RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1869
(205 letters)
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 151 bits (381), Expect = 2e-44
Identities = 87/186 (46%), Positives = 118/186 (63%), Gaps = 1/186 (0%)
Query: 1 MVQPVPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHIL 60
M + V E +F K EE +L FWK +IFQ+ ++ KG PRY+ Y+GPP A GLPH GH
Sbjct: 1 MFKEVGEP-NFPKLEEEVLAFWKREKIFQKSVENRKGGPRYTVYEGPPTANGLPHVGHAQ 59
Query: 61 AGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLEC 120
A + KD+ RY G++ RR GWD HGLPVE E++KKLG+K ++ GI ++N C
Sbjct: 60 ARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKKLGLKSKREIEAYGIERFNQAC 119
Query: 121 RKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMP 180
R+ V Y EWE +RI W+D ++ Y TL P Y+ESIWW L+++GL+YR KV+P
Sbjct: 120 RESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVP 179
Query: 181 YSTACN 186
Y C
Sbjct: 180 YCPRCG 185
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 134 bits (337), Expect = 8e-38
Identities = 42/189 (22%), Positives = 74/189 (39%), Gaps = 18/189 (9%)
Query: 10 DFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVT 69
+ E RFW+E + G+ + P+ +G H GH+ + DV+
Sbjct: 5 NPHAIEAKWQRFWEEKGFM-KAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLA 63
Query: 70 RYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSS 129
R+ G+ V GWD GLP E K + + +
Sbjct: 64 RFRRMQGYEVLHPMGWDAFGLPAENAALK-----------------FGVHPKDWTYANIR 106
Query: 130 EWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTACNTPL 189
+ ++ ++ +G D+D + T P Y W+F ++W KGL YR ++ + C T L
Sbjct: 107 QAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVL 166
Query: 190 SNFESGQNY 198
+N + +
Sbjct: 167 ANEQVVEGR 175
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 124 bits (311), Expect = 2e-34
Identities = 56/183 (30%), Positives = 93/183 (50%), Gaps = 5/183 (2%)
Query: 6 PEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIK 65
P +E I W + + + L+++KG + +DGPP+A G H GH L +K
Sbjct: 15 PMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILK 74
Query: 66 DVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVM 125
D + RY GF+ GWD HGLP+E + KK + KM A++ +C++ +
Sbjct: 75 DFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRK-----KMSTAEFREKCKEFAL 129
Query: 126 RYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTAC 185
+K +R+G DF++ Y TL P Y + +F E+ +KGL+Y+G K + +S +
Sbjct: 130 EQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSS 189
Query: 186 NTP 188
+
Sbjct: 190 ESS 192
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 121 bits (305), Expect = 2e-33
Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 4/195 (2%)
Query: 5 VPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAI 64
+P+ D E W ++ GKP + + PP TG H GH L ++
Sbjct: 3 LPKAYDPKSVEPKWAEKWAKNPFVA---NPKSGKPPFVIFMPPPNVTGSLHMGHALDNSL 59
Query: 65 KDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIV 124
+D + RY GF G D G+ + +++ L +G +G ++ +
Sbjct: 60 QDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEG-KTRHDLGREKFLERVWQWK 118
Query: 125 MRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTA 184
K +KR+G D+ + T+ ++ + FS +++GL YR +++ +
Sbjct: 119 EESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPR 178
Query: 185 CNTPLSNFESGQNYK 199
C T LS+ E +
Sbjct: 179 CETTLSDLEVETCSR 193
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase
(MetRS) {Escherichia coli [TaxId: 562]}
Length = 350
Score = 77.3 bits (189), Expect = 1e-17
Identities = 28/153 (18%), Positives = 46/153 (30%), Gaps = 19/153 (12%)
Query: 40 RYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKK 99
+ P+A G H GH+L DV RY G V D HG P+ + +
Sbjct: 3 KILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQL 62
Query: 100 LGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESI 159
+ +++ S E + I +DN + T +
Sbjct: 63 -----------------GITPEQMIGEMSQEHQTDFAGFN--ISYDNYHSTHSEENRQLS 103
Query: 160 WWVFSELWNKGLVYRGVKVMPYSTACNTPLSNF 192
++S L G + Y L +
Sbjct: 104 ELIYSRLKENGFIKNRTISQLYDPEKGMFLPDR 136
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase
(MetRS) {Pyrococcus abyssi [TaxId: 29292]}
Length = 361
Score = 60.0 bits (144), Expect = 2e-11
Identities = 32/149 (21%), Positives = 49/149 (32%), Gaps = 20/149 (13%)
Query: 40 RYSFYDGPPFATGLPHYGHIL-AGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDK 98
RY P+A G H GH+ A D+ RY G V G D HG P+ F K
Sbjct: 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALK 62
Query: 99 KLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMES 158
+ R+IV + + + +R DF + P + +
Sbjct: 63 E-----------------GRSPREIVDEFHEQIKITFQRAKISFDFFGRTEL--PIHYKL 103
Query: 159 IWWVFSELWNKGLVYRGVKVMPYSTACNT 187
F + + G + + V Y
Sbjct: 104 SQEFFLKAYENGHLVKKVTKQAYCEHDKM 132
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS)
{Thermus thermophilus [TaxId: 274]}
Length = 348
Score = 59.7 bits (143), Expect = 2e-11
Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 19/146 (13%)
Query: 47 PPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPA 106
+ PH GH + D + R+ +G+ G D HG V
Sbjct: 11 IYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAA------- 63
Query: 107 DVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSEL 166
+ + V R S +++ +G +D+ +T + + + V ++
Sbjct: 64 ----------GEDPKAFVDRVSGRFKRAWDLLGIA--YDDFIRTTEERHKKVVQLVLKKV 111
Query: 167 WNKGLVYRGVKVMPYSTACNTPLSNF 192
+ G +Y G Y +C +
Sbjct: 112 YEAGDIYYGEYEGLYCVSCERFYTEK 137
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 42.8 bits (99), Expect = 1e-05
Identities = 19/151 (12%), Positives = 45/151 (29%), Gaps = 1/151 (0%)
Query: 26 EIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGW 85
I + +++ K +Y G +G H G+ +V G+ V W
Sbjct: 5 YIADKIIRERGEKEKYVVESGI-TPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMW 63
Query: 86 DCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFD 145
D + + + K + + + ++E+ V+++G +D
Sbjct: 64 DDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLL 123
Query: 146 NDYKTLYPWYMESIWWVFSELWNKGLVYRGV 176
+ + E +K +
Sbjct: 124 YASELYKRGEYSEEIRLAFEKRDKIMEILNK 154
>d1lwha1 b.71.1.1 (A:392-441) 4-alpha-glucanotransferase {Thermotoga
maritima [TaxId: 2336]}
Length = 50
Score = 26.5 bits (58), Expect = 0.36
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 162 VFSELWNKGLVYRGVKVMPYST 183
VF L + +V+ GVK+ PY T
Sbjct: 26 VFHNLSGEEVVFEGVKMKPYKT 47
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 370
Score = 27.6 bits (60), Expect = 1.3
Identities = 20/142 (14%), Positives = 36/142 (25%), Gaps = 13/142 (9%)
Query: 51 TGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPV-------------EFEID 97
H GH+ A+ D + R G V D G +
Sbjct: 19 NKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDGKE 78
Query: 98 KKLGIKGPADVAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYME 157
K G A V +Y I + ++ I
Sbjct: 79 KYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRILLAQMATMHALNARY 138
Query: 158 SIWWVFSELWNKGLVYRGVKVM 179
+ S++ GL+ + + ++
Sbjct: 139 DLLVWESDIVRAGLLQKALALL 160
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 348
Score = 27.2 bits (59), Expect = 1.7
Identities = 14/153 (9%), Positives = 35/153 (22%), Gaps = 3/153 (1%)
Query: 51 TGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPVE---FEIDKKLGIKGPAD 107
H GH+ + I + + G+ V R G ++ +
Sbjct: 20 AKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEEALVK 79
Query: 108 VAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELW 167
+ + K + G+ ++ + ++
Sbjct: 80 DPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSI 139
Query: 168 NKGLVYRGVKVMPYSTACNTPLSNFESGQNYKE 200
K + + Y + ES +
Sbjct: 140 EKYIDTYARLNIKYDVYSGESQVSKESMLKAID 172
>d1nbwa2 c.55.1.6 (A:2-91,A:257-405) ATPase domain of the glycerol
dehydratase reactivase alpha subunit {Klebsiella
pneumoniae [TaxId: 573]}
Length = 239
Score = 26.6 bits (59), Expect = 2.0
Identities = 6/34 (17%), Positives = 8/34 (23%), Gaps = 2/34 (5%)
Query: 88 HGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECR 121
G E D G + M + R
Sbjct: 103 SGEKRRGEADVAEGAEAIMQA--MSACAPVRDIR 134
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
{Escherichia coli [TaxId: 562]}
Length = 315
Score = 26.4 bits (57), Expect = 2.8
Identities = 10/45 (22%), Positives = 14/45 (31%)
Query: 48 PFATGLPHYGHILAGAIKDVVTRYAHQNGFHVERRFGWDCHGLPV 92
L H GH DVV RY G+ ++ +
Sbjct: 30 ITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKI 74
>d2ix0a4 b.40.4.16 (A:173-557) Exoribonuclease 2, RNB {Escherichia
coli [TaxId: 562]}
Length = 385
Score = 25.3 bits (54), Expect = 6.5
Identities = 7/38 (18%), Positives = 12/38 (31%)
Query: 22 WKEHEIFQECLKQSKGKPRYSFYDGPPFATGLPHYGHI 59
+ +++ + S GP F GL Y
Sbjct: 286 AQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATW 323
>d1yhta1 c.1.8.6 (A:16-359) Dispersin B, DspB {Actinobacillus
actinomycetemcomitans [TaxId: 714]}
Length = 344
Score = 25.2 bits (54), Expect = 6.8
Identities = 17/137 (12%), Positives = 35/137 (25%), Gaps = 18/137 (13%)
Query: 64 IKDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMG----IAQYNLE 119
+ D+ YA G + H + + K G+K + I N +
Sbjct: 82 LDDIK-AYAKAKGIELIPELDSPNHMTAIFKLVQKDRGVKYLQGLKSRQVDDEIDITNAD 140
Query: 120 CRKIVMRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSE-------------L 166
+ SE + + D ++ +
Sbjct: 141 SITFMQSLMSEVIDIFGDTSQHFHIGGDEFGYSVESNHEFITYANKLSYFLEKKGLKTRM 200
Query: 167 WNKGLVYRGVKVMPYST 183
WN GL+ + + +
Sbjct: 201 WNDGLIKNTFEQINPNI 217
>d1yq2a5 c.1.8.3 (A:313-609) beta-Galactosidase, domain 3
{Arthrobacter sp. c2-2 [TaxId: 192168]}
Length = 297
Score = 24.9 bits (53), Expect = 7.9
Identities = 20/193 (10%), Positives = 49/193 (25%), Gaps = 3/193 (1%)
Query: 6 PEYIDFAKEEENILRFWKEHE-IFQECLKQSKGKPRYSFYDGPPFATGLPHYGHILAGAI 64
E + + ++ + + +++ K P + + + + A A
Sbjct: 86 FEAGGWVENPSDVPAWRDALVDRMERTVERDKNHPSIVMWSLGNESGTGSNLAAMAAWAH 145
Query: 65 KDVVTRYAHQNGFHVERRFGWDCHGLPVEFEIDKKLGIKGPADVAKMGIAQYNLECRKIV 124
+R H G + E D A + A+ + K
Sbjct: 146 ARDSSRPVHYEGDYTGAYTDVYSRMYSSIPETDSIGRNDSHALLLGCDSAESARQRTK-- 203
Query: 125 MRYSSEWEKVVKRIGRWIDFDNDYKTLYPWYMESIWWVFSELWNKGLVYRGVKVMPYSTA 184
E+ + +D YP W + + + G++ Y
Sbjct: 204 PFILCEYVHAMGNGPGAMDQYEALVDKYPRLHGGFVWEWRDHGIRTRTAEGMEFFAYGGD 263
Query: 185 CNTPLSNFESGQN 197
+ + +
Sbjct: 264 FGEVVHDSNFVMD 276
>d2cwya1 a.246.2.1 (A:1-94) Hypothetical protein TTHA0068 {Thermus
thermophilus [TaxId: 274]}
Length = 94
Score = 23.6 bits (51), Expect = 9.3
Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 5 VPEYIDFAKEEENILRFWKEHEIFQECLKQSKGKPRYSFYDG 46
VP++ + R+++ HE+ + ++ G G
Sbjct: 2 VPDWEE-VLGLWRAGRYYEVHEVLEPYWLKATG-EERRLLQG 41
>d2ajta2 c.85.1.2 (A:1-328) L-arabinose isomerase AraA {Escherichia
coli [TaxId: 562]}
Length = 328
Score = 24.8 bits (54), Expect = 9.6
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 7/36 (19%)
Query: 108 VAKMGIAQYNLECRKIVMRYSSEWEKVVKRIGRWID 143
A+M +V + + ++ +RIG W+
Sbjct: 137 GARMRQQ------HAVVTGHWQD-KQAHERIGSWMR 165
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.140 0.465
Gapped
Lambda K H
0.267 0.0431 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 908,403
Number of extensions: 44256
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 23
Length of query: 205
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,295,466
Effective search space: 160637784
Effective search space used: 160637784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.2 bits)