RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1869
(205 letters)
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 375 bits (965), Expect = e-127
Identities = 97/205 (47%), Positives = 131/205 (63%), Gaps = 1/205 (0%)
Query: 1 MVQPVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHIL 60
M + V E +F K EE +L FWK +IFQ+ ++ KG PRY+ Y+GPP A GLPH GH
Sbjct: 1 MFKEVGEP-NFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQ 59
Query: 61 AGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLEC 120
A + KD+ RY G++ RR GWD HGLPVE E++KKLG+K ++ GI ++N C
Sbjct: 60 ARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQAC 119
Query: 121 RKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMP 180
R+ V Y EWE +RI W+D ++ Y TL P Y+ESIWW L+++GL+YR KV+P
Sbjct: 120 RESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVP 179
Query: 181 YSTACNTPLSNFESGQNYKEVVDPA 205
Y C TPLS+ E YKE+ DP+
Sbjct: 180 YCPRCGTPLSSHEVALGYKEIQDPS 204
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 194 bits (494), Expect = 1e-57
Identities = 39/193 (20%), Positives = 76/193 (39%), Gaps = 9/193 (4%)
Query: 10 DFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVT 69
+F EE + W E +IF+ ++ + ++ P+ +G H GH I DV+
Sbjct: 5 NFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIA 64
Query: 70 RYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLE-------CRK 122
R+ G++V W G P+ ++ + + E
Sbjct: 65 RFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPIN 124
Query: 123 IVMRYSSEWEKVVKRIGRWIDFDNDYKTL--YPWYMESIWWVFSELWNKGLVYRGVKVMP 180
IV + ++ R G +D+ ++ T +P + + I W F +L KG + +G +
Sbjct: 125 IVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVR 184
Query: 181 YSTACNTPLSNFE 193
+ TPL + +
Sbjct: 185 WDPVVGTPLGDHD 197
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 180 bits (457), Expect = 6e-53
Identities = 39/193 (20%), Positives = 76/193 (39%), Gaps = 9/193 (4%)
Query: 10 DFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVT 69
+F EE + W E +IF+ ++ + ++ P+ +G H GH I DV+
Sbjct: 5 NFKAIEEKWQKRWLEAKIFEPNIRDKPKEKKFYITVAFPYLSGHLHVGHARTYTIPDVIA 64
Query: 70 RYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLE-------CRK 122
R+ G++V W G P+ ++ + + E
Sbjct: 65 RFKRMQGYNVLFPMAWHITGSPIVGIAERIKNRDPKTIWIYRDVYKVPEEILWTFEDPIN 124
Query: 123 IVMRYSSEWEKVVKRIGRWIDFDNDYKTL--YPWYMESIWWVFSELWNKGLVYRGVKVMP 180
IV + ++ R G +D+ ++ T +P + + I W F +L KG + +G +
Sbjct: 125 IVKYFMKAAKETFIRAGFSVDWSREFYTTSLFPPFSKFIEWQFWKLKEKGYIVKGAHRVR 184
Query: 181 YSTACNTPLSNFE 193
+ TPL + +
Sbjct: 185 WDPVVGTPLGDHD 197
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 126 bits (320), Expect = 4e-34
Identities = 60/201 (29%), Positives = 102/201 (50%), Gaps = 21/201 (10%)
Query: 12 AKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRY 71
+E I W + + + L+++KG + +DGPP+A G H GH L +KD + RY
Sbjct: 21 PNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRY 80
Query: 72 AHQNGFHVERRF--GWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSS 129
GF+ + GWD HGLP+E + KK G+ KM A++ +C++ ++
Sbjct: 81 KTMQGFYA--PYVPGWDTHGLPIEQALTKK-GVDR----KKMSTAEFREKCKE----FAL 129
Query: 130 EWEKV----VKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVK-VMPYSTA 184
E ++ +R+G DF++ Y TL P Y + +F E+ +KGL+Y+G K V +S +
Sbjct: 130 EQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVY-WSPS 188
Query: 185 CNTPLSNFESGQNYKEVVDPA 205
+ L+ E Y + +
Sbjct: 189 SESSLAEAEI--EYHDKRSAS 207
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 57.2 bits (139), Expect = 4e-10
Identities = 46/187 (24%), Positives = 72/187 (38%), Gaps = 28/187 (14%)
Query: 10 DFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVT 69
+ E RFW+E + G+ + P+ +G H GH+ + DV+
Sbjct: 5 NPHAIEAKWQRFWEEKGFM-KAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLA 63
Query: 70 RYAHQNGFHVERRFGWDCHGLPVE-FEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYS 128
R+ G+ V GWD GLP E + + P D I Q +
Sbjct: 64 RFRRMQGYEVLHPMGWDAFGLPAENAALKFGV---HPKDWTYANIRQ---------AK-- 109
Query: 129 SEWEKVVKRIGRWIDFDNDYKTLYPWYMESIW--WVFSELWNKGLVYRGVKVMP--YSTA 184
+ ++ +G D+D + T P Y W W+F ++W KGL YR +
Sbjct: 110 ----ESLRLMGILYDWDREVTTCEPEYYR--WNQWIFLKMWEKGLAYR--AKGLVNWCPK 161
Query: 185 CNTPLSN 191
C T L+N
Sbjct: 162 CQTVLAN 168
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 52.2 bits (126), Expect = 3e-08
Identities = 44/200 (22%), Positives = 82/200 (41%), Gaps = 22/200 (11%)
Query: 10 DFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVT 69
D E W ++ GKP + + PP TG H GH L +++D +
Sbjct: 8 DPKSVEPKWAEKWAKNPFVAN---PKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALI 64
Query: 70 RYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSS 129
RY GF G D G+ + +++ L K G +++L R+ +
Sbjct: 65 RYKRMRGFEAVWLPGTDHAGIATQVVVERLL--------LKEGKTRHDLG-REKFLERVW 115
Query: 130 EWEKV--------VKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPY 181
+W++ +KR+G D+ + T+ ++ + FS +++GL YR +++ +
Sbjct: 116 QWKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNW 175
Query: 182 STACNTPLSNFESGQNYKEV 201
C T LS+ E +
Sbjct: 176 CPRCETTLSDLEV--ETEPT 193
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 51.0 bits (123), Expect = 6e-08
Identities = 45/168 (26%), Positives = 67/168 (39%), Gaps = 25/168 (14%)
Query: 10 DFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVT 69
+ E + W E F+ + + + K +Y P+ +G H GH+ I DV+
Sbjct: 26 RPEEIESKVQLHWDEKRTFE--VTEDESKEKYYCLSMLPYPSGRLHMGHVRNYTIGDVIA 83
Query: 70 RYAHQNGFHVERRFGWDCHGLPVE-FEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYS 128
RY G +V + GWD GLP E + PA IA M+
Sbjct: 84 RYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNT---APAPWTYDNIAY---------MK-- 129
Query: 129 SEWEKVVKRIGRWIDFDNDYKTLYPWYMESIW--WVFSELWNKGLVYR 174
+K +G D+ + T P Y W F+EL+ KGLVY+
Sbjct: 130 ----NQLKMLGFGYDWSRELATCTPEYYR--WEQKFFTELYKKGLVYK 171
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
{Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Length = 722
Score = 47.0 bits (112), Expect = 2e-06
Identities = 33/145 (22%), Positives = 51/145 (35%), Gaps = 24/145 (16%)
Query: 48 PFATGLPHYGHILAGAIK-DVVTRYAHQNGFHVERRF--GWDCHGLPVEFEIDKKLGIKG 104
P+A G H GH+ + D+ RY G V F G D HG P+ F K+
Sbjct: 11 PYANGPIHAGHLAGAYLPADIFVRYLRLKGEDV--VFICGTDEHGTPISFRALKE----- 63
Query: 105 PADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFS 164
R+IV + + + +R I FD +T P + + F
Sbjct: 64 ------------GRSPREIVDEFHEQIKITFQRAK--ISFDFFGRTELPIHYKLSQEFFL 109
Query: 165 ELWNKGLVYRGVKVMPYSTACNTPL 189
+ + G + + V Y L
Sbjct: 110 KAYENGHLVKKVTKQAYCEHDKMFL 134
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
synthetase, ATP-binding, ligas binding,
nucleotide-binding, protein biosynthesis; HET: CIT;
1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A
3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
1pg2_A* 1qqt_A 1mea_A 1med_A
Length = 560
Score = 44.1 bits (105), Expect = 1e-05
Identities = 31/143 (21%), Positives = 48/143 (33%), Gaps = 21/143 (14%)
Query: 48 PFATGLPHYGHILAGAIK-DVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPA 106
P+A G H GH+ I+ DV RY G V D HG P+ + A
Sbjct: 27 PYANGSIHLGHM-LEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLK----------A 75
Query: 107 DVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSEL 166
++GI +++ S E + I +DN + T + ++S L
Sbjct: 76 Q--QLGI-----TPEQMIGEMSQEHQTDFAGFN--ISYDNYHSTHSEENRQLSELIYSRL 126
Query: 167 WNKGLVYRGVKVMPYSTACNTPL 189
G + Y L
Sbjct: 127 KENGFIKNRTISQLYDPEKGMFL 149
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
PDB: 2ct8_A*
Length = 497
Score = 36.0 bits (84), Expect = 0.006
Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 27/138 (19%)
Query: 52 GLPHYGHILAGAIKDVVTRYAHQNGFHVERRF--GWDCHGLPVEFEIDKKLGIKGPADVA 109
+PH GH D + RY + V F G D HGL ++ KK A+
Sbjct: 18 DVPHLGHAYTTIAADTIARYYRLRDYDV--FFLTGTDEHGLKIQ----KK------AEEL 65
Query: 110 KMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDY--KTLYPWYMESIWWVFSELW 167
+ + + R+ WE + + +T P++++ + VF E +
Sbjct: 66 GISPKEL---VDRNAERFKKLWEF--------LKIEYTKFIRTTDPYHVKFVQKVFEECY 114
Query: 168 NKGLVYRGVKVMPYSTAC 185
+G +Y G Y C
Sbjct: 115 KRGDIYLGEYEGWYCVGC 132
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase;
2.60A {Giardia intestinalis}
Length = 311
Score = 34.4 bits (78), Expect = 0.019
Identities = 6/50 (12%), Positives = 13/50 (26%)
Query: 156 MESIWWVFSELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKEVVDPA 205
+E I + + G + N + + Y + A
Sbjct: 16 LELINYTTLLEEQREQQQEGEEEGDGMDDSLAEKLNIKLPRFYSNPKNKA 65
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure,
rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus
horikoshii} SCOP: a.97.1.2 c.26.1.1
Length = 523
Score = 30.6 bits (68), Expect = 0.36
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 19 LRFWKEHEIFQECLKQSKGKPRYSFYDG--PPFATGLPHYGHILAGAIKDVVTRYAHQNG 76
+ W ++ + +++ K +Y G P +G H G+ +V G
Sbjct: 1 MVHWADYIA-DKIIRERGEKEKYVVESGITP---SGYVHVGNFRELFTAYIVGHALRDKG 56
Query: 77 FHVERRFGWD 86
+ V WD
Sbjct: 57 YEVRHIHMWD 66
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 2.4
Identities = 44/276 (15%), Positives = 79/276 (28%), Gaps = 106/276 (38%)
Query: 10 DFAKEEENILR--FW---KEHEIF----------QECLKQSKGKPRY--SFYDGPP---- 48
F + F+ + +E + ++ L+ ++G P S +
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 49 -----FATGLPHYGHI-LA---GAIKDVVT--------------RYAHQNGF------HV 79
+ LP + ++ GA VV+ + +G
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Query: 80 ER------RFGWDCHGLPVE--F----------EIDKKLGIKG-PADVAKMGIAQYNLEC 120
ER RF LPV F I+K L + + I Y+
Sbjct: 411 ERKLKFSNRF------LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD 464
Query: 121 ------------RKIV---MRYSSEWEKVVKRIGRWI-DFDNDYKTLYPWYMESIWWVFS 164
+IV +R +WE + I DF P +
Sbjct: 465 GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG-------PGGASGL----G 513
Query: 165 ELWNKGLVYRGVKVMPYSTACNTPLSNFESGQNYKE 200
L ++ GV+V+ T P + + G +K+
Sbjct: 514 VLTHRNKDGTGVRVIVAGTLDINP--DDDYG--FKQ 545
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome;
HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T*
1e4f_T* 4a2b_A*
Length = 419
Score = 26.2 bits (58), Expect = 9.4
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 88 HGLPVEFEIDKKLGIKGP 105
H + +D + + P
Sbjct: 131 HIFSKRYLLDDERIVFNP 148
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.140 0.465
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,523,485
Number of extensions: 211978
Number of successful extensions: 426
Number of sequences better than 10.0: 1
Number of HSP's gapped: 415
Number of HSP's successfully gapped: 25
Length of query: 205
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 116
Effective length of database: 4,216,824
Effective search space: 489151584
Effective search space used: 489151584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.8 bits)