCGRILTT 183 (521)
T ss_pred eeccccccccCCccee
Confidence 26789999986653
No 97
>KOG1147|consensus
Probab=98.06 E-value=1.8e-05 Score=71.30 Aligned_cols=99 Identities=21% Similarity=0.220 Sum_probs=68.5
Q ss_pred eEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHH
Q psy1869 41 YSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLEC 120 (205)
Q Consensus 41 ~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~ 120 (205)
-+++-=||-|+|.||||||..+++ ..|+..+ |+-..++-+|+.- |
T Consensus 200 kVv~RFPPEpSGyLHIGHAKAALL----NqYfa~~-~~G~LIvRFDDTN---------------P--------------- 244 (712)
T KOG1147|consen 200 KVVTRFPPEPSGYLHIGHAKAALL----NQYFAQA-YQGKLIVRFDDTN---------------P--------------- 244 (712)
T ss_pred ceEEecCCCCCceeehhhHHHHHH----HHHHHHh-cCceEEEEecCCC---------------c---------------
Confidence 456677899999999999988765 4444322 2223344445411 1
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCcc
Q psy1869 121 RKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKV 178 (205)
Q Consensus 121 ~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~ 178 (205)
.+-.++|.+.|.++|..|| |..|.+..| ..|-..+.....+|+..|.+|-.+.+
T Consensus 245 aKE~~eFe~~IleDl~~Lg--Ikpd~~TyT--SDyF~~i~dycv~likeGKAYvDDTp 298 (712)
T KOG1147|consen 245 AKENEEFEDVILEDLSLLG--IKPDRVTYT--SDYFDEIMDYCVKLIKEGKAYVDDTP 298 (712)
T ss_pred chhhHHHHHHHHHHHHHhC--cCcceeeec--hhhHHHHHHHHHHHHhcCcccccCCc
Confidence 1112347789999999999 988877554 45677778888899999999987755
No 98
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=98.06 E-value=4.7e-07 Score=78.62 Aligned_cols=142 Identities=18% Similarity=0.264 Sum_probs=80.2
Q ss_pred CCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCC--------HHHHHHHHHHhCCCCChhhh
Q psy1869 38 KPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHG--------LPVEFEIDKKLGIKGPADVA 109 (205)
Q Consensus 38 ~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G--------~~i~~~a~~~~g~~~~~~~~ 109 (205)
.+..+++.+.-.|+|.+|||++|..+.+|+++|-++.+|.+|.+++.+|+.+ .|-. ..++.+|.. +.
T Consensus 21 ~~~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~-~~~~ylg~P----lt 95 (360)
T PF01921_consen 21 GKEPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNP-ELEKYLGKP----LT 95 (360)
T ss_dssp --SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC--CCCCTTSB----TT
T ss_pred CCccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChH-HHHHhcCCc----cc
Confidence 3457888888999999999999999999999999999999999999999965 1111 222333321 00
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceecc---ChhhH----------HHHHHHHHHHHHCCCeeecC
Q psy1869 110 KMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTL---YPWYM----------ESIWWVFSELWNKGLVYRGV 176 (205)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~---~~~~~----------~~v~~~~~~L~~kG~iy~~~ 176 (205)
.. ++-|- .+..++++|...+.+.|..|| |++.....|. +-.|. ..+.+++.+..... ...+
T Consensus 96 ~V-PdP~G-~~~SyaeH~~~~~~~~L~~~g--ie~e~~s~te~Y~sG~y~~~i~~aL~~~~~I~~Il~~~~~~~--~~~~ 169 (360)
T PF01921_consen 96 RV-PDPFG-CHESYAEHFNAPFEEFLDEFG--IEYEFISQTEMYRSGRYDEQIRTALENRDEIREILNEYRGRE--RPET 169 (360)
T ss_dssp TS-B-TTS-SSSCHHHHHHHHHHHHHHTTT-----EEEECCCCCCTTTTHHHHCHHHHTHHHHHHHHHHHHHHT----TT
T ss_pred cC-CCCCC-CCccHHHHHHHHHHHHHHHcC--CceEEEeHHHhhhCCchHHHHHHHHHhHHHHHHHHHHhcCcC--CCCC
Confidence 00 11111 245688999999999999999 6654333331 12233 33444444443332 2222
Q ss_pred c--cccccCCCCCccC
Q psy1869 177 K--VMPYSTACNTPLS 190 (205)
Q Consensus 177 ~--~v~~~~~~~~~ls 190 (205)
. ..++|++|++.++
T Consensus 170 y~Pf~piC~~cGri~t 185 (360)
T PF01921_consen 170 YSPFLPICEKCGRIDT 185 (360)
T ss_dssp --SEEEEETTTEE--E
T ss_pred eeeeeeeccccCCccc
Confidence 2 2678999998654
No 99
>KOG1148|consensus
Probab=97.99 E-value=1.9e-05 Score=71.88 Aligned_cols=95 Identities=24% Similarity=0.294 Sum_probs=59.3
Q ss_pred eEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHH
Q psy1869 41 YSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLEC 120 (205)
Q Consensus 41 ~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~ 120 (205)
-+++-=||-|||.||||||-..-+-==+|+++ .|..-+. +|+ +.|
T Consensus 248 kV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~--~G~cyLR---fDD---------------TNP--------------- 292 (764)
T KOG1148|consen 248 KVVTRFPPEPNGILHIGHAKAINVNFGYAKAH--GGVCYLR---FDD---------------TNP--------------- 292 (764)
T ss_pred eeEEeCCCCCCceeeecchhheeechhhhhhh--CCeEEEe---cCC---------------CCc---------------
Confidence 46778899999999999996543322233333 2322211 122 111
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeee
Q psy1869 121 RKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 121 ~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
.+-..+|.+.|.+..++|| |..+-.|.++.|-...-+.-.+|+++|++|.
T Consensus 293 EkEee~yf~sI~e~V~WLG----~~P~kvTysSDyFdqLy~~av~LIrkG~AYV 342 (764)
T KOG1148|consen 293 EKEEEEYFESIKEMVAWLG----FEPYKVTYSSDYFDQLYELAVELIRKGKAYV 342 (764)
T ss_pred chhhHHHHHHHHHHHHHhC----CCceeeecchhHHHHHHHHHHHHHhcCceeE
Confidence 1112347788999999999 6777788765555554444556999999994
No 100
>KOG1149|consensus
Probab=97.05 E-value=0.0017 Score=57.55 Aligned_cols=112 Identities=21% Similarity=0.228 Sum_probs=72.2
Q ss_pred CCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHH
Q psy1869 47 PPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMR 126 (205)
Q Consensus 47 ~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (205)
-|.|||.||||-+|++..-=.+||-. .|.-++.+=.+|- ... +.-
T Consensus 39 APSPTGfLHlGgLRTALfNYLfArk~--gGkFiLRiEDTDq-----~R~----------------------------v~g 83 (524)
T KOG1149|consen 39 APSPTGFLHLGGLRTALFNYLFARKK--GGKFILRIEDTDQ-----KRL----------------------------IRG 83 (524)
T ss_pred cCCCCcceehhhHHHHHHHHHHHHhc--CCeEEEEeccccc-----ccc----------------------------ccc
Confidence 58999999999999987766666643 6666666544442 000 000
Q ss_pred HHHHHHHHHHHhccccccCCce------ecc-ChhhHHHHHHHHHHHHHCCCeeec----------------Ccccc-cc
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDY------KTL-YPWYMESIWWVFSELWNKGLVYRG----------------VKVMP-YS 182 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~------~T~-~~~~~~~v~~~~~~L~~kG~iy~~----------------~~~v~-~~ 182 (205)
--++|.++|.++| ++||.-= ... -....+.-.+..++|++.|.+|+- ...++ |+
T Consensus 84 s~e~i~~~L~w~n--l~~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~lrk~A~k~~~~p~YD 161 (524)
T KOG1149|consen 84 SEEAIYEDLKWAN--LDWDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLLRKSALKKHEIPRYD 161 (524)
T ss_pred hHHHHHHHHHhcC--CCcccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHHHHhhhccCCCCccc
Confidence 1247788999999 9988632 111 113455567778889999999952 23344 66
Q ss_pred CCCCCccCcccccc
Q psy1869 183 TACNTPLSNFESGQ 196 (205)
Q Consensus 183 ~~~~~~ls~~ev~~ 196 (205)
.+|. -+|++||.+
T Consensus 162 ~kca-~ls~~ei~~ 174 (524)
T KOG1149|consen 162 RKCA-NLSDAEIKQ 174 (524)
T ss_pred chhc-ccCHHHHHH
Confidence 6664 477788864
No 101
>PLN02486 aminoacyl-tRNA ligase
Probab=94.10 E-value=0.45 Score=42.23 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=26.6
Q ss_pred CCCCCeEEecCCCCCCCc-CchhHHhHhHHHHHHHHHHH-HCCCccccc
Q psy1869 36 KGKPRYSFYDGPPFATGL-PHYGHILAGAIKDVVTRYAH-QNGFHVERR 82 (205)
Q Consensus 36 ~~~~~~~i~~~~P~p~G~-LHiGH~r~~i~~DilaR~~r-~~G~~V~~~ 82 (205)
.++++|.+++|. -|||+ |||||. +....+. ++. +.|..+.+.
T Consensus 69 e~~~~~~vYtG~-~PSg~~lHlGHl---v~~~~~~-~lQ~~~~~~~~I~ 112 (383)
T PLN02486 69 EKGEKFYLYTGR-GPSSEALHLGHL---IPFMFTK-YLQDAFKVPLVIQ 112 (383)
T ss_pred hcCCCeEEEeCC-CCCCccccHHHH---HHHHHHH-HHHHhCCCeEEEE
Confidence 456678877765 67784 999995 3344444 555 446555554
No 102
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=94.06 E-value=0.13 Score=43.69 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=23.7
Q ss_pred CCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 48 PFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 48 P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
--|||.|||||..+++. ..+.++..|+++.+..+
T Consensus 6 ~~PTG~lHLG~~~~al~---~~~~lQ~ag~~~~~~Ia 39 (280)
T cd00806 6 IQPSGSLHLGHYLGAFR---FWVWLQEAGYELFFFIA 39 (280)
T ss_pred eCCCchhhHHHHHHHHH---HHHHHHhCCCCEEEEec
Confidence 35889999999887544 23334445998877755
No 103
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=93.12 E-value=0.39 Score=42.39 Aligned_cols=43 Identities=21% Similarity=0.318 Sum_probs=28.1
Q ss_pred CCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 37 GKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 37 ~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
+++++.+++|. -|||.|||||.. ...-++++.. .|+.|.+..+
T Consensus 63 ~~~~~~iytG~-~PSG~lHLGh~~---~~~~~~~lQ~-~g~~~~i~Ia 105 (368)
T PRK12285 63 NGKPFAVYTGF-MPSGPMHIGHKM---VFDELKWHQE-FGANVYIPIA 105 (368)
T ss_pred cCCCeEEEEcc-CCCCCccHHHHH---HHHHHHHHHh-cCCCEEEEec
Confidence 45567776665 456999999964 2334444444 7888877655
No 104
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=90.93 E-value=1.1 Score=40.27 Aligned_cols=34 Identities=21% Similarity=0.195 Sum_probs=22.9
Q ss_pred CCCCCcCchhHHhHhHHHHHHHHHHHHCCCcccccc
Q psy1869 48 PFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRF 83 (205)
Q Consensus 48 P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~ 83 (205)
--|||.|||||..+++-. ..+.....|+++.+..
T Consensus 9 iqPTG~lHLGNylGaik~--~v~lq~q~~~~~~~~I 42 (431)
T PRK12284 9 ITTTGTPHLGNYAGAIRP--AIAASRQPGVESFYFL 42 (431)
T ss_pred ecCCCcchHHHHHHHHHH--HHHHHHhCCCcEEEEe
Confidence 358999999998776542 3344444688876553
No 105
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=90.34 E-value=0.22 Score=41.97 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=23.6
Q ss_pred CCCC-cCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 49 FATG-LPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 49 ~p~G-~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
-||| .|||||.... -.+.++.++ |++|.+..|
T Consensus 8 ~PTg~~lHLG~~~~~---~~~~~lq~~-g~~~~ilI~ 40 (269)
T cd00805 8 DPTAPSLHLGHLVPL---MKLRDFQQA-GHEVIVLIG 40 (269)
T ss_pred CCCCCcccHHHHHHH---HHHHHHHHC-CCeEEEEEC
Confidence 5889 8999997753 356666664 999887755
No 106
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=88.89 E-value=0.044 Score=41.95 Aligned_cols=111 Identities=11% Similarity=0.011 Sum_probs=55.1
Q ss_pred HHHHHHHCCCccccccccCCCCHHHHHHHHHH--hCCCCChhhhhcCHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Q psy1869 68 VTRYAHQNGFHVERRFGWDCHGLPVEFEIDKK--LGIKGPADVAKMGIAQYNLECRK-------IVMRYSSEWEKVVKRI 138 (205)
Q Consensus 68 laR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~--~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~l 138 (205)
|||+||+.|++|.+..+.+ +..+...|.++ .-++.+.. |.+.... -.....+.+.+.++.+
T Consensus 12 Lar~LR~lG~Dt~~~~~~~--D~~il~~A~~e~RillTrd~~--------l~~~~~~~~~~~li~~~~~~~QL~ev~~~~ 81 (147)
T PF01927_consen 12 LARWLRLLGYDTLYSRDID--DDEILELAREEGRILLTRDRD--------LLKRRRVSGGVILIRSDDPEEQLREVLERF 81 (147)
T ss_pred HHHHHHHCCCcEEEeCCCC--hHHHHHHhhhCCeEEEECCHH--------HHHHhhccCCEEEEcCCCHHHHHHHHHHHc
Confidence 7999999999999887653 44455555432 11111111 1111110 0112334566667788
Q ss_pred ccccccCCceeccC---hhhHHHHHHHHHHHHHCCCeeecCccccccCCCCCcc
Q psy1869 139 GRWIDFDNDYKTLY---PWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPL 189 (205)
Q Consensus 139 g~~i~~d~~~~T~~---~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~~~~l 189 (205)
|+....+..++-.. ......-.+.+....-. .+++.....|.|+.|++..
T Consensus 82 ~l~~~~~~~~sRC~~CN~~L~~v~~~~v~~~vp~-~v~~~~~~f~~C~~C~kiy 134 (147)
T PF01927_consen 82 GLKLRLDPIFSRCPKCNGPLRPVSKEEVKDRVPP-YVYETYDEFWRCPGCGKIY 134 (147)
T ss_pred CCccccCCCCCccCCCCcEeeechhhccccccCc-cccccCCeEEECCCCCCEe
Confidence 84443344333221 11111112222212222 3666667799999998753
No 107
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=87.91 E-value=0.49 Score=39.97 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=22.4
Q ss_pred CCCC-cCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 49 FATG-LPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 49 ~p~G-~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
-||| .|||||..+ -..+.++ ...|+++.++.|
T Consensus 7 ~PTg~~lHlGh~~~---l~~~~~l-q~~g~~~~~~I~ 39 (273)
T cd00395 7 DPTADSLHIGHLIG---LLTFRRF-QHAGHRPIFLIG 39 (273)
T ss_pred cCCCCCccHHHHHH---HHHHHHH-HHCCCCEEEEEe
Confidence 5889 699999766 3334444 447999887765
No 108
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=87.90 E-value=0.44 Score=40.42 Aligned_cols=41 Identities=24% Similarity=0.324 Sum_probs=25.6
Q ss_pred CCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 39 PRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 39 ~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
+++.++.|. -|||.|||||.-.. ..+.++.+ .|++|.+..|
T Consensus 4 ~~~~~y~G~-~PTg~lHlG~l~~~---~~~~~lq~-~g~~~~i~ia 44 (292)
T PF00579_consen 4 KPFRVYTGI-DPTGDLHLGHLVPI---MKLIWLQK-AGFKVIILIA 44 (292)
T ss_dssp SSEEEEEEE-ESSSS-BHHHHHHH---HHHHHHHH-TTSEEEEEEE
T ss_pred CCcEEEEeE-CCCCcccchHHHHH---HHHHHHHh-cCCccceEec
Confidence 445555554 57789999987543 33344443 8999987764
No 109
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=87.29 E-value=0.72 Score=41.30 Aligned_cols=43 Identities=19% Similarity=0.175 Sum_probs=28.8
Q ss_pred CCCCeEEecCCCCCCCc-CchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 37 GKPRYSFYDGPPFATGL-PHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 37 ~~~~~~i~~~~P~p~G~-LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
.++++.++.|. -|||+ |||||+-. .- ..|++...|++|+++.|
T Consensus 30 ~~~~~~iy~G~-dPT~~sLHlGhlv~---l~-~l~~lq~~G~~~~~lig 73 (410)
T PRK13354 30 EGKPLTLYLGF-DPTAPSLHIGHLVP---LM-KLKRFQDAGHRPVILIG 73 (410)
T ss_pred cCCCcEEEEcc-cCCCCCcchhhHHH---HH-HHHHHHHcCCeEEEEEc
Confidence 34566666665 57784 99999533 22 34555668999988765
No 110
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=86.85 E-value=0.59 Score=41.39 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=26.6
Q ss_pred CeEEecCCCCCCC-cCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 40 RYSFYDGPPFATG-LPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 40 ~~~i~~~~P~p~G-~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
++.++.|+ -||| .|||||... .-.+ |.+...|++|+++.|
T Consensus 30 ~~~vy~G~-dPTg~~lHlGh~v~---l~~l-~~lq~~G~~~~ilig 70 (377)
T TIGR00234 30 KIKLYVGF-DPTAPSLHLGHLVP---LLKL-RDFQQAGHEVIVLLG 70 (377)
T ss_pred CCEEEEee-CCCCCCccHHHHHH---HHHH-HHHHHCCCcEEEEEe
Confidence 45555554 5789 899999754 2334 444557999987764
No 111
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=86.25 E-value=0.82 Score=39.67 Aligned_cols=41 Identities=22% Similarity=0.295 Sum_probs=25.4
Q ss_pred CCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 39 PRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 39 ~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
+++.++. +--|||.|||||... .--++++.+ .|++|.+..+
T Consensus 29 ~~~~v~~-G~~PTG~lHLG~~~~---~~~~~~lq~-~g~~~~i~Ia 69 (329)
T PRK08560 29 EEPKAYI-GFEPSGKIHLGHLLT---MNKLADLQK-AGFKVTVLLA 69 (329)
T ss_pred CCCEEEE-ccCCCCcchhhhhHH---HHHHHHHHH-CCCeEEEEEc
Confidence 4555553 446779999999542 223555554 5888766643
No 112
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=85.90 E-value=1.2 Score=39.69 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=27.5
Q ss_pred CeEEecCCCCCCC-cCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 40 RYSFYDGPPFATG-LPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 40 ~~~i~~~~P~p~G-~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
++.++.|+ -||| .|||||.-. .-.+ |-+...|++|+++.|
T Consensus 32 ~~~~Y~Gf-DPTa~slHlGhlv~---l~kL-~~fQ~aGh~~ivLig 72 (401)
T COG0162 32 PLRVYIGF-DPTAPSLHLGHLVP---LMKL-RRFQDAGHKPIVLIG 72 (401)
T ss_pred CceEEEee-CCCCCccchhhHHH---HHHH-HHHHHCCCeEEEEec
Confidence 55555555 4678 799999743 3334 445568999998876
No 113
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=84.67 E-value=0.63 Score=41.29 Aligned_cols=41 Identities=20% Similarity=0.088 Sum_probs=24.1
Q ss_pred CCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCcccccc
Q psy1869 39 PRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRF 83 (205)
Q Consensus 39 ~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~ 83 (205)
+++.++.|. -|||.||||| +++..--+.. +...|++|.+..
T Consensus 65 ~~~~v~~G~-~PTG~lHLG~--g~i~~~~~~~-lq~~G~~v~~~I 105 (383)
T PTZ00126 65 ERPICYDGF-EPSGRMHIAQ--GILKAINVNK-LTKAGCVFVFWV 105 (383)
T ss_pred CCCEEEEEE-CCCCcccccc--hHhHhHHHHH-HHhCCCeEEEEE
Confidence 444454443 5789999999 2222223333 355699887664
No 114
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=84.25 E-value=0.77 Score=39.94 Aligned_cols=33 Identities=15% Similarity=0.080 Sum_probs=21.6
Q ss_pred CCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 48 PFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 48 P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
--|||.|||||..+.+- -+.++.. +++|.+..+
T Consensus 8 ~~PTG~lHLG~~~g~~~--~~~~lQ~--~~~~~~~Ia 40 (333)
T PRK00927 8 IQPTGKLHLGNYLGAIK--NWVELQD--EYECFFCIA 40 (333)
T ss_pred eCCCccchHHhHHHHHH--HHHHHHh--cCCeEEEEe
Confidence 35889999999887653 2444444 367765543
No 115
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=83.79 E-value=1 Score=40.34 Aligned_cols=41 Identities=22% Similarity=0.200 Sum_probs=27.3
Q ss_pred CCeEEecCCCCCCCc-CchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 39 PRYSFYDGPPFATGL-PHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 39 ~~~~i~~~~P~p~G~-LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
+++.++.|. -|||+ |||||... ... .|.+...|++|+++.|
T Consensus 32 ~~~~vy~G~-dPTg~slHlGhlv~---l~~-l~~lQ~~G~~~~~lig 73 (408)
T PRK05912 32 EPLRIYLGF-DPTAPSLHLGHLVP---LLK-LRRFQDAGHKPIALIG 73 (408)
T ss_pred CCCEEEEee-cCCCCCccHHhHHH---HHH-HHHHHHCCCcEEEEEc
Confidence 456666554 57785 99999763 333 4444557999887764
No 116
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=82.83 E-value=0.94 Score=39.32 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=22.6
Q ss_pred CCCCCcCchhHHhHhHHHHHHHHHHHHCCCcccccc
Q psy1869 48 PFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRF 83 (205)
Q Consensus 48 P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~ 83 (205)
--|||.|||||..+++. .+++...|++|.+..
T Consensus 9 ~~PTG~~HlG~~l~~~~----~~~~~q~~~~~~i~I 40 (328)
T TIGR00233 9 IQPSGKMHLGHYLGAIQ----TKWLQQFGVELFICI 40 (328)
T ss_pred eCCCcHhHHHHHHHHHH----HHHHHhCCCCEEEEe
Confidence 36789999999766544 444446798887554
No 117
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=81.06 E-value=1.5 Score=38.20 Aligned_cols=33 Identities=18% Similarity=0.141 Sum_probs=20.5
Q ss_pred CCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccc
Q psy1869 48 PFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERR 82 (205)
Q Consensus 48 P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~ 82 (205)
--|||.|||||..+++-. ..++....|.++.+.
T Consensus 10 iqPTG~~HLGnylga~k~--~~~lq~~~~~~~~~~ 42 (332)
T PRK12556 10 IKPTGYPHLGNYIGAIKP--ALQMAKNYEGKALYF 42 (332)
T ss_pred ECCCCcchHHHHHHHHHH--HHHHHHhcCCeEEEE
Confidence 357799999998775442 233444456555443
No 118
>PLN02886 aminoacyl-tRNA ligase
Probab=80.93 E-value=1.2 Score=39.63 Aligned_cols=31 Identities=16% Similarity=0.088 Sum_probs=20.5
Q ss_pred CCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccc
Q psy1869 48 PFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERR 82 (205)
Q Consensus 48 P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~ 82 (205)
--|||.+||||..+++ .-++.+.. |+++.+.
T Consensus 53 iqPSG~lHLGnylGai--~~~v~lQ~--~~~~~~~ 83 (389)
T PLN02886 53 VQPTGSIHLGNYLGAI--KNWVALQE--TYDTFFC 83 (389)
T ss_pred ECCCCccHHHHHHHHH--HHHHHHhc--cCCEEEE
Confidence 3577999999987765 33444443 7777543
No 119
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=80.14 E-value=3 Score=32.51 Aligned_cols=30 Identities=10% Similarity=0.079 Sum_probs=21.3
Q ss_pred HHHHHHHHCCCccccccccCCCCHHHHHHHHH
Q psy1869 67 VVTRYAHQNGFHVERRFGWDCHGLPVEFEIDK 98 (205)
Q Consensus 67 ilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~ 98 (205)
-|||++|+.||++.+.. +.....+...+.+
T Consensus 17 ~LARwLRllGydt~~~~--~~~d~~i~~i~~~ 46 (165)
T COG1656 17 KLARWLRLLGYDTVYSS--NESDDEIILIAKK 46 (165)
T ss_pred HHHHHHHHcCCceeeec--cCCcHHHHHHHhc
Confidence 38999999999999886 3334455555544
No 120
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=79.08 E-value=1.1 Score=38.78 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=24.4
Q ss_pred CeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCC-ccccc
Q psy1869 40 RYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGF-HVERR 82 (205)
Q Consensus 40 ~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~-~V~~~ 82 (205)
++.|++| --|||.|||||..+++ ..++....++ ++.+.
T Consensus 5 ~~~vlSG-~~PSG~lHLGny~ga~----~~~v~~q~~~~~~f~~ 43 (314)
T COG0180 5 KFRVLSG-IQPSGKLHLGNYLGAI----RNWVLLQEEYYECFFF 43 (314)
T ss_pred CceEEec-CCCCCCcchhHhHHHH----HHHHHHhcccCceEEE
Confidence 3444443 4678999999986654 4566666664 66554
No 121
>KOG2145|consensus
Probab=78.08 E-value=1.7 Score=37.21 Aligned_cols=32 Identities=16% Similarity=0.273 Sum_probs=25.3
Q ss_pred hccCCCCCeEEecCCCCCCCcCchhHHhHhHH
Q psy1869 33 KQSKGKPRYSFYDGPPFATGLPHYGHILAGAI 64 (205)
Q Consensus 33 ~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~ 64 (205)
+.-.++++|+++++----++.|||||.-.+++
T Consensus 78 d~~eq~kpFyLYTGRGpSS~smHlGHliPFif 109 (397)
T KOG2145|consen 78 DAYEQGKPFYLYTGRGPSSESMHLGHLIPFIF 109 (397)
T ss_pred HHHHcCCceEEEeCCCCCccccccccchhHHH
Confidence 33467888999999877789999999866654
No 122
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=73.58 E-value=2.6 Score=40.27 Aligned_cols=40 Identities=25% Similarity=0.219 Sum_probs=22.9
Q ss_pred CCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccc
Q psy1869 39 PRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERR 82 (205)
Q Consensus 39 ~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~ 82 (205)
+++.++.| --|||.|||||. +++=+-.+-+...|++|.+.
T Consensus 31 ~~~rv~sG-i~PTG~lHLGng---~~~aik~~~~~q~g~~~~~l 70 (682)
T PTZ00348 31 PLIRCYDG-FEPSGRMHIAQG---IFKAVNVNKCTQAGCEFVFW 70 (682)
T ss_pred CCCEEEEe-eCCCCcCeeccH---HHHHHHHHHHHhCCCeEEEE
Confidence 34555444 467899999993 33311122223578887654
No 123
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=73.05 E-value=2.1 Score=37.22 Aligned_cols=30 Identities=17% Similarity=0.027 Sum_probs=18.5
Q ss_pred CCCCcCchhHHhHhHHHHHHHHHHHHCCCccccc
Q psy1869 49 FATGLPHYGHILAGAIKDVVTRYAHQNGFHVERR 82 (205)
Q Consensus 49 ~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~ 82 (205)
-|||.+||||..+++.. .+.+...|. |.+.
T Consensus 10 ~PTG~~HLGn~l~~~~~---~~~lQ~~~~-~~i~ 39 (333)
T PRK12282 10 RPTGKLHLGHYVGSLKN---RVALQNEHE-QFVL 39 (333)
T ss_pred CCCCcchHHHHHHHHHH---HHHHHhCCC-EEEE
Confidence 56799999998775442 224455564 5433
No 124
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=66.13 E-value=3.2 Score=37.07 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=19.6
Q ss_pred CCCCCcCchhHHhHhHHHHHHHHHHHH-CCCccccc
Q psy1869 48 PFATGLPHYGHILAGAIKDVVTRYAHQ-NGFHVERR 82 (205)
Q Consensus 48 P~p~G~LHiGH~r~~i~~DilaR~~r~-~G~~V~~~ 82 (205)
--|||.+||||..+++ ..+..+ .|+++.+.
T Consensus 9 iqPSG~~HLGnylG~i-----k~wv~lq~~~~~~~~ 39 (398)
T PRK12283 9 MRPTGRLHLGHYHGVL-----KNWVKLQHEYECFFF 39 (398)
T ss_pred eCCCCcchHHHHHHHH-----HHHHHHhcCCcEEEE
Confidence 3588999999987744 243433 47666543
No 125
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=65.59 E-value=8 Score=31.01 Aligned_cols=86 Identities=19% Similarity=0.060 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHH----HHHHh
Q psy1869 63 AIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEK----VVKRI 138 (205)
Q Consensus 63 i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~l 138 (205)
|..|+|..-++..||+|.+.-|+=....| .+++++.++++++-+.+.-.. +.+++
T Consensus 89 Vp~~vl~daLk~~GyrVevr~~~l~T~ap---------------------~~ev~E~vreLse~~~E~~~~~lt~~vrkl 147 (204)
T COG3286 89 VPPDVLIDALKLLGYRVEVRGGELKTNAP---------------------WSEVVELVRELSEVYREARFQPLTRQVRKL 147 (204)
T ss_pred CCHHHHHHHHHhCCceEEeeCceeecCCC---------------------HHHHHHHHHHHHHHHHHHHhccccchhhhh
Confidence 55788888888999999888666333333 333344444444433322111 11222
Q ss_pred ccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCcc
Q psy1869 139 GRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKV 178 (205)
Q Consensus 139 g~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~ 178 (205)
= .-.|..|..-+..+...+.+.|++-++...
T Consensus 148 V---------v~~S~~~~~~~dd~~eeave~Gll~e~E~~ 178 (204)
T COG3286 148 V---------VAVSIVYGLDPDDAAEEAVELGLLEEGEDG 178 (204)
T ss_pred h---------hhhhhHhCCCHHHHHHHHHHhhhhhccchh
Confidence 2 112334445567788999999999877664
No 126
>PF10009 DUF2252: Uncharacterized protein conserved in bacteria (DUF2252); InterPro: IPR018721 This domain has no known function.
Probab=63.60 E-value=51 Score=29.30 Aligned_cols=94 Identities=12% Similarity=0.080 Sum_probs=57.6
Q ss_pred CCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCH---------------HHHHHHHHHhCCCCChhhhhcCH
Q psy1869 49 FATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGL---------------PVEFEIDKKLGIKGPADVAKMGI 113 (205)
Q Consensus 49 ~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~---------------~i~~~a~~~~g~~~~~~~~~~~~ 113 (205)
-..|.+|+++...+ .+-+=..++++++++. .+..+++.. |..
T Consensus 45 ~icGD~Hl~NFG~~------------~~~~~~~vFdiNDFDEa~~gp~~wDl~Rla~Si~laa~~~-gl~---------- 101 (385)
T PF10009_consen 45 WICGDAHLENFGAF------------ASPEGRVVFDINDFDEALPGPFEWDLKRLATSIVLAAREN-GLS---------- 101 (385)
T ss_pred EEeccchhhccCcc------------cCCCCCEEecCCCCCcCCcCChHHHHHHHHHHHHHHHHHc-CCC----------
Confidence 56799999997665 3555566677777652 233334443 542
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHC
Q psy1869 114 AQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNK 169 (205)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~k 169 (205)
.+.+.+.+..+.+.+.+.|..+.-.-.-+.++.| ...-.+.+.+++++..++
T Consensus 102 ---~~~~~~~~~~~~~~Y~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ka~~r 153 (385)
T PF10009_consen 102 ---DKDARKAVRAFLEGYREALADYAGMDPLDVWYFT-PDNASGPVRKALKKARKR 153 (385)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhcCCChhhceecC-chhhHHHHHHHHHHHHHh
Confidence 1246777777888888888777633333445433 445566677777666555
No 127
>COG3171 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.29 E-value=19 Score=26.36 Aligned_cols=58 Identities=14% Similarity=0.040 Sum_probs=42.3
Q ss_pred HHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHC-CCeeecCcc-ccccCCCC
Q psy1869 129 SEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNK-GLVYRGVKV-MPYSTACN 186 (205)
Q Consensus 129 ~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~k-G~iy~~~~~-v~~~~~~~ 186 (205)
+....-++.||.+++|...-.|+.....+.+..++..+++. |+.|.+-+. -|.+.-|.
T Consensus 20 Klhl~EFQeLgF~v~~~~~eg~~ae~~dea~drFidevI~~Ngl~~~G~~~~~~~glvcl 79 (119)
T COG3171 20 KLHLGEFQELGFSVQWSFHEGTSAEDVDEAVDRFIDEVIAPNGLAFAGSGYLDWEGLVCL 79 (119)
T ss_pred hccHHHHHhhheeeEEEecCCccHHHHHHHHHHHHHHHHccCceeEcCCcceeeeeeehH
Confidence 34555677899999998888777777888888888888775 999988744 34444443
No 128
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=59.21 E-value=18 Score=27.58 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=22.5
Q ss_pred hHHhHhHHHHHHHHHHHHCCCccccccccCC
Q psy1869 57 GHILAGAIKDVVTRYAHQNGFHVERRFGWDC 87 (205)
Q Consensus 57 GH~r~~i~~DilaR~~r~~G~~V~~~~G~d~ 87 (205)
||-++ +.+++|.++-.|++|.+.-.+..
T Consensus 24 gHd~g---akvia~~l~d~GfeVi~~g~~~t 51 (143)
T COG2185 24 GHDRG---AKVIARALADAGFEVINLGLFQT 51 (143)
T ss_pred ccccc---hHHHHHHHHhCCceEEecCCcCC
Confidence 58877 67899999999999998755443
No 129
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=51.22 E-value=9.4 Score=26.93 Aligned_cols=13 Identities=31% Similarity=0.332 Sum_probs=9.8
Q ss_pred CCCCCcCchhHHhH
Q psy1869 48 PFATGLPHYGHILA 61 (205)
Q Consensus 48 P~p~G~LHiGH~r~ 61 (205)
.++ |++|+||...
T Consensus 6 G~F-dp~H~GH~~l 18 (105)
T cd02156 6 GEP-GYLHIGHAKL 18 (105)
T ss_pred CCC-CCCCHHHHHH
Confidence 344 8999999754
No 130
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=51.20 E-value=42 Score=25.02 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHCCCcccccccc
Q psy1869 64 IKDVVTRYAHQNGFHVERRFGW 85 (205)
Q Consensus 64 ~~DilaR~~r~~G~~V~~~~G~ 85 (205)
-+++++++++..||+|+..-+.
T Consensus 18 g~~iv~~~l~~~GfeVi~lg~~ 39 (132)
T TIGR00640 18 GAKVIATAYADLGFDVDVGPLF 39 (132)
T ss_pred HHHHHHHHHHhCCcEEEECCCC
Confidence 3799999999999999987443
No 131
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=50.61 E-value=17 Score=25.58 Aligned_cols=48 Identities=17% Similarity=0.122 Sum_probs=30.5
Q ss_pred HHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCcccc
Q psy1869 131 WEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMP 180 (205)
Q Consensus 131 ~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~ 180 (205)
|...|...| .|+-..+.-.-..-.+.|..++++|.+.|++.+-.+.+.
T Consensus 12 IL~hl~~~~--~Dy~k~ia~~l~~~~~~v~~~l~~Le~~GLler~~g~~i 59 (92)
T PF10007_consen 12 ILQHLKKAG--PDYAKSIARRLKIPLEEVREALEKLEEMGLLERVEGKTI 59 (92)
T ss_pred HHHHHHHHC--CCcHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEecCccc
Confidence 444455556 444332222112336778999999999999988887744
No 132
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=49.07 E-value=16 Score=27.11 Aligned_cols=44 Identities=14% Similarity=0.055 Sum_probs=34.3
Q ss_pred hhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHH
Q psy1869 56 YGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKK 99 (205)
Q Consensus 56 iGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~ 99 (205)
|||.++..+++.+.++++..|.+++...--...|..+....++.
T Consensus 4 Ivhg~~~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~ 47 (125)
T PF10137_consen 4 IVHGRDLAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEA 47 (125)
T ss_pred EEeCCCHHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHH
Confidence 68888888999999999999999876543336677777666654
No 133
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=48.95 E-value=84 Score=25.79 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=21.9
Q ss_pred ccccccCCceeccChhhHHHHHHHHHHHHHCCCe
Q psy1869 139 GRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLV 172 (205)
Q Consensus 139 g~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~i 172 (205)
|+.|||.....+ ...+..+++++-..|.+.|++
T Consensus 102 GIdiDwE~~~~~-~~~~~~fv~~Lr~~l~~~~~~ 134 (253)
T cd06545 102 GIDVDLEGPDVT-FGDYLVFIRALYAALKKEGKL 134 (253)
T ss_pred ceeEEeeccCcc-HhHHHHHHHHHHHHHhhcCcE
Confidence 655777665443 346777788877777776764
No 134
>PF04320 DUF469: Protein with unknown function (DUF469); InterPro: IPR007416 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.
Probab=48.22 E-value=27 Score=25.03 Aligned_cols=48 Identities=10% Similarity=-0.063 Sum_probs=38.7
Q ss_pred HHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCcc
Q psy1869 131 WEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKV 178 (205)
Q Consensus 131 ~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~ 178 (205)
...-++.||..+.|.....++...+...+..++..+-.+|+.+-+.+.
T Consensus 8 ~l~EFqelGF~v~~~~~~~~~~e~~D~~~D~fId~Ie~~gL~~~Ggg~ 55 (101)
T PF04320_consen 8 HLDEFQELGFEVSCRFAEGTSEEQIDAFVDAFIDVIEPNGLAFGGGGY 55 (101)
T ss_pred hhhhhheeEEEEEEEECCCCCHHHHHHHHHHHHHHHHhCCCEEecCCc
Confidence 334456799888887777677788999999999988999999998763
No 135
>KOG2713|consensus
Probab=46.54 E-value=9.6 Score=32.61 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=16.0
Q ss_pred CCCCCCcCchhHHhHhHHHH
Q psy1869 47 PPFATGLPHYGHILAGAIKD 66 (205)
Q Consensus 47 ~P~p~G~LHiGH~r~~i~~D 66 (205)
.--|||-+|||+.+++|-.-
T Consensus 19 GIQPTG~~HLGNYLGai~~W 38 (347)
T KOG2713|consen 19 GIQPTGIPHLGNYLGAIKPW 38 (347)
T ss_pred ccCCCCCchhhhhhhhhhHH
Confidence 34688999999999986543
No 136
>PF06940 DUF1287: Domain of unknown function (DUF1287); InterPro: IPR009706 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=44.80 E-value=18 Score=28.22 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=24.4
Q ss_pred CCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccc
Q psy1869 47 PPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVE 80 (205)
Q Consensus 47 ~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~ 80 (205)
.+||+|..-.+. .|+.|++.|-+|..|++..
T Consensus 22 ~~YP~GDvp~~~---GVCTDVViRA~R~~g~DLq 52 (164)
T PF06940_consen 22 IGYPNGDVPDNT---GVCTDVVIRAYRDAGYDLQ 52 (164)
T ss_pred cCCCCCCCCCCC---CccHHHHHHHHHHcCCCHH
Confidence 478888765533 3789999999999998765
No 137
>PRK09620 hypothetical protein; Provisional
Probab=41.66 E-value=27 Score=28.65 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=35.2
Q ss_pred CCCeEEecCCC--CCCCcCchhHHhHhHHHHHHHHHHHHCCCcccccccc
Q psy1869 38 KPRYSFYDGPP--FATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGW 85 (205)
Q Consensus 38 ~~~~~i~~~~P--~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~ 85 (205)
+++++|+.||- +....=.|++..+.-+|=.+|+.+..+|++|+++.|.
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34566666653 3444557777777778899999999999999977664
No 138
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=41.09 E-value=41 Score=20.26 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHCCCeeecCccccc
Q psy1869 156 MESIWWVFSELWNKGLVYRGVKVMPY 181 (205)
Q Consensus 156 ~~~v~~~~~~L~~kG~iy~~~~~v~~ 181 (205)
...+..++.+|.+.|++....+..++
T Consensus 34 ~~tv~~~l~~L~~~g~i~~~~~~g~~ 59 (60)
T smart00345 34 RTTVREALSRLEAEGLVQRRPGSGTF 59 (60)
T ss_pred HHHHHHHHHHHHHCCCEEEecCCeeE
Confidence 46788999999999999877665543
No 139
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=40.28 E-value=1.6e+02 Score=24.84 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHh---ccccccCCceeccChhhHHHHHHHHHHHHHCCCe
Q psy1869 127 YSSEWEKVVKRI---GRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLV 172 (205)
Q Consensus 127 ~~~~~~~~l~~l---g~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~i 172 (205)
+++.+.+.+++. |+.|||.....+....+..+++++-..|..+|++
T Consensus 91 fi~~iv~~l~~~~~DGidiDwE~~~~~d~~~~~~fl~~lr~~l~~~~~~ 139 (313)
T cd02874 91 LINNILALAKKYGYDGVNIDFENVPPEDREAYTQFLRELSDRLHPAGYT 139 (313)
T ss_pred HHHHHHHHHHHhCCCcEEEecccCCHHHHHHHHHHHHHHHHHhhhcCcE
Confidence 444445555544 6567776654333445788888888888877764
No 140
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=39.94 E-value=44 Score=20.60 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHCCCeeecCccccc
Q psy1869 156 MESIWWVFSELWNKGLVYRGVKVMPY 181 (205)
Q Consensus 156 ~~~v~~~~~~L~~kG~iy~~~~~v~~ 181 (205)
...+..++.+|.+.|++....+..|+
T Consensus 39 ~~~v~~~l~~L~~~G~i~~~~~~~~~ 64 (66)
T cd07377 39 RTTVREALRELEAEGLVERRPGRGTF 64 (66)
T ss_pred HHHHHHHHHHHHHCCCEEecCCCeEE
Confidence 56788999999999999876655554
No 141
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=38.66 E-value=43 Score=23.29 Aligned_cols=30 Identities=7% Similarity=-0.009 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHCCCeeecCccccccCC
Q psy1869 155 YMESIWWVFSELWNKGLVYRGVKVMPYSTA 184 (205)
Q Consensus 155 ~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~ 184 (205)
....|..++.+|.++|+|.+..+...+|+.
T Consensus 60 sr~tVsr~L~~Le~~GlI~r~~~~~~~~~n 89 (95)
T TIGR01610 60 SRTHVSDAIKSLARRRIIFRQGMMGIVGVN 89 (95)
T ss_pred CHHHHHHHHHHHHHCCCeeeecCCceeecC
Confidence 356789999999999999988877777765
No 142
>PF15366 DUF4597: Domain of unknown function (DUF4597)
Probab=38.23 E-value=18 Score=22.91 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=9.2
Q ss_pred EecCCCCCCCcC
Q psy1869 43 FYDGPPFATGLP 54 (205)
Q Consensus 43 i~~~~P~p~G~L 54 (205)
|+.+||+|+|-.
T Consensus 25 IIiTPPTPTg~~ 36 (62)
T PF15366_consen 25 IIITPPTPTGMM 36 (62)
T ss_pred eEecCCCCCcee
Confidence 556788999965
No 143
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=36.62 E-value=25 Score=26.81 Aligned_cols=43 Identities=7% Similarity=-0.037 Sum_probs=20.5
Q ss_pred EecCCCCCCCcCchhHHhHhHHHHHHHHHHHH---CCCccccccccCC
Q psy1869 43 FYDGPPFATGLPHYGHILAGAIKDVVTRYAHQ---NGFHVERRFGWDC 87 (205)
Q Consensus 43 i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~---~G~~V~~~~G~d~ 87 (205)
++.++--=-|||||||...+.. .+...++. .|..|.+..+.|.
T Consensus 33 ~Y~~F~~DFGPlnL~~lyrfc~--~l~~~L~~~~~~~k~iv~yts~d~ 78 (141)
T PF14671_consen 33 VYENFYADFGPLNLAQLYRFCC--KLNKKLKSPELKKKKIVHYTSSDP 78 (141)
T ss_dssp ----SSS------HHHHHHHHH--HHHHHHH-GGGTTSEEEEEE-S-H
T ss_pred EEecccCcCCCccHHHHHHHHH--HHHHHHcCHHhcCCeEEEECCCCh
Confidence 4455555669999999998643 34444444 7888888888664
No 144
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=35.68 E-value=19 Score=22.66 Aligned_cols=9 Identities=33% Similarity=0.423 Sum_probs=7.3
Q ss_pred CcCchhHHh
Q psy1869 52 GLPHYGHIL 60 (205)
Q Consensus 52 G~LHiGH~r 60 (205)
.++|.||..
T Consensus 9 dp~H~GH~~ 17 (66)
T TIGR00125 9 DPFHLGHLD 17 (66)
T ss_pred CCCCHHHHH
Confidence 469999975
No 145
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=35.64 E-value=64 Score=20.94 Aligned_cols=30 Identities=17% Similarity=0.058 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHCCCeeecC-ccccccCCC
Q psy1869 156 MESIWWVFSELWNKGLVYRGV-KVMPYSTAC 185 (205)
Q Consensus 156 ~~~v~~~~~~L~~kG~iy~~~-~~v~~~~~~ 185 (205)
...+..++..|.+.|++.... .+..|...+
T Consensus 36 ~~~v~r~L~~L~~~G~V~~~~~~~~~W~i~~ 66 (68)
T smart00550 36 KKEVNRVLYSLEKKGKVCKQGGTPPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHHHCCCEEecCCCCCceEeec
Confidence 457889999999999998765 547777654
No 146
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=35.39 E-value=56 Score=20.64 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHCCCeeecCccccc
Q psy1869 156 MESIWWVFSELWNKGLVYRGVKVMPY 181 (205)
Q Consensus 156 ~~~v~~~~~~L~~kG~iy~~~~~v~~ 181 (205)
...+.+++..|.+.|+++...+..++
T Consensus 38 r~tvr~al~~L~~~g~i~~~~~~G~~ 63 (64)
T PF00392_consen 38 RTTVREALRRLEAEGLIERRPGRGTF 63 (64)
T ss_dssp HHHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred CcHHHHHHHHHHHCCcEEEECCceEE
Confidence 56789999999999999988877654
No 147
>PF03500 Cellsynth_D: Cellulose synthase subunit D; InterPro: IPR022798 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity []. An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsD is 17.3kDa []. The function of BcsD is unknown. This entry represents the D subunit from bacterial cellulose synthase.; PDB: 3AJ1_B 3AJ2_A 3A8E_A.
Probab=34.64 E-value=93 Score=23.79 Aligned_cols=76 Identities=18% Similarity=0.211 Sum_probs=44.8
Q ss_pred CCCCCCCCchHHHHHHHHHHHhcCc-chhhhhc-cCCCCCeEEecCCCC--CCCcCchhHHhHhHHHHHHHHHHHHC-CC
Q psy1869 3 QPVPEYIDFAKEEENILRFWKEHEI-FQECLKQ-SKGKPRYSFYDGPPF--ATGLPHYGHILAGAIKDVVTRYAHQN-GF 77 (205)
Q Consensus 3 ~~~~~~~~~~~~e~~~~~~w~~~~~-~~~~~~~-~~~~~~~~i~~~~P~--p~G~LHiGH~r~~i~~DilaR~~r~~-G~ 77 (205)
+++|+.-+..++|..+++.|..-+= |-.. +. .+...-.+.+.+.|- ..|..+ +++..+++-=++.++++.+ |.
T Consensus 36 ~PLp~~~Tv~~LE~~iN~~la~~~WG~V~L-e~~~~~~~L~I~H~a~P~~~a~g~~~-~~W~aA~LEGlY~~WL~~QgGa 113 (144)
T PF03500_consen 36 HPLPACETVADLERAINAVLARFDWGFVSL-ELSPEDDALRIVHHALPAAGAFGEPA-GAWSAAFLEGLYQRWLQSQGGA 113 (144)
T ss_dssp B-----SSHHHHHHHHHHHHHHHT--EEEE-EEETTTTEEEEEEE-----SS-TTTT-T-TTHHHHHHHHHHHHHTSSTT
T ss_pred CCCCCCCcHHHHHHHHHHHHHhCCCceEEe-eecCCCCceEEEeecCCCCCccCchh-hhhHHHHHHHHHHHHHHHcCCC
Confidence 3567778899999999999998763 1111 11 122334555666663 356666 7888999999999999975 65
Q ss_pred ccc
Q psy1869 78 HVE 80 (205)
Q Consensus 78 ~V~ 80 (205)
...
T Consensus 114 ~~~ 116 (144)
T PF03500_consen 114 FGL 116 (144)
T ss_dssp TSS
T ss_pred CCC
Confidence 544
No 148
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=34.59 E-value=43 Score=27.41 Aligned_cols=33 Identities=12% Similarity=0.326 Sum_probs=24.0
Q ss_pred CCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHH
Q psy1869 37 GKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYA 72 (205)
Q Consensus 37 ~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~ 72 (205)
.+..++++..||+-+|. ||.-+..+..++.++.
T Consensus 147 ~~~~VLv~H~PP~g~g~---~h~GS~alr~~I~~~~ 179 (224)
T cd07388 147 DYRKVFLFHTPPYHKGL---NEQGSHEVAHLIKTHN 179 (224)
T ss_pred CCCeEEEECCCCCCCCC---CccCHHHHHHHHHHhC
Confidence 45679999999998863 5655666677776663
No 149
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=34.24 E-value=19 Score=28.52 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=30.8
Q ss_pred CCCeEEecCCC--CCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCC
Q psy1869 38 KPRYSFYDGPP--FATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDC 87 (205)
Q Consensus 38 ~~~~~i~~~~P--~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~ 87 (205)
+++++|+.||- ..-..==|++..+.-.|-.+|+.+..+|.+|+++.|-..
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~ 54 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSS 54 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcc
Confidence 34566666663 222233345555667799999999999999999988754
No 150
>PRK11702 hypothetical protein; Provisional
Probab=33.81 E-value=61 Score=23.52 Aligned_cols=46 Identities=11% Similarity=0.050 Sum_probs=35.1
Q ss_pred HHHHHHhccccccCCceeccChhhHHHHHHHHH-HHHHCCCeeecCc
Q psy1869 132 EKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFS-ELWNKGLVYRGVK 177 (205)
Q Consensus 132 ~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~-~L~~kG~iy~~~~ 177 (205)
..-++.||+.+.|...-.+++..+...+..++. -+-.+|+.|.+-+
T Consensus 15 v~EFqeLGF~v~~~~~~~~~~e~~D~~vD~fIde~Ie~ngL~f~G~G 61 (108)
T PRK11702 15 IDEFQELGFSVNWRFPEGTSEEQIDATVDAFIDEVIEPNGLAFDGSG 61 (108)
T ss_pred hHhhHhheeEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCceecCCc
Confidence 444567998888877666667778888888886 4678899998855
No 151
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=33.66 E-value=32 Score=19.08 Aligned_cols=20 Identities=25% Similarity=0.551 Sum_probs=17.0
Q ss_pred CCeeecCccccccCCCCCcc
Q psy1869 170 GLVYRGVKVMPYSTACNTPL 189 (205)
Q Consensus 170 G~iy~~~~~v~~~~~~~~~l 189 (205)
|++|.....-|-||.|+..-
T Consensus 8 Gy~y~~~~~~~~CP~Cg~~~ 27 (33)
T cd00350 8 GYIYDGEEAPWVCPVCGAPK 27 (33)
T ss_pred CCEECCCcCCCcCcCCCCcH
Confidence 78998888999999998753
No 152
>PRK14863 bifunctional regulator KidO; Provisional
Probab=32.69 E-value=1.1e+02 Score=25.88 Aligned_cols=44 Identities=18% Similarity=0.319 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhccccccCCceeccChhh-----HHHHHHHHHHHHHCCCe
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLYPWY-----MESIWWVFSELWNKGLV 172 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~~~~-----~~~v~~~~~~L~~kG~i 172 (205)
..+.+.+.|++|| +|+=..+.=..+.. ...+.+.+.+|.+.|.|
T Consensus 88 i~~~~e~SL~rLg--~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gki 136 (292)
T PRK14863 88 VEAEARASLRRMG--VERADAILVHSPTELFGPHGAALWERLQALKDQGLF 136 (292)
T ss_pred HHHHHHHHHHHhC--CCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCc
Confidence 4567889999999 77644333322211 13467899999999997
No 153
>KOG2805|consensus
Probab=31.90 E-value=70 Score=27.90 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHCCCccc--cccccCCC
Q psy1869 62 GAIKDVVTRYAHQNGFHVE--RRFGWDCH 88 (205)
Q Consensus 62 ~i~~DilaR~~r~~G~~V~--~~~G~d~~ 88 (205)
.|=.-+-|+.++.+||+|+ ++-+||..
T Consensus 15 GVDSsVaa~Ll~~~g~~v~gv~M~nWd~~ 43 (377)
T KOG2805|consen 15 GVDSSVAARLLAARGYNVTGVFMKNWDSL 43 (377)
T ss_pred CchHHHHHHHHHhcCCCeeEEeeeccccc
Confidence 3445678999999999997 44577653
No 154
>TIGR02647 DNA conserved hypothetical protein TIGR02647. Members of this family are found, so far, only in the Gammaproteobacteria. The function is unknown. The location on the chromosome usually is not far from housekeeping genes rather than in what is clearly, say, a prophage region. Some members have been annotated in public databases as DNA-binding protein inhibitor Id-2-related protein, putative transcriptional regulator, or hypothetical DNA binding protein.
Probab=30.92 E-value=54 Score=22.24 Aligned_cols=23 Identities=17% Similarity=0.004 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHCCCeeecCcc
Q psy1869 156 MESIWWVFSELWNKGLVYRGVKV 178 (205)
Q Consensus 156 ~~~v~~~~~~L~~kG~iy~~~~~ 178 (205)
...+..+..+|++||+|..-++.
T Consensus 33 ~p~~i~a~~RLheKGLI~~pdGg 55 (77)
T TIGR02647 33 SPAAVAAAARLHEKGLTTQPDGG 55 (77)
T ss_pred CHHHHHHHHHHHHcCCccCCCCC
Confidence 34577788999999999887766
No 155
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=30.01 E-value=75 Score=25.78 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=36.0
Q ss_pred CeEEecCCCCCCCcCchhHHhHhHH----HHHHHHHHHHCCCccccccc
Q psy1869 40 RYSFYDGPPFATGLPHYGHILAGAI----KDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 40 ~~~i~~~~P~p~G~LHiGH~r~~i~----~DilaR~~r~~G~~V~~~~G 84 (205)
-+++.|+-||.+|..-+-|+|..-+ .++...+++-.|.-|.-.+.
T Consensus 113 DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 113 DVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred ceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 6999999999999999999997444 66667777778877765543
No 156
>PF13730 HTH_36: Helix-turn-helix domain
Probab=29.79 E-value=58 Score=19.68 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHCCCe
Q psy1869 156 MESIWWVFSELWNKGLV 172 (205)
Q Consensus 156 ~~~v~~~~~~L~~kG~i 172 (205)
...|.+.+.+|.++|+|
T Consensus 39 ~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 39 RRTVQRAIKELEEKGLI 55 (55)
T ss_pred HHHHHHHHHHHHHCcCC
Confidence 67788999999999986
No 157
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=29.79 E-value=37 Score=20.86 Aligned_cols=15 Identities=27% Similarity=0.565 Sum_probs=11.7
Q ss_pred HHHHHHHHHCCCccc
Q psy1869 66 DVVTRYAHQNGFHVE 80 (205)
Q Consensus 66 DilaR~~r~~G~~V~ 80 (205)
-++.||+|++-++|-
T Consensus 32 ~~llRFLRARkf~v~ 46 (55)
T PF03765_consen 32 NFLLRFLRARKFDVE 46 (55)
T ss_dssp HHHHHHHHHTTT-HH
T ss_pred HHHHHHHHHccCCHH
Confidence 378999999998873
No 158
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=28.74 E-value=25 Score=21.81 Aligned_cols=15 Identities=7% Similarity=0.377 Sum_probs=12.3
Q ss_pred ccccCCCC--CccCccc
Q psy1869 179 MPYSTACN--TPLSNFE 193 (205)
Q Consensus 179 v~~~~~~~--~~ls~~e 193 (205)
--+||+|+ +|+++|-
T Consensus 19 ~~~CPrCG~gvfmA~H~ 35 (51)
T COG1998 19 NRFCPRCGPGVFMADHK 35 (51)
T ss_pred cccCCCCCCcchhhhcC
Confidence 35899999 8999874
No 159
>PF10484 MRP-S23: Mitochondrial ribosomal protein S23; InterPro: IPR023611 This entry represents a domain found in both the mitochondrial ribosomal 23S and 25S proteins. The function of this conserved region is not known. In Saccharomyces cerevisiae (Baker's yeast) the mature mitochondrial ribosomes consist of a small (37S) and a large (54S) subunit. The 37S subunit contains at least 33 different proteins and 1 molecule of RNA (15S). The 54S subunit contains at least 45 different proteins and 1 molecule of RNA (21S) [, ].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome
Probab=27.84 E-value=37 Score=25.36 Aligned_cols=23 Identities=17% Similarity=0.085 Sum_probs=19.6
Q ss_pred HHHHHHHCCCeeecCccccccCC
Q psy1869 162 VFSELWNKGLVYRGVKVMPYSTA 184 (205)
Q Consensus 162 ~~~~L~~kG~iy~~~~~v~~~~~ 184 (205)
=+..|++.|.+-..++|.|||+-
T Consensus 14 Rv~~LlrsG~~k~~dkPLWyDVY 36 (127)
T PF10484_consen 14 RVRGLLRSGAMKWEDKPLWYDVY 36 (127)
T ss_pred HHHHHHHcCCCCcccCCceeeeh
Confidence 34569999999999999999965
No 160
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=27.71 E-value=2.8e+02 Score=24.27 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHCCCccccccccCCCCHHHH
Q psy1869 64 IKDVVTRYAHQNGFHVERRFGWDCHGLPVE 93 (205)
Q Consensus 64 ~~DilaR~~r~~G~~V~~~~G~d~~G~~i~ 93 (205)
++....|.++..|++|.++.+..|=|.|..
T Consensus 179 ~~~a~v~vL~~~G~~v~~~~~~~CCG~p~~ 208 (397)
T TIGR03379 179 LGKDLVKVLNAMNIGVQLLEKEKCCGVPLI 208 (397)
T ss_pred HHHHHHHHHHHCCcEEEeCCCCCccCccHH
Confidence 456788999999999998877778887754
No 161
>PRK10079 phosphonate metabolism transcriptional regulator PhnF; Provisional
Probab=27.42 E-value=69 Score=26.02 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHCCCeeecCcccccc
Q psy1869 156 MESIWWVFSELWNKGLVYRGVKVMPYS 182 (205)
Q Consensus 156 ~~~v~~~~~~L~~kG~iy~~~~~v~~~ 182 (205)
...+.+++..|.+.|+|++..|.+.|-
T Consensus 49 R~TVR~Al~~L~~eGli~r~~G~GtfV 75 (241)
T PRK10079 49 RHTLRRAIDQLVEKGWVQRRQGVGVLV 75 (241)
T ss_pred HHHHHHHHHHHHHCCCEEEecCCEEEE
Confidence 567999999999999999999998775
No 162
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=27.16 E-value=1e+02 Score=22.99 Aligned_cols=33 Identities=12% Similarity=0.023 Sum_probs=23.5
Q ss_pred HHHHHHHHHHCCCccccccccCCCCHHHHHHHHH
Q psy1869 65 KDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDK 98 (205)
Q Consensus 65 ~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~ 98 (205)
++++++.++..||+|+.. |.|..=..+..+|.+
T Consensus 16 kniv~~~L~~~GfeVidL-G~~v~~e~~v~aa~~ 48 (128)
T cd02072 16 NKILDHAFTEAGFNVVNL-GVLSPQEEFIDAAIE 48 (128)
T ss_pred HHHHHHHHHHCCCEEEEC-CCCCCHHHHHHHHHH
Confidence 688999999999999876 555544444444444
No 163
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=26.46 E-value=75 Score=20.01 Aligned_cols=42 Identities=19% Similarity=0.091 Sum_probs=26.6
Q ss_pred HHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccc
Q psy1869 136 KRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVM 179 (205)
Q Consensus 136 ~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v 179 (205)
-..| |+++.+...............++.|.+.|++....+..
T Consensus 17 ~~~G--i~~~~~~~~~g~~~~~~~~~~l~~l~~~Gll~~~~~~l 58 (66)
T PF06969_consen 17 CNEG--IDLSEFEQRFGIDFAEEFQKELEELQEDGLLEIDGGRL 58 (66)
T ss_dssp HHSE--EEHHHHHHHTT--THHH-HHHHHHHHHTTSEEE-SSEE
T ss_pred hHCC--cCHHHHHHHHCcCHHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 3567 77666555444445666688899999999997665443
No 164
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=26.17 E-value=1e+02 Score=23.13 Aligned_cols=33 Identities=12% Similarity=0.025 Sum_probs=22.5
Q ss_pred HHHHHHHHHHCCCccccccccCCCCHHHHHHHHH
Q psy1869 65 KDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDK 98 (205)
Q Consensus 65 ~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~ 98 (205)
..++++.++..||+|... |.|..=..+..+|.+
T Consensus 18 k~iv~~~l~~~GfeVi~L-G~~v~~e~~v~aa~~ 50 (134)
T TIGR01501 18 NKILDHAFTNAGFNVVNL-GVLSPQEEFIKAAIE 50 (134)
T ss_pred HHHHHHHHHHCCCEEEEC-CCCCCHHHHHHHHHH
Confidence 588999999999999876 444433344444443
No 165
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=26.15 E-value=2.6e+02 Score=24.08 Aligned_cols=43 Identities=5% Similarity=-0.013 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHh---ccccccCCcee-----ccChhhHHHHHHHHHHHHHC
Q psy1869 127 YSSEWEKVVKRI---GRWIDFDNDYK-----TLYPWYMESIWWVFSELWNK 169 (205)
Q Consensus 127 ~~~~~~~~l~~l---g~~i~~d~~~~-----T~~~~~~~~v~~~~~~L~~k 169 (205)
+++.+.+.+++. |+.|||..+.. .....+..+++++-.+|.+.
T Consensus 100 fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l~~~ 150 (362)
T cd02872 100 FIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAFEPE 150 (362)
T ss_pred HHHHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 344444445544 76678776653 11235677777777777766
No 166
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=25.59 E-value=1e+02 Score=18.88 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHCCCeeecC
Q psy1869 156 MESIWWVFSELWNKGLVYRGV 176 (205)
Q Consensus 156 ~~~v~~~~~~L~~kG~iy~~~ 176 (205)
...+..++.+|.++|+|.+..
T Consensus 35 ~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 35 KSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEeC
Confidence 567888999999999998764
No 167
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=25.45 E-value=70 Score=26.30 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhccccccCCceeccC---h-hhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLY---P-WYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~---~-~~~~~v~~~~~~L~~kG~iy 173 (205)
..+.+.+.|++|| +++-..+.=.. . .....+...+++|.++|+|-
T Consensus 84 i~~~~~~sL~~L~--~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir 132 (283)
T PF00248_consen 84 IRESLERSLERLG--TDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIR 132 (283)
T ss_dssp HHHHHHHHHHHHT--SSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEE
T ss_pred ccccccccccccc--ccchhccccccccccccccchhhhhhhhcccccccc
Confidence 5568889999999 66522221111 1 24777889999999999974
No 168
>TIGR02325 C_P_lyase_phnF phosphonates metabolism transcriptional regulator PhnF. All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond.
Probab=25.42 E-value=79 Score=25.37 Aligned_cols=28 Identities=11% Similarity=0.159 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHCCCeeecCccccccC
Q psy1869 156 MESIWWVFSELWNKGLVYRGVKVMPYST 183 (205)
Q Consensus 156 ~~~v~~~~~~L~~kG~iy~~~~~v~~~~ 183 (205)
...+.+++..|.+.|+|++..|.+.|-.
T Consensus 46 R~TvR~Al~~L~~eGli~r~~G~GtfV~ 73 (238)
T TIGR02325 46 RHTVRRAIAALVERGLLRAEQGRGTFVA 73 (238)
T ss_pred HHHHHHHHHHHHHCCCEEEecCCEEEEC
Confidence 5679999999999999999998877764
No 169
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=25.39 E-value=3.4e+02 Score=21.38 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=18.5
Q ss_pred CcCchhHHhHhHHHHHHHHHHHHCCCccccc
Q psy1869 52 GLPHYGHILAGAIKDVVTRYAHQNGFHVERR 82 (205)
Q Consensus 52 G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~ 82 (205)
|..|- +-.-+++.+++..|++|++.
T Consensus 92 gd~H~------lG~~~v~~~l~~~G~~vi~l 116 (201)
T cd02070 92 GDIHD------IGKNLVATMLEANGFEVIDL 116 (201)
T ss_pred Cccch------HHHHHHHHHHHHCCCEEEEC
Confidence 56664 33567788999999999654
No 170
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=25.39 E-value=1.9e+02 Score=24.02 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHh---ccccccCCceeccChhhHHHHHHHHHHHHHCCCeeec
Q psy1869 126 RYSSEWEKVVKRI---GRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRG 175 (205)
Q Consensus 126 ~~~~~~~~~l~~l---g~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~ 175 (205)
.+.+.+.+.+++. |+.|||.++- .....+...+.++..+|.++|++.-.
T Consensus 100 ~fv~S~~~~l~~~~fDGiDiDwE~~~-~d~~~f~~ll~~l~~~l~~~~~lt~a 151 (253)
T cd06544 100 NAVSSLTSIIQTYNLDGIDIDYEHFP-ADPDTFVECIGQLITELKNNGVIKVA 151 (253)
T ss_pred HHHHHHHHHHHHhCCCceeeecccCC-cCHHHHHHHHHHHHHHhhhcCCeEEE
Confidence 3444445555555 5557777652 22346788899999999888866533
No 171
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=25.35 E-value=41 Score=26.48 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=25.4
Q ss_pred hhHHhHhHHHHHHHHHHHHCCCccccccccC
Q psy1869 56 YGHILAGAIKDVVTRYAHQNGFHVERRFGWD 86 (205)
Q Consensus 56 iGH~r~~i~~DilaR~~r~~G~~V~~~~G~d 86 (205)
+||..+.+++=-+||.|+.+|+.|..+.=+|
T Consensus 71 ~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD 101 (229)
T PF00975_consen 71 AGWSFGGILAFEMARQLEEAGEEVSRLILID 101 (229)
T ss_dssp EEETHHHHHHHHHHHHHHHTT-SESEEEEES
T ss_pred hccCccHHHHHHHHHHHHHhhhccCceEEec
Confidence 5899999999999999999999997665444
No 172
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=25.29 E-value=83 Score=21.91 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHCCCeee
Q psy1869 156 MESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 156 ~~~v~~~~~~L~~kG~iy~ 174 (205)
...+..++..|.+.|+||-
T Consensus 79 ~~~v~~al~~L~~eG~IYs 97 (102)
T PF08784_consen 79 ENEVRKALDFLSNEGHIYS 97 (102)
T ss_dssp HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHhCCeEec
Confidence 5678899999999999995
No 173
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=25.14 E-value=26 Score=21.65 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=17.1
Q ss_pred HHHHHHHHHHCCCccccccccC
Q psy1869 65 KDVVTRYAHQNGFHVERRFGWD 86 (205)
Q Consensus 65 ~DilaR~~r~~G~~V~~~~G~d 86 (205)
...=.|.+++.|++|+.+..++
T Consensus 20 t~lk~r~L~~~G~~Vi~Ip~~e 41 (58)
T PF08373_consen 20 TKLKHRHLKALGYKVISIPYYE 41 (58)
T ss_pred HHHHHHHHHHCCCEEEEecHHH
Confidence 5566789999999998876543
No 174
>TIGR02404 trehalos_R_Bsub trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli.
Probab=24.73 E-value=84 Score=25.29 Aligned_cols=27 Identities=11% Similarity=-0.001 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHCCCeeecCcccccc
Q psy1869 156 MESIWWVFSELWNKGLVYRGVKVMPYS 182 (205)
Q Consensus 156 ~~~v~~~~~~L~~kG~iy~~~~~v~~~ 182 (205)
...+.+++..|.+.|+|++..|.+.|-
T Consensus 38 R~TVR~Al~~L~~eGli~r~~G~GTfV 64 (233)
T TIGR02404 38 RETVRKALNLLTEAGYIQKIQGKGSIV 64 (233)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCceEEE
Confidence 567999999999999999999998875
No 175
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=24.70 E-value=2.2e+02 Score=18.87 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=15.8
Q ss_pred hHhHHHHHHHHHHHHCCCccccc
Q psy1869 60 LAGAIKDVVTRYAHQNGFHVERR 82 (205)
Q Consensus 60 r~~i~~DilaR~~r~~G~~V~~~ 82 (205)
...++.-+++++++..|++..-+
T Consensus 4 ~~~ll~~~Vaqil~~~Gf~~~~~ 26 (77)
T smart00576 4 AFALLRIAVAQILESAGFDSFQE 26 (77)
T ss_pred HHHHHHHHHHHHHHHcCccccCH
Confidence 34556677888888887766544
No 176
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=24.64 E-value=1.1e+02 Score=16.99 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHCCCe
Q psy1869 156 MESIWWVFSELWNKGLV 172 (205)
Q Consensus 156 ~~~v~~~~~~L~~kG~i 172 (205)
.+.|-.++.+|.++|+|
T Consensus 16 ~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 16 RETVSRILKKLERQGLI 32 (32)
T ss_dssp HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 56777888889888876
No 177
>PRK11402 DNA-binding transcriptional regulator FrlR; Provisional
Probab=24.64 E-value=82 Score=25.51 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHCCCeeecCccccccC
Q psy1869 156 MESIWWVFSELWNKGLVYRGVKVMPYST 183 (205)
Q Consensus 156 ~~~v~~~~~~L~~kG~iy~~~~~v~~~~ 183 (205)
...+.+++..|.+.|+|++..|.+.|-.
T Consensus 47 R~TvR~Al~~L~~eGli~r~~G~GTfV~ 74 (241)
T PRK11402 47 RITIRKAISDLVADGVLIRWQGKGTFVQ 74 (241)
T ss_pred HHHHHHHHHHHHHCCCEEEecCceeEEC
Confidence 5679999999999999999998877753
No 178
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=24.62 E-value=1.7e+02 Score=24.89 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhccccccCCceeccCh---hhHHHHHHHHHHHHHCCCee
Q psy1869 126 RYSSEWEKVVKRIGRWIDFDNDYKTLYP---WYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 126 ~~~~~~~~~l~~lg~~i~~d~~~~T~~~---~~~~~v~~~~~~L~~kG~iy 173 (205)
...+.+.+.|++|| .|+=.-+.=..+ .....+...+++|.+.|+|-
T Consensus 97 ~i~~~~~~SL~rL~--td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir 145 (317)
T TIGR01293 97 HIIEGLKASLERLQ--LEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAM 145 (317)
T ss_pred HHHHHHHHHHHHhC--CCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCee
Confidence 35678899999999 776333322221 23456778999999999974
No 179
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=24.40 E-value=5.7e+02 Score=23.70 Aligned_cols=35 Identities=17% Similarity=0.118 Sum_probs=24.6
Q ss_pred chhHHhHhHHHHHHHHHHHHCCCccccc-cccCCCCHH
Q psy1869 55 HYGHILAGAIKDVVTRYAHQNGFHVERR-FGWDCHGLP 91 (205)
Q Consensus 55 HiGH~r~~i~~DilaR~~r~~G~~V~~~-~G~d~~G~~ 91 (205)
.|.|.-|.|++|-.|.-+ .+|.|+=- +|.|-...+
T Consensus 272 NIAhGcnSiiAt~~AlkL--~dy~VTEAGFgaDlGaEK 307 (554)
T COG2759 272 NIAHGCNSIIATKTALKL--ADYVVTEAGFGADLGAEK 307 (554)
T ss_pred hhhccchhHHHHHHHHhh--cCeEEEecccccccchhh
Confidence 488999999999988644 77777632 565554444
No 180
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=23.78 E-value=1.7e+02 Score=23.94 Aligned_cols=44 Identities=25% Similarity=0.376 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhccccccCCceeccCh----hhHHHHHHHHHHHHHCCCe
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLYP----WYMESIWWVFSELWNKGLV 172 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~~----~~~~~v~~~~~~L~~kG~i 172 (205)
....+.+.|++|| +++-.-+.=..+ .....+...+++|.++|+|
T Consensus 95 ~~~~l~~sL~~L~--~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~i 142 (285)
T cd06660 95 IRRAVEESLKRLG--TDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKI 142 (285)
T ss_pred HHHHHHHHHHHhC--CCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 5568889999998 665332221111 1367889999999999986
No 181
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=23.65 E-value=68 Score=23.08 Aligned_cols=25 Identities=20% Similarity=0.289 Sum_probs=19.1
Q ss_pred chhHHhHhHHHHHHHHHHHHCCCccccc
Q psy1869 55 HYGHILAGAIKDVVTRYAHQNGFHVERR 82 (205)
Q Consensus 55 HiGH~r~~i~~DilaR~~r~~G~~V~~~ 82 (205)
--||...++ .+++-|+.+|++|.+.
T Consensus 8 t~Ghv~P~l---ala~~L~~rGh~V~~~ 32 (139)
T PF03033_consen 8 TRGHVYPFL---ALARALRRRGHEVRLA 32 (139)
T ss_dssp SHHHHHHHH---HHHHHHHHTT-EEEEE
T ss_pred ChhHHHHHH---HHHHHHhccCCeEEEe
Confidence 358887755 6899999999999954
No 182
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=23.37 E-value=1.8e+02 Score=24.05 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhccccccCCceeccCh-----hhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLYP-----WYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~~-----~~~~~v~~~~~~L~~kG~iy 173 (205)
..+.+.+.|++|| .|+-..+.=..+ ...+.+.+.+.+|.+.|+|-
T Consensus 75 ~~~~~~~SL~rL~--~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir 124 (267)
T PRK11172 75 LIPSLKESLQKLR--TDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTR 124 (267)
T ss_pred HHHHHHHHHHHhC--CCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Confidence 5578889999999 765332222211 12355678899999999973
No 183
>PRK03903 transaldolase; Provisional
Probab=23.20 E-value=3.4e+02 Score=23.04 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHH
Q psy1869 124 VMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWN 168 (205)
Q Consensus 124 ~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~ 168 (205)
...-.+.+.+++..+| ||++.-..+....-...-.+.|..|++
T Consensus 230 ~~~~~~~f~~~~~~~g--id~~~v~~~L~~eg~~~F~~af~~ll~ 272 (274)
T PRK03903 230 KIEEIEAFFKELKSHN--IDLENTYQKLLKDGLEAFKQAFEDILK 272 (274)
T ss_pred CHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445677888899999 988766555444444445556666654
No 184
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=22.87 E-value=2e+02 Score=19.97 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=16.9
Q ss_pred hHhHHHHHHHHHHHHCCCccccc
Q psy1869 60 LAGAIKDVVTRYAHQNGFHVERR 82 (205)
Q Consensus 60 r~~i~~DilaR~~r~~G~~V~~~ 82 (205)
.|.--.+-.++.++..|+.|+-+
T Consensus 13 ~N~~~f~~~a~~L~~~G~~vvnP 35 (92)
T PF14359_consen 13 YNRPAFNAAAKRLRAKGYEVVNP 35 (92)
T ss_pred hHHHHHHHHHHHHHHCCCEEeCc
Confidence 45556777888888899888644
No 185
>KOG2623|consensus
Probab=22.69 E-value=1.4e+02 Score=26.86 Aligned_cols=41 Identities=22% Similarity=0.257 Sum_probs=25.8
Q ss_pred CeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 40 RYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 40 ~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
+-.|+.++--.-..|||||....+ .|.++ ...|++++.+.|
T Consensus 63 p~~vYcGfDPTA~SLHvGNLl~lm---~L~hf-qr~Gh~~ialIG 103 (467)
T KOG2623|consen 63 PQYVYCGFDPTAESLHVGNLLALM---VLIHF-QRAGHRPIALIG 103 (467)
T ss_pred CceEEecCCCcHHhhhhcchHHHH---HHHHH-HHcCCCceEEec
Confidence 455666663333459999986633 23444 347999987765
No 186
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=22.62 E-value=49 Score=27.85 Aligned_cols=13 Identities=15% Similarity=0.409 Sum_probs=10.2
Q ss_pred cCccccccCCCCC
Q psy1869 175 GVKVMPYSTACNT 187 (205)
Q Consensus 175 ~~~~v~~~~~~~~ 187 (205)
+.+..||||.||+
T Consensus 260 ~gR~t~~CP~CQ~ 272 (272)
T PRK14810 260 AGRSSHYCPHCQK 272 (272)
T ss_pred CCCccEECcCCcC
Confidence 3477899999984
No 187
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=22.59 E-value=74 Score=23.81 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=15.8
Q ss_pred HHHHHHHHHHCCCccccc
Q psy1869 65 KDVVTRYAHQNGFHVERR 82 (205)
Q Consensus 65 ~DilaR~~r~~G~~V~~~ 82 (205)
..+++++++..|++|++.
T Consensus 20 ~~iv~~~lr~~G~eVi~L 37 (137)
T PRK02261 20 NKILDRALTEAGFEVINL 37 (137)
T ss_pred HHHHHHHHHHCCCEEEEC
Confidence 467889999999999987
No 188
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=22.46 E-value=86 Score=26.16 Aligned_cols=33 Identities=27% Similarity=0.657 Sum_probs=22.5
Q ss_pred CCCeEEecCCC-CCCCcCchhHHhHhHHHHHHHHHHH
Q psy1869 38 KPRYSFYDGPP-FATGLPHYGHILAGAIKDVVTRYAH 73 (205)
Q Consensus 38 ~~~~~i~~~~P-~p~G~LHiGH~r~~i~~DilaR~~r 73 (205)
.++++++.+|| ...|.-|.| +..+.|++.+|.-
T Consensus 174 ~r~IlLfhtpPd~~kg~~h~G---S~~V~dlIk~~~P 207 (255)
T PF14582_consen 174 YRKILLFHTPPDLHKGLIHVG---SAAVRDLIKTYNP 207 (255)
T ss_dssp SEEEEEESS-BTBCTCTBTTS---BHHHHHHHHHH--
T ss_pred ccEEEEEecCCccCCCccccc---HHHHHHHHHhcCC
Confidence 46788899999 666655554 5578899988863
No 189
>KOG4589|consensus
Probab=22.34 E-value=1.3e+02 Score=24.43 Aligned_cols=35 Identities=23% Similarity=0.167 Sum_probs=29.0
Q ss_pred CCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHH
Q psy1869 38 KPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYA 72 (205)
Q Consensus 38 ~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~ 72 (205)
..-.++-++-||+||.--..|.+..-+-|...++.
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~a 170 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFA 170 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHh
Confidence 44589999999999999999999877777666654
No 190
>TIGR02018 his_ut_repres histidine utilization repressor, proteobacterial. This model represents a proteobacterial histidine utilization repressor. It is usually found clustered with the enzymes HutUHIG so that it can regulate its own expression as well. A number of species have several paralogs and may fine-tune the regulation according to levels of degradation intermediates such as urocanate. This family belongs to the larger GntR family of transcriptional regulators.
Probab=21.81 E-value=1e+02 Score=24.76 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHCCCeeecCccccccC
Q psy1869 156 MESIWWVFSELWNKGLVYRGVKVMPYST 183 (205)
Q Consensus 156 ~~~v~~~~~~L~~kG~iy~~~~~v~~~~ 183 (205)
...+.+++..|.+.|+|++..|.+.|-.
T Consensus 39 R~TVR~Al~~L~~eGli~r~~G~GtfV~ 66 (230)
T TIGR02018 39 RMTVNRALRELTDAGLLERRQGVGTFVA 66 (230)
T ss_pred HHHHHHHHHHHHHCCCEEEecCCEEEEc
Confidence 5679999999999999999999887753
No 191
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=21.75 E-value=64 Score=25.78 Aligned_cols=23 Identities=30% Similarity=0.176 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHCCCeeecCc
Q psy1869 155 YMESIWWVFSELWNKGLVYRGVK 177 (205)
Q Consensus 155 ~~~~v~~~~~~L~~kG~iy~~~~ 177 (205)
+.....+++..+.++|++-+++.
T Consensus 152 ~g~~p~evie~~~e~Gll~~~E~ 174 (190)
T PF09840_consen 152 TGLDPEEVIEELLEKGLLEEGED 174 (190)
T ss_pred hCCCHHHHHHHHHhCcccccCCC
Confidence 33447889999999999987543
No 192
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=21.69 E-value=53 Score=27.59 Aligned_cols=13 Identities=15% Similarity=0.452 Sum_probs=10.5
Q ss_pred cCccccccCCCCC
Q psy1869 175 GVKVMPYSTACNT 187 (205)
Q Consensus 175 ~~~~v~~~~~~~~ 187 (205)
+.+..||||.||.
T Consensus 261 ~gR~t~~CP~CQ~ 273 (274)
T PRK01103 261 GGRSTFFCPRCQK 273 (274)
T ss_pred CCCCcEECcCCCC
Confidence 3478999999985
No 193
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=21.47 E-value=58 Score=22.11 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=19.2
Q ss_pred CcCchhHHhH-hHHHHHHHHHHHHCCCcc
Q psy1869 52 GLPHYGHILA-GAIKDVVTRYAHQNGFHV 79 (205)
Q Consensus 52 G~LHiGH~r~-~i~~DilaR~~r~~G~~V 79 (205)
|.|.|--..+ ++|.|.|-||+...-|..
T Consensus 39 G~L~V~PslGRALI~d~L~RFL~k~DY~L 67 (80)
T PF11344_consen 39 GELSVEPSLGRALIQDPLGRFLEKSDYQL 67 (80)
T ss_pred CcEEEccccchHHHHhHHHHHHhhcceec
Confidence 4444433343 689999999998877654
No 194
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=21.26 E-value=1.1e+02 Score=22.90 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHCCCeeecCccc
Q psy1869 155 YMESIWWVFSELWNKGLVYRGVKVM 179 (205)
Q Consensus 155 ~~~~v~~~~~~L~~kG~iy~~~~~v 179 (205)
-...+++.+++|.+.|++++...+.
T Consensus 55 ~rStv~rsl~~L~~~GlV~Rek~~~ 79 (126)
T COG3355 55 SRSTVYRSLQNLLEAGLVEREKVNL 79 (126)
T ss_pred cHHHHHHHHHHHHHcCCeeeeeecc
Confidence 4677999999999999999876543
No 195
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=20.99 E-value=2e+02 Score=24.73 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhccccccCCceeccCh--------------------hhHHHHHHHHHHHHHCCCe
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLYP--------------------WYMESIWWVFSELWNKGLV 172 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~~--------------------~~~~~v~~~~~~L~~kG~i 172 (205)
..+.+++.|++|| .|+-.-+.=..+ .-...+.+.+.+|.++|+|
T Consensus 110 i~~~~e~SL~rL~--~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~aL~~l~~~GkI 173 (346)
T PRK10625 110 IREALHDSLKRLQ--TDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLETLDALAEQQRAGKI 173 (346)
T ss_pred HHHHHHHHHHHhC--CCeEeEEEeeccCcccccccccccccccccCCCCHHHHHHHHHHHHHCCCe
Confidence 4567888899999 665222211111 1135678899999999997
No 196
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=20.78 E-value=1.4e+02 Score=22.97 Aligned_cols=39 Identities=10% Similarity=0.044 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHCCCeeecC---ccccccCCCCCc-cCcccc
Q psy1869 156 MESIWWVFSELWNKGLVYRGV---KVMPYSTACNTP-LSNFES 194 (205)
Q Consensus 156 ~~~v~~~~~~L~~kG~iy~~~---~~v~~~~~~~~~-ls~~ev 194 (205)
...+++++..|.++|.|..+. ..+|||...... +++.|+
T Consensus 32 K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel 74 (169)
T PF07106_consen 32 KTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEEL 74 (169)
T ss_pred HHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhH
Confidence 677999999999999997765 348888777644 455544
No 197
>PF07394 DUF1501: Protein of unknown function (DUF1501); InterPro: IPR010869 This family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long.
Probab=20.77 E-value=1.5e+02 Score=25.90 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHCCCcccccc--ccCCCCHHHHHHH
Q psy1869 62 GAIKDVVTRYAHQNGFHVERRF--GWDCHGLPVEFEI 96 (205)
Q Consensus 62 ~i~~DilaR~~r~~G~~V~~~~--G~d~~G~~i~~~a 96 (205)
+...=+++|-+.-.|-+|.++. |||.|+.......
T Consensus 231 ~~~~~l~a~~~~~~g~~v~~V~~gGwDTH~~~~~~~~ 267 (392)
T PF07394_consen 231 FGQQLLLARRLIEAGVRVVFVSLGGWDTHSNQGNRHA 267 (392)
T ss_pred HHHHHHHHHHHhhcCCEEEEECCCCccCccccHhHHH
Confidence 3445578888888888887774 9999996665443
No 198
>PF13447 Multi-haem_cyto: Seven times multi-haem cytochrome CxxCH; PDB: 1FGJ_B.
Probab=20.74 E-value=2.7e+02 Score=23.46 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHHHHCCCeeec
Q psy1869 154 WYMESIWWVFSELWNKGLVYRG 175 (205)
Q Consensus 154 ~~~~~v~~~~~~L~~kG~iy~~ 175 (205)
.......+++..|+++|++...
T Consensus 241 ~~~~eA~~iv~~L~~~GLL~~~ 262 (267)
T PF13447_consen 241 KKYKEAKKIVEDLYKDGLLDPQ 262 (267)
T ss_dssp HHHHHHHHHHHHHHHCT-STTT
T ss_pred HHHHHHHHHHHHHHHcCCCCCC
Confidence 3456688999999999998654
No 199
>PRK09764 DNA-binding transcriptional repressor MngR; Provisional
Probab=20.74 E-value=1.1e+02 Score=24.78 Aligned_cols=28 Identities=7% Similarity=0.005 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHCCCeeecCccccccC
Q psy1869 156 MESIWWVFSELWNKGLVYRGVKVMPYST 183 (205)
Q Consensus 156 ~~~v~~~~~~L~~kG~iy~~~~~v~~~~ 183 (205)
...+.+++..|.+.|+|++..|.+.|-.
T Consensus 43 R~TvR~Al~~L~~eGli~r~~G~GtfV~ 70 (240)
T PRK09764 43 RVTVRQALRQLVEQQILESIQGSGTYVK 70 (240)
T ss_pred HHHHHHHHHHHHHCCCEEEecCceeEEc
Confidence 5679999999999999999998877753
No 200
>PF03920 TLE_N: Groucho/TLE N-terminal Q-rich domain; InterPro: IPR005617 The N-terminal domain of the Grouch/TLE co-repressor proteins are involved in oligomerisation.; GO: 0005515 protein binding
Probab=20.60 E-value=79 Score=23.84 Aligned_cols=26 Identities=8% Similarity=-0.017 Sum_probs=23.0
Q ss_pred CCCCCcCchhHHhHhHHHHHHHHHHH
Q psy1869 48 PFATGLPHYGHILAGAIKDVVTRYAH 73 (205)
Q Consensus 48 P~p~G~LHiGH~r~~i~~DilaR~~r 73 (205)
..+.|+.|.|...-+++.|.+-|+..
T Consensus 5 ~~~~~~~~~~q~~KfT~~es~drIKe 30 (135)
T PF03920_consen 5 SRHPGPSQPPQPFKFTTSESCDRIKE 30 (135)
T ss_pred CCCCCCCCCCCCccchHHHHHHHHHH
Confidence 36778899999999999999999985
No 201
>COG2188 PhnF Transcriptional regulators [Transcription]
Probab=20.55 E-value=92 Score=25.39 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHCCCeeecCccccccCCC
Q psy1869 156 MESIWWVFSELWNKGLVYRGVKVMPYSTAC 185 (205)
Q Consensus 156 ~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~ 185 (205)
.-.+.+++..|.+.|+|++..|.+.|-..-
T Consensus 45 R~TvRkAL~~L~~eGli~r~~G~GtfV~~~ 74 (236)
T COG2188 45 RMTVRKALDELVEEGLIVRRQGKGTFVASP 74 (236)
T ss_pred HHHHHHHHHHHHHCCcEEEEecCeeEEcCc
Confidence 566999999999999999999998776653
No 202
>PRK14999 histidine utilization repressor; Provisional
Probab=20.54 E-value=1.1e+02 Score=24.74 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHCCCeeecCcccccc
Q psy1869 156 MESIWWVFSELWNKGLVYRGVKVMPYS 182 (205)
Q Consensus 156 ~~~v~~~~~~L~~kG~iy~~~~~v~~~ 182 (205)
...|.+++..|.+.|+|++..|.+.|-
T Consensus 50 R~TVR~Al~~L~~eGli~r~~GkGTfV 76 (241)
T PRK14999 50 RMTINRALRELTDEGWLVRLQGVGTFV 76 (241)
T ss_pred HHHHHHHHHHHHHCCCEEEecCcEEEE
Confidence 567999999999999999999887775
No 203
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=20.51 E-value=2.3e+02 Score=23.94 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHh---ccccccCCceeccChhhHHHHHHHHHHHHHCCCe
Q psy1869 127 YSSEWEKVVKRI---GRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLV 172 (205)
Q Consensus 127 ~~~~~~~~l~~l---g~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~i 172 (205)
+++.+.+.+++. |+.|||.....+....+..+++++=.+|.++|+.
T Consensus 92 fi~~iv~~~~~~~~dGidiD~E~~~~~d~~~~~~fl~eL~~~l~~~~~~ 140 (298)
T cd06549 92 FIANIAAYLERNQADGIVLDFEELPADDLPKYVAFLSELRRRLPAQGKQ 140 (298)
T ss_pred HHHHHHHHHHHhCCCCEEEecCCCChhHHHHHHHHHHHHHHHhhhcCcE
Confidence 444555555555 6667776543333345777788888888777764
No 204
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=20.36 E-value=59 Score=27.59 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=11.0
Q ss_pred ecCccccccCCCCC
Q psy1869 174 RGVKVMPYSTACNT 187 (205)
Q Consensus 174 ~~~~~v~~~~~~~~ 187 (205)
-+.+..+|||.||+
T Consensus 260 ~~gR~t~~CP~CQ~ 273 (273)
T COG0266 260 LGGRSTFYCPVCQK 273 (273)
T ss_pred EcCCcCEeCCCCCC
Confidence 34578999999985
No 205
>PRK10445 endonuclease VIII; Provisional
Probab=20.28 E-value=59 Score=27.21 Aligned_cols=13 Identities=8% Similarity=0.409 Sum_probs=9.9
Q ss_pred cCccccccCCCCC
Q psy1869 175 GVKVMPYSTACNT 187 (205)
Q Consensus 175 ~~~~v~~~~~~~~ 187 (205)
+.+..||||.||.
T Consensus 251 ~gR~t~~CP~CQ~ 263 (263)
T PRK10445 251 SSRPFYWCPGCQK 263 (263)
T ss_pred CCCCcEECCCCcC
Confidence 3477899999984
No 206
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=20.24 E-value=1.3e+02 Score=17.51 Aligned_cols=17 Identities=24% Similarity=0.347 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHCCCe
Q psy1869 156 MESIWWVFSELWNKGLV 172 (205)
Q Consensus 156 ~~~v~~~~~~L~~kG~i 172 (205)
...+.+.+.+|.++|+|
T Consensus 31 ~~tv~~~l~~L~~~g~I 47 (48)
T PF13412_consen 31 RSTVNRYLKKLEEKGLI 47 (48)
T ss_dssp HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHCcCc
Confidence 56688899999999987
Done!