BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy187
(493 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1E0T|A Chain A, R292d Mutant Of E. Coli Pyruvate Kinase
pdb|1E0T|B Chain B, R292d Mutant Of E. Coli Pyruvate Kinase
pdb|1E0T|C Chain C, R292d Mutant Of E. Coli Pyruvate Kinase
pdb|1E0T|D Chain D, R292d Mutant Of E. Coli Pyruvate Kinase
Length = 470
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 12/99 (12%)
Query: 49 HFYFTDYERHNSEIATFHLDRLLGFRRAMPVTGRLCNITSEIYPLVDGELLKTFFVSPGN 108
+F DY H R+ R M TG+ T+ I G ++T + GN
Sbjct: 34 NFSHGDYAEHGQ--------RIQNLRNVMSKTGK----TAAILLDTKGPEIRTMKLEGGN 81
Query: 109 NICFHGKCSYYCDTSHAVCGNPDMLEGSYAAFLPDKSVA 147
++ ++ T +V GN +M+ +Y F D SV
Sbjct: 82 DVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVG 120
>pdb|1PKY|A Chain A, Pyruvate Kinase From E. Coli In The T-State
pdb|1PKY|B Chain B, Pyruvate Kinase From E. Coli In The T-State
pdb|1PKY|C Chain C, Pyruvate Kinase From E. Coli In The T-State
pdb|1PKY|D Chain D, Pyruvate Kinase From E. Coli In The T-State
Length = 470
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 12/99 (12%)
Query: 49 HFYFTDYERHNSEIATFHLDRLLGFRRAMPVTGRLCNITSEIYPLVDGELLKTFFVSPGN 108
+F DY H R+ R M TG+ T+ I G ++T + GN
Sbjct: 34 NFSHGDYAEHGQ--------RIQNLRNVMSKTGK----TAAILLDTKGPEIRTMKLEGGN 81
Query: 109 NICFHGKCSYYCDTSHAVCGNPDMLEGSYAAFLPDKSVA 147
++ ++ T +V GN +M+ +Y F D SV
Sbjct: 82 DVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVG 120
>pdb|1E0U|A Chain A, Structure R271l Mutant Of E. Coli Pyruvate Kinase
pdb|1E0U|B Chain B, Structure R271l Mutant Of E. Coli Pyruvate Kinase
pdb|1E0U|C Chain C, Structure R271l Mutant Of E. Coli Pyruvate Kinase
pdb|1E0U|D Chain D, Structure R271l Mutant Of E. Coli Pyruvate Kinase
Length = 470
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 12/99 (12%)
Query: 49 HFYFTDYERHNSEIATFHLDRLLGFRRAMPVTGRLCNITSEIYPLVDGELLKTFFVSPGN 108
+F DY H R+ R M TG+ T+ I G ++T + GN
Sbjct: 34 NFSHGDYAEHGQ--------RIQNLRNVMSKTGK----TAAILLDTKGPEIRTMKLEGGN 81
Query: 109 NICFHGKCSYYCDTSHAVCGNPDMLEGSYAAFLPDKSVA 147
++ ++ T +V GN +M+ +Y F D SV
Sbjct: 82 DVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVG 120
>pdb|3GSI|A Chain A, Crystal Structure Of D552a Dimethylglycine Oxidase Mutant
Of Arthrobacter Globiformis In Complex With
Tetrahydrofolate
Length = 827
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 56 ERHNSEIATFHLDRLLGFRRAMPVTGRLCNIT--SEIYPLVDGE 97
E +E L R LG+ A + GRL + E+YPL+DGE
Sbjct: 88 EVATTETRLADLKRKLGYAAAWGIEGRLLSPAECQELYPLLDGE 131
>pdb|1PJ5|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
Arthrobacter Globiformis In Complex With Acetate
pdb|1PJ6|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of
Arthrobacter Globiformis In Complex With Folic Acid
pdb|1PJ7|A Chain A, Structure Of Dimethylglycine Oxidase Of Arthrobacter
Globiformis In Complex With Folinic Acid
Length = 830
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 56 ERHNSEIATFHLDRLLGFRRAMPVTGRLCNIT--SEIYPLVDGE 97
E +E L R LG+ A + GRL + E+YPL+DGE
Sbjct: 91 EVATTETRLADLKRKLGYAAAWGIEGRLLSPAECQELYPLLDGE 134
>pdb|3EYM|A Chain A, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
pdb|3EYM|C Chain C, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
pdb|3EYM|E Chain E, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
Length = 321
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 233 NQGRRLLDLMDMAVLDFLIGNMDRHHYETFKAFDNETFPIHLDHGRGFGRAY 284
N R+LD +D ++D L+G D H F NET+ + ++ + F Y
Sbjct: 45 NNPHRILDGIDCTLIDALLG--DPH----CDVFQNETWDLFVERSKAFSNCY 90
>pdb|3VUN|A Chain A, Crystal Structure Of A Influenza A Virus (AAICHI21968
H3N2) Hemagglutinin In C2 Space Group.
pdb|3VUN|C Chain C, Crystal Structure Of A Influenza A Virus (AAICHI21968
H3N2) Hemagglutinin In C2 Space Group.
pdb|3VUN|E Chain E, Crystal Structure Of A Influenza A Virus (AAICHI21968
H3N2) Hemagglutinin In C2 Space Group
Length = 329
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 233 NQGRRLLDLMDMAVLDFLIGNMDRHHYETFKAFDNETFPIHLDHGRGFGRAY 284
N R+LD +D ++D L+G D H F NET+ + ++ + F Y
Sbjct: 53 NNPHRILDGIDCTLIDALLG--DPH----CDVFQNETWDLFVERSKAFSNCY 98
>pdb|2HMG|A Chain A, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|2HMG|C Chain C, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|2HMG|E Chain E, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
Length = 328
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 233 NQGRRLLDLMDMAVLDFLIGNMDRHHYETFKAFDNETFPIHLDHGRGFGRAY 284
N R+LD +D ++D L+G D H F NET+ + ++ + F Y
Sbjct: 53 NNPHRILDGIDCTLIDALLG--DPH----CDVFQNETWDLFVERSKAFSNCY 98
>pdb|1HGD|A Chain A, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGD|C Chain C, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGD|E Chain E, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGE|A Chain A, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGE|C Chain C, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGE|E Chain E, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
Length = 328
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 233 NQGRRLLDLMDMAVLDFLIGNMDRHHYETFKAFDNETFPIHLDHGRGFGRAY 284
N R+LD +D ++D L+G D H F NET+ + ++ + F Y
Sbjct: 53 NNPHRILDGIDCTLIDALLG--DPH----CDVFQNETWDLFVERSKAFSNCY 98
>pdb|3HMG|A Chain A, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|3HMG|C Chain C, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|3HMG|E Chain E, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|4HMG|A Chain A, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|4HMG|C Chain C, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|4HMG|E Chain E, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
Length = 328
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 233 NQGRRLLDLMDMAVLDFLIGNMDRHHYETFKAFDNETFPIHLDHGRGFGRAY 284
N R+LD +D ++D L+G D H F NET+ + ++ + F Y
Sbjct: 53 NNPHRILDGIDCTLIDALLG--DPH----CDVFQNETWDLFVERSKAFSNCY 98
>pdb|2VIU|A Chain A, Influenza Virus Hemagglutinin
Length = 328
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 233 NQGRRLLDLMDMAVLDFLIGNMDRHHYETFKAFDNETFPIHLDHGRGFGRAY 284
N R+LD +D ++D L+G D H F NET+ + ++ + F Y
Sbjct: 53 NNPHRILDGIDCTLIDALLG--DPH----CDVFQNETWDLFVERSKAFSNCY 98
>pdb|2VIS|C Chain C, Influenza Virus Hemagglutinin, (Escape) Mutant With Thr
131 Replaced By Ile, Complexed With A Neutralizing
Antibody
Length = 282
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 233 NQGRRLLDLMDMAVLDFLIGNMDRHHYETFKAFDNETFPIHLDHGRGFGRAY 284
N R+LD +D ++D L+G D H F NET+ + ++ + F Y
Sbjct: 26 NNPHRILDGIDCTLIDALLG--DPH----CDVFQNETWDLFVERSKAFSNCY 71
>pdb|5HMG|A Chain A, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|5HMG|C Chain C, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|5HMG|E Chain E, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|1HGF|A Chain A, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGF|C Chain C, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGF|E Chain E, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGG|A Chain A, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGG|C Chain C, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGG|E Chain E, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGH|A Chain A, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGH|C Chain C, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGH|E Chain E, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGI|A Chain A, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-ray
Crystallography
pdb|1HGI|C Chain C, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-ray
Crystallography
pdb|1HGI|E Chain E, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-ray
Crystallography
pdb|1HGJ|A Chain A, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGJ|C Chain C, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGJ|E Chain E, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1QFU|A Chain A, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
pdb|1EO8|A Chain A, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
pdb|1KEN|A Chain A, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|C Chain C, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|E Chain E, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|2YPG|A Chain A, Haemagglutinin Of 1968 Human H3n2 Virus In Complex With
Human Receptor Analogue Lstc
pdb|2YPG|C Chain C, Haemagglutinin Of 1968 Human H3n2 Virus In Complex With
Human Receptor Analogue Lstc
pdb|2YPG|E Chain E, Haemagglutinin Of 1968 Human H3n2 Virus In Complex With
Human Receptor Analogue Lstc
Length = 328
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 233 NQGRRLLDLMDMAVLDFLIGNMDRHHYETFKAFDNETFPIHLDHGRGFGRAY 284
N R+LD +D ++D L+G D H F NET+ + ++ + F Y
Sbjct: 53 NNPHRILDGIDCTLIDALLG--DPH----CDVFQNETWDLFVERSKAFSNCY 98
>pdb|1LFO|A Chain A, Liver Fatty Acid Binding Protein-Oleate Complex
Length = 128
Score = 28.5 bits (62), Expect = 8.1, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 315 TYSHKVVYMDFQVGDEPQLPGV-GEHVTVMTQMESSTQEI--HKSLNTIIDY 363
TY KV++ +F +G+E +L + GE V + +ME + + K + ++ ++
Sbjct: 54 TYGSKVIHNEFTLGEEXELETMTGEKVKAVVKMEGDNKMVTTFKGIKSVTEF 105
>pdb|3SDY|A Chain A, Crystal Structure Of Broadly Neutralizing Antibody Cr8020
Bound To The Influenza A H3 Hemagglutinin
pdb|4FQY|A Chain A, Crystal Structure Of Broadly Neutralizing Antibody Cr9114
Bound To H3 Influenza Hemagglutinin
pdb|4FNK|A Chain A, Crystal Structure Of The AHONG KONG11968 (H3N2) INFLUENZA
VIRUS Hemagglutinin
pdb|4FNK|C Chain C, Crystal Structure Of The AHONG KONG11968 (H3N2) INFLUENZA
VIRUS Hemagglutinin
pdb|4FNK|E Chain E, Crystal Structure Of The AHONG KONG11968 (H3N2) INFLUENZA
VIRUS Hemagglutinin
pdb|4FQR|A Chain A, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|C Chain C, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|E Chain E, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|G Chain G, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|I Chain I, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|K Chain K, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|M Chain M, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|O Chain O, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|Q Chain Q, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|S Chain S, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|U Chain U, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|W Chain W, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
Length = 323
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 233 NQGRRLLDLMDMAVLDFLIGNMDRHHYETFKAFDNETFPIHLDHGRGFGRAY 284
N R+LD +D ++D L+G D H F NET+ + ++ + F Y
Sbjct: 47 NNPHRILDGIDCTLIDALLG--DPH----CDVFQNETWDLFVERSKAFSNCY 92
>pdb|3ZTJ|A Chain A, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin.
pdb|3ZTJ|C Chain C, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin.
pdb|3ZTJ|E Chain E, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin
Length = 329
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 233 NQGRRLLDLMDMAVLDFLIGNMDRHHYETFKAFDNETFPIHLDHGRGFGRAY 284
N R+LD +D ++D L+G D H F NET+ + ++ + F Y
Sbjct: 53 NNPHRILDGIDCTLIDALLG--DPH----CDVFQNETWDLFVERSKAFSNCY 98
>pdb|4FP8|A Chain A, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FP8|B Chain B, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FP8|C Chain C, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FP8|D Chain D, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
Length = 278
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 233 NQGRRLLDLMDMAVLDFLIGNMDRHHYETFKAFDNETFPIHLDHGRGFGRAY 284
N R+LD +D ++D L+G D H F NET+ + ++ + F Y
Sbjct: 15 NNPHRILDGIDCTLIDALLG--DPH----CDVFQNETWDLFVERSKAFSNCY 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,673,347
Number of Sequences: 62578
Number of extensions: 659847
Number of successful extensions: 1759
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1747
Number of HSP's gapped (non-prelim): 30
length of query: 493
length of database: 14,973,337
effective HSP length: 103
effective length of query: 390
effective length of database: 8,527,803
effective search space: 3325843170
effective search space used: 3325843170
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)