Query psy1869
Match_columns 205
No_of_seqs 113 out of 1166
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 18:24:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1869.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1869hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ile_A Ilers, isoleucyl-tRNA s 100.0 2.8E-51 9.7E-56 387.8 13.1 203 1-204 1-203 (821)
2 1ffy_A Isoleucyl-tRNA syntheta 100.0 1.8E-50 6.1E-55 385.1 18.2 196 3-205 12-207 (917)
3 1gax_A Valrs, valyl-tRNA synth 100.0 1.9E-48 6.4E-53 368.8 15.2 195 4-204 2-196 (862)
4 1wz2_A Leucyl-tRNA synthetase; 100.0 9E-46 3.1E-50 354.9 16.0 187 8-195 3-199 (967)
5 4arc_A Leucine--tRNA ligase; l 100.0 8.1E-45 2.8E-49 343.7 16.1 173 4-195 20-192 (880)
6 1wkb_A Leucyl-tRNA synthetase; 100.0 4.7E-44 1.6E-48 338.2 14.5 188 7-195 2-199 (810)
7 2v0c_A Aminoacyl-tRNA syntheta 100.0 9.3E-44 3.2E-48 337.6 16.0 171 8-196 3-173 (878)
8 3u1f_A Methionyl-tRNA syntheta 100.0 7.4E-38 2.5E-42 284.1 11.4 141 36-195 6-146 (542)
9 1rqg_A Methionyl-tRNA syntheta 100.0 1.2E-35 4.1E-40 277.5 13.8 138 39-195 2-140 (722)
10 3h99_A Methionyl-tRNA syntheta 100.0 1E-34 3.5E-39 264.6 13.3 145 32-195 11-155 (560)
11 2x1l_A Methionyl-tRNA syntheta 100.0 3E-34 1E-38 259.6 13.1 141 36-195 9-149 (524)
12 2csx_A Methionyl-tRNA syntheta 100.0 4.4E-34 1.5E-38 257.0 9.7 139 38-195 4-142 (497)
13 3kfl_A Methionyl-tRNA syntheta 100.0 6.6E-34 2.3E-38 259.5 10.3 141 36-195 23-163 (564)
14 4dlp_A Aminoacyl-tRNA syntheta 100.0 2E-33 6.8E-38 255.0 13.2 140 37-195 23-162 (536)
15 2d5b_A Methionyl-tRNA syntheta 100.0 2.5E-33 8.6E-38 252.1 12.4 138 38-194 2-139 (500)
16 3tqo_A Cysteinyl-tRNA syntheta 99.9 1.9E-26 6.4E-31 204.9 13.7 129 38-186 23-152 (462)
17 3c8z_A Cysteinyl-tRNA syntheta 99.9 3.6E-26 1.2E-30 201.5 13.2 125 40-185 39-168 (414)
18 3sp1_A Cysteinyl-tRNA syntheta 99.9 1.3E-25 4.3E-30 200.8 10.2 126 40-185 42-177 (501)
19 1li5_A Cysrs, cysteinyl-tRNA s 99.9 9.3E-25 3.2E-29 194.7 12.1 126 40-186 22-149 (461)
20 2zue_A Arginyl-tRNA synthetase 99.9 2.5E-21 8.6E-26 178.3 12.3 149 37-189 117-312 (629)
21 1f7u_A Arginyl-tRNA synthetase 99.8 1.2E-20 4.2E-25 172.9 13.1 145 37-184 141-327 (607)
22 3fnr_A Arginyl-tRNA synthetase 99.8 2E-20 6.8E-25 166.6 14.0 165 13-184 7-200 (464)
23 1iq0_A Arginyl-tRNA synthetase 99.8 9.1E-21 3.1E-25 173.7 12.1 172 9-182 49-277 (592)
24 1irx_A Lysyl-tRNA synthetase; 99.8 2.1E-20 7.3E-25 169.0 1.1 141 40-190 20-185 (523)
25 1nzj_A Hypothetical protein YA 99.2 1.2E-11 4.2E-16 104.2 7.4 93 43-174 7-100 (298)
26 2o5r_A Glutamyl-tRNA synthetas 99.2 3E-11 1E-15 108.0 8.2 96 40-174 12-116 (481)
27 3aii_A Glutamyl-tRNA synthetas 99.2 2E-11 6.9E-16 110.0 6.0 94 42-174 97-190 (553)
28 1qtq_A GLNRS, protein (glutami 99.1 1.9E-10 6.6E-15 103.7 8.0 94 42-174 27-121 (553)
29 2hz7_A Glutaminyl-tRNA synthet 99.1 1.6E-10 5.6E-15 108.4 7.1 96 41-174 66-161 (851)
30 2cfo_A Glutamyl-tRNA synthetas 99.0 1.1E-10 3.9E-15 104.4 4.9 92 44-174 4-96 (492)
31 3al0_C Glutamyl-tRNA(Gln) amid 99.0 4.7E-10 1.6E-14 102.4 7.8 95 40-174 129-232 (592)
32 4g6z_A Glutamate-tRNA ligase; 98.9 1.2E-09 4.1E-14 97.5 7.0 93 42-173 26-119 (490)
33 3afh_A Glutamyl-tRNA synthetas 98.9 4.2E-09 1.4E-13 94.2 7.8 94 42-174 26-128 (488)
34 4gri_A Glutamate--tRNA ligase; 98.8 3.3E-09 1.1E-13 95.5 6.7 95 43-174 26-127 (512)
35 1j09_A Glutamyl-tRNA synthetas 98.8 3.8E-09 1.3E-13 94.0 5.7 91 45-174 5-104 (468)
36 2ja2_A Glutamyl-tRNA synthetas 98.8 1E-08 3.5E-13 91.8 7.3 93 43-174 8-109 (498)
37 2dlc_X Tyrosyl-tRNA synthetase 96.6 0.0016 5.5E-08 56.6 4.1 82 37-146 36-118 (394)
38 2cyb_A Tyrosyl-tRNA synthetase 96.0 0.025 8.4E-07 47.7 8.5 42 38-84 30-71 (323)
39 1n3l_A Tyrosyl-tRNA synthetase 95.4 0.027 9.3E-07 48.4 6.5 41 39-84 34-74 (372)
40 3a04_A Tryptophanyl-tRNA synth 94.5 0.018 6.1E-07 49.6 2.8 43 36-83 66-108 (372)
41 2cya_A Tyrosyl-tRNA synthetase 92.6 0.073 2.5E-06 45.6 3.3 41 39-84 34-74 (364)
42 3tzl_A Tryptophanyl-tRNA synth 92.1 0.05 1.7E-06 45.8 1.7 32 49-84 11-42 (322)
43 2j5b_A Tyrosyl-tRNA synthetase 91.9 0.1 3.5E-06 44.4 3.3 43 38-84 38-80 (348)
44 2g36_A Tryptophanyl-tRNA synth 91.9 0.089 3.1E-06 44.6 2.9 33 49-84 20-52 (340)
45 3jxe_A Tryptophanyl-tRNA synth 91.8 0.087 3E-06 45.6 2.8 43 37-84 70-113 (392)
46 2el7_A Tryptophanyl-tRNA synth 91.5 0.059 2E-06 45.7 1.4 33 49-84 9-42 (337)
47 2zp1_A Tyrosyl-tRNA synthetase 90.2 0.14 4.7E-06 42.9 2.5 42 38-84 26-67 (314)
48 1i6k_A TRPRS, tryptophanyl-tRN 90.1 0.11 3.8E-06 43.8 1.8 32 49-84 9-40 (328)
49 3hzr_A Tryptophanyl-tRNA synth 89.7 0.15 5.2E-06 44.0 2.4 44 37-84 79-122 (386)
50 3vgj_A Tyrosyl-tRNA synthetase 89.5 0.2 6.7E-06 43.1 2.9 40 40-84 56-96 (373)
51 2pid_A Tyrosyl-tRNA synthetase 88.2 0.28 9.5E-06 41.9 3.0 40 40-84 46-86 (356)
52 2yxn_A Tyrosyl-tRNA synthetase 87.3 0.34 1.2E-05 40.7 3.0 40 40-84 33-73 (322)
53 2cyc_A Tyrosyl-tRNA synthetase 87.1 0.43 1.5E-05 40.9 3.5 41 40-84 33-73 (375)
54 3prh_A Tryptophanyl-tRNA synth 86.6 0.19 6.6E-06 43.4 1.1 40 39-83 30-73 (388)
55 2yy5_A Tryptophanyl-tRNA synth 86.6 0.21 7.2E-06 42.4 1.3 31 50-84 13-43 (348)
56 2jan_A Tyrosyl-tRNA synthetase 86.2 0.37 1.2E-05 42.2 2.6 40 40-84 32-72 (432)
57 1y42_X Tyrosyl-tRNA synthetase 86.0 0.31 1.1E-05 42.1 2.1 40 40-84 64-104 (392)
58 3kp1_E D-ornithine aminomutase 85.8 0.67 2.3E-05 33.1 3.4 74 108-195 14-100 (121)
59 1jil_A Tyrrs, tyrosyl-tRNA syn 85.4 0.49 1.7E-05 41.2 3.0 40 40-84 32-72 (420)
60 1yi8_B Tryptophanyl-tRNA synth 85.2 0.26 8.8E-06 42.0 1.2 40 40-84 22-61 (351)
61 2ip1_A Tryptophanyl-tRNA synth 85.1 0.41 1.4E-05 41.9 2.4 43 38-84 100-143 (432)
62 3sz3_A Tryptophanyl-tRNA synth 85.0 0.27 9.1E-06 41.7 1.2 31 49-83 14-44 (341)
63 2ts1_A Tyrosyl-tRNA synthetase 84.7 0.49 1.7E-05 41.2 2.7 40 40-84 30-70 (419)
64 1r6u_A Tryptophanyl-tRNA synth 83.7 0.8 2.7E-05 40.1 3.6 43 37-84 105-149 (437)
65 3p0j_A Tyrosyl-tRNA synthetase 83.1 0.61 2.1E-05 43.2 2.7 42 39-84 39-80 (690)
66 3hv0_A Tryptophanyl-tRNA synth 82.9 2.3 7.8E-05 36.7 6.2 44 37-84 71-115 (393)
67 1r6t_A Tryptophanyl-tRNA synth 82.8 0.79 2.7E-05 40.6 3.3 43 37-84 152-196 (477)
68 3tze_A Tryptophanyl-tRNA synth 82.6 0.65 2.2E-05 40.3 2.6 44 37-84 98-142 (406)
69 3i05_A Tryptophanyl-tRNA synth 81.7 0.87 3E-05 39.3 3.0 44 37-84 75-119 (395)
70 1h3f_A Tyrosyl-tRNA synthetase 81.2 0.95 3.2E-05 39.6 3.2 42 38-84 35-77 (432)
71 3n9i_A Tryptophanyl-tRNA synth 76.8 0.88 3E-05 38.6 1.5 31 49-83 23-53 (346)
72 3foc_A Tryptophanyl-tRNA synth 75.2 1.6 5.5E-05 38.3 2.8 44 37-84 88-132 (451)
73 3p0j_A Tyrosyl-tRNA synthetase 74.0 12 0.00039 34.7 8.3 35 50-86 390-425 (690)
74 3aj1_A Cellulose synthase oper 53.8 28 0.00096 26.2 5.5 74 3-76 56-131 (167)
75 1p9o_A Phosphopantothenoylcyst 47.6 7.2 0.00025 32.5 1.6 78 2-87 9-90 (313)
76 2z9e_A Cellulose synthase oper 41.3 57 0.002 24.5 5.6 74 3-77 56-132 (167)
77 1wj5_A Hypothetical protein (r 36.8 31 0.001 24.4 3.2 27 152-178 73-99 (120)
78 2yxb_A Coenzyme B12-dependent 33.2 37 0.0013 24.9 3.5 36 37-82 17-52 (161)
79 3dvk_B Voltage-dependent R-typ 31.6 52 0.0018 16.3 2.7 19 55-73 2-21 (23)
80 2px2_A Genome polyprotein [con 30.7 41 0.0014 27.3 3.5 42 38-80 139-181 (269)
81 2xvc_A ESCRT-III, SSO0910; cel 30.1 43 0.0015 20.6 2.7 18 156-173 39-56 (59)
82 1qbj_A Protein (double-strande 29.6 46 0.0016 21.6 3.1 30 156-185 41-71 (81)
83 3b3d_A YTBE protein, putative 29.5 73 0.0025 25.9 5.0 45 127-173 128-174 (314)
84 3vk8_A Probable formamidopyrim 29.3 15 0.00051 30.2 0.7 15 175-189 275-289 (295)
85 3s2u_A UDP-N-acetylglucosamine 28.8 36 0.0012 28.1 3.1 35 39-83 3-37 (365)
86 2wzm_A Aldo-keto reductase; ox 28.5 76 0.0026 25.4 4.9 45 127-173 94-142 (283)
87 3o0k_A Aldo/keto reductase; ss 27.5 91 0.0031 24.9 5.2 45 127-173 109-157 (283)
88 1vp5_A 2,5-diketo-D-gluconic a 26.9 75 0.0026 25.7 4.6 45 127-173 102-147 (298)
89 3f7j_A YVGN protein; aldo-keto 26.8 77 0.0026 25.2 4.6 45 127-173 90-136 (276)
90 1ur3_M Hypothetical oxidoreduc 26.7 1E+02 0.0035 25.0 5.5 45 127-173 127-174 (319)
91 3n2t_A Putative oxidoreductase 26.6 79 0.0027 26.0 4.8 45 127-173 124-171 (348)
92 3ln3_A Dihydrodiol dehydrogena 26.2 77 0.0026 25.7 4.6 45 127-173 96-162 (324)
93 1us0_A Aldose reductase; oxido 25.9 1E+02 0.0035 24.9 5.3 45 127-173 89-155 (316)
94 1pz1_A GSP69, general stress p 25.9 1E+02 0.0035 25.1 5.3 45 127-173 103-150 (333)
95 1vbj_A Prostaglandin F synthas 25.7 1.1E+02 0.0039 24.3 5.5 45 127-173 93-139 (281)
96 3cz8_A Putative sporulation-sp 25.6 1.9E+02 0.0065 23.3 6.9 45 128-172 100-147 (319)
97 1pyf_A IOLS protein; beta-alph 25.4 1.1E+02 0.0037 24.6 5.3 45 127-173 103-150 (312)
98 1qwk_A Aldose reductase, aldo- 24.8 97 0.0033 25.1 4.9 45 127-173 92-148 (317)
99 3b3e_A YVGN protein; aldo-keto 24.8 85 0.0029 25.5 4.6 45 127-173 124-170 (310)
100 3up8_A Putative 2,5-diketo-D-g 24.3 89 0.003 25.2 4.6 45 127-173 106-153 (298)
101 2heo_A Z-DNA binding protein 1 24.2 49 0.0017 20.3 2.4 27 156-183 39-65 (67)
102 3n6q_A YGHZ aldo-keto reductas 23.4 98 0.0034 25.3 4.8 45 127-173 116-163 (346)
103 2fa5_A Transcriptional regulat 23.0 94 0.0032 21.7 4.1 21 156-176 77-97 (162)
104 1lqa_A TAS protein; TIM barrel 23.0 96 0.0033 25.2 4.6 45 127-173 110-174 (346)
105 3o3r_A Aldo-keto reductase fam 22.9 97 0.0033 25.0 4.6 45 127-173 89-155 (316)
106 3v0s_A Perakine reductase; AKR 22.8 1E+02 0.0035 25.1 4.8 45 127-173 104-151 (337)
107 1gve_A Aflatoxin B1 aldehyde r 22.7 1E+02 0.0034 25.0 4.6 45 127-173 87-134 (327)
108 4f40_A Prostaglandin F2-alpha 22.6 1.1E+02 0.0039 24.3 4.9 45 127-173 94-148 (288)
109 1k3x_A Endonuclease VIII; hydr 22.4 32 0.0011 27.6 1.5 13 175-187 250-262 (262)
110 3gcz_A Polyprotein; flavivirus 22.3 62 0.0021 26.4 3.2 45 37-82 155-201 (282)
111 4fc5_A TON_0340, putative unch 22.3 65 0.0022 26.1 3.3 46 36-83 39-84 (270)
112 3neu_A LIN1836 protein; struct 22.2 71 0.0024 22.1 3.2 29 156-184 51-79 (125)
113 1hw6_A 2,5-diketo-D-gluconic a 22.2 98 0.0033 24.6 4.4 45 127-173 86-134 (278)
114 1k82_A Formamidopyrimidine-DNA 22.1 33 0.0011 27.6 1.5 47 89-139 167-213 (268)
115 2xzf_A Formamidopyrimidine-DNA 21.8 33 0.0011 27.7 1.4 12 176-187 259-270 (271)
116 2bp1_A Aflatoxin B1 aldehyde r 21.5 1.1E+02 0.0038 25.2 4.8 45 127-173 120-167 (360)
117 3h7r_A Aldo-keto reductase; st 21.3 1.1E+02 0.0039 24.9 4.7 44 127-172 108-168 (331)
118 1zgd_A Chalcone reductase; pol 21.1 1.1E+02 0.0036 24.8 4.5 45 127-173 98-161 (312)
119 3tqn_A Transcriptional regulat 21.0 79 0.0027 21.4 3.2 29 156-184 47-75 (113)
120 2nn4_A Hypothetical protein YQ 20.7 1.1E+02 0.0037 19.6 3.4 42 130-176 7-48 (72)
121 3u6p_A Formamidopyrimidine-DNA 20.6 37 0.0013 27.4 1.5 13 175-187 261-273 (273)
122 3h7u_A Aldo-keto reductase; st 20.4 1.3E+02 0.0043 24.7 4.8 44 127-172 112-172 (335)
123 3erp_A Putative oxidoreductase 20.4 1E+02 0.0035 25.4 4.2 45 127-173 137-184 (353)
124 1mzr_A 2,5-diketo-D-gluconate 20.4 1.1E+02 0.0038 24.6 4.4 46 126-173 105-154 (296)
125 2bgs_A Aldose reductase; holoe 20.2 1.2E+02 0.0041 25.0 4.6 45 127-173 123-185 (344)
126 3eau_A Voltage-gated potassium 20.1 1.1E+02 0.0036 24.8 4.2 45 127-173 102-149 (327)
127 1ee8_A MUTM (FPG) protein; bet 20.0 34 0.0012 27.5 1.2 47 89-139 160-206 (266)
No 1
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=2.8e-51 Score=387.79 Aligned_cols=203 Identities=47% Similarity=0.973 Sum_probs=192.3
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccc
Q psy1869 1 MVQPVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVE 80 (205)
Q Consensus 1 ~~~~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~ 80 (205)
||+++ ++|||.++|++|+++|++.++|+...+.+.++++|++++|||||||.|||||+++++++|+++||+||+|++|.
T Consensus 1 ~~~~~-~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~ 79 (821)
T 1ile_A 1 MFKEV-GEPNFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAP 79 (821)
T ss_dssp CCCCC-CCCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCC
T ss_pred CCccc-cCCCHHHHHHHHHHHHHHCCCcccChhhcCCCCcEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCccc
Confidence 78999 89999999999999999999999887656788999999999999999999999999999999999999999999
Q ss_pred cccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHH
Q psy1869 81 RRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIW 160 (205)
Q Consensus 81 ~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~ 160 (205)
+++|||+||+||+.+|++.+|..+...+.+++.++|.+.|++++.++.+.+++++++||+++|||+++.|+++.|.+.++
T Consensus 80 ~~~G~D~~Glpie~~a~k~l~~~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~~~lg~~~dwd~~~~T~d~~~~~~v~ 159 (821)
T 1ile_A 80 RRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIW 159 (821)
T ss_dssp CEEEECCCHHHHHHHHHHHTTCCSHHHHHHHCHHHHHHHHHHHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHH
T ss_pred ccccccCCCchHHHHHHHHhcccccchHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCeEccCCCeEECCHHHHHHHH
Confidence 99999999999999999988886556677889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCeeecCccccccCCCCCccCccccccccccccCC
Q psy1869 161 WVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVDP 204 (205)
Q Consensus 161 ~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~~~~~~~~~~ 204 (205)
++|.+|+++|+||++.++|+|||.|+|+|||+||+.+|+++.+|
T Consensus 160 ~~f~~L~~~Gliy~~~~~v~wcp~~~t~Lad~ev~~G~~~~~~~ 203 (821)
T 1ile_A 160 WSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQDP 203 (821)
T ss_dssp HHHHHHHHTTCEEEECCEEEEETTTTEECCHHHHHHTEEEEEEE
T ss_pred HHHHHHHHcCCeeecCcceEecCCCCCcccHhHhhcCcccccCc
Confidence 99999999999999999999999999999999996458887665
No 2
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=1.8e-50 Score=385.06 Aligned_cols=196 Identities=31% Similarity=0.590 Sum_probs=185.5
Q ss_pred CCCCCCCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccc
Q psy1869 3 QPVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERR 82 (205)
Q Consensus 3 ~~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~ 82 (205)
+.||+++||.++|++|+++|++.++|+...+.+.++++|+|++|||||||.|||||++|++++|+++||.||+|++|.++
T Consensus 12 t~fpm~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~ 91 (917)
T 1ffy_A 12 TDFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYV 91 (917)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHTTHHHHHHHHTTTSCBCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCC
T ss_pred CCCCCCCChHHHhHHHHHHHHHCCCcccchhhccCCCceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 45899999999999999999999999998766678899999999999999999999999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHH
Q psy1869 83 FGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWV 162 (205)
Q Consensus 83 ~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~ 162 (205)
+|||+||+||+.+|++. |+.. .++++++|++.|++++.++++.+++++++||+++|||+++.|+++.|.+.++++
T Consensus 92 ~GwD~hGlpiE~~a~k~-G~~~----~~~~~~~f~~~~~~~~~~~~~~~~~~~~rlG~~~Dwd~~~~T~d~~~~~~v~~~ 166 (917)
T 1ffy_A 92 PGWDTHGLPIEQALTKK-GVDR----KKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRI 166 (917)
T ss_dssp CEEBCCSHHHHHHHHHH-TCCS----TTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHH
T ss_pred ccCchhhHHHHHHHHHc-CCCc----hhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEccCCCeEcCCHHHHHHHHHH
Confidence 99999999999999998 8742 357899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCeeecCccccccCCCCCccCccccccccccccCCC
Q psy1869 163 FSELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVDPA 205 (205)
Q Consensus 163 ~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~~~~~~~~~~s 205 (205)
|.+|+++|+||++.++|+|||.|+|+|||+|| +|++..+||
T Consensus 167 F~~l~~kGliYr~~~~v~wcp~~~T~Lae~eV--ey~d~~~~~ 207 (917)
T 1ffy_A 167 FGEMADKGLIYKGKKPVYWSPSSESSLAEAEI--EYHDKRSAS 207 (917)
T ss_dssp HHHHHHTTCEEEEEEEEEEETTTTEECCGGGE--EEEEEEEEE
T ss_pred HHHHHHcCCeEecccceeccCCCCcCcchhhh--hcccccCce
Confidence 99999999999999999999999999999999 788877653
No 3
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=1.9e-48 Score=368.81 Aligned_cols=195 Identities=23% Similarity=0.388 Sum_probs=180.8
Q ss_pred CCCCCCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCcccccc
Q psy1869 4 PVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRF 83 (205)
Q Consensus 4 ~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~ 83 (205)
+++.+|||.++|++|+++|++ ++|++.. +.++++|+|++|||||||.|||||+++++++|+++||+||+|++|.+++
T Consensus 2 ~~~~~y~~~~~E~~~~~~W~~-~~f~~~~--~~~~~~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~ 78 (862)
T 1gax_A 2 DLPKAYDPKSVEPKWAEKWAK-NPFVANP--KSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLP 78 (862)
T ss_dssp CCCSSCCGGGTHHHHHHHHHH-SCCCCCT--TCCSCEEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEEC
T ss_pred CCccCCChHHHHHHHHHHHHh-CCCccCc--CCCCCcEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCcccccc
Confidence 478899999999999999999 9999874 3567899999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHH
Q psy1869 84 GWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVF 163 (205)
Q Consensus 84 G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~ 163 (205)
|||+||+|++.++++.++..+ ....++++++|++.|++++.++.+.|++++++||+++||++.+.|+++.|.+.++++|
T Consensus 79 G~D~~Glp~e~~vek~l~~~g-~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~rlG~s~Dw~r~~~T~d~~~~~~v~~~F 157 (862)
T 1gax_A 79 GTDHAGIATQVVVERLLLKEG-KTRHDLGREKFLERVWQWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAF 157 (862)
T ss_dssp EEBCCTHHHHHHHHTTTTTTT-SCCSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHcC-CChHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcccCCHHHHHHHHHHH
Confidence 999999999999987765432 2345688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCeeecCccccccCCCCCccCccccccccccccCC
Q psy1869 164 SELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVDP 204 (205)
Q Consensus 164 ~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~~~~~~~~~~ 204 (205)
.+|+++|+||++.++|+|||.|+|+|||+|| +|+++..+
T Consensus 158 ~~L~~kGliYrg~~~v~wcp~~~T~Lsd~EV--~~~e~~g~ 196 (862)
T 1gax_A 158 SRYYHEGLAYRAPRLVNWCPRCETTLSDLEV--ETEPTPGK 196 (862)
T ss_dssp HHHHTTSSEEEECCEEEEETTTTEEECGGGE--EECCEEEE
T ss_pred HHHHHCCCEEecccccccCCCcCcccccccc--ccccccce
Confidence 9999999999999999999999999999999 68887653
No 4
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=9e-46 Score=354.93 Aligned_cols=187 Identities=21% Similarity=0.376 Sum_probs=163.9
Q ss_pred CCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCC
Q psy1869 8 YIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDC 87 (205)
Q Consensus 8 ~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~ 87 (205)
.+||.++|++|+++|++.++|+...+.+.++++|++++|||||||.|||||++|++++|+++||.||+||+|++++|||+
T Consensus 3 ~~~~~~iE~~~~~~W~~~~~f~~~~~~~~~~~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~~GwD~ 82 (967)
T 1wz2_A 3 ELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHI 82 (967)
T ss_dssp -CCCHHHHHHHHHHHHHHTTTSCCGGGSCGGGCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCCCCBBC
T ss_pred CCCHHHHHHHHHHHHHhCCCcccCccccCCCCcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCCCcCCC
Confidence 68999999999999999999998875333448999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCCCChhhh------hcCHHHH--HHHHHHHHHHHHHHHHHHHHHhccccccCCceeccC--hhhHH
Q psy1869 88 HGLPVEFEIDKKLGIKGPADVA------KMGIAQY--NLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLY--PWYME 157 (205)
Q Consensus 88 ~G~~i~~~a~~~~g~~~~~~~~------~~~~~~~--~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~--~~~~~ 157 (205)
||+||+..|++. +......+. ..+.+++ ...|++++.++.+.+++++++||+++||++.+.|++ +.|.+
T Consensus 83 ~GlPie~~a~~~-~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~Dw~r~~~T~d~np~y~~ 161 (967)
T 1wz2_A 83 TGSPIVGIAERI-KNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSK 161 (967)
T ss_dssp CSSHHHHHHHHH-HTTCHHHHHHHHTTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHTTTCCCCTTSCCBCSTTSHHHHH
T ss_pred CCcHHHHHHHHh-hccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceEecCCCeEECCCChhHHH
Confidence 999999988764 221111111 1122222 136999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHCCCeeecCccccccCCCCCccCccccc
Q psy1869 158 SIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESG 195 (205)
Q Consensus 158 ~v~~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~ 195 (205)
.++++|.+|+++|+||++.++|+|||.|+|+|||+||+
T Consensus 162 ~v~~~F~~L~~kGliyr~~~~v~wcp~~~T~Lad~Ev~ 199 (967)
T 1wz2_A 162 FIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLM 199 (967)
T ss_dssp HHHHHHHHTTTTTCEEECCCCCEECTTTSCBCCSSSCS
T ss_pred HHHHHHHHHHHCCCEEEeceEecccCCCCCCcchhhhc
Confidence 99999999999999999999999999999999999995
No 5
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=100.00 E-value=8.1e-45 Score=343.70 Aligned_cols=173 Identities=25% Similarity=0.365 Sum_probs=147.7
Q ss_pred CCCCCCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCcccccc
Q psy1869 4 PVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRF 83 (205)
Q Consensus 4 ~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~ 83 (205)
+|+++|||.+||++||++|+++++|++.. ..++++|++++|||||||+|||||+|+++++|+++||+||+||+|++++
T Consensus 20 ~m~~~y~~~~iE~kw~~~W~~~~~f~~~~--~~~~~~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~ 97 (880)
T 4arc_A 20 HMQEQYRPEEIESKVQLHWDEKRTFEVTE--DESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPI 97 (880)
T ss_dssp -CCSSCCHHHHHHHHHHHHHHTTTTCCCC--CTTSCEEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCC
T ss_pred cccccCChHHHHHHHHHHHHhcCCcccCC--cCCCCCEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEec
Confidence 47789999999999999999999999764 3467899999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHH
Q psy1869 84 GWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVF 163 (205)
Q Consensus 84 G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~ 163 (205)
|||+||+||+..|.+. |+ .+++++.++++.|+++|++||+++||+++++|+++.|.+.++++|
T Consensus 98 G~D~~Glpie~~a~~~-g~----------------~p~~~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f 160 (880)
T 4arc_A 98 GWDAFGLPAEGAAVKN-NT----------------APAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFF 160 (880)
T ss_dssp EECCCSTHHHHHHHHT-TS----------------CHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHH
T ss_pred CccccCcHHHHHHHHc-CC----------------CHHHHHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHH
Confidence 9999999999999876 66 367888899999999999999999999999999999999999999
Q ss_pred HHHHHCCCeeecCccccccCCCCCccCccccc
Q psy1869 164 SELWNKGLVYRGVKVMPYSTACNTPLSNFESG 195 (205)
Q Consensus 164 ~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~ 195 (205)
.+|+++|+||++.+++||||.|+|+||++||.
T Consensus 161 ~~L~ekGliY~~~~~v~wcp~~~t~La~~ev~ 192 (880)
T 4arc_A 161 TELYKKGLVYKKTSAVNWCPNDQTVLANEQVI 192 (880)
T ss_dssp HHHHHTTCEEEEEECC----------------
T ss_pred HHHHHCCCEEEeceeEeecCCcCCEecchhhh
Confidence 99999999999999999999999999998875
No 6
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.7e-44 Score=338.24 Aligned_cols=188 Identities=21% Similarity=0.374 Sum_probs=163.9
Q ss_pred CCCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccC
Q psy1869 7 EYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWD 86 (205)
Q Consensus 7 ~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d 86 (205)
..|||.++|++|+++|++.++|+...+.+.++++|+|++|||||||+|||||+++++++|+++||+||+||+|.+++|||
T Consensus 2 ~~~~~~~~E~~~~~~W~~~~~f~~~~~~~~~~~~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D 81 (810)
T 1wkb_A 2 AELNFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWH 81 (810)
T ss_dssp --CCCHHHHHHHHHHHHHTTTTCCCGGGSCGGGEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBB
T ss_pred CCCCHHHHHHHHHHHHHhCCCcccCchhcCCCCcEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccC
Confidence 36899999999999999999999887655567899999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhCCCCChhhh------hcCHHHH--HHHHHHHHHHHHHHHHHHHHHhccccccCCceeccC--hhhH
Q psy1869 87 CHGLPVEFEIDKKLGIKGPADVA------KMGIAQY--NLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLY--PWYM 156 (205)
Q Consensus 87 ~~G~~i~~~a~~~~g~~~~~~~~------~~~~~~~--~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~--~~~~ 156 (205)
+||+||+..|++. +......+. ....+.+ ...|+++++++.+.+++++++||+++||++++.|++ +.|.
T Consensus 82 ~~G~pie~~a~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~d~~~~~~ 160 (810)
T 1wkb_A 82 ITGSPIVGIAERI-KNRDPKTIWIYRDVYKVPEEILWTFEDPINIVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFS 160 (810)
T ss_dssp CCBSHHHHHHHHH-HTTCHHHHHHHHHTSCCCHHHHHGGGSHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBCSTTSHHHH
T ss_pred CCCChHHHHHHHh-cccCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEecCCceEecCCchHHH
Confidence 9999999988764 211111110 1112221 136899999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHCCCeeecCccccccCCCCCccCccccc
Q psy1869 157 ESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESG 195 (205)
Q Consensus 157 ~~v~~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~ 195 (205)
+.++++|.+|+++|+||++.++++|||+|+|+|||+||+
T Consensus 161 ~~v~~~f~~L~~~Gliy~~~~~v~~~~~~~t~La~~ev~ 199 (810)
T 1wkb_A 161 KFIEWQFWKLKEKGYIVKGAHRVRWDPVVGTPLGDHDLM 199 (810)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTCCS
T ss_pred HHHHHHHHHHHHCCCEEECCeeeeccCCcCCCccHHHHh
Confidence 999999999999999999999999999999999999994
No 7
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=100.00 E-value=9.3e-44 Score=337.63 Aligned_cols=171 Identities=25% Similarity=0.461 Sum_probs=159.5
Q ss_pred CCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCC
Q psy1869 8 YIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDC 87 (205)
Q Consensus 8 ~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~ 87 (205)
+|||.++|++||++|+++++|+... .+.++++|++++|||||||.|||||+|+++++|+++||+||+||+|.+++|||+
T Consensus 3 ~y~~~~iE~kw~~~W~~~~~f~~~~-~~~~~~k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~ 81 (878)
T 2v0c_A 3 KYNPHAIEAKWQRFWEEKGFMKAKD-LPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDA 81 (878)
T ss_dssp CCCCTTHHHHHHHHHHHHTTTCCCS-CCC---EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCC
T ss_pred CCCHHHHHHHHHHHHHHcCCcccCc-ccCCCCCEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCc
Confidence 7999999999999999999999875 245677899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHH
Q psy1869 88 HGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELW 167 (205)
Q Consensus 88 ~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~ 167 (205)
||+||+.+|.+. |. .++++++++++.+++++++||+++||++++.|+++.|.+.++++|.+|+
T Consensus 82 ~Glpie~~a~k~-g~----------------~~~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~ 144 (878)
T 2v0c_A 82 FGLPAENAALKF-GV----------------HPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMW 144 (878)
T ss_dssp SSHHHHHHHHHT-TC----------------CHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHc-CC----------------CHHHHHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHH
Confidence 999999999886 76 3678899999999999999999999999999999999999999999999
Q ss_pred HCCCeeecCccccccCCCCCccCcccccc
Q psy1869 168 NKGLVYRGVKVMPYSTACNTPLSNFESGQ 196 (205)
Q Consensus 168 ~kG~iy~~~~~v~~~~~~~~~ls~~ev~~ 196 (205)
++|+||++.++++|||.|+|+|||+||+.
T Consensus 145 ~kGliY~~~~~v~w~p~~~t~La~~ev~~ 173 (878)
T 2v0c_A 145 EKGLAYRAKGLVNWCPKCQTVLANEQVVE 173 (878)
T ss_dssp HTTCEEEEEEEEEEETTTTEEECGGGEET
T ss_pred HCCCEEEcceeEEEeCCCCCCcCHHHHhc
Confidence 99999999999999999999999999954
No 8
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=100.00 E-value=7.4e-38 Score=284.11 Aligned_cols=141 Identities=21% Similarity=0.220 Sum_probs=133.6
Q ss_pred CCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHH
Q psy1869 36 KGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQ 115 (205)
Q Consensus 36 ~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~ 115 (205)
...++|+|++|+|||||.||||||++++++|+++||+||+||+|.+++|+|+||++|+.+|++. |+
T Consensus 6 ~~~k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~-g~------------- 71 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQK-QV------------- 71 (542)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHT-TS-------------
T ss_pred CCCCCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHc-CC-------------
Confidence 4567899999999999999999999999999999999999999999999999999999999986 76
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCCCCccCccccc
Q psy1869 116 YNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESG 195 (205)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~ 195 (205)
.++++++++.+.+++++++|| |++|.+++|+++.|.+.++++|.+|+++|+||++.+.++||++|+|+|+|.+|+
T Consensus 72 ---~~~e~~~~~~~~~~~~~~~lg--i~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~ 146 (542)
T 3u1f_A 72 ---SPYDFTTAVAGEFKKCFEQMD--YSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNIT 146 (542)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHT--CCCSEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEE
T ss_pred ---CHHHHHHHHHHHHHHHHHHhC--CccCcCccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCcccchhhhhh
Confidence 367899999999999999999 777889999999999999999999999999999999999999999999999996
No 9
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=100.00 E-value=1.2e-35 Score=277.47 Aligned_cols=138 Identities=25% Similarity=0.290 Sum_probs=132.4
Q ss_pred CCeEEecCCCCCCCcCchhHHhH-hHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHH
Q psy1869 39 PRYSFYDGPPFATGLPHYGHILA-GAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYN 117 (205)
Q Consensus 39 ~~~~i~~~~P~p~G~LHiGH~r~-~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~ 117 (205)
++|+|++|||||||.|||||+++ ++++|+++||+|++||+|.+++|||+||+||+.+|++. |.
T Consensus 2 ~~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~-G~--------------- 65 (722)
T 1rqg_A 2 VRYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKE-GR--------------- 65 (722)
T ss_dssp CEEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH-TC---------------
T ss_pred CCEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHc-CC---------------
Confidence 47999999999999999999999 99999999999999999999999999999999999987 77
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCCCCccCccccc
Q psy1869 118 LECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESG 195 (205)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~ 195 (205)
.++++++++.+.+++++++|| |+||.+++|+++.|.+.++++|.+|+++|+||++.+++|||++|+|+|+|.+|+
T Consensus 66 -~p~e~~~~~~~~~~~~~~~lg--is~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~ 140 (722)
T 1rqg_A 66 -SPREIVDEFHEQIKITFQRAK--ISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVI 140 (722)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHT--CCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCC
T ss_pred -CHHHHHHHHHHHHHHHHHHhC--CCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCCcCcchhhcc
Confidence 478999999999999999999 788999999999999999999999999999999999999999999999998884
No 10
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=100.00 E-value=1e-34 Score=264.62 Aligned_cols=145 Identities=21% Similarity=0.232 Sum_probs=133.1
Q ss_pred hhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhc
Q psy1869 32 LKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKM 111 (205)
Q Consensus 32 ~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~ 111 (205)
.+.+.++++|+|++|||||||+|||||+|+++++|+++||+|++|++|.+++|+|+||++|+..|++. |+
T Consensus 11 ~~~~~~~~~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~-g~--------- 80 (560)
T 3h99_A 11 GSMTQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL-GI--------- 80 (560)
T ss_dssp ------CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHH-TS---------
T ss_pred CCCCCCCCcEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHh-CC---------
Confidence 34567889999999999999999999999999999999999999999999999999999999999986 76
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCCCCccCc
Q psy1869 112 GIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSN 191 (205)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~ 191 (205)
.+.++++++.+.+++++++|| |+||.+++|+++.|.+.++++|.+|.++|+||++++.+|||+.|+++|++
T Consensus 81 -------~~~~~~~~~~~~~~~~~~~lg--i~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~~~l~~ 151 (560)
T 3h99_A 81 -------TPEQMIGEMSQEHQTDFAGFN--ISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPD 151 (560)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHTT--CCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCG
T ss_pred -------CHHHHHHHHHHHHHHHHHHcC--CCCCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccCceecc
Confidence 356788889999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q psy1869 192 FESG 195 (205)
Q Consensus 192 ~ev~ 195 (205)
.+|+
T Consensus 152 ~~v~ 155 (560)
T 3h99_A 152 RFVK 155 (560)
T ss_dssp GGEE
T ss_pred hhcC
Confidence 9885
No 11
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=100.00 E-value=3e-34 Score=259.56 Aligned_cols=141 Identities=21% Similarity=0.317 Sum_probs=132.0
Q ss_pred CCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHH
Q psy1869 36 KGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQ 115 (205)
Q Consensus 36 ~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~ 115 (205)
.+++++++++|+|||||+|||||+|+++++|+++||+|++|++|.+++|||+||++|+.+|++. |.
T Consensus 9 ~~~~~~~i~t~~P~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~-g~------------- 74 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKE-GI------------- 74 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHH-TS-------------
T ss_pred CCCCCEEEeeCCCCCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHc-CC-------------
Confidence 4677899999999999999999999999999999999999999999999999999999999886 76
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCCCCccCccccc
Q psy1869 116 YNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESG 195 (205)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~ 195 (205)
.+.++++++.+.+++++++|| |.+|.+++|+++.|.+.++++|.+|.++|+||++++++|||++|+|++++.||+
T Consensus 75 ---~~~~~~~~~~~~~~~~~~~lg--i~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~ 149 (524)
T 2x1l_A 75 ---PAAELARRNSDVFQRLQEKLN--ISFDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDERFFTENETT 149 (524)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHTT--CCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEE
T ss_pred ---CHHHHHHHHHHHHHHHHHHcC--CcCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCccccHHHhc
Confidence 256788889999999999999 888999999999999999999999999999999999999999999999999983
No 12
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=100.00 E-value=4.4e-34 Score=257.01 Aligned_cols=139 Identities=22% Similarity=0.357 Sum_probs=114.4
Q ss_pred CCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHH
Q psy1869 38 KPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYN 117 (205)
Q Consensus 38 ~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~ 117 (205)
+++++|+.|+|||||+|||||+|+++++|+++||++++|++|.++.|+|+||++|+.+|++. |.
T Consensus 4 ~~~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~-g~--------------- 67 (497)
T 2csx_A 4 MKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEEL-GI--------------- 67 (497)
T ss_dssp SCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHS-SS---------------
T ss_pred CCcEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHc-CC---------------
Confidence 56899999999999999999999999999999999999999999999999999999999886 66
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCCCCccCccccc
Q psy1869 118 LECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESG 195 (205)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~ 195 (205)
.+.++++++.+.+++++++|| |+||.+++|+++.|.+.++++|.+|+++|+||++.+.++||+.|++++++.++.
T Consensus 68 -~~~~~~~~~~~~~~~~~~~lg--i~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~ 142 (497)
T 2csx_A 68 -SPKELVDRNAERFKKLWEFLK--IEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELA 142 (497)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTT--CCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC------------------
T ss_pred -CHHHHHHHHHHHHHHHHHHhC--CcCCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhc
Confidence 246688899999999999999 889999999999999999999999999999999999999999999999999883
No 13
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=100.00 E-value=6.6e-34 Score=259.51 Aligned_cols=141 Identities=23% Similarity=0.255 Sum_probs=133.4
Q ss_pred CCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHH
Q psy1869 36 KGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQ 115 (205)
Q Consensus 36 ~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~ 115 (205)
.++++++|+.|+|||||+|||||+|+++++|+++||+|++|++|.+++|+|+||++|+..|.+. |.
T Consensus 23 ~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~-g~------------- 88 (564)
T 3kfl_A 23 KKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQ-GV------------- 88 (564)
T ss_dssp -CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHT-TC-------------
T ss_pred cCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHc-CC-------------
Confidence 4567899999999999999999999999999999999999999999999999999999999885 76
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCCCCccCccccc
Q psy1869 116 YNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESG 195 (205)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~ 195 (205)
.++++++++.+.+++++++|| |.+|.+++|+++.|.+.++++|++|.++|+||++.+.+|||+.|++++++.|+.
T Consensus 89 ---~p~~~~~~~~~~~~~~~~~lg--i~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~~~~~ 163 (564)
T 3kfl_A 89 ---SPMDFTTSVSSEFKQCFQEMN--YDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVA 163 (564)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHTT--CCCSEEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEE
T ss_pred ---CHHHHHHHHHHHHHHHHHHcC--CCCCccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcCCCCCHHHhc
Confidence 367889999999999999999 888999999999999999999999999999999999999999999999999884
No 14
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=100.00 E-value=2e-33 Score=254.96 Aligned_cols=140 Identities=21% Similarity=0.288 Sum_probs=132.6
Q ss_pred CCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHH
Q psy1869 37 GKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQY 116 (205)
Q Consensus 37 ~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~ 116 (205)
++++++|+.|+|||||+|||||+|+++++|+++||+|++|++|.+++|+|++|++|+..|.+. |.
T Consensus 23 ~~~~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~-g~-------------- 87 (536)
T 4dlp_A 23 SREKYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKE-GI-------------- 87 (536)
T ss_dssp -CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHH-TS--------------
T ss_pred CCCCEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHc-CC--------------
Confidence 456899999999999999999999999999999999999999999999999999999999876 76
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCCCCccCccccc
Q psy1869 117 NLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESG 195 (205)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev~ 195 (205)
.+.++++++.+.+++++++|| |.+|.+++|+++.|.+.++++|++|.++|++|++.+++|||++|++++++.+++
T Consensus 88 --~~~~~~~~~~~~~~~~l~~lg--i~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~~~ 162 (536)
T 4dlp_A 88 --TPRDLADRNTSAFRRMAEVLN--SSNDDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEETE 162 (536)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTT--CCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGCE
T ss_pred --CHHHHHHHHHHHHHHHHHHcC--CCCCcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcCcccCHHHhh
Confidence 367888999999999999999 899999999999999999999999999999999999999999999999999984
No 15
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=100.00 E-value=2.5e-33 Score=252.11 Aligned_cols=138 Identities=20% Similarity=0.298 Sum_probs=130.3
Q ss_pred CCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHH
Q psy1869 38 KPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYN 117 (205)
Q Consensus 38 ~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~ 117 (205)
+++++|+.|+|||||+|||||+|+++++|+++||+|++|++|++++|+|+||++|+..|.+. |.
T Consensus 2 ~~~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~-g~--------------- 65 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAA-GE--------------- 65 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHH-TS---------------
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHc-CC---------------
Confidence 35799999999999999999999999999999999999999999999999999999999987 76
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCCCCccCcccc
Q psy1869 118 LECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFES 194 (205)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~~~~ls~~ev 194 (205)
.+.++++++.+.+++++++|| |++|.+++|+++.|.+.++++|.+|.++|+||++.+.++||+.|++++++.++
T Consensus 66 -~~~~~~~~~~~~~~~~~~~lg--i~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l 139 (500)
T 2d5b_A 66 -DPKAFVDRVSGRFKRAWDLLG--IAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKEL 139 (500)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTT--CCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTS
T ss_pred -CHHHHHHHHHHHHHHHHHHhC--CcCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCcCcccCchhc
Confidence 246788889999999999999 78888999999999999999999999999999999999999999999999886
No 16
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=99.94 E-value=1.9e-26 Score=204.91 Aligned_cols=129 Identities=14% Similarity=0.072 Sum_probs=114.7
Q ss_pred CCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHH
Q psy1869 38 KPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYN 117 (205)
Q Consensus 38 ~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~ 117 (205)
..++.++.++|||+|.+||||+|++|++|+++||++++||+|.++.|+|++|++|+..|.+. |.
T Consensus 23 ~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~-g~--------------- 86 (462)
T 3tqo_A 23 SGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGEN-KE--------------- 86 (462)
T ss_dssp TTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHT-TS---------------
T ss_pred CCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHc-CC---------------
Confidence 34677888899999999999999999999999999999999999999999999999999886 76
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeec-CccccccCCCC
Q psy1869 118 LECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRG-VKVMPYSTACN 186 (205)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~-~~~v~~~~~~~ 186 (205)
.++++++++.+.+.+++++||++.++..... ..|...++++|++|+++|++|++ .+.||||+++-
T Consensus 87 -~~~e~a~~~~~~f~~d~~~LgI~~d~~~pra---Te~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~~ 152 (462)
T 3tqo_A 87 -SPAALAERFIQILHEDEKALRVLSPDQEPRA---TQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRRF 152 (462)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTCCCCSBCCBG---GGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTTC
T ss_pred -CHHHHHHHHHHHHHHHHHHcCCCCCccccCh---hhHHHHHHHHHHHHHHCCCEEEecCCcEEeccccc
Confidence 4899999999999999999994444333333 38999999999999999999999 79999999874
No 17
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.93 E-value=3.6e-26 Score=201.48 Aligned_cols=125 Identities=14% Similarity=0.086 Sum_probs=113.9
Q ss_pred CeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHH
Q psy1869 40 RYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLE 119 (205)
Q Consensus 40 ~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~ 119 (205)
+..++.++|+|+|++||||+|++|++|+++||++++||+|.+++|+|++|++|+.+|.+. |. .
T Consensus 39 ~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~-g~----------------~ 101 (414)
T 3c8z_A 39 TATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERD-GI----------------D 101 (414)
T ss_dssp EEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHH-TC----------------C
T ss_pred CceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHc-CC----------------C
Confidence 456677789999999999999999999999999999999999999999999999999986 76 4
Q ss_pred HHHHHHHHHHHHHHHHHHhccccc-cCCceeccChhhHHHHHHHHHHHHHCCCeeecC----ccccccCCC
Q psy1869 120 CRKIVMRYSSEWEKVVKRIGRWID-FDNDYKTLYPWYMESIWWVFSELWNKGLVYRGV----KVMPYSTAC 185 (205)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~lg~~i~-~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~----~~v~~~~~~ 185 (205)
+.++++++.+.+++++++|| |. +|.+.+|++ |...++++|++|.++|++|+++ +.+||+.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~Lg--i~~~d~~~r~t~--~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~ 168 (414)
T 3c8z_A 102 WRTLGDRETQLFREDMAALR--VLPPHDYVAATD--AIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADA 168 (414)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--CCCCSEEEEGGG--CHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTTS
T ss_pred HHHHHHHHHHHHHHHHHHcC--CCCCcceecccc--hHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEchh
Confidence 67889999999999999999 77 888888865 7889999999999999999999 889998764
No 18
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=99.92 E-value=1.3e-25 Score=200.81 Aligned_cols=126 Identities=15% Similarity=0.188 Sum_probs=100.4
Q ss_pred CeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCcccccccc----------CCCCHHHHHHHHHHhCCCCChhhh
Q psy1869 40 RYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGW----------DCHGLPVEFEIDKKLGIKGPADVA 109 (205)
Q Consensus 40 ~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~----------d~~G~~i~~~a~~~~g~~~~~~~~ 109 (205)
++-++.++|+|+|.+||||+|++|++|+++||++++||+|.+++|+ |+||++|+..|.+. |+
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~-g~------- 113 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREK-GL------- 113 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC--------------------C-------
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHc-CC-------
Confidence 5667778899999999999999999999999999999999999766 55599999999886 76
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCCC
Q psy1869 110 KMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTAC 185 (205)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~~ 185 (205)
.++++++++.+.+.+++++|| |.++.++. ..+.|...++++|++|+++|+||++++.||||+++
T Consensus 114 ---------~~~e~a~~~~~~f~~d~~~Lg--i~~d~~~~-~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~ 177 (501)
T 3sp1_A 114 ---------TVYEISEFFTEAFFNDCRKLN--IVYPDKVL-VASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC 177 (501)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHTT--CCCCSEEE-EGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG
T ss_pred ---------CHHHHHHHHHHHHHHHHHHcC--CCCCCccc-CcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc
Confidence 478999999999999999999 66665554 46789999999999999999999999999999986
No 19
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.92 E-value=9.3e-25 Score=194.74 Aligned_cols=126 Identities=18% Similarity=0.122 Sum_probs=112.6
Q ss_pred CeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHH
Q psy1869 40 RYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLE 119 (205)
Q Consensus 40 ~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~ 119 (205)
+..++.+.|+|+|++||||+|++|++|+++||+++.||+|.+++|++++|.+|...|.+. |. .
T Consensus 22 ~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~-g~----------------~ 84 (461)
T 1li5_A 22 EVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANEN-GE----------------S 84 (461)
T ss_dssp EEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHT-TC----------------C
T ss_pred CeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHc-CC----------------C
Confidence 456666788888999999999999999999999999999999999999999999988886 76 4
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccc-CCceeccChhhHHHHHHHHHHHHHCCCeeec-CccccccCCCC
Q psy1869 120 CRKIVMRYSSEWEKVVKRIGRWIDF-DNDYKTLYPWYMESIWWVFSELWNKGLVYRG-VKVMPYSTACN 186 (205)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~lg~~i~~-d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~-~~~v~~~~~~~ 186 (205)
++++++++.+.+.+++++|| |.+ |.+.++++ |.+.+++++++|.++|++|++ ++.+|||+++-
T Consensus 85 ~~~~~~~~~~~f~~~~~~Lg--I~~~d~~~r~t~--~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~~ 149 (461)
T 1li5_A 85 FVAMVDRMIAEMHKDFDALN--ILRPDMEPRATH--HIAEIIELTEQLIAKGHAYVADNGDVMFDVPTD 149 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--CCCCSBCCBGGG--CHHHHHHHHHHHHHTTSEEECTTSCEEECGGGC
T ss_pred HHHHHHHHHHHHHHHHHHcC--CCCCcccccccc--hHHHHHHHHHHHHHCCCEEEecCCCEEEecccc
Confidence 78899999999999999999 777 55556544 789999999999999999999 99999997763
No 20
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=99.85 E-value=2.5e-21 Score=178.30 Aligned_cols=149 Identities=14% Similarity=0.010 Sum_probs=113.8
Q ss_pred CCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHH--hCCC-----------
Q psy1869 37 GKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKK--LGIK----------- 103 (205)
Q Consensus 37 ~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~--~g~~----------- 103 (205)
+++++.|..+.|||||+|||||+|++|++|+++|++++.||+|.+..+++|+|.++...+... +|.+
T Consensus 117 ~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~~~~~ 196 (629)
T 2zue_A 117 KGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFERIMNELRER 196 (629)
T ss_dssp TTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccchhHHHHHHHHHHHHhCCcchhhhhhhccc
Confidence 456799999999999999999999999999999999999999999999999999987655321 1210
Q ss_pred ---C-Chh------hh-------------hcCHHHHH--H----HHHHHHHHHHHHHHHHHHHhccccccCCceeccChh
Q psy1869 104 ---G-PAD------VA-------------KMGIAQYN--L----ECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPW 154 (205)
Q Consensus 104 ---~-~~~------~~-------------~~~~~~~~--~----~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~ 154 (205)
. +.+ +. +.+.+.+. + ..+.+++.+.+.+++++++|| |.+|.+.+|++..
T Consensus 197 ~~~~~~~d~~~g~~y~~~a~~~~~~~~~~~~~~~~~~~~e~gd~~~~~~~~~~~~~f~~~~~~L~--I~~D~~~~es~~~ 274 (629)
T 2zue_A 197 GLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKLESGELYGRKLAEEVVRAQMVTTYKLG--VKYDLLVWESDIV 274 (629)
T ss_dssp TSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHT--CCCSEEEEHHHHH
T ss_pred ccccCcchhhHHHHHHHHHHHHhcCchHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHcC--CccccccCcCccc
Confidence 0 000 00 00111111 0 116778889999999999999 8999999998888
Q ss_pred hHHHHHHHHHHHHHCCCee-----ecCccccccCCCCCcc
Q psy1869 155 YMESIWWVFSELWNKGLVY-----RGVKVMPYSTACNTPL 189 (205)
Q Consensus 155 ~~~~v~~~~~~L~~kG~iy-----~~~~~v~~~~~~~~~l 189 (205)
+.+.+.+++++|.++|++| +.++.+ |..+..+-
T Consensus 275 ~~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~--~v~~~~~g 312 (629)
T 2zue_A 275 RRKLFEIALELLSKNENFYIPSDGKYRGAF--VMDLRKLF 312 (629)
T ss_dssp HTTHHHHHHHHHHTSTTEECCSSSTTTTCE--EEECTTTC
T ss_pred cchhHHHHHHHHHHCCCccccccCCcCCcE--EEECcccC
Confidence 8999999999999999999 555554 44444443
No 21
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=99.84 E-value=1.2e-20 Score=172.90 Aligned_cols=145 Identities=13% Similarity=0.042 Sum_probs=114.9
Q ss_pred CCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHH--HhCCCC-------C--
Q psy1869 37 GKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDK--KLGIKG-------P-- 105 (205)
Q Consensus 37 ~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~--~~g~~~-------~-- 105 (205)
+++++.|....|||+|+|||||+|++|+||+++|++++.||+|++..+++|+|.++...+.. .+|.+. +
T Consensus 141 ~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~G~Q~~~l~~~~~~~g~~~~~~~~~i~~l 220 (607)
T 1f7u_A 141 ENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDPIHHL 220 (607)
T ss_dssp SCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHHHCHHHHH
T ss_pred CCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCcchHHHHHHHHHHHhCchhhccCCChHHH
Confidence 45679999999999999999999999999999999999999999999999999998765432 122100 0
Q ss_pred ---------------------hhhhh----------cCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChh
Q psy1869 106 ---------------------ADVAK----------MGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPW 154 (205)
Q Consensus 106 ---------------------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~ 154 (205)
+.+.+ .+.++..+..+.+++.+++.+++++++|| |.+|.+.++++ .
T Consensus 221 ~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd~e~~~~w~~~~~~~~~~~~~~~~~L~--V~fD~~~~ES~-~ 297 (607)
T 1f7u_A 221 FDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLN--IKYDVYSGESQ-V 297 (607)
T ss_dssp HHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTT--CCCSEEEEGGG-C
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHcC--CcceeecCcch-h
Confidence 11111 12233333456788889999999999999 88898888765 3
Q ss_pred hHHHHHHHHHHHHHCCCeeecCccccccCC
Q psy1869 155 YMESIWWVFSELWNKGLVYRGVKVMPYSTA 184 (205)
Q Consensus 155 ~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~ 184 (205)
+...+.++++.|.++|++|+.+|++|++..
T Consensus 298 ~~~~~~~vi~~L~~kG~~ye~dGa~~~~~~ 327 (607)
T 1f7u_A 298 SKESMLKAIDLFKEKGLTHEDKGAVLIDLT 327 (607)
T ss_dssp CHHHHHHHHHHHHHTTCEEEETTEEEEEGG
T ss_pred hhhHHHHHHHHHHhCCCEEEECCcEEEEec
Confidence 446889999999999999999999988754
No 22
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=99.84 E-value=2e-20 Score=166.62 Aligned_cols=165 Identities=12% Similarity=0.034 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHH
Q psy1869 13 KEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPV 92 (205)
Q Consensus 13 ~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i 92 (205)
-+.+.+.+.-++...|-... . ++++++|-..+|||||+|||||+|+++++|+++|++++.||+|+....++|.|.++
T Consensus 7 ~~~~~l~~i~~~~~~yG~~~--~-~~~~v~vE~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~Q~ 83 (464)
T 3fnr_A 7 FLNELANQALTNPNDFTKGE--K-KQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQI 83 (464)
T ss_dssp HHHHHHHHHHHSGGGTTCCC--C-CSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHH
T ss_pred HHHHHHHHHHHhHHhcCCCC--C-CCCEEEEEeCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccHHH
Confidence 34444444444444443321 2 56789999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHH--------HhCCCC--Ch------hhhhcC-------------HHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy1869 93 EFEIDK--------KLGIKG--PA------DVAKMG-------------IAQYNLECRKIVMRYSSEWEKVVKRIGRWID 143 (205)
Q Consensus 93 ~~~a~~--------~~g~~~--~~------~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~ 143 (205)
...+.. .+|.+. |. .+.+.. .+.....-+..++..++.+++++++|| |.
T Consensus 84 g~l~~~~~~~y~~~~~~~~~~~p~~~y~g~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~--V~ 161 (464)
T 3fnr_A 84 YLLGLSILLSVKESILHENVEYPEQYYKGEYIVDLAKEAFEKFGKEFFSEENIPSLADWAKDKMLVLIKQNLEQAK--IK 161 (464)
T ss_dssp HHHHHHHHHHHHHHTSCCCCCCCSSCCCSHHHHHHHHHHHHHHCGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTT--CC
T ss_pred HHHHHHHHHHHHHHhcCCCCCCchhhcCccHHHHHHHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhC--CC
Confidence 655321 223221 11 011111 111111112233446789999999999 99
Q ss_pred cCCceeccChhhHHHHHHHHHHHHHCCCeeecCccccccCC
Q psy1869 144 FDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTA 184 (205)
Q Consensus 144 ~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~~~v~~~~~ 184 (205)
||.++.+++.+ . .+.+++++|.++|++|+++++.|....
T Consensus 162 fD~~~~Ess~~-~-~~~~vv~~L~~~g~~~e~dGa~~~~~~ 200 (464)
T 3fnr_A 162 IDSYVSERSYY-D-ALNATLESLKEHKGIYEQEGKIWLASS 200 (464)
T ss_dssp CSCEEEGGGGS-T-THHHHHHHHHHTTCEEEETTEEEECGG
T ss_pred ceeecCHHHHH-H-HHHHHHHHHHHCCCEEEeCCeEEEEec
Confidence 99999986654 3 899999999999999999999988653
No 23
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.84 E-value=9.1e-21 Score=173.67 Aligned_cols=172 Identities=11% Similarity=-0.045 Sum_probs=127.5
Q ss_pred CCchHHHHHHHHHHHhcCcchhhh--------------------hc-cCCCC---CeEEecCCCCCCCcCchhHHhHhHH
Q psy1869 9 IDFAKEEENILRFWKEHEIFQECL--------------------KQ-SKGKP---RYSFYDGPPFATGLPHYGHILAGAI 64 (205)
Q Consensus 9 ~~~~~~e~~~~~~w~~~~~~~~~~--------------------~~-~~~~~---~~~i~~~~P~p~G~LHiGH~r~~i~ 64 (205)
-+|.+|-+++.+.+.....+++.. .. ...++ ++.|..+.|||||+|||||+|++|+
T Consensus 49 ~~P~~iA~~i~~~l~~~~~~~~~~~~ggfiN~~l~~~~~~~~~~~~~~~~~~~~g~v~ve~~spn~~~~~HiGH~R~~ii 128 (592)
T 1iq0_A 49 KPPQAIAQELKDRLPLPEFVEEAVPVGGYLNFRLRTEALLREALRPKAPFPRRPGVVLVEHTSVNPNKELHVGHLRNIAL 128 (592)
T ss_dssp SCHHHHHHHHHHTCCCCTTEEEEEEETTEEEEEECHHHHHHHHHSCCCCCCCEEEEEEEECCCCCTTSCCBHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccccCcEEEEEEcCCEEEEEECHHHHHHHHHHHHHhcCcccCeEEEEeeCCCCCCCCcchHHHHHHH
Confidence 478888888888876554443211 00 01223 6899999999999999999999999
Q ss_pred HHHHHHHHHHCCCccccccccCCCCHHHHHHHH--HHhCCCCC-----h--------hhhh---------cCHHHHHHH-
Q psy1869 65 KDVVTRYAHQNGFHVERRFGWDCHGLPVEFEID--KKLGIKGP-----A--------DVAK---------MGIAQYNLE- 119 (205)
Q Consensus 65 ~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~--~~~g~~~~-----~--------~~~~---------~~~~~~~~~- 119 (205)
+|+++|++++.||+|.++.+++|.|.++...+. ..+|.+.. + ++.+ ...+.+.+.
T Consensus 129 gD~laR~l~~~G~~V~~~~~i~D~G~q~~~li~~~~~~g~d~~~~~~~d~~~g~~y~~~~~~~~~~~~~~~a~~~~~~~e 208 (592)
T 1iq0_A 129 GDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKEKYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALE 208 (592)
T ss_dssp HHHHHHHHHHTTEEEEEEEEECTTSHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHCTTTGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCceEEEeccCCcchHHHHHHHHHHHhCCcccCCCCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHhCC
Confidence 999999999999999999999999999865542 23344211 0 0000 000001100
Q ss_pred ---HHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCee-----ecCcccccc
Q psy1869 120 ---CRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVY-----RGVKVMPYS 182 (205)
Q Consensus 120 ---~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy-----~~~~~v~~~ 182 (205)
++++++.+.+.+++++++|| |+||.+.+|++..+.+.+++++++|.++|++| +.++.+|+.
T Consensus 209 ~g~~~~~~~~~~~~~~~~~~~Lg--I~~D~~~~es~~~~~~~v~~~~~~L~~kG~~y~~~~g~~~G~~~~~ 277 (592)
T 1iq0_A 209 RGELREEVNRILLAQMATMHALN--ARYDLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMD 277 (592)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHTT--CCCSEEEEHHHHHHTTHHHHHHHHHTTSTTEECCSSSTTTTCEEEE
T ss_pred chHHHHHHHHHHHHHHHHHHHcC--CEeEEeccCCcccccchHHHHHHHHHHCCCcccCcccCcCCCEEEe
Confidence 27788899999999999999 89999999988888999999999999999999 666665543
No 24
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.78 E-value=2.1e-20 Score=169.02 Aligned_cols=141 Identities=15% Similarity=0.116 Sum_probs=105.0
Q ss_pred CeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCC--HHH---HHHH-HHHhCCCCChhhhhcCH
Q psy1869 40 RYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHG--LPV---EFEI-DKKLGIKGPADVAKMGI 113 (205)
Q Consensus 40 ~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G--~~i---~~~a-~~~~g~~~~~~~~~~~~ 113 (205)
+.+++.++|||||+|||||+|+++++|+++||++++|++|.+++++|++| .+| ...+ ++.+|... .++-
T Consensus 20 ~~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~-~~~p---- 94 (523)
T 1irx_A 20 EKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPI-SEVP---- 94 (523)
T ss_dssp SEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBG-GGSC----
T ss_pred CeEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCc-ccCC----
Confidence 46788788999999999999999999999999999999999999999999 555 2222 22234421 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCceeccChhhHH-HHHHHHHHHHHCC----------------CeeecC
Q psy1869 114 AQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYME-SIWWVFSELWNKG----------------LVYRGV 176 (205)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~-~v~~~~~~L~~kG----------------~iy~~~ 176 (205)
+.| ..|+++++++.+.|.++|++|| |+||.+ ++++. |.. .+++++++|+++| ++|...
T Consensus 95 ~p~-~~~~~~~~~~~~~~~~~l~~Lg--i~~D~~-~~se~-~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~~ 169 (523)
T 1irx_A 95 DPW-GCHESYAEHFMRKFEEEVEKLG--IEVDLL-YASEL-YKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPEN 169 (523)
T ss_dssp CTT-SSSSSHHHHHHHHHHHHHHTTT--CCCEEE-EHHHH-HHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCTT
T ss_pred cch-hhHHHHHHHHHHHHHHHHHHcC--CCceEE-echhh-ccchHHHHHHHHHHHchHHHHHHHHhhccccccccccCC
Confidence 001 1367788999999999999999 788876 55443 666 8999999999999 666553
Q ss_pred cc--ccccCCCCCccC
Q psy1869 177 KV--MPYSTACNTPLS 190 (205)
Q Consensus 177 ~~--v~~~~~~~~~ls 190 (205)
.. .-||+.|++.+.
T Consensus 170 ~~~~~~~~~~~~~~~~ 185 (523)
T 1irx_A 170 WWPAMVYCPEHRREAE 185 (523)
T ss_dssp CCSEEEECTTTCCEEC
T ss_pred ceeccccchhhCCccc
Confidence 11 135888887653
No 25
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.24 E-value=1.2e-11 Score=104.21 Aligned_cols=93 Identities=15% Similarity=0.171 Sum_probs=70.5
Q ss_pred EecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHH
Q psy1869 43 FYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRK 122 (205)
Q Consensus 43 i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~ 122 (205)
++-=+|+|||+|||||+|+++ .+|+.++++.+.++.-+++...+ +.
T Consensus 7 ~~RFAPsPtG~LHiG~~rtal-----~n~l~Ar~~~g~~ilRieDtD~~------R~----------------------- 52 (298)
T 1nzj_A 7 IGRFAPSPSGELHFGSLIAAL-----GSYLQARARQGRWLVRIEDIDPP------RE----------------------- 52 (298)
T ss_dssp EEEECCCTTSCCCHHHHHHHH-----HHHHHHHHTTCEEEEEECCSCGG------GS-----------------------
T ss_pred EEEECcCCCCCccHHHHHHHH-----HHHHHHHhcCCeEEEEEecCCch------hh-----------------------
Confidence 444579999999999999998 45566666677777777775432 10
Q ss_pred HHHHHHHHHHHHHHHhccccccCC-ceeccChhhHHHHHHHHHHHHHCCCeee
Q psy1869 123 IVMRYSSEWEKVVKRIGRWIDFDN-DYKTLYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 123 ~~~~~~~~~~~~l~~lg~~i~~d~-~~~T~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
...+.+.|.++|++|| ++||. .++.+ .+.+...+++++|+++|++|.
T Consensus 53 -~~~~~~~I~~dL~~LG--l~~D~~~~~qS--er~~~y~~~~~~L~~~G~aY~ 100 (298)
T 1nzj_A 53 -VPGAAETILRQLEHYG--LHWDGDVLWQS--QRHDAYREALAWLHEQGLSYY 100 (298)
T ss_dssp -CTTHHHHHHHHHHHTT--CCCSSCCEEGG--GCHHHHHHHHHHHHHTTCEEE
T ss_pred -HHHHHHHHHHHHHHcC--CCCCCCCeeee--CCHHHHHHHHHHHHHcCCccc
Confidence 0126789999999999 99996 33332 456888999999999999997
No 26
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=99.20 E-value=3e-11 Score=107.96 Aligned_cols=96 Identities=18% Similarity=0.170 Sum_probs=72.5
Q ss_pred CeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHH
Q psy1869 40 RYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLE 119 (205)
Q Consensus 40 ~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~ 119 (205)
-++++--+|+|||+|||||+|+++++|.+||. ..|..|+.+--+|. . .
T Consensus 12 ~vv~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~--~~G~~iLRieDtD~-------------~----r------------- 59 (481)
T 2o5r_A 12 HMVRVRFAPSPTGFLHVGGARTALFNFLFARK--EKGKFILRIEDTDL-------------E----R------------- 59 (481)
T ss_dssp -CCEEEECCCCCSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCSSC-------------C----S-------------
T ss_pred eEEEEEECCCCCCCcCHHHHHHHHHHHHHHHH--cCCeEEEEEecCCc-------------c----c-------------
Confidence 46778889999999999999999999999999 58887777543331 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCc---------eeccChhhHHHHHHHHHHHHHCCCeee
Q psy1869 120 CRKIVMRYSSEWEKVVKRIGRWIDFDND---------YKTLYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~lg~~i~~d~~---------~~T~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
....+.+.|.++|++|| ++||.. +. ...+.....+++++|+++|.+|.
T Consensus 60 ---~~~~~~~~I~~~l~wlG--l~~de~p~~gg~~g~y~--QS~r~~~y~~~a~~L~~~G~aY~ 116 (481)
T 2o5r_A 60 ---SEREYEEKLMESLRWLG--LLWDEGPDVGGDHGPYR--QSERVEIYREHAERLVKEGKAYY 116 (481)
T ss_dssp ---GGGHHHHHHHHHHHHHT--CCCSBBTTTBCTTCCCB--GGGGHHHHHHHHHHHHHTTSEEE
T ss_pred ---cHHHHHHHHHHHHHHcC--CCCCCCcccCCCCCcee--eeccHHHHHHHHHHHHHCCCeeE
Confidence 00124567788999999 899852 33 22567778889999999999984
No 27
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.17 E-value=2e-11 Score=110.02 Aligned_cols=94 Identities=15% Similarity=0.135 Sum_probs=73.8
Q ss_pred EEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHH
Q psy1869 42 SFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECR 121 (205)
Q Consensus 42 ~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~ 121 (205)
+++-=+|+|||.|||||+|++++...+|| ++.+.++.-+||.... +.
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar-----~~~G~~iLRieDtD~~------R~---------------------- 143 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYAR-----KYDGRLILRIEDTDPR------RV---------------------- 143 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG------GC----------------------
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc------cc----------------------
Confidence 56777899999999999999988555554 6777888888876543 00
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeee
Q psy1869 122 KIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 122 ~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
...+.+.|.++|++|| ++||..+. .+.+.....+++++|+++|++|.
T Consensus 144 --~~e~~~~I~edL~wLG--l~wd~~~~--qSdr~~~y~~~~~~Li~~G~AY~ 190 (553)
T 3aii_A 144 --DPEAYDMIPADLEWLG--VEWDETVI--QSDRMETYYEYTEKLIERGGAYV 190 (553)
T ss_dssp --CTTHHHHHHHHHHHHT--CCCSEEEE--GGGGHHHHHHHHHHHHHTTSEEE
T ss_pred --cHHHHHHHHHHHHHcC--CCCCCCcc--cccCHHHHHHHHHHHHHcCCcee
Confidence 1137789999999999 99986444 34678889999999999999996
No 28
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=99.08 E-value=1.9e-10 Score=103.67 Aligned_cols=94 Identities=20% Similarity=0.254 Sum_probs=69.6
Q ss_pred EEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHH
Q psy1869 42 SFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECR 121 (205)
Q Consensus 42 ~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~ 121 (205)
+++-=+|.|||.|||||||++++...+|| ++.+.++.-+++.... +
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar-----~~gG~fiLRieDTD~~------R----------------------- 72 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQ-----DYKGQCNLRFDDTNPV------K----------------------- 72 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCGG------G-----------------------
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECCCCch------h-----------------------
Confidence 56677899999999999999998777766 4566777777765431 0
Q ss_pred HHHHHHHHHHHHHHHHhccccccCC-ceeccChhhHHHHHHHHHHHHHCCCeee
Q psy1869 122 KIVMRYSSEWEKVVKRIGRWIDFDN-DYKTLYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 122 ~~~~~~~~~~~~~l~~lg~~i~~d~-~~~T~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
....+.+.|.++|++|| ++||. .+.. | .+.....+.+.+|+++|++|.
T Consensus 73 -~~~e~~~~I~edL~wLG--l~wde~~~~q-S-er~~~~~~~a~~Li~~G~AY~ 121 (553)
T 1qtq_A 73 -EDIEYVESIKNDVEWLG--FHWSGNVRYS-S-DYFDQLHAYAIELINKGLAYV 121 (553)
T ss_dssp -CCHHHHHHHHHHHHHTT--CCCSSSCEEG-G-GGHHHHHHHHHHHHHTTSEEE
T ss_pred -cCHHHHHHHHHHHHHcC--CCCCCCCeeh-c-ccHHHHHHHHHHHHHCCCcee
Confidence 01237789999999999 99954 3332 2 455666677789999999995
No 29
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=99.06 E-value=1.6e-10 Score=108.41 Aligned_cols=96 Identities=18% Similarity=0.257 Sum_probs=72.4
Q ss_pred eEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHH
Q psy1869 41 YSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLEC 120 (205)
Q Consensus 41 ~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~ 120 (205)
-+++-=+|+|||.|||||+|++++...+|| +|.+.++.-++|.... + .
T Consensus 66 ~v~tRFaPSPtG~LHIGhARtAL~n~l~Ar-----~~gG~fiLRIEDTD~~------R---~------------------ 113 (851)
T 2hz7_A 66 RVVTRFPPDPSGYAHLGHVFASLLDFNTAR-----QYGGQFNLRMDDTNPE------L---A------------------ 113 (851)
T ss_dssp SCEEEECCCSSSCCBHHHHHHHHHHHHHHH-----HTTCEEEEEECCCCTT------T---C------------------
T ss_pred ceEEEeCCCCCCCccHHHHHHHHHHHHHHH-----HcCCEEEEEECcCCcc------c---c------------------
Confidence 356667899999999999999998666665 5667777777775432 0 0
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeee
Q psy1869 121 RKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 121 ~~~~~~~~~~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
...+.+.|.++|++|| ++||....- ...+.....+++++|+++|++|.
T Consensus 114 ---~~e~~~~IledL~wLG--l~wde~~~~-qSer~d~y~e~a~~LI~~G~AY~ 161 (851)
T 2hz7_A 114 ---RQEYVDSIADDLKWLG--LDWGEHFYY-ASDYFDRYYAYAEQLIRQGDAYV 161 (851)
T ss_dssp ---CHHHHHHHHHHHHHHT--CCCTTCEEE-GGGGHHHHHHHHHHHHHTTSEEE
T ss_pred ---cHHHHHHHHHHHHHcC--CCCCCCccc-HhhhHHHHHHHHHHHHHCCCcEe
Confidence 1247789999999999 999643222 23678888899999999999995
No 30
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.04 E-value=1.1e-10 Score=104.41 Aligned_cols=92 Identities=15% Similarity=0.120 Sum_probs=67.8
Q ss_pred ecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHH
Q psy1869 44 YDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKI 123 (205)
Q Consensus 44 ~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~ 123 (205)
+-=+|.|||.|||||+|++++.. +.++++.+.++.-++|.+. . ..
T Consensus 4 ~RFAPSPtG~lHiG~artal~n~-----l~Ar~~~G~filRieDtD~--------~-R~--------------------- 48 (492)
T 2cfo_A 4 VRLAPSPTGNLHIGTARTAVFNW-----LYARHRGGKFILRIEDTDR--------E-RS--------------------- 48 (492)
T ss_dssp EEECCCTTSCCBHHHHHHHHHHH-----HHHHHTTCEEEEEECCCSS--------S-SC---------------------
T ss_pred EEeCCCCCCCccHHHHHHHHHHH-----HHHHhcCCeEEEEEeeCCc--------c-cc---------------------
Confidence 33479999999999999998854 4444566667766676532 0 00
Q ss_pred HHHHHHHHHHHHHHhccccccCC-ceeccChhhHHHHHHHHHHHHHCCCeee
Q psy1869 124 VMRYSSEWEKVVKRIGRWIDFDN-DYKTLYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 124 ~~~~~~~~~~~l~~lg~~i~~d~-~~~T~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
...+.+.|.++|++|| ++||. .++. ..+.....+++++|+++|++|.
T Consensus 49 ~~~~~~~i~~dL~wLG--l~wde~~~~Q--S~r~~~y~~~~~~Li~~G~AY~ 96 (492)
T 2cfo_A 49 RPEYTENILEGLQWLG--LTWDEGPYFQ--SDRLDLYRQAIQTLLDKGLAYY 96 (492)
T ss_dssp CHHHHHHHHHHHHHTT--CCCSEEEEEG--GGCHHHHHHHHHHHHHTTSEEE
T ss_pred chHHHHHHHHHHHHcC--CCCCCCCccc--cCCHHHHHHHHHHHHHCCCceE
Confidence 0236789999999999 99996 3332 2567788889999999999995
No 31
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.01 E-value=4.7e-10 Score=102.44 Aligned_cols=95 Identities=18% Similarity=0.155 Sum_probs=69.6
Q ss_pred CeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHH
Q psy1869 40 RYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLE 119 (205)
Q Consensus 40 ~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~ 119 (205)
++.+=.+ |+|||+|||||+|++++.+.+||. ..|.-++.+--+|. ..
T Consensus 129 ~v~~RFa-PsPTG~LHiG~artAl~n~l~Ar~--~~G~~ilRieDtD~-----------------~r------------- 175 (592)
T 3al0_C 129 LVRVRFA-PSPTGHLHVGGARTALFNWMFARK--EGGKFILRIEDTDT-----------------ER------------- 175 (592)
T ss_dssp CCEEEEC-CCSSSCCBHHHHHHHHHHHHHHHH--HTCEEEECBCCCCS-----------------SS-------------
T ss_pred eEEEEEC-CCCCCCccHHHHHHHHHHHHHHHh--cCCcEEEEecCcCh-----------------hh-------------
Confidence 3444344 999999999999999999999996 36665555533221 00
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCc---------eeccChhhHHHHHHHHHHHHHCCCeee
Q psy1869 120 CRKIVMRYSSEWEKVVKRIGRWIDFDND---------YKTLYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~lg~~i~~d~~---------~~T~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
-...+.+.|.++|++|| ++||.. ++.+ .+.....+++++|+++|++|.
T Consensus 176 ---~~~~~~~~I~~dL~wlG--l~~D~~~~~gG~~gp~~qS--er~~~y~~~~~~L~~~G~aY~ 232 (592)
T 3al0_C 176 ---SSREYEQQILESLRWCG--LDWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYY 232 (592)
T ss_dssp ---CCHHHHHHHHHHHHHTT--CCCSBBTTTBCTTCCCBST--TCHHHHHHHHHHHHHTTTEEE
T ss_pred ---ccHHHHHHHHHHHHHcC--CCCCCCCCcCCCCCCeeee--CCHHHHHHHHHHHHHcCCceE
Confidence 01236678999999999 999973 3432 345788899999999999996
No 32
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=98.93 E-value=1.2e-09 Score=97.49 Aligned_cols=93 Identities=20% Similarity=0.241 Sum_probs=68.3
Q ss_pred EEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHH
Q psy1869 42 SFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECR 121 (205)
Q Consensus 42 ~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~ 121 (205)
+++-=+|.|||.|||||+|++++.+.++|-. .| .++.-+++.+.. + .
T Consensus 26 v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~--~G---~filRieDtD~~------R---~------------------- 72 (490)
T 4g6z_A 26 VRTRFAPSPTGFIHLGNIRSALYPWAFARKM--KG---TFVLRIEDTDVE------R---S------------------- 72 (490)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHHHHHHHHHT--TC---EEEEEECCCCGG------G---C-------------------
T ss_pred ceEEeCCCCCCCccHHHHHHHHHHHHHHHhc--CC---eEEEEeCCCCcc------c---c-------------------
Confidence 3455569999999999999999988888742 44 444444543320 0 0
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCc-eeccChhhHHHHHHHHHHHHHCCCee
Q psy1869 122 KIVMRYSSEWEKVVKRIGRWIDFDND-YKTLYPWYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 122 ~~~~~~~~~~~~~l~~lg~~i~~d~~-~~T~~~~~~~~v~~~~~~L~~kG~iy 173 (205)
...+.+.|.++|++|| ++||.. +.. ..+.....+++++|+++|++|
T Consensus 73 --~~~~~~~i~~dl~wlG--l~~d~~~~~q--S~r~~~y~~~~~~Li~~G~aY 119 (490)
T 4g6z_A 73 --SQEAVDAILEGMAWLG--LDYDEGPYYQ--MQRMDRYREVLAQMQEKGLVY 119 (490)
T ss_dssp --CHHHHHHHHHHHHHTT--CCCSEEEEEG--GGCHHHHHHHHHHHHHTTSEE
T ss_pred --cHHHHHHHHHHHHHcC--CCCCCCCccc--ccCHHHHHHHHHHHHHCCCEE
Confidence 1236789999999999 999963 332 256788889999999999999
No 33
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=98.86 E-value=4.2e-09 Score=94.15 Aligned_cols=94 Identities=18% Similarity=0.144 Sum_probs=69.1
Q ss_pred EEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHH
Q psy1869 42 SFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECR 121 (205)
Q Consensus 42 ~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~ 121 (205)
+++-=+|.|||.|||||+|++++.-.+||-. .|.-++.+=-+|. . ..
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~--~G~filRieDtD~---~---------R~------------------- 72 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALFNWMFARKE--GGKFILRIEDTDT---E---------RS------------------- 72 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHHHH--TCEEEECBCCCCT---T---------TC-------------------
T ss_pred ceEEECCCCCCCccHHHHHHHHHHHHHHHHc--CCEEEEEEeeCCc---c---------cc-------------------
Confidence 4556679999999999999999888888753 5655555433332 1 00
Q ss_pred HHHHHHHHHHHHHHHHhccccccCCc---------eeccChhhHHHHHHHHHHHHHCCCeee
Q psy1869 122 KIVMRYSSEWEKVVKRIGRWIDFDND---------YKTLYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 122 ~~~~~~~~~~~~~l~~lg~~i~~d~~---------~~T~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
...+.+.|.++|++|| ++||.. ++.+ .+.....+++++|+++|++|.
T Consensus 73 --~~~~~~~I~~dL~wlG--l~wDe~~~~gG~~gp~~QS--er~~~y~~~~~~L~~~G~aY~ 128 (488)
T 3afh_A 73 --SREYEQQILESLRWCG--LDWDEGPDIGGDFGPYRQS--ERLEIYREYAEKLVEDKRAYY 128 (488)
T ss_dssp --CHHHHHHHHHHHHHTT--CCCSBBTTTBCTTCCCBGG--GCHHHHHHHHHHHHHTTSEEE
T ss_pred --cHHHHHHHHHHHHHcC--CCCCcCCCCCCCCCCeeee--CCHHHHHHHHHHHHHcCCeEe
Confidence 1136678999999999 999983 4432 445788899999999999996
No 34
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=98.84 E-value=3.3e-09 Score=95.49 Aligned_cols=95 Identities=19% Similarity=0.126 Sum_probs=66.7
Q ss_pred EecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHH
Q psy1869 43 FYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRK 122 (205)
Q Consensus 43 i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~ 122 (205)
.+-=+|.|||+|||||+|++++...+||-. .|.-++.+=-+|. . . +
T Consensus 26 rtRFAPsPtG~LHiG~artAl~n~~~Ar~~--~G~fiLRieDtD~---~---------R------------------~-- 71 (512)
T 4gri_A 26 RVRYAPSPTGLQHIGGIRTALFNYFFAKSC--GGKFLLRIEDTDQ---S---------R------------------Y-- 71 (512)
T ss_dssp EEEECCCSSSCCBHHHHHHHHHHHHHHHHT--TCEEEECBCCCCT---T---------S------------------C--
T ss_pred eEEeCcCCCCcccHHHHHHHHHHHHHHHHc--CCEEEEEeCcCCC---C---------c------------------C--
Confidence 344489999999999999999999999853 6765555533331 0 0 0
Q ss_pred HHHHHHHHHHHHHHHhccccccCCcee------c-cChhhHHHHHHHHHHHHHCCCeee
Q psy1869 123 IVMRYSSEWEKVVKRIGRWIDFDNDYK------T-LYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 123 ~~~~~~~~~~~~l~~lg~~i~~d~~~~------T-~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
...+.+.|.++|++|| ++||..-. + ....+...-.+++++|+++|++|.
T Consensus 72 -~~~~~~~I~~~L~wlG--l~wDe~p~~~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~ 127 (512)
T 4gri_A 72 -SPEAENDLYSSLKWLG--ISFDEGPVVGGDYAPYVQSQRSAIYKQYAKYLIESGHAYY 127 (512)
T ss_dssp -CHHHHHHHHHHHHHHT--CCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred -CHHHHHHHHHHHHHcC--CCCCcCCccCCCCCCccccchHHHHHHHHHHHHHcCCccc
Confidence 0136678999999999 99984210 0 122455667778889999999994
No 35
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=98.81 E-value=3.8e-09 Score=93.99 Aligned_cols=91 Identities=21% Similarity=0.259 Sum_probs=66.3
Q ss_pred cCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHH
Q psy1869 45 DGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIV 124 (205)
Q Consensus 45 ~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 124 (205)
-=+|.|||.|||||+|++++...+||- ..|.-++.+ +|.... .. .
T Consensus 5 RFaPsPtG~LHiG~~rtal~n~l~Ar~--~~G~filRi---eDtD~~---------R~---------------------~ 49 (468)
T 1j09_A 5 RIAPSPTGDPHVGTAYIALFNYAWARR--NGGRFIVRI---EDTDRA---------RY---------------------V 49 (468)
T ss_dssp EECCCCSSSCBHHHHHHHHHHHHHHHH--TTCEEEECB---CCCCTT---------SC---------------------C
T ss_pred EeCCCCCCCccHHHHHHHHHHHHHHHH--cCCEEEEEe---CcCCCc---------cc---------------------C
Confidence 347999999999999999998888884 355544444 443211 00 0
Q ss_pred HHHHHHHHHHHHHhccccccCCc---------eeccChhhHHHHHHHHHHHHHCCCeee
Q psy1869 125 MRYSSEWEKVVKRIGRWIDFDND---------YKTLYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 125 ~~~~~~~~~~l~~lg~~i~~d~~---------~~T~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
..+.+.|.++|++|| ++||.. +.. +.+.....+++++|+++|++|.
T Consensus 50 ~~~~~~I~~dl~wlG--l~wd~~~~~gG~~gp~~Q--S~r~~~y~~~~~~L~~~G~aY~ 104 (468)
T 1j09_A 50 PGAEERILAALKWLG--LSYDEGPDVGGPHGPYRQ--SERLPLYQKYAEELLKRGWAYR 104 (468)
T ss_dssp TTHHHHHHHHHHHTT--CCCSBBTTTBCTTCCCBG--GGCHHHHHHHHHHHHHHTSEEE
T ss_pred hHHHHHHHHHHHHcC--CCCCCCCCCCCCCCCeec--cCCHHHHHHHHHHHHHcCCeEE
Confidence 125678999999999 999974 332 2567788889999999999994
No 36
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=98.77 E-value=1e-08 Score=91.79 Aligned_cols=93 Identities=22% Similarity=0.202 Sum_probs=69.3
Q ss_pred EecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHH
Q psy1869 43 FYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRK 122 (205)
Q Consensus 43 i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~ 122 (205)
++-=+|.|||.|||||+|++++.-.+||-. .|.-++.+=-+|. +.
T Consensus 8 r~RFAPsPTG~LHiG~~rtAL~n~l~Ar~~--gG~fiLRieDtD~-----------------~R---------------- 52 (498)
T 2ja2_A 8 RVRFCPSPTGTPHVGLVRTALFNWAYARHT--GGTFVFRIEDTDA-----------------QR---------------- 52 (498)
T ss_dssp EEEECCCSSSSCBHHHHHHHHHHHHHHHHH--TCEEEECBCCCCT-----------------TT----------------
T ss_pred eEEECcCCCCCccHHHHHHHHHHHHHHHHc--CCEEEEEECcCCC-----------------cc----------------
Confidence 444569999999999999999999999954 7766665533331 00
Q ss_pred HHHHHHHHHHHHHHHhccccccCC---------ceeccChhhHHHHHHHHHHHHHCCCeee
Q psy1869 123 IVMRYSSEWEKVVKRIGRWIDFDN---------DYKTLYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 123 ~~~~~~~~~~~~l~~lg~~i~~d~---------~~~T~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
-...+.+.|.++|++|| ++||. .+.. +.+.....+++++|+++|++|.
T Consensus 53 ~~~~~~~~I~~~L~wlG--l~wDegp~~gG~~~~~~Q--S~r~~~y~~~~~~L~~~g~aY~ 109 (498)
T 2ja2_A 53 DSEESYLALLDALRWLG--LDWDEGPEVGGPYGPYRQ--SQRAEIYRDVLARLLAAGEAYH 109 (498)
T ss_dssp CCHHHHHHHHHHHHHHT--CCCSBBTTTBCTTCCCBG--GGCHHHHHHHHHHHHHTTSEEE
T ss_pred cChHHHHHHHHHHHHcC--CCcCCCcCcCCCCCCeee--ecCHHHHHHHHHHHHHcCCeEE
Confidence 01125678999999999 99997 4443 2456778888999999999994
No 37
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.0016 Score=56.59 Aligned_cols=82 Identities=20% Similarity=0.297 Sum_probs=49.3
Q ss_pred CCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccccCCCCHHHHHHHHHHhCC-CCChhhhhcCHHH
Q psy1869 37 GKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGI-KGPADVAKMGIAQ 115 (205)
Q Consensus 37 ~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G~d~~G~~i~~~a~~~~g~-~~~~~~~~~~~~~ 115 (205)
+++++.++.++ -|||.|||||.++++. +.++++ .|+++++..|= .|+. .+. ..+.
T Consensus 36 ~~~p~~vy~G~-~PTG~LHlG~~~~al~---~~~~~q-~g~~~ii~I~D-~ha~---------t~~~~~~~--------- 91 (394)
T 2dlc_X 36 QKRHLKLYWGT-APTGRPHCGYFVPMTK---LADFLK-AGCEVTVLLAD-LHAF---------LDNMKAPL--------- 91 (394)
T ss_dssp SCSCCEEEEEE-CCCSCCBGGGHHHHHH---HHHHHH-TTCEEEEEECH-HHHH---------HTTTSSCT---------
T ss_pred cCCCeEEEEEe-CCCCCccHHHHHHHHH---HHHHHH-cCCcEEEEEcC-Cccc---------cCCCCCcH---------
Confidence 35566676665 4589999999877654 344444 78888777551 1110 110 0110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCC
Q psy1869 116 YNLECRKIVMRYSSEWEKVVKRIGRWIDFDN 146 (205)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~lg~~i~~d~ 146 (205)
+..+..+..+...+...|.++| +|++.
T Consensus 92 --e~~~~~~~~~~~~i~~~l~a~G--ldp~k 118 (394)
T 2dlc_X 92 --EVVNYRAKYYELTIKAILRSIN--VPIEK 118 (394)
T ss_dssp --THHHHHHHHHHHHHHHHHHHTT--CCCTT
T ss_pred --HHHHHHHHHHHHHHHHHHHHcC--CChhH
Confidence 1234444456667777888999 88886
No 38
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=96.03 E-value=0.025 Score=47.68 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=27.4
Q ss_pred CCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 38 KPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 38 ~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
++++.++.|. -|||.|||||+ ..+. .+ +.++..|+++++..|
T Consensus 30 ~~~~~vy~G~-~PTg~lHlG~l-~~l~--~~-~~lq~~g~~~~~~i~ 71 (323)
T 2cyb_A 30 KEKPRAYVGY-EPSGEIHLGHM-MTVQ--KL-MDLQEAGFEIIVLLA 71 (323)
T ss_dssp CSCCEEEEEE-CCCSCCBHHHH-HHHH--HH-HHHHHTTCEEEEEEC
T ss_pred CCCCEEEECc-CCCCcchHHHH-HHHH--HH-HHHHHCCCcEEEEEC
Confidence 3456677666 58899999996 3332 33 344456888877754
No 39
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=95.44 E-value=0.027 Score=48.41 Aligned_cols=41 Identities=22% Similarity=0.385 Sum_probs=29.1
Q ss_pred CCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 39 PRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 39 ~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
++..++.|+- |||.|||||..+++. +.++++ .|+++++..|
T Consensus 34 ~~~~vy~G~~-PTG~lHlG~~~~~l~---~~~~~q-~g~~~i~~I~ 74 (372)
T 1n3l_A 34 RELKIYWGTA-TTGKPHVAYFVPMSK---IADFLK-AGCEVTILFA 74 (372)
T ss_dssp SCCEEEEEEC-CSSCCBGGGHHHHHH---HHHHHH-TTCEEEEEEC
T ss_pred CCCEEEeCcC-CCCcccHHHHHHHHH---HHHHHH-CCCCEEEEEc
Confidence 3456666665 889999999877655 444444 7888877755
No 40
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=94.51 E-value=0.018 Score=49.60 Aligned_cols=43 Identities=28% Similarity=0.399 Sum_probs=31.2
Q ss_pred CCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCcccccc
Q psy1869 36 KGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRF 83 (205)
Q Consensus 36 ~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~ 83 (205)
.++++|.|++|. -|||.|||||..++. -.+.+...|++|.+..
T Consensus 66 e~gk~~~v~sG~-~PTG~lHLGhyv~~~----~~~~lq~~~~~~~~~I 108 (372)
T 3a04_A 66 ARGERVAVLTGF-MPSGKFHFGHKLTVD----QLIYLQKNGFKVFVAI 108 (372)
T ss_dssp HTTCCCEEEEEE-CCCSCCBHHHHHHHH----HHHHHHHTTCEEEEEE
T ss_pred HcCCCCEEEeCc-CCCcHhHHHHHHHHH----HHHHHHhCCCeEEEEE
Confidence 456778888775 578999999987532 3556666799987654
No 41
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=92.62 E-value=0.073 Score=45.61 Aligned_cols=41 Identities=20% Similarity=0.159 Sum_probs=27.1
Q ss_pred CCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 39 PRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 39 ~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
+++.++.|+ -|||.||||| ...+. ..+.++..|++|++..|
T Consensus 34 ~~~~iy~G~-~PTg~lHlG~-l~~l~---~~~~lQ~~G~~~~~~ia 74 (364)
T 2cya_A 34 ARIKGYIGY-EPSGVAHIGW-LVWMY---KVKDLVEAGVDFSVLEA 74 (364)
T ss_dssp SCCEEEEEE-CCCSSCBTHH-HHHHH---HHHHHHHTTCEEEEEEC
T ss_pred CCCEEEecc-CCCCCccHhH-HHHHH---HHHHHHHCCCCEEEEEe
Confidence 355666664 5679999999 55432 23444456999887765
No 42
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=92.13 E-value=0.05 Score=45.84 Aligned_cols=32 Identities=9% Similarity=0.048 Sum_probs=22.9
Q ss_pred CCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 49 FATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 49 ~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
-|||.|||||..+++.. +.++.+ |+++++..|
T Consensus 11 ~PTg~lHlG~~lg~l~~--~~~lQ~--g~~~~~~ia 42 (322)
T 3tzl_A 11 QPSGDLHIGNYFGAIKQ--MVDAQE--KSQMFMFIA 42 (322)
T ss_dssp CCSSCCBHHHHHHTHHH--HHHTTT--TSCCEEEEC
T ss_pred CCCccccHHHHHHHHHH--HHHHhc--CCCEEEEEe
Confidence 57789999999876543 444443 999876654
No 43
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=91.90 E-value=0.1 Score=44.42 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=26.8
Q ss_pred CCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 38 KPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 38 ~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
++++.++.|. -|||.|||||....+ -.+.++ ...|+++++..|
T Consensus 38 ~~~~~vy~G~-~PTg~lHlGhyl~~l--~~~~~l-Q~~G~~~~~~i~ 80 (348)
T 2j5b_A 38 GRIFTAYNGF-EPSGRIHIAQALITV--MNTNNM-IECGGQMIIYIA 80 (348)
T ss_dssp TCCEEEEEEE-CCCSSCBHHHHHHHH--HHHHHH-HHTTEEEEEEEC
T ss_pred CCCCEEEecc-CCCCCCchhHHHHHH--HHHHHH-HHcCCcEEEEec
Confidence 3456666665 566999999943322 233444 456999887654
No 44
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=91.86 E-value=0.089 Score=44.63 Aligned_cols=33 Identities=18% Similarity=0.101 Sum_probs=23.6
Q ss_pred CCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 49 FATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 49 ~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
-|||.|||||..+++. -.+.++..|++|.+..|
T Consensus 20 ~PTG~lHLGn~~g~l~---~~~~lQ~~G~~~~~~Ia 52 (340)
T 2g36_A 20 RPTGKLHIGHLVGALE---NWVKLQEEGNECFYFVA 52 (340)
T ss_dssp CCCSSCBHHHHHTHHH---HHHHHHHTTCEEEEEEC
T ss_pred CCCCcccHHhHHHHHH---HHHHHHHCCCCEEEEEe
Confidence 4668999999987642 33445567999887753
No 45
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=91.77 E-value=0.087 Score=45.59 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=29.8
Q ss_pred CCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHH-CCCccccccc
Q psy1869 37 GKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQ-NGFHVERRFG 84 (205)
Q Consensus 37 ~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~-~G~~V~~~~G 84 (205)
+++++.++.|.- |||.|||||..+++ +.|++.. .|+.|++..+
T Consensus 70 ~~~p~~i~sG~~-PTG~lHLGh~v~~~----~~~~lQ~~~g~~~~i~Ia 113 (392)
T 3jxe_A 70 EGRGFFLYTGRG-PSGPMHIGHIIPFF----ATKWLQEKFGVNLYIQIT 113 (392)
T ss_dssp TTCCCEEEEEEC-CSSCCBHHHHHHHH----HHHHHHHHHCCEEEEEEC
T ss_pred cCCCeEEEeccC-CCCchhHHHHHHHH----HHHHHHHhcCCceEEEec
Confidence 455677777663 66999999987654 2344544 6998887765
No 46
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=91.48 E-value=0.059 Score=45.70 Aligned_cols=33 Identities=12% Similarity=-0.079 Sum_probs=21.6
Q ss_pred CCCCcCchhHHhHhHHHHHHHHHHHHCC-Cccccccc
Q psy1869 49 FATGLPHYGHILAGAIKDVVTRYAHQNG-FHVERRFG 84 (205)
Q Consensus 49 ~p~G~LHiGH~r~~i~~DilaR~~r~~G-~~V~~~~G 84 (205)
-|||.|||||..+++. -+.++ +..| ++|++..|
T Consensus 9 ~PTg~lHlGh~~g~l~--~~~~l-Q~~G~~~~~~~Ia 42 (337)
T 2el7_A 9 QPSGEIHIGNYLGAIK--QWVAI-GEKLGRDAFFCIV 42 (337)
T ss_dssp CSCSCCBHHHHHTHHH--HHHHH-HHHHGGGEEEEEC
T ss_pred CCCCcccHHHHHHHHH--HHHHH-HhcCCCCEEEEEe
Confidence 3668999999987642 23333 3457 88876654
No 47
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=90.21 E-value=0.14 Score=42.94 Aligned_cols=42 Identities=24% Similarity=0.208 Sum_probs=26.9
Q ss_pred CCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 38 KPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 38 ~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
++++.++.|+ -|||.||||| +..+. ..+.++..|+++++..|
T Consensus 26 ~~~~~vy~G~-~PTg~lHlGh-l~~l~---~~~~lQ~~g~~~~~~i~ 67 (314)
T 2zp1_A 26 KDEKSAYIGF-EPSGKIHLGH-YLQIK---KMIDLQNAGFDIIILLA 67 (314)
T ss_dssp SSSEEEEEEE-CCCSSCBHHH-HHHHH---HHHHHHHTTEEEEEEEC
T ss_pred CCCCEEEEcc-CCCCCcchhh-HHHHH---HHHHHHHCCCCEEEEEe
Confidence 3455565554 3478999999 55443 34444556999887765
No 48
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=90.06 E-value=0.11 Score=43.78 Aligned_cols=32 Identities=6% Similarity=0.115 Sum_probs=21.4
Q ss_pred CCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 49 FATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 49 ~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
-|||.|||||..+++.. +.++ . .|+++++..|
T Consensus 9 ~PTG~lHlGn~vg~l~~--~~~l-Q-~g~~~~~~Ia 40 (328)
T 1i6k_A 9 QPSGVITIGNYIGALRQ--FVEL-Q-HEYNCYFCIV 40 (328)
T ss_dssp CCCSCCBHHHHHHTHHH--HHHH-T-TTSEEEEEEC
T ss_pred CCCCcccHHHHHHHHHH--HHHH-H-cCCcEEEEEe
Confidence 36699999999887632 2232 2 3999876654
No 49
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=89.69 E-value=0.15 Score=43.99 Aligned_cols=44 Identities=5% Similarity=-0.059 Sum_probs=28.7
Q ss_pred CCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 37 GKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 37 ~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
+++++.++.|. -|||+|||||..++ ..+.++....|..|.+..+
T Consensus 79 ~~~~~~vysG~-~PTG~lHLGh~v~~---~~~~~lQ~~~g~~v~i~I~ 122 (386)
T 3hzr_A 79 AKKPTFIFIQK-YPQKEVALEEYITL---EFARYLQDAFNIQVIIQIL 122 (386)
T ss_dssp TTCCEEEEEEE-CCCSSCBGGGHHHH---HHHHHHHHHHCCEEEEEEC
T ss_pred cCCCeEEEecc-CCCCCccHHHHHHH---HHHHHHHHhcCCeEEEEeC
Confidence 45667777765 57799999997654 3344444445777776643
No 50
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=89.52 E-value=0.2 Score=43.09 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=24.7
Q ss_pred CeEEecCCCCCCCcCchhHHhHhHHHH-HHHHHHHHCCCccccccc
Q psy1869 40 RYSFYDGPPFATGLPHYGHILAGAIKD-VVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 40 ~~~i~~~~P~p~G~LHiGH~r~~i~~D-ilaR~~r~~G~~V~~~~G 84 (205)
+..++.|. -|||.||||| .++.- .+.++ ...|++|++..|
T Consensus 56 ~~~iy~G~-~PTg~lHlG~---gvl~~~~~~~l-Q~~G~~~~~lIa 96 (373)
T 3vgj_A 56 KLICYDGF-EPSGRMHIAQ---GLLKSIIVNKL-TSNGCTFIFWIA 96 (373)
T ss_dssp SCEEEEEE-CCCSSCBHHH---HHHHHHHHHHH-HTTTCEEEEEEC
T ss_pred CceEEeCC-CCCCCceehh---hHHHHHHHHHH-HHCCCcEEEEEe
Confidence 44555554 4568999999 23332 24444 456999887754
No 51
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=88.18 E-value=0.28 Score=41.86 Aligned_cols=40 Identities=25% Similarity=0.283 Sum_probs=25.3
Q ss_pred CeEEecCCCCCCCc-CchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 40 RYSFYDGPPFATGL-PHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 40 ~~~i~~~~P~p~G~-LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
++.++.|. -|||+ ||||| ...+. .+.++ ...|+++++..|
T Consensus 46 ~~~vy~G~-~PTg~sLHLGh-l~~l~--~~~~l-Q~~G~~~~~lIa 86 (356)
T 2pid_A 46 PQTIYCGF-DPTADSLHVGH-LLALL--GLFHL-QRAGHNVIALVG 86 (356)
T ss_dssp CCEEEEEE-CCSSSSCBHHH-HHHHH--HHHHH-HHTTCEEEEEEC
T ss_pred CCEEEEee-cCCCCcccHHH-HHHHH--HHHHH-HHCCCcEEEEEc
Confidence 35555554 46697 99999 44333 24444 456999887765
No 52
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=87.32 E-value=0.34 Score=40.69 Aligned_cols=40 Identities=20% Similarity=0.178 Sum_probs=25.3
Q ss_pred CeEEecCCCCCCCc-CchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 40 RYSFYDGPPFATGL-PHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 40 ~~~i~~~~P~p~G~-LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
++.++.|. -|||+ |||||... .-.+ +.+...|+++++..|
T Consensus 33 ~~~vy~G~-~PTg~slHlGh~l~---l~~~-~~lQ~~g~~~~~~i~ 73 (322)
T 2yxn_A 33 PIALVCGF-DPTADSLHLGHLVP---LLCL-KRFQQAGHKPVALVG 73 (322)
T ss_dssp CCEEEEEE-CCSSSSCBHHHHHH---HHHH-HHHHHTTCEEEEEEC
T ss_pred CCEEEEee-cCCCCcccHHHHHH---HHHH-HHHHHcCCcEEEEEc
Confidence 34454444 46689 99999762 2233 444556999887765
No 53
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=87.06 E-value=0.43 Score=40.92 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=26.1
Q ss_pred CeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 40 RYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 40 ~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
++.++.|. -|||.|||||....+. .+.++ ...|+++++..|
T Consensus 33 ~~~vy~G~-~PTg~lHlG~yl~~l~--~~~~l-Q~~G~~~~~~ia 73 (375)
T 2cyc_A 33 PLQHYIGF-EISGYIHLGTGLMAGA--KIADF-QKAGIKTRVFLA 73 (375)
T ss_dssp CCBEEEEE-CCCSCCBHHHHHHHHH--HHHHH-HHTTCBCEEEEC
T ss_pred CcEEEeCC-CCCCCcCchHHHHHHH--HHHHH-HHCCCcEEEEec
Confidence 45555554 4668999999554332 33344 456999887765
No 54
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=86.64 E-value=0.19 Score=43.37 Aligned_cols=40 Identities=8% Similarity=0.225 Sum_probs=23.3
Q ss_pred CCeE----EecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCcccccc
Q psy1869 39 PRYS----FYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRF 83 (205)
Q Consensus 39 ~~~~----i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~ 83 (205)
++|+ |++|. -|||.|||||..+++.. +.+ +. .|++|.+..
T Consensus 30 ~p~~m~~ri~sG~-~PTG~lHLGhyvGal~~--~~~-LQ-~~~~~~~~I 73 (388)
T 3prh_A 30 DPFTMKQTIFSGI-QPSGSVTLGNYIGAMKQ--FVE-LQ-HDYNSYFCI 73 (388)
T ss_dssp -----CCEEEEEE-CCCSCCBHHHHHHTHHH--HHH-TT-TTSEEEEEE
T ss_pred CCcccCCeEEEee-CCCCcchHHHHHHHHHH--HHH-HH-ccCcEEEEE
Confidence 5665 55443 67799999998876542 122 22 388887654
No 55
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=86.58 E-value=0.21 Score=42.45 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=20.6
Q ss_pred CCCcCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 50 ATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 50 p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
|||.|||||..+++.. +.+ ++. |+++++..+
T Consensus 13 PTG~lHLGn~vg~l~~--~~~-lQ~-~~~~~~~Ia 43 (348)
T 2yy5_A 13 ASGKQHLGNYLGVMQS--LIE-LQE-QCQLFVFVA 43 (348)
T ss_dssp CCTTCBHHHHHHTGGG--HHH-HHH-HSEEEEEEC
T ss_pred CCCcccHHHHHHHHHH--HHH-HHh-CCcEEEEEc
Confidence 5699999999877632 223 333 788776643
No 56
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=86.16 E-value=0.37 Score=42.21 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=24.9
Q ss_pred CeEEecCCCCCCCc-CchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 40 RYSFYDGPPFATGL-PHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 40 ~~~i~~~~P~p~G~-LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
++.++.|. -|||+ |||||. ..+. .+.+ +...|++++++.|
T Consensus 32 ~~~iy~G~-dPTg~sLHLGhl-v~l~--~l~~-lQ~~G~~~i~lIg 72 (432)
T 2jan_A 32 PMTVYAGF-DPTAPSLHAGHL-VPLL--TLRR-FQRAGHRPIVLAG 72 (432)
T ss_dssp CCEEEEEE-CCSSSSCBGGGH-HHHH--HHHH-HHHTTCEEEEEEC
T ss_pred CCEEEEee-CCCCCCcCHHHH-HHHH--HHHH-HHHCCCcEEEEEc
Confidence 34455443 46686 999994 3333 3444 4456999987764
No 57
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=86.03 E-value=0.31 Score=42.11 Aligned_cols=40 Identities=25% Similarity=0.264 Sum_probs=25.7
Q ss_pred CeEEecCCCCCCCc-CchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 40 RYSFYDGPPFATGL-PHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 40 ~~~i~~~~P~p~G~-LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
++.++.|. -|||+ |||||... .-.+.++. ..|++++++.|
T Consensus 64 ~~~vy~G~-dPTg~sLHlGhlv~---l~~l~~lQ-~~G~~~~~lIg 104 (392)
T 1y42_X 64 RIGAYVGI-DPTAPSLHVGHLLP---LMPLFWMY-LEGYKAFTLIG 104 (392)
T ss_dssp CCEEEEEE-CCCSSSCBGGGHHH---HHHHHHHH-HHTCEEEEEEC
T ss_pred CCEEEEee-cCCCCCccHHHHHH---HHHHHHHH-HcCCcEEEEEc
Confidence 44555544 46799 99999763 22344444 45999887765
No 58
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=85.83 E-value=0.67 Score=33.14 Aligned_cols=74 Identities=18% Similarity=0.259 Sum_probs=52.2
Q ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHH-------------HHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeee
Q psy1869 108 VAKMGIAQYNLECRKIVMRYSSEWEK-------------VVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYR 174 (205)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~ 174 (205)
+.+++.++..+.+++++++..+-..+ .|..|| |+ ..+ ...++..+.++|++-+
T Consensus 14 l~~l~d~el~~rar~LA~kIv~pv~el~~~hTTvSVERtVlr~mG--id------gvd------a~~iVd~~~e~gLLgk 79 (121)
T 3kp1_E 14 LANLSDEELQTRFWEMAEKIVDPLLDLGKKNTTPSIERSVLLRMG--FS------SLE------AKAIVDKTMDRGLMGK 79 (121)
T ss_dssp GTTCCHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHTT--CC------HHH------HHHHHHHHHHTTCGGG
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHhC--CC------ccc------hHHHHHHHHHcccccc
Confidence 45677777777777776665543332 366777 53 111 1248889999999999
Q ss_pred cCccccccCCCCCccCccccc
Q psy1869 175 GVKVMPYSTACNTPLSNFESG 195 (205)
Q Consensus 175 ~~~~v~~~~~~~~~ls~~ev~ 195 (205)
+-+.+.|...+++.+|..|+.
T Consensus 80 GAa~~v~~a~~e~g~s~qeaa 100 (121)
T 3kp1_E 80 GAGHIVYKIAKEKNISVREAG 100 (121)
T ss_dssp CHHHHHHHHHHHTTCCHHHHH
T ss_pred cHHHHHHHHHHHcCCCHHHHH
Confidence 999888888888888887763
No 59
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=85.40 E-value=0.49 Score=41.24 Aligned_cols=40 Identities=25% Similarity=0.319 Sum_probs=25.7
Q ss_pred CeEEecCCCCCCCc-CchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 40 RYSFYDGPPFATGL-PHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 40 ~~~i~~~~P~p~G~-LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
++.++.|. -|||+ |||||... .-.+ |.+...|+++++..|
T Consensus 32 ~~~iy~G~-dPTg~sLHlGh~v~---l~~~-~~lQ~~G~~~~~lIg 72 (420)
T 1jil_A 32 QVTLYCGA-DPTADSLHIGHLLP---FLTL-RRFQEHGHRPIVLIG 72 (420)
T ss_dssp CCEEEEEE-CCSSSSCBHHHHHH---HHHH-HHHHHTTCEEEEEEC
T ss_pred CCEEEEee-CCCCCCccHHHHHH---HHHH-HHHHHCCCcEEEEEc
Confidence 44555544 46688 99999752 2234 444457999988765
No 60
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=85.24 E-value=0.26 Score=41.95 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=23.2
Q ss_pred CeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 40 RYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 40 ~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
++.++.|. -|||.|||||..+++. -+.++ +. .++|++..|
T Consensus 22 ~~~vysG~-~PTG~lHLGn~~g~l~--~~~~l-Q~-~~~~~~~Ia 61 (351)
T 1yi8_B 22 RPRVLTGD-RPTGALHLGHLAGSLQ--NRVRL-QD-EAELFVLLA 61 (351)
T ss_dssp CSEEEEEE-CCSSCCBHHHHHHTHH--HHHHH-TS-SSEEEEEEC
T ss_pred CcEEEEee-CCCCCccHHHHHHHHH--HHHHH-HH-hCCeEEEEe
Confidence 45555553 3479999999987642 12222 22 377765543
No 61
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=85.10 E-value=0.41 Score=41.86 Aligned_cols=43 Identities=12% Similarity=0.153 Sum_probs=28.6
Q ss_pred CCCeEEecCCCCCC-CcCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 38 KPRYSFYDGPPFAT-GLPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 38 ~~~~~i~~~~P~p~-G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
++++.++.|. -|| |.|||||...++. +.++....|+.|++..|
T Consensus 100 g~~~~vy~G~-dPTag~LHLGh~v~~~~---l~~lQ~~~g~~~i~lI~ 143 (432)
T 2ip1_A 100 GKPFFLYTGR-GPSSDSMHLGHMIPFVF---TKWLQEVFDVPLVIELT 143 (432)
T ss_dssp TCCCEEEEEE-CCCSSCCBGGGHHHHHH---HHHHHHHHTCCEEEEEC
T ss_pred CCCeEEEEee-cCCCCCccHHHHHHHHH---HHHHHHHcCCeEEEEEe
Confidence 4567777666 355 8899999876442 33433337998877766
No 62
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=85.04 E-value=0.27 Score=41.73 Aligned_cols=31 Identities=10% Similarity=0.100 Sum_probs=20.2
Q ss_pred CCCCcCchhHHhHhHHHHHHHHHHHHCCCcccccc
Q psy1869 49 FATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRF 83 (205)
Q Consensus 49 ~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~ 83 (205)
-|||.|||||..+++- -+.++.. |++|.+..
T Consensus 14 ~PTG~lHLGhy~g~l~--~~~~lQ~--~~~~~~~i 44 (341)
T 3sz3_A 14 QPSGELSIGNYLGALR--QWQQMQD--DYDCQYCV 44 (341)
T ss_dssp CSSSCCBHHHHHHTGG--GHHHHHH--HSEEEEEE
T ss_pred CCCCcccHHHHHHHHH--HHHHHHh--cCeEEEEE
Confidence 5679999999988662 2333443 57776553
No 63
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=84.70 E-value=0.49 Score=41.25 Aligned_cols=40 Identities=28% Similarity=0.279 Sum_probs=25.6
Q ss_pred CeEEecCCCCCCCc-CchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 40 RYSFYDGPPFATGL-PHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 40 ~~~i~~~~P~p~G~-LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
++.++.|. -|||+ |||||... .-.+ |.+...|+++++..|
T Consensus 30 ~~~iy~G~-dPTg~sLHlGh~v~---l~~l-~~lQ~~G~~~i~lIg 70 (419)
T 2ts1_A 30 RVTLYCGF-DPTADSLHIGHLAT---ILTM-RRFQQAGHRPIALVG 70 (419)
T ss_dssp CCEEEEEE-CCSSSSCBGGGHHH---HHHH-HHHHHTTCEEEEEEC
T ss_pred CCEEEEee-CCCCCCccHHHHHH---HHHH-HHHHHCCCcEEEEEc
Confidence 34455444 46688 99999652 2234 444557999987764
No 64
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=83.65 E-value=0.8 Score=40.10 Aligned_cols=43 Identities=16% Similarity=0.291 Sum_probs=29.4
Q ss_pred CCCCeEEecCCCCCC-CcCchhHHhHhHHHHHHHHHHHH-CCCccccccc
Q psy1869 37 GKPRYSFYDGPPFAT-GLPHYGHILAGAIKDVVTRYAHQ-NGFHVERRFG 84 (205)
Q Consensus 37 ~~~~~~i~~~~P~p~-G~LHiGH~r~~i~~DilaR~~r~-~G~~V~~~~G 84 (205)
+++++.++.|. -|| |.|||||...++. .|+++. .|+.|++..|
T Consensus 105 ~~~~~~vy~G~-dPTag~LHLGh~v~~~~----~~~lQ~~~G~~~iilIg 149 (437)
T 1r6u_A 105 NKKPFYLYTGR-GPSSEAMHVGHLIPFIF----TKWLQDVFNVPLVIQMT 149 (437)
T ss_dssp TTCCEEEEEEE-CCCSSCCBHHHHHHHHH----HHHHHHHHTCCEEEEEC
T ss_pred cCCCcEEEEcc-cCCCCCccHHHHHHHHH----HHHHHHHhCCcEEEEEe
Confidence 45677777776 455 8899999876542 334444 7998877655
No 65
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=83.10 E-value=0.61 Score=43.24 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=26.1
Q ss_pred CCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 39 PRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 39 ~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
+++.++.|. -|||.||||| .++.-+..+.+...|++|++..|
T Consensus 39 ~~~~vy~G~-~PTg~lHLG~---~v~~~~~~~~lQ~~G~~~~~lIa 80 (690)
T 3p0j_A 39 PLIRCYDGF-EPSGRMHIAQ---GIFKAVNVNKCTAAGCEFVFWVA 80 (690)
T ss_dssp TTEEEEEEE-CCCSCCBHHH---HHHHHHHHHHHHHTTEEEEEEEC
T ss_pred CCceEEeee-cCCCcchhHh---hHHHHHHHHHHHHCCCcEEEEEe
Confidence 356666655 5678999999 23322223334456999877654
No 66
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=82.92 E-value=2.3 Score=36.67 Aligned_cols=44 Identities=11% Similarity=0.112 Sum_probs=27.5
Q ss_pred CCCCeEEecCCCCCC-CcCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 37 GKPRYSFYDGPPFAT-GLPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 37 ~~~~~~i~~~~P~p~-G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
+++++.++.|. -|| |.|||||...++ .+.++.++-|..|.+..|
T Consensus 71 ~g~~~~vy~G~-~PTa~~lHlGh~v~~~---~~~~lQ~~~~~~v~i~I~ 115 (393)
T 3hv0_A 71 KGELFYLYTGR-GPSSESLHVGHLVPFL---FTKYLQDTFKVPLVIQLT 115 (393)
T ss_dssp TTCCCEEEEEE-CCSSSSCBSTTHHHHH---HHHHHHHHHCCCEEEEEC
T ss_pred cCCCeEEEeCC-CCCCCCccHHHHHHHH---HHHHHHHhcCCCeEeecc
Confidence 35567777665 456 689999965543 345555555777666433
No 67
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=82.82 E-value=0.79 Score=40.58 Aligned_cols=43 Identities=16% Similarity=0.291 Sum_probs=29.4
Q ss_pred CCCCeEEecCCCCCC-CcCchhHHhHhHHHHHHHHHHHH-CCCccccccc
Q psy1869 37 GKPRYSFYDGPPFAT-GLPHYGHILAGAIKDVVTRYAHQ-NGFHVERRFG 84 (205)
Q Consensus 37 ~~~~~~i~~~~P~p~-G~LHiGH~r~~i~~DilaR~~r~-~G~~V~~~~G 84 (205)
+++++.++.|. -|| |.|||||..+++. .|+++. .|+.|++..|
T Consensus 152 ~~~~~~vy~G~-dPTag~LHLGh~v~~~~----~~~lQ~~~g~~~iilI~ 196 (477)
T 1r6t_A 152 NKKPFYLYTGR-GPSSEAMHVGHLIPFIF----TKWLQDVFNVPLVIQMT 196 (477)
T ss_dssp TTCCEEEEEEE-CCCTTCCBGGGHHHHHH----HHHHHHHHTCCEEEEEC
T ss_pred cCCCcEEEEcc-cCCCCCccHHHHHHHHH----HHHHHHHhCCcEEEEEe
Confidence 35567777776 355 8899999877542 334544 7998876655
No 68
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=82.63 E-value=0.65 Score=40.30 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=28.2
Q ss_pred CCCCeEEecCCCCCCC-cCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 37 GKPRYSFYDGPPFATG-LPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 37 ~~~~~~i~~~~P~p~G-~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
+++++.++.|. -||| .|||||..++ ..+.++....|..|.+..|
T Consensus 98 ~~~p~~vy~G~-~PTg~~lHLGh~v~~---~~~~~lQ~~~g~~~~i~Ia 142 (406)
T 3tze_A 98 NNRPFYLYTGR-GPSSKTMHIGHTIPF---LLCKYMQDAFKIRLVIQIT 142 (406)
T ss_dssp TTCCEEEEEEE-CCCSSCCBGGGHHHH---HHHHHHHHHHTCCEEEEEC
T ss_pred cCCCeEEEEee-CCCCCcccHHHHHHH---HHHHHHHHhcCCcEEEEee
Confidence 45678777775 5778 7999997554 3344444444877766433
No 69
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=81.65 E-value=0.87 Score=39.35 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=28.7
Q ss_pred CCCCeEEecCCCCCCC-cCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 37 GKPRYSFYDGPPFATG-LPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 37 ~~~~~~i~~~~P~p~G-~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
+++++.++.|. -||| .|||||... ...+.++....|..|.+..|
T Consensus 75 ~~~~~~vy~G~-~PTg~~lHLGh~v~---~~~~~~lQ~~~~~~v~i~I~ 119 (395)
T 3i05_A 75 SGQPFYLYTGR-GPSSESMHMGHLIP---FMFTKWLQDSFRVPLVIQMT 119 (395)
T ss_dssp TTCCEEEEEEE-CCCSSCCBGGGSHH---HHHHHHHHHHHTCCEEEEEC
T ss_pred cCCCeEEEEee-cCCCccchHHHHHH---HHHHHHHHHhcCCcEEEEEc
Confidence 45667777776 5778 699999754 33444544545777766544
No 70
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=81.21 E-value=0.95 Score=39.56 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=26.8
Q ss_pred CCCeEEecCCCCCCCc-CchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 38 KPRYSFYDGPPFATGL-PHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 38 ~~~~~i~~~~P~p~G~-LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
++++.++.|+ -|||+ |||||... .-.+.++ ...|++|++..|
T Consensus 35 ~~~~~vy~G~-dPTg~sLHlGh~v~---l~~l~~l-Q~~G~~~i~lIg 77 (432)
T 1h3f_A 35 GRPLTVKLGA-DPTRPDLHLGHAVV---LRKMRQF-QELGHKVVLIIG 77 (432)
T ss_dssp CSCCEEEEEE-CTTCCSCBHHHHHH---HHHHHHH-HHTTCEEEEEEC
T ss_pred CCCcEEEEcc-cCCCCCCchhhHHH---HHHHHHH-HHCCCCEEEEEc
Confidence 4455565554 46675 99999762 2334444 456999887766
No 71
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=76.80 E-value=0.88 Score=38.60 Aligned_cols=31 Identities=6% Similarity=0.068 Sum_probs=19.2
Q ss_pred CCCCcCchhHHhHhHHHHHHHHHHHHCCCcccccc
Q psy1869 49 FATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRF 83 (205)
Q Consensus 49 ~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~ 83 (205)
-|||.|||||..+++- -+.++. .++++.+..
T Consensus 23 ~PTG~lHLGh~vg~l~--~~~~lQ--~~~~~~~~i 53 (346)
T 3n9i_A 23 QPSGELTIGNYMGALR--QWVQMQ--DDYDCIYCI 53 (346)
T ss_dssp CSCSCCBHHHHHHTHH--HHHTTT--TTSEEEEEE
T ss_pred CCCCcccHHHHHHHHH--HHHHHH--hhCcEEEEE
Confidence 5669999999887652 112222 367776553
No 72
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=75.22 E-value=1.6 Score=38.32 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=28.2
Q ss_pred CCCCeEEecCCCCCC-CcCchhHHhHhHHHHHHHHHHHHCCCccccccc
Q psy1869 37 GKPRYSFYDGPPFAT-GLPHYGHILAGAIKDVVTRYAHQNGFHVERRFG 84 (205)
Q Consensus 37 ~~~~~~i~~~~P~p~-G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~G 84 (205)
+++++.+++|+ -|| |.|||||..+++ .+.++..+-|..|.+..|
T Consensus 88 ~g~p~~vytG~-dPTagsLHLGH~v~~~---~l~~lQ~~~g~~v~I~Ig 132 (451)
T 3foc_A 88 KGHPIYIYTGR-GPSSGALHLGHLLPFI---FTKYLQDAFKCYVVIQIT 132 (451)
T ss_dssp TTCCEEEEEEE-CCCSSCCBHHHHHHHH---HHHHHHHHHTCEEEEEEC
T ss_pred cCCCeEEEecC-CCCCCCccHHHHHHHH---HHHHHHHccCceEEEEee
Confidence 45678888776 455 889999975543 344444444777766533
No 73
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=73.99 E-value=12 Score=34.69 Aligned_cols=35 Identities=9% Similarity=-0.282 Sum_probs=25.6
Q ss_pred CCCcCchhHHhHhHHHHHHHHHHHH-CCCccccccccC
Q psy1869 50 ATGLPHYGHILAGAIKDVVTRYAHQ-NGFHVERRFGWD 86 (205)
Q Consensus 50 p~G~LHiGH~r~~i~~DilaR~~r~-~G~~V~~~~G~d 86 (205)
++|.|||||+-.. --++..|++. -|+.|++..|-.
T Consensus 390 s~g~lHLGh~v~~--~k~l~~~~~~~~g~~v~ilIaD~ 425 (690)
T 3p0j_A 390 ALLKVPLDVAEGM--IKVTKDFIAAHPEGTVTLVLPDW 425 (690)
T ss_dssp CCSSCBHHHHHHH--HHHHHHHHHHCSSCEEEEEECTT
T ss_pred CCCCcccchHHHH--HHHHHHHHHHcCCCeEEEEEecc
Confidence 7899999998654 3346677766 488888887633
No 74
>3aj1_A Cellulose synthase operon protein D; alpha and beta fold, octamer, tetramer of dimers, molecule R cellulose biosynthesis; 2.50A {Acetobacter xylinus} PDB: 3aj2_A 3a8e_A
Probab=53.77 E-value=28 Score=26.15 Aligned_cols=74 Identities=11% Similarity=0.032 Sum_probs=51.6
Q ss_pred CCCCCCCCchHHHHHHHHHHHhcCcchhhhhcc-CCCCCeEEecCCC-CCCCcCchhHHhHhHHHHHHHHHHHHCC
Q psy1869 3 QPVPEYIDFAKEEENILRFWKEHEIFQECLKQS-KGKPRYSFYDGPP-FATGLPHYGHILAGAIKDVVTRYAHQNG 76 (205)
Q Consensus 3 ~~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~-~~~~~~~i~~~~P-~p~G~LHiGH~r~~i~~DilaR~~r~~G 76 (205)
.++|+.-+..++|..+++.|...+==-...+.. ....-.+...+.| -.....+=+.+..+++.=++.++++.+|
T Consensus 56 ~PLp~~~Tl~dLE~~iN~vla~~~WG~V~Lel~~~~~~L~I~H~alP~~~a~g~~~~~w~~A~LEGlY~~Wl~sQG 131 (167)
T 3aj1_A 56 IMPPPCQTVDKLQIELNALLALIGWGTVTLELLSEDQSLRIVHENLPQVGSAGEPSGTWLAPVLEGLYGRWVTSQA 131 (167)
T ss_dssp BCCCCCSSHHHHHHHHHHHHHHHTCCEEEEEECTTTSEEEEEEECCCCCSSCTTTTTCTTHHHHHHHHHHHHHTST
T ss_pred CCCCCCCcHHHHHHHHHHHHhhCCCceEEeecccccCeeEEEecCCCCCccccchHHHHHHHHHHHHHHHHHHHcC
Confidence 457788899999999999999887411111211 2223355566666 3344456778889999999999998865
No 75
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1
Probab=47.57 E-value=7.2 Score=32.46 Aligned_cols=78 Identities=14% Similarity=0.085 Sum_probs=42.1
Q ss_pred CCCCCCCCCchHHHHHHHHHHHhcCcchhhhhccCCCCCeEEecCCCC--C--CCcCchhHHhHhHHHHHHHHHHHHCCC
Q psy1869 2 VQPVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPF--A--TGLPHYGHILAGAIKDVVTRYAHQNGF 77 (205)
Q Consensus 2 ~~~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~~~P~--p--~G~LHiGH~r~~i~~DilaR~~r~~G~ 77 (205)
|.++|+--++.+|...+....... .-.+++.++|+.||-. . +..=-|++..+.-.|=.+|+++..+|+
T Consensus 9 f~~~p~p~~~~~i~~~i~~~~~~~--------~l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga 80 (313)
T 1p9o_A 9 VAEFPQPPGAARWAEVMARFAARL--------GAQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGY 80 (313)
T ss_dssp -----------CHHHHHHHHHHHH--------HHTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTC
T ss_pred HhcCCCcccHHHHHHHHHHHhhhh--------hhcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCC
Confidence 334454455666667776655421 1133333666666641 1 233345565556677888999999999
Q ss_pred ccccccccCC
Q psy1869 78 HVERRFGWDC 87 (205)
Q Consensus 78 ~V~~~~G~d~ 87 (205)
.|+++.|-..
T Consensus 81 ~V~lv~g~~s 90 (313)
T 1p9o_A 81 GVLFLYRARS 90 (313)
T ss_dssp EEEEEEETTS
T ss_pred EEEEEecCCC
Confidence 9999987443
No 76
>2z9e_A Cellulose synthase operon protein D; alpha and beta fold, octamer, tetramer of dimers, molecule ring, cellulose biosynthesis; 2.50A {Acetobacter xylinus} PDB: 3aj1_A 3aj2_A 3a8e_A 2z9f_A
Probab=41.31 E-value=57 Score=24.46 Aligned_cols=74 Identities=15% Similarity=0.091 Sum_probs=50.1
Q ss_pred CCCCCCCCchHHHHHHHHHHHhcCcchhhhh-ccCCCCCeEEecCCCC--CCCcCchhHHhHhHHHHHHHHHHHHCCC
Q psy1869 3 QPVPEYIDFAKEEENILRFWKEHEIFQECLK-QSKGKPRYSFYDGPPF--ATGLPHYGHILAGAIKDVVTRYAHQNGF 77 (205)
Q Consensus 3 ~~~~~~~~~~~~e~~~~~~w~~~~~~~~~~~-~~~~~~~~~i~~~~P~--p~G~LHiGH~r~~i~~DilaR~~r~~G~ 77 (205)
.++|+.-++.++|..+++.|..-+==-...+ ...+..-.+...+.|- ..|.. -+++..+++.=++.++++.+|=
T Consensus 56 ~PLp~~~TlaeLE~~iNavla~~~WG~V~Le~~~~~~~L~I~H~a~P~~~a~ge~-~~~W~aAfLEGlY~~Wl~~QGG 132 (167)
T 2z9e_A 56 IMPPPCQTVDKLQIELNALLALIGWGTVTLELLSEDQSLRIVHENLPQVGSAGEP-SGTWLAPVLEGLYGRWVTSQAG 132 (167)
T ss_dssp BCCCCCSSHHHHHHHHHHHHHHHTCCEEEEEECTTTSEEEEEEECCCCCSSCTTT-TTCTTHHHHHHHHHHHHHTTTT
T ss_pred CCCCCCCcHHHHHHHHHHHHHhCCCceEEEeecCCCCeEEEEeccCCCccccCcc-ccchhHHHHHHHHHHHHHHcCC
Confidence 4577888999999999999998874111221 0122334555556664 34433 3467889999999999999765
No 77
>1wj5_A Hypothetical protein (riken cDNA 0610009H20); winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.4.5.59
Probab=36.82 E-value=31 Score=24.35 Aligned_cols=27 Identities=19% Similarity=0.032 Sum_probs=21.3
Q ss_pred ChhhHHHHHHHHHHHHHCCCeeecCcc
Q psy1869 152 YPWYMESIWWVFSELWNKGLVYRGVKV 178 (205)
Q Consensus 152 ~~~~~~~v~~~~~~L~~kG~iy~~~~~ 178 (205)
+..-.....+++..|.++|++|.+.+.
T Consensus 73 Sk~i~sifKeAi~~Lqe~G~VfqK~~~ 99 (120)
T 1wj5_A 73 SGVAQRVFKNALQLLQEKGLVFQRDSG 99 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHTSEECSSCS
T ss_pred HHHHHHHHHHHHHHHHHCCEEEeccCC
Confidence 445566667899999999999999844
No 78
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=33.21 E-value=37 Score=24.89 Aligned_cols=36 Identities=19% Similarity=0.030 Sum_probs=24.4
Q ss_pred CCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCccccc
Q psy1869 37 GKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERR 82 (205)
Q Consensus 37 ~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~ 82 (205)
.++++++..+ + |..|- +-..+++.+++..|++|.+.
T Consensus 17 ~~~~vlla~~-~---gd~Hd------iG~~~va~~l~~~G~eVi~l 52 (161)
T 2yxb_A 17 RRYKVLVAKM-G---LDGHD------RGAKVVARALRDAGFEVVYT 52 (161)
T ss_dssp CSCEEEEEEE-S---SSSCC------HHHHHHHHHHHHTTCEEECC
T ss_pred CCCEEEEEeC-C---CCccH------HHHHHHHHHHHHCCCEEEEC
Confidence 3445555443 3 35554 33678889999999999976
No 79
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=31.55 E-value=52 Score=16.27 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=15.5
Q ss_pred chhHHhH-hHHHHHHHHHHH
Q psy1869 55 HYGHILA-GAIKDVVTRYAH 73 (205)
Q Consensus 55 HiGH~r~-~i~~DilaR~~r 73 (205)
|+|-++. +++.|-+.++..
T Consensus 2 ~VGKiYA~llI~d~~r~~k~ 21 (23)
T 3dvk_B 2 HMGKIYAAMMIMDYYKQSKV 21 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhc
Confidence 8899886 778998888764
No 80
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=30.68 E-value=41 Score=27.27 Aligned_cols=42 Identities=7% Similarity=-0.102 Sum_probs=34.8
Q ss_pred CCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCC-Cccc
Q psy1869 38 KPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNG-FHVE 80 (205)
Q Consensus 38 ~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G-~~V~ 80 (205)
+--.++.|+.|| +|..-+-|+|..-..|+..++|+-.| .-|.
T Consensus 139 ~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~Fvv 181 (269)
T 2px2_A 139 ISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCI 181 (269)
T ss_dssp CCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 336899999999 99999999998446699999999888 4443
No 81
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=30.10 E-value=43 Score=20.57 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHCCCee
Q psy1869 156 MESIWWVFSELWNKGLVY 173 (205)
Q Consensus 156 ~~~v~~~~~~L~~kG~iy 173 (205)
...|..++.+|.+||+|-
T Consensus 39 kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 39 KQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHCCCee
Confidence 677889999999999985
No 82
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=29.62 E-value=46 Score=21.57 Aligned_cols=30 Identities=20% Similarity=0.124 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHCCCeee-cCccccccCCC
Q psy1869 156 MESIWWVFSELWNKGLVYR-GVKVMPYSTAC 185 (205)
Q Consensus 156 ~~~v~~~~~~L~~kG~iy~-~~~~v~~~~~~ 185 (205)
...|...+.+|.+.|+|.. +..+..|...+
T Consensus 41 r~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~ 71 (81)
T 1qbj_A 41 KKEINRVLYSLAKKGKLQKEAGTPPLWKIAV 71 (81)
T ss_dssp HHHHHHHHHHHHHTTSEEEESSSSCEEEEC-
T ss_pred HHHHHHHHHHHHHCCCEEecCCCCCeeEEeC
Confidence 4578999999999999975 44555665543
No 83
>3b3d_A YTBE protein, putative morphine dehydrogenase; aldo-keto reductase, oxidoreductase; 2.30A {Bacillus subtilis}
Probab=29.49 E-value=73 Score=25.87 Aligned_cols=45 Identities=16% Similarity=0.375 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhccccccCCceecc--ChhhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTL--YPWYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~--~~~~~~~v~~~~~~L~~kG~iy 173 (205)
....+.+.|++|| +|+-.-+.-. ++.....+.+++++|.+.|+|-
T Consensus 128 ~~~~~e~SL~rL~--~dyiDL~~~H~~~~~~~~e~~~al~~l~~~Gkir 174 (314)
T 3b3d_A 128 TLAAFETSLSKLG--LDYLDLYLIHWPVEGKYKEAWRALETLYKEGRIK 174 (314)
T ss_dssp HHHHHHHHHHHHT--CSCEEEEEESSCCTTTHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhC--CCcccccccccccccchhHHHHHHHHHHHCCCEe
Confidence 3457788999999 7763222221 2233455778899999999973
No 84
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=29.28 E-value=15 Score=30.21 Aligned_cols=15 Identities=7% Similarity=0.002 Sum_probs=12.4
Q ss_pred cCccccccCCCCCcc
Q psy1869 175 GVKVMPYSTACNTPL 189 (205)
Q Consensus 175 ~~~~v~~~~~~~~~l 189 (205)
..+..||||.||+.-
T Consensus 275 ~~R~t~~CP~CQ~~~ 289 (295)
T 3vk8_A 275 NKRTTYWAPAIQKLE 289 (295)
T ss_dssp CCCEEEECTTTCBCC
T ss_pred CCCccEECCCCCCCc
Confidence 567899999999753
No 85
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=28.83 E-value=36 Score=28.09 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=24.3
Q ss_pred CCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCcccccc
Q psy1869 39 PRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRF 83 (205)
Q Consensus 39 ~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~ 83 (205)
++++|..+. || ||...++ .+++.++.+|++|.++.
T Consensus 3 ~~i~i~~GG---Tg----GHi~pal---ala~~L~~~g~~V~~vg 37 (365)
T 3s2u_A 3 GNVLIMAGG---TG----GHVFPAL---ACAREFQARGYAVHWLG 37 (365)
T ss_dssp CEEEEECCS---SH----HHHHHHH---HHHHHHHHTTCEEEEEE
T ss_pred CcEEEEcCC---CH----HHHHHHH---HHHHHHHhCCCEEEEEE
Confidence 356665553 44 8987643 46778888999999874
No 86
>2wzm_A Aldo-keto reductase; oxidoreductase; HET: NA7; 1.64A {Mycobacterium smegmatis} PDB: 2wzt_A
Probab=28.51 E-value=76 Score=25.36 Aligned_cols=45 Identities=16% Similarity=0.313 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhccccccCCceeccCh----hhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLYP----WYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~~----~~~~~v~~~~~~L~~kG~iy 173 (205)
....+.+.|++|| +|+=.-+.-..+ .-...+++.+++|.+.|+|-
T Consensus 94 v~~~~~~SL~rL~--~dyiDl~llH~p~~~~~~~~e~~~al~~l~~~Gkir 142 (283)
T 2wzm_A 94 SQAAARASLERLG--LDYVDLYLIHWPGGDTSKYVDSWGGLMKVKEDGIAR 142 (283)
T ss_dssp HHHHHHHHHHHHT--CSCEEEEEECCCTTCHHHHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhC--CCCEeEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcc
Confidence 4568889999999 765222221111 23456788999999999974
No 87
>3o0k_A Aldo/keto reductase; ssgcid, ALS collaborative crystallography; 1.80A {Brucella melitensis biovar}
Probab=27.50 E-value=91 Score=24.92 Aligned_cols=45 Identities=22% Similarity=0.441 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhccccccCCceeccCh----hhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLYP----WYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~~----~~~~~v~~~~~~L~~kG~iy 173 (205)
....+++.|++|| .|+=.-+.=..+ .-...+++.+++|.+.|+|-
T Consensus 109 i~~~~e~SL~rLg--~dyiDl~~lH~p~~~~~~~~e~~~al~~l~~~Gkir 157 (283)
T 3o0k_A 109 TLKAFDTSLKKLG--TDYVDLYLIHWPMPSKDLFMETWRAFIKLKEEGRVK 157 (283)
T ss_dssp HHHHHHHHHHHHT--SSCEEEEEECCSCSCHHHHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhC--CCceeEEEECCCCCCcccHHHHHHHHHHHHHCCCcc
Confidence 4568889999999 765222221111 23456788999999999973
No 88
>1vp5_A 2,5-diketo-D-gluconic acid reductase; TM1009, structural genomics, joint center for structural genomics, PSI, protein structure initiative; HET: NAP; 2.40A {Thermotoga maritima} SCOP: c.1.7.1
Probab=26.92 E-value=75 Score=25.69 Aligned_cols=45 Identities=22% Similarity=0.519 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhccccccCCceeccChh-hHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLYPW-YMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~~~-~~~~v~~~~~~L~~kG~iy 173 (205)
..+.+.+.|++|| +|+-.-+.=..+. -...+++.+++|.+.|+|-
T Consensus 102 v~~~~~~SL~rLg--~dyiDl~llH~p~~~~~e~~~al~~l~~~Gkir 147 (298)
T 1vp5_A 102 TKKAFEKSLKKLQ--LEYIDLYLIHQPFGDVHCAWKAMEEMYKDGLVR 147 (298)
T ss_dssp HHHHHHHHHHHHT--CSCEEEEEECSSCSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHC--CCcEEEEEecCCCCCHHHHHHHHHHHHHcCCcc
Confidence 4568889999999 7652222211111 3456788999999999974
No 89
>3f7j_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.70A {Bacillus subtilis} PDB: 3d3f_A*
Probab=26.77 E-value=77 Score=25.19 Aligned_cols=45 Identities=18% Similarity=0.404 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhccccccCCceeccC--hhhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLY--PWYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~--~~~~~~v~~~~~~L~~kG~iy 173 (205)
..+.+.+.|++|| .|+=.-+.=.. +.....+.+.+++|.+.|+|-
T Consensus 90 v~~~~~~SL~rLg--~dyiDl~~lH~p~~~~~~~~~~~l~~l~~~Gkir 136 (276)
T 3f7j_A 90 TLAAFEKSLERLQ--LDYLDLYLIHWPGKDKYKDTWRALEKLYKDGKIR 136 (276)
T ss_dssp HHHHHHHHHHHHT--CSCEEEEEESCCCSSSHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhC--CCeeEEEEEecCCCCcHHHHHHHHHHHHHcCCcc
Confidence 4568889999999 66522221111 111566788999999999974
No 90
>1ur3_M Hypothetical oxidoreductase YDHF; NADP binding, aldo-keto reductase; 2.57A {Escherichia coli} SCOP: c.1.7.1 PDB: 1og6_A*
Probab=26.73 E-value=1e+02 Score=25.03 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhccccccCCceeccCh---hhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLYP---WYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~~---~~~~~v~~~~~~L~~kG~iy 173 (205)
..+.+.+.|++|| .|+-.-+.-..+ .-...+.+.+++|.+.|+|-
T Consensus 127 i~~~~e~SL~rLg--~dyiDl~~lH~p~~~~~~~e~~~al~~l~~~Gkir 174 (319)
T 1ur3_M 127 IIKSAEQSLINLA--TDHLDLLLIHRPDPLMDADEVADAFKHLHQSGKVR 174 (319)
T ss_dssp HHHHHHHHHHHHT--CSCBSEEEECSCCTTCCHHHHHHHHHHHHHTTSBC
T ss_pred HHHHHHHHHHHhC--CCCeeEEEecCCCCCCCHHHHHHHHHHHHHCCCcc
Confidence 4568889999999 776332221111 12456888999999999874
No 91
>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR, AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans} SCOP: c.1.7.0
Probab=26.60 E-value=79 Score=26.05 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhccccccCCceeccCh---hhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLYP---WYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~~---~~~~~v~~~~~~L~~kG~iy 173 (205)
....+++.|++|| .|+-.-+.-..+ .-...+.+.+++|.+.|+|-
T Consensus 124 i~~~~e~SL~rLg--~dyiDl~~lH~p~~~~~~~e~~~al~~l~~~Gkir 171 (348)
T 3n2t_A 124 IRKEVEDSLRRLR--VETIDLEQIHWPDDKTPIDESARELQKLHQDGKIR 171 (348)
T ss_dssp HHHHHHHHHHHHT--CSSEEEEEESSCCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhC--CCcEEEEEecCCCCCCCHHHHHHHHHHHHHhCcce
Confidence 4568889999999 765222221111 22456788999999999974
No 92
>3ln3_A Dihydrodiol dehydrogenase; putative reductase, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MLY MSE NAD; 1.18A {Mus musculus} SCOP: c.1.7.1
Probab=26.19 E-value=77 Score=25.71 Aligned_cols=45 Identities=20% Similarity=0.310 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhccccccCCceeccC----------------------hhhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLY----------------------PWYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~----------------------~~~~~~v~~~~~~L~~kG~iy 173 (205)
..+.+++.|++|| .|+=.-+.-.. ..-...+++++++|.+.|+|-
T Consensus 96 v~~~~~~SL~rL~--~dyiDl~llH~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~al~~l~~~Gkir 162 (324)
T 3ln3_A 96 VXPALEXSLXXLQ--LDYVDLYIMHYPVPMXSGDNDFPVNEQGXSLLDTVDFCDTWERLEECXDAGLVX 162 (324)
T ss_dssp HHHHHHHHHHHHT--CSCEEEEEESCSCCBCCSSCSSCBCTTCCBCBCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhC--CCcceEEEEecCccccccccccccccccccccccCCHHHHHHHHHHHHhcCCee
Confidence 4568889999999 65421111110 112456788999999999973
No 93
>1us0_A Aldose reductase; oxidoreductase, NADP, IDD594; HET: NDP LDT CIT; 0.66A {Homo sapiens} SCOP: c.1.7.1 PDB: 1pwl_A* 1t41_A* 1pwm_A* 1x96_A* 1x97_A* 1x98_A* 1z89_A* 1z8a_A* 2dux_A* 2duz_A* 2dv0_A* 2fz8_A* 2fz9_A* 2fzb_A* 2fzd_A* 2hv5_A* 2hvn_A* 2hvo_A* 2i16_A* 2i17_A* ...
Probab=25.94 E-value=1e+02 Score=24.86 Aligned_cols=45 Identities=22% Similarity=0.415 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhccccccCCceeccCh----------------------hhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLYP----------------------WYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~~----------------------~~~~~v~~~~~~L~~kG~iy 173 (205)
..+.+.+.|++|| +|+=.-+.-..+ .-...+++.+++|.+.|+|-
T Consensus 89 v~~~~~~SL~rL~--~dyiDl~llH~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ale~l~~~Gkir 155 (316)
T 1us0_A 89 VKGACQKTLSDLK--LDYLDLYLIHWPTGFKPGKEFFPLDESGNVVPSDTNILDTWAAMEELVDEGLVK 155 (316)
T ss_dssp HHHHHHHHHHHHT--CSCBSEEEESSSCCBCCSSCSSCBCTTSCBCBCSCCHHHHHHHHHHHHHTTSBS
T ss_pred HHHHHHHHHHHhC--CCceeeEEEecCccccccccccccccccccccccccHHHHHHHHHHHHHCCCcc
Confidence 4568889999999 665222211110 12456888999999999873
No 94
>1pz1_A GSP69, general stress protein 69; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; HET: NAP; 2.20A {Bacillus subtilis} SCOP: c.1.7.1
Probab=25.93 E-value=1e+02 Score=25.11 Aligned_cols=45 Identities=27% Similarity=0.398 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhccccccCCceeccCh---hhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLYP---WYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~~---~~~~~v~~~~~~L~~kG~iy 173 (205)
..+.+.+.|++|| +|+=.-+.-..+ .-.+.+.+.+++|.+.|+|-
T Consensus 103 i~~~~~~SL~rLg--~dyiDl~~lH~p~~~~~~~e~~~al~~l~~~Gkir 150 (333)
T 1pz1_A 103 IVEEVENSLKRLQ--TDYIDLYQVHWPDPLVPIEETAEVMKELYDAGKIR 150 (333)
T ss_dssp HHHHHHHHHHHTT--SSCBSEEEECSCCTTSCHHHHHHHHHHHHHTTSBS
T ss_pred HHHHHHHHHHHhC--CCceeEEEecCCCCCCCHHHHHHHHHHHHHCCcCC
Confidence 4568889999999 776333322211 12456788999999999873
No 95
>1vbj_A Prostaglandin F synthase; TIM barrel, oxidoreductase; HET: NAP CIT; 2.10A {Trypanosoma brucei}
Probab=25.69 E-value=1.1e+02 Score=24.26 Aligned_cols=45 Identities=24% Similarity=0.477 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhccccccCCceeccCh--hhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLYP--WYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~~--~~~~~v~~~~~~L~~kG~iy 173 (205)
..+.+.+.|++|| +|+=.-+.=..+ .-...+++.+++|.+.|+|-
T Consensus 93 v~~~~~~SL~rL~--~dyiDl~~lH~p~~~~~~~~~~al~~l~~~Gkir 139 (281)
T 1vbj_A 93 TLSAFEKSIKKLG--LEYVDLYLIHWPGKDKFIDTWKAFEKLYADKKVR 139 (281)
T ss_dssp HHHHHHHHHHHHT--CSCBSEEEESCCCSSCHHHHHHHHHHHHHTTSBS
T ss_pred HHHHHHHHHHHhC--CCcEEEEEEcCCCCCCHHHHHHHHHHHHHCCCcc
Confidence 5568889999999 765322221111 22456788999999999873
No 96
>3cz8_A Putative sporulation-specific glycosylase YDHD; structural genomics, uncharacterized protein, protein struct initiative, PSI-2; 2.20A {Bacillus subtilis subsp}
Probab=25.64 E-value=1.9e+02 Score=23.26 Aligned_cols=45 Identities=18% Similarity=0.126 Sum_probs=28.4
Q ss_pred HHHHHHHHHHh---ccccccCCceeccChhhHHHHHHHHHHHHHCCCe
Q psy1869 128 SSEWEKVVKRI---GRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLV 172 (205)
Q Consensus 128 ~~~~~~~l~~l---g~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~i 172 (205)
++.+.+.+++. |+.|||..+..+....+..+++++=.+|.++|++
T Consensus 100 i~si~~~~~~~gfDGiDiDwE~p~~~d~~~~~~ll~eLr~~l~~~~~~ 147 (319)
T 3cz8_A 100 VNNIYDLVSTRGYGGVTIDFEQVSAADRDLFTGFLRQLRDRLQAGGYV 147 (319)
T ss_dssp HHHHHHHHHHHTCSEEEEECCSCCGGGHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHhCCCeEEEeccCCCHHHHHHHHHHHHHHHHHHhhcCcE
Confidence 33334444443 5568887765443456788888888888777764
No 97
>1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel, oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1 PDB: 1pz0_A*
Probab=25.35 E-value=1.1e+02 Score=24.62 Aligned_cols=45 Identities=13% Similarity=0.227 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhccccccCCceeccCh---hhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLYP---WYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~~---~~~~~v~~~~~~L~~kG~iy 173 (205)
..+.+.+.|++|| .|+=.-+.-..+ .-.+.+...+++|.+.|.|-
T Consensus 103 i~~~~~~SL~rL~--~dyiDl~~lH~p~~~~~~~e~~~al~~l~~~Gkir 150 (312)
T 1pyf_A 103 LKKSVDESLKRLN--TDYIDLFYIHFPDEHTPKDEAVNALNEMKKAGKIR 150 (312)
T ss_dssp HHHHHHHHHHHHT--SSCBSEEEECSCCSSSCHHHHHHHHHHHHHTTSBS
T ss_pred HHHHHHHHHHHhC--CCcEEEEEeCCCCCCCCHHHHHHHHHHHHHCCCcC
Confidence 4568889999999 776332221111 12456788999999999873
No 98
>1qwk_A Aldose reductase, aldo-keto reductase family 1 member C1, XH961; structural genomics, PSI, protein structure initiative; 1.60A {Caenorhabditis elegans} SCOP: c.1.7.1
Probab=24.82 E-value=97 Score=25.07 Aligned_cols=45 Identities=18% Similarity=0.466 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhccccccCCceeccCh------------hhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLYP------------WYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~~------------~~~~~v~~~~~~L~~kG~iy 173 (205)
....+.+.|++|| +|+=.-+.-..+ .-...+.+.+++|.+.|+|-
T Consensus 92 i~~~~~~SL~rL~--~dyiDl~~lH~p~~~~~~~~~~~~~~~~e~~~al~~l~~~Gkir 148 (317)
T 1qwk_A 92 LEGGLRESLKKLQ--LEYVDLYLAHMPAAFNDDMSEHIASPVEDVWRQFDAVYKAGLAK 148 (317)
T ss_dssp HHHHHHHHHHHHT--CSCBSEEEESCSCEECTTSCSEECCCHHHHHHHHHHHHHTTSBS
T ss_pred HHHHHHHHHHHhC--CCceeEEEEeccCccccccccccCCCHHHHHHHHHHHHHcCCee
Confidence 4567889999999 765222211111 12456788999999999973
No 99
>3b3e_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.80A {Bacillus subtilis} PDB: 3b3d_A
Probab=24.81 E-value=85 Score=25.52 Aligned_cols=45 Identities=18% Similarity=0.404 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhccccccCCceeccC--hhhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLY--PWYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~--~~~~~~v~~~~~~L~~kG~iy 173 (205)
..+.+++.|++|| .|+=.-+.=.. +.....+++.+++|.+.|+|-
T Consensus 124 i~~~~e~SL~rLg--~dyiDl~~lH~p~~~~~~e~~~al~~l~~~Gkir 170 (310)
T 3b3e_A 124 TLAAFEKSLERLQ--LDYLDLYLIHWPGKDKYKDTWRALEKLYKDGKIR 170 (310)
T ss_dssp HHHHHHHHHHHHT--CSCEEEEEESCCCSSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhC--CCeeEEEEeeCCCcccHHHHHHHHHHHHHcCCcc
Confidence 4568889999999 76522222111 111566788999999999974
No 100
>3up8_A Putative 2,5-diketo-D-gluconic acid reductase B; nysgrc, PSI-biology, structural genomics; 1.96A {Sinorhizobium meliloti}
Probab=24.31 E-value=89 Score=25.25 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhccccccCCceeccCh---hhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLYP---WYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~~---~~~~~v~~~~~~L~~kG~iy 173 (205)
..+.+++.|++|| +|+-.-+.=..+ .....+.+.+++|.+.|+|-
T Consensus 106 i~~~~e~SL~rLg--~dyiDl~llH~p~~~~~~~e~~~al~~l~~~Gkir 153 (298)
T 3up8_A 106 FIASVDESLRKLR--TDHVDLLLLHWPGSDVPMAERIGALNEVRNAGKVR 153 (298)
T ss_dssp HHHHHHHHHHHHT--SSCEEEEEESCSCCSSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhC--CCcEEEEEEccCCCCCCHHHHHHHHHHHHHcCCcc
Confidence 4568889999999 665222211111 13466788999999999973
No 101
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=24.20 E-value=49 Score=20.30 Aligned_cols=27 Identities=15% Similarity=0.016 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHCCCeeecCccccccC
Q psy1869 156 MESIWWVFSELWNKGLVYRGVKVMPYST 183 (205)
Q Consensus 156 ~~~v~~~~~~L~~kG~iy~~~~~v~~~~ 183 (205)
...+...+..|.+.|+|.. ....+|..
T Consensus 39 r~tv~~~l~~L~~~G~I~~-~~~G~y~l 65 (67)
T 2heo_A 39 KKTLNQVLYRLKKEDRVSS-PSPKYWSI 65 (67)
T ss_dssp HHHHHHHHHHHHHTTSEEE-EETTEEEE
T ss_pred HHHHHHHHHHHHHCCcEec-CCCceEee
Confidence 6789999999999999865 44466753
No 102
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A {Escherichia coli} SCOP: c.1.7.0 PDB: 4ast_A 4aub_A*
Probab=23.37 E-value=98 Score=25.32 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhccccccCCceeccCh---hhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLYP---WYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~~---~~~~~v~~~~~~L~~kG~iy 173 (205)
....+.+.|++|| .|+-.-+.-..+ .-...+.+.+++|.+.|+|-
T Consensus 116 i~~~~e~SL~rL~--~dyiDl~~lH~p~~~~~~~e~~~al~~l~~~Gkir 163 (346)
T 3n6q_A 116 LLASLDQSLKRMG--LEYVDIFYSHRVDENTPMEETASALAHAVQSGKAL 163 (346)
T ss_dssp HHHHHHHHHHHHT--CSCEEEEEECSCCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhC--CCcEeEEEEeCCCCCCCHHHHHHHHHHHHHcCCee
Confidence 4568889999999 765322221111 12456788999999999973
No 103
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=23.00 E-value=94 Score=21.73 Aligned_cols=21 Identities=14% Similarity=0.294 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHCCCeeecC
Q psy1869 156 MESIWWVFSELWNKGLVYRGV 176 (205)
Q Consensus 156 ~~~v~~~~~~L~~kG~iy~~~ 176 (205)
...+..++.+|.++|+|.+..
T Consensus 77 ~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 77 KVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp HHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHHHHHHCCCEeeec
Confidence 456777888899999987643
No 104
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F, structural GE oxidoreductase; HET: NDP; 1.60A {Escherichia coli} SCOP: c.1.7.1
Probab=22.97 E-value=96 Score=25.23 Aligned_cols=45 Identities=13% Similarity=0.133 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhccccccCCceecc-----------------Ch---hhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTL-----------------YP---WYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~-----------------~~---~~~~~v~~~~~~L~~kG~iy 173 (205)
....+.+.|++|| +|+=.-+.-. ++ .-.+.+.+.+++|.+.|+|-
T Consensus 110 i~~~~~~SL~rL~--~dyiDl~~lH~p~~~~~~~~~~~~~~~d~~~~~~~~e~~~al~~l~~~Gkir 174 (346)
T 1lqa_A 110 IREALHDSLKRLQ--TDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIR 174 (346)
T ss_dssp HHHHHHHHHHHHT--SSCEEEEEECSCSSCCSCTTCCSCCCCSSCCSSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhC--CCceeEEEecCccccccccccccccccccccCCCHHHHHHHHHHHHHcCCeE
Confidence 4567889999999 6651111111 11 22456888999999999974
No 105
>3o3r_A Aldo-keto reductase family 1, member B7; aldose reductase like protein, AKR1B14, oxidoreductase; HET: NAP; 1.86A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 3qkz_A*
Probab=22.92 E-value=97 Score=25.01 Aligned_cols=45 Identities=20% Similarity=0.310 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhccccccCCceecc----------------------ChhhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTL----------------------YPWYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~----------------------~~~~~~~v~~~~~~L~~kG~iy 173 (205)
....+.+.|++|| +|+=.-+.=. ...-...+++.+++|.+.|+|-
T Consensus 89 i~~~~~~SL~rL~--~dyiDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~al~~l~~~Gkir 155 (316)
T 3o3r_A 89 MKEAFQKTLSDLK--LDYLDLYLIHWPQGLQAGKEFLPKDSQGKVLMSKSTFLDAWEGMEELVDQGLVK 155 (316)
T ss_dssp HHHHHHHHHHHHT--CSCEEEEEESCSSCBCCSSCSSCBCTTSCBCBCSCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcC--CCeeeEEEEcCCccccCcccccccccccccccccccHHHHHHHHHHHHHcCCCc
Confidence 4568889999999 6542111111 1122456788999999999983
No 106
>3v0s_A Perakine reductase; AKR superfamily, oxidoreductase; HET: MLZ M3L MLY ATR; 1.77A {Rauvolfia serpentina} PDB: 3v0u_A 3v0t_A* 3uyi_A*
Probab=22.78 E-value=1e+02 Score=25.15 Aligned_cols=45 Identities=18% Similarity=0.174 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhccccccCCceeccC---hhhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLY---PWYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~---~~~~~~v~~~~~~L~~kG~iy 173 (205)
....+.+.|++|| .|+-.-+.-.. ..-.+.+.+.+++|.+.|+|-
T Consensus 104 i~~~~~~SL~rLg--~dyiDl~~lH~p~~~~~~~e~~~al~~l~~~Gkir 151 (337)
T 3v0s_A 104 VRSCCEASLKRLD--VDYIDLFYIHRIDTTVPIEITMGELXXLVEEGKIX 151 (337)
T ss_dssp HHHHHHHHHHHHT--CSCEEEEEESSCCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhC--CCCeeEEEecCCCCCCCHHHHHHHHHHHHHCCCee
Confidence 4567888999999 66522222111 112456788999999999974
No 107
>1gve_A Aflatoxin B1 aldehyde reductase member 3; oxidoreductase, aldo-keto reductase, succinic semialdehyde oxidoreductase, AKR7 family; HET: NAP CIT; 1.38A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2clp_A* 2c91_A*
Probab=22.66 E-value=1e+02 Score=24.99 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhccccccCCceeccCh---hhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLYP---WYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~~---~~~~~v~~~~~~L~~kG~iy 173 (205)
....+.+.|++|| +|+-.-+.=..+ .-...+.+.+++|.+.|.|-
T Consensus 87 i~~~~~~SL~rL~--~dyiDl~~lH~p~~~~~~~e~~~al~~l~~~Gkir 134 (327)
T 1gve_A 87 VRFQLETSLKRLQ--CPRVDLFYLHFPDHGTPIEETLQACHQLHQEGKFV 134 (327)
T ss_dssp HHHHHHHHHHHTT--CSCEEEEEECSCCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHC--CCeEeEEEecCCCCCCCHHHHHHHHHHHHhCCcee
Confidence 4568899999999 765222211111 12456778999999999974
No 108
>4f40_A Prostaglandin F2-alpha synthase/D-arabinose dehyd; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CIT; 1.60A {Leishmania major} PDB: 4g5d_A*
Probab=22.56 E-value=1.1e+02 Score=24.27 Aligned_cols=45 Identities=20% Similarity=0.435 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhccccccCCceeccCh----------hhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLYP----------WYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~~----------~~~~~v~~~~~~L~~kG~iy 173 (205)
....+++.|++|| .|+=.-+.=..+ .....+++.+++|.+.|+|-
T Consensus 94 i~~~~~~SL~rLg--~dyiDl~llH~p~~~~~~~~~~~~~~e~~~al~~l~~~Gkir 148 (288)
T 4f40_A 94 TLAAFEESRQKLG--VDYIDLYLIHWPRGKDILSKEGKKYLDSWRAFEQLYKEKKVR 148 (288)
T ss_dssp HHHHHHHHHHHHT--CSCEEEEEECCCCCHHHHHHHCCHHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhC--CCcEEEEEEecCCCCcccccccccHHHHHHHHHHHHHcCCcc
Confidence 4567889999999 765222221111 12345778999999999974
No 109
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=22.41 E-value=32 Score=27.57 Aligned_cols=13 Identities=8% Similarity=0.399 Sum_probs=10.1
Q ss_pred cCccccccCCCCC
Q psy1869 175 GVKVMPYSTACNT 187 (205)
Q Consensus 175 ~~~~v~~~~~~~~ 187 (205)
+.+..+|||.||+
T Consensus 250 ~gR~t~~CP~CQ~ 262 (262)
T 1k3x_A 250 SSRPFYWCPGCQH 262 (262)
T ss_dssp TTEEEEECTTTCC
T ss_pred CCCCeEECCCCCC
Confidence 3577889999984
No 110
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=22.29 E-value=62 Score=26.40 Aligned_cols=45 Identities=2% Similarity=-0.188 Sum_probs=37.5
Q ss_pred CCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHC--CCccccc
Q psy1869 37 GKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQN--GFHVERR 82 (205)
Q Consensus 37 ~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~--G~~V~~~ 82 (205)
.+--+++.++.|| +|..-+-|++..-+.++..++|+-. |.-|.-+
T Consensus 155 ~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~Kv 201 (282)
T 3gcz_A 155 IPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKV 201 (282)
T ss_dssp CCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 3446999999999 9998899999866789999999988 8766543
No 111
>4fc5_A TON_0340, putative uncharacterized protein; unknown function; 2.30A {Thermococcus onnurineus}
Probab=22.26 E-value=65 Score=26.08 Aligned_cols=46 Identities=13% Similarity=-0.030 Sum_probs=30.2
Q ss_pred CCCCCeEEecCCCCCCCcCchhHHhHhHHHHHHHHHHHHCCCcccccc
Q psy1869 36 KGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRF 83 (205)
Q Consensus 36 ~~~~~~~i~~~~P~p~G~LHiGH~r~~i~~DilaR~~r~~G~~V~~~~ 83 (205)
+..++.+|++++|-|+.+ .+-.=+=+-+=.|+|.++..|.+|..+.
T Consensus 39 ~~~~~vlI~TGFpv~~~~--~~ETDGP~GA~ala~aL~~lG~~~~ivt 84 (270)
T 4fc5_A 39 DNLERVLIVTGFPIPPMM--VAETDGPPGALAIYRAVEMLGGKAEILT 84 (270)
T ss_dssp TCCTTEEEEECCCBTTTT--BCBSSSHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cCCCceEEEeCcccCCCC--CcccCCcHHHHHHHHHHHHcCCceEEEe
Confidence 445689999999976432 0111112334568999999999998774
No 112
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=22.24 E-value=71 Score=22.12 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHCCCeeecCccccccCC
Q psy1869 156 MESIWWVFSELWNKGLVYRGVKVMPYSTA 184 (205)
Q Consensus 156 ~~~v~~~~~~L~~kG~iy~~~~~v~~~~~ 184 (205)
...|.+++..|.+.|+|+...+.++|-..
T Consensus 51 r~tvr~Al~~L~~~G~i~~~~g~G~~V~~ 79 (125)
T 3neu_A 51 PNTVSRAYQELERAGYIYAKRGMGSFVTS 79 (125)
T ss_dssp HHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred HHHHHHHHHHHHHCCeEEEecCCEEEEec
Confidence 56799999999999999998887776554
No 113
>1hw6_A 2,5-diketo-D-gluconic acid reductase; aldo-keto reductase, TIM barrel, oxidoreductase; 1.90A {Corynebacterium SP} SCOP: c.1.7.1 PDB: 1a80_A* 1m9h_A*
Probab=22.21 E-value=98 Score=24.57 Aligned_cols=45 Identities=18% Similarity=0.246 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhccccccCCceeccCh----hhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLYP----WYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~~----~~~~~v~~~~~~L~~kG~iy 173 (205)
..+.+.+.|++|| .|+=.-+.-..+ .-...+++.+++|.+.|+|-
T Consensus 86 v~~~~~~SL~rLg--~dyiDl~llH~p~~~~~~~~e~~~al~~l~~~Gkir 134 (278)
T 1hw6_A 86 PAAAIAESLAKLA--LDQVDLYLVHWPTPAADNYVHAWEKMIELRAAGLTR 134 (278)
T ss_dssp HHHHHHHHHHHHT--CSCEEEEEECCCCTTCSSHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhC--CCCEEEEEEcCCCCCCCCHHHHHHHHHHHHHcCCcc
Confidence 4568889999999 765222111111 12456888999999999974
No 114
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=22.12 E-value=33 Score=27.63 Aligned_cols=47 Identities=13% Similarity=0.055 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1869 89 GLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIG 139 (205)
Q Consensus 89 G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 139 (205)
|+-....+--..|+.+.....+++.++. ..+.....+...+.++.-|
T Consensus 167 GNiYa~EiLf~a~I~P~~~a~~Ls~~~~----~~L~~~i~~vL~~ai~~gg 213 (268)
T 1k82_A 167 GNIYASESLFAAGIHPDRLASSLSLAEC----ELLARVIKAVLLRSIEQGG 213 (268)
T ss_dssp CHHHHHHHHHHHTCCTTSBGGGCCHHHH----HHHHHHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHcCCCCCCCcccCCHHHH----HHHHHHHHHHHHHHHHcCC
Confidence 5555555554557754444555666543 3333333444444444445
No 115
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=21.83 E-value=33 Score=27.66 Aligned_cols=12 Identities=8% Similarity=0.335 Sum_probs=9.9
Q ss_pred CccccccCCCCC
Q psy1869 176 VKVMPYSTACNT 187 (205)
Q Consensus 176 ~~~v~~~~~~~~ 187 (205)
.+..+|||.||+
T Consensus 259 gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 259 GRGTHFCPVCQQ 270 (271)
T ss_dssp TEEEEECTTTSC
T ss_pred CCceEECCCCCC
Confidence 477899999985
No 116
>2bp1_A Aflatoxin B1 aldehyde reductase member 2; oxidoreductase, aldo-keto reductase family 7, SSA reductase, barrel; HET: FLC NDP; 2.4A {Homo sapiens}
Probab=21.46 E-value=1.1e+02 Score=25.24 Aligned_cols=45 Identities=18% Similarity=0.131 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhccccccCCceeccCh---hhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLYP---WYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~~---~~~~~v~~~~~~L~~kG~iy 173 (205)
....+.+.|++|| +|+-.-+.=..+ .-.+.+.+.+++|.+.|+|-
T Consensus 120 i~~~~e~SL~rLg--~dyiDl~~lH~p~~~~~~~e~~~aL~~l~~~Gkir 167 (360)
T 2bp1_A 120 VRSQLETSLKRLQ--CPQVDLFYLHAPDHGTPVEETLHACQRLHQEGKFV 167 (360)
T ss_dssp HHHHHHHHHHHHT--CSCEEEEEECSCCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhC--CCeEeEEEecCCCCCCCHHHHHHHHHHHHHCCCcc
Confidence 4568899999999 765222211111 12456788999999999974
No 117
>3h7r_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.40A {Arabidopsis thaliana}
Probab=21.32 E-value=1.1e+02 Score=24.94 Aligned_cols=44 Identities=23% Similarity=0.441 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhccccccCCceeccCh-----------------hhHHHHHHHHHHHHHCCCe
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLYP-----------------WYMESIWWVFSELWNKGLV 172 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~~-----------------~~~~~v~~~~~~L~~kG~i 172 (205)
..+.+++.|++|| +|+=.-+.=..+ .-...+.+++++|.+.|+|
T Consensus 108 i~~~~e~SL~rLg--~dyiDl~llH~p~~~~~~~~~~~~~~~~~~~~~e~~~aL~~l~~~Gki 168 (331)
T 3h7r_A 108 VPKALEKTLQDLQ--IDYVDLYLIHWPASLKKESLMPTPEMLTKPDITSTWKAMEALYDSGKA 168 (331)
T ss_dssp HHHHHHHHHHHHT--CSCBSEEEECCSCEECTTCSSCCGGGEECCCHHHHHHHHHHHHHTTSB
T ss_pred HHHHHHHHHHHcC--CCeeEEEEEecCcccccccccccccccccCCHHHHHHHHHHHHHcCCC
Confidence 4568889999999 665322211111 1246788999999999997
No 118
>1zgd_A Chalcone reductase; polyketide, deoxychalcone, isoflavonoid, biosynthesis, plant protein; HET: NAP; 1.70A {Medicago sativa}
Probab=21.13 E-value=1.1e+02 Score=24.76 Aligned_cols=45 Identities=20% Similarity=0.407 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhccccccCCceeccCh-------------------hhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLYP-------------------WYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~~-------------------~~~~~v~~~~~~L~~kG~iy 173 (205)
..+.+.+.|++|| +|+=.-+.=..+ .-...+++.+++|.+.|+|-
T Consensus 98 v~~~~~~SL~rL~--~dyiDl~llH~p~~~~~~~~~~~~~~~~~~~~~~~e~~~ale~l~~~Gkir 161 (312)
T 1zgd_A 98 VIPALQKSLKTLQ--LDYLDLYLIHWPLSSQPGKFSFPIDVADLLPFDVKGVWESMEESLKLGLTK 161 (312)
T ss_dssp HHHHHHHHHHHHT--CSCBSEEEECCSCEECTTCCCSSEEGGGEECCCHHHHHHHHHHHHHTTSBS
T ss_pred HHHHHHHHHHHhC--CCceeEEEEeccCcccCccccccccccccccccHHHHHHHHHHHHHcCCCC
Confidence 4568889999999 665222111111 12456888999999999874
No 119
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=21.05 E-value=79 Score=21.38 Aligned_cols=29 Identities=7% Similarity=0.035 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHCCCeeecCccccccCC
Q psy1869 156 MESIWWVFSELWNKGLVYRGVKVMPYSTA 184 (205)
Q Consensus 156 ~~~v~~~~~~L~~kG~iy~~~~~v~~~~~ 184 (205)
...+.+++..|.+.|+|....+.++|-..
T Consensus 47 r~tvr~al~~L~~~Gli~~~~~~G~~V~~ 75 (113)
T 3tqn_A 47 PLTVSKAYQSLLDDNVIEKRRGLGMLVKA 75 (113)
T ss_dssp HHHHHHHHHHHHHTTSEEEETTTEEEECT
T ss_pred HHHHHHHHHHHHHCCCEEEecCCeEEEeC
Confidence 56789999999999999988777666443
No 120
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=20.66 E-value=1.1e+02 Score=19.59 Aligned_cols=42 Identities=14% Similarity=0.274 Sum_probs=29.9
Q ss_pred HHHHHHHHhccccccCCceeccChhhHHHHHHHHHHHHHCCCeeecC
Q psy1869 130 EWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGV 176 (205)
Q Consensus 130 ~~~~~l~~lg~~i~~d~~~~T~~~~~~~~v~~~~~~L~~kG~iy~~~ 176 (205)
..++.|+++|+-|-+... ..-.+.+..-+..|++.|+|-+.+
T Consensus 7 DVqQLLK~fG~~IY~GdR-----~~DielM~~El~~Ly~~~lId~~~ 48 (72)
T 2nn4_A 7 DVQQLLKTFGHIVYFGDR-----ELEIEFMLDELKELYMNHMIEKEQ 48 (72)
T ss_dssp HHHHHHHTTTCCCCCSCH-----HHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred HHHHHHHHCCEEEEeCCh-----HHHHHHHHHHHHHHHHcCCCCHHH
Confidence 457789999955433222 235788888999999999997654
No 121
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=20.58 E-value=37 Score=27.43 Aligned_cols=13 Identities=15% Similarity=0.368 Sum_probs=10.5
Q ss_pred cCccccccCCCCC
Q psy1869 175 GVKVMPYSTACNT 187 (205)
Q Consensus 175 ~~~~v~~~~~~~~ 187 (205)
+.+..+|||.||.
T Consensus 261 ~gR~t~~CP~CQ~ 273 (273)
T 3u6p_A 261 AGRGTHYCPRCQR 273 (273)
T ss_dssp TTEEEEECTTTCC
T ss_pred CCCCeEECCCCCC
Confidence 4578999999984
No 122
>3h7u_A Aldo-keto reductase; stress response, NADP, drought tolerance, oxidoreductase; HET: NAP; 1.25A {Arabidopsis thaliana}
Probab=20.41 E-value=1.3e+02 Score=24.68 Aligned_cols=44 Identities=16% Similarity=0.422 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhccccccCCceeccCh-----------------hhHHHHHHHHHHHHHCCCe
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLYP-----------------WYMESIWWVFSELWNKGLV 172 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~~-----------------~~~~~v~~~~~~L~~kG~i 172 (205)
....+++.|++|| +|+-..+.=..+ .-...+.+.+++|.+.|+|
T Consensus 112 v~~~~e~SL~rLg--~dyiDl~llH~p~~~~~~~~~~~~~~~~~~~~~e~~~aL~~l~~~Gki 172 (335)
T 3h7u_A 112 VPEALNRTLKDLQ--LEYVDLYLIHWPARIKKGSVGIKPENLLPVDIPSTWKAMEALYDSGKA 172 (335)
T ss_dssp HHHHHHHHHHHHT--CSCBSEEEECSSCEECSSCSSCCGGGEECCCHHHHHHHHHHHHHTTSB
T ss_pred HHHHHHHHHHHcC--CCceeEEEEcCCCccccccccccccccccCCHHHHHHHHHHHHHcCCc
Confidence 4567889999999 665222211111 1246788999999999997
No 123
>3erp_A Putative oxidoreductase; funded by the national institute of allergy and infectious D of NIH contract number HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Probab=20.37 E-value=1e+02 Score=25.41 Aligned_cols=45 Identities=13% Similarity=0.268 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhccccccCCceeccCh---hhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLYP---WYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~~---~~~~~v~~~~~~L~~kG~iy 173 (205)
....+++.|++|| +|+-.-+.-..+ .-.+.+.+++++|.+.|+|-
T Consensus 137 i~~~~e~SL~rLg--~dyiDl~~lH~p~~~~~~~e~~~aL~~l~~~Gkir 184 (353)
T 3erp_A 137 LIASLDQSLKRMG--LEYVDIFYHHRPDPETPLKETMKALDHLVRHGKAL 184 (353)
T ss_dssp HHHHHHHHHHHHT--CSCEEEEEECSCCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhC--CCeEeEEEecCCCCCCCHHHHHHHHHHHHHCCCcc
Confidence 4568889999999 665222221111 12455778999999999973
No 124
>1mzr_A 2,5-diketo-D-gluconate reductase A; alpha/beta-barrel, aldo-ketoreductase, NADPH dependant, BACT targets at IGS-CNRS, france, BIGS; 2.13A {Escherichia coli} SCOP: c.1.7.1
Probab=20.36 E-value=1.1e+02 Score=24.63 Aligned_cols=46 Identities=20% Similarity=0.251 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhccccccCCceeccC----hhhHHHHHHHHHHHHHCCCee
Q psy1869 126 RYSSEWEKVVKRIGRWIDFDNDYKTLY----PWYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 126 ~~~~~~~~~l~~lg~~i~~d~~~~T~~----~~~~~~v~~~~~~L~~kG~iy 173 (205)
...+.+.+.|++|| +|+=.-+.=.. ..-...+++.+++|.+.|.|-
T Consensus 105 ~v~~~~e~SL~rLg--~dyiDl~llH~p~~~~~~~~e~~~al~~l~~~Gkir 154 (296)
T 1mzr_A 105 RPREALLDSLKKLQ--LDYIDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIK 154 (296)
T ss_dssp CHHHHHHHHHHHHT--CSCEEEEEESCCCTTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHhC--CCcEEEEEEccCCCCcCCHHHHHHHHHHHHHCCCcC
Confidence 35578899999999 76522111111 122456888999999999974
No 125
>2bgs_A Aldose reductase; holoenzyme, aldo/keto reductase, oxidoreductase; HET: NDP; 1.64A {Hordeum vulgare} PDB: 2bgq_A* 2vdg_A*
Probab=20.17 E-value=1.2e+02 Score=25.04 Aligned_cols=45 Identities=24% Similarity=0.476 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhccccccCCceeccC------------------hhhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLY------------------PWYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~------------------~~~~~~v~~~~~~L~~kG~iy 173 (205)
..+.+.+.|++|| +|+=.-+.=.. ..-...+++.+++|.+.|+|-
T Consensus 123 v~~ale~SL~rLg--~dyIDl~llH~p~~~~~~~~~~~~~~~~~~~~~~e~~~aLe~l~~~GkIr 185 (344)
T 2bgs_A 123 VRPALENTLKDLQ--LDYIDLYHIHWPFRLKDGAHMPPEAGEVLEFDMEGVWKEMENLVKDGLVK 185 (344)
T ss_dssp HHHHHHHHHHHHT--CSCEEEEEESSSCEECTTCCSSCCTTCEECCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhC--CCcEEEEEEecCCccccccccccccccccCCCHHHHHHHHHHHHHcCCcc
Confidence 4568889999999 66511111000 012456888999999999974
No 126
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone, NADPH, cytoplasm, ION transport, ionic channel, NADP, phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A* 3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Probab=20.10 E-value=1.1e+02 Score=24.84 Aligned_cols=45 Identities=13% Similarity=0.198 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhccccccCCceeccCh---hhHHHHHHHHHHHHHCCCee
Q psy1869 127 YSSEWEKVVKRIGRWIDFDNDYKTLYP---WYMESIWWVFSELWNKGLVY 173 (205)
Q Consensus 127 ~~~~~~~~l~~lg~~i~~d~~~~T~~~---~~~~~v~~~~~~L~~kG~iy 173 (205)
....+++.|++|| .|+-.-+.-..+ .-.+.+.+.+++|.+.|+|-
T Consensus 102 i~~~~e~SL~rLg--~dyiDl~~lH~p~~~~~~~e~~~al~~l~~~Gkir 149 (327)
T 3eau_A 102 IIEGLKASLERLQ--LEYVDVVFANRPDPNTPMEETVRAMTHVINQGMAM 149 (327)
T ss_dssp HHHHHHHHHHHHT--CSCEEEEEESSCCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHhC--CCccceEEEeCCCCCCCHHHHHHHHHHHHHcCCee
Confidence 4568889999999 665222221111 12456788999999999974
No 127
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=20.03 E-value=34 Score=27.49 Aligned_cols=47 Identities=11% Similarity=-0.009 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHhCCCCChhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy1869 89 GLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIG 139 (205)
Q Consensus 89 G~~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 139 (205)
|+-....+--..|+.+.....+++.++ +..+.....+...+.++.=|
T Consensus 160 GNiYa~EiLf~a~I~P~~~~~~Ls~~~----~~~L~~~i~~vL~~ai~~gg 206 (266)
T 1ee8_A 160 GNIYADEALFRARLSPFRPARSLTEEE----ARRLYRALREVLAEAVELGG 206 (266)
T ss_dssp CHHHHHHHHHHTTCCSSSBGGGCCHHH----HHHHHHHHHHHHHHHHHTTC
T ss_pred cHhHHHHHHHHcCCCCCCCcccCCHHH----HHHHHHHHHHHHHHHHHcCC
Confidence 555555555555665444455566654 33333334444455555555
Done!