Query psy187
Match_columns 493
No_of_seqs 294 out of 934
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 18:25:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy187.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/187hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3829|consensus 100.0 2E-110 5E-115 852.4 14.7 310 4-471 151-470 (486)
2 PF06702 DUF1193: Protein of u 100.0 5.8E-72 1.3E-76 538.9 11.5 215 102-472 1-215 (221)
3 KOG1692|consensus 100.0 9.2E-30 2E-34 240.0 11.7 134 255-416 67-200 (201)
4 KOG1691|consensus 100.0 1.2E-27 2.6E-32 229.0 16.9 180 214-416 25-209 (210)
5 KOG1690|consensus 99.9 6.8E-26 1.5E-30 214.7 11.5 138 253-416 77-214 (215)
6 KOG1693|consensus 99.9 4.5E-25 9.7E-30 209.4 14.3 178 213-418 25-208 (209)
7 KOG3287|consensus 99.9 2.2E-24 4.8E-29 206.8 16.7 182 210-416 33-228 (236)
8 PF01105 EMP24_GP25L: emp24/gp 99.8 1.2E-22 2.6E-27 185.9 0.9 121 265-412 62-183 (183)
9 PF06702 DUF1193: Protein of u 99.7 2.6E-18 5.7E-23 166.9 -3.3 87 174-263 14-114 (221)
10 KOG3829|consensus 99.4 6.8E-15 1.5E-19 152.4 -3.3 84 176-262 273-369 (486)
11 PF15051 FAM198: FAM198 protei 97.5 7E-05 1.5E-09 76.5 3.1 46 41-86 58-103 (326)
12 PF10779 XhlA: Haemolysin XhlA 51.8 1.3E+02 0.0028 24.5 9.1 17 384-400 51-67 (71)
13 PHA02888 hypothetical protein; 49.6 8 0.00017 32.9 0.9 10 108-117 17-26 (96)
14 TIGR03843 conserved hypothetic 47.3 15 0.00032 37.5 2.6 46 31-82 32-77 (253)
15 PF10805 DUF2730: Protein of u 37.3 61 0.0013 28.6 4.6 29 386-414 7-35 (106)
16 PF07804 HipA_C: HipA-like C-t 37.3 21 0.00046 29.2 1.7 23 189-211 39-61 (79)
17 PF13897 GOLD_2: Golgi-dynamic 36.5 29 0.00062 32.4 2.5 25 292-326 110-134 (136)
18 KOG3202|consensus 35.2 2E+02 0.0044 29.1 8.5 67 340-406 151-234 (235)
19 PF04728 LPP: Lipoprotein leuc 33.3 2.3E+02 0.005 22.7 6.7 45 342-386 4-48 (56)
20 TIGR02574 stabl_TIGR02574 puta 32.0 75 0.0016 25.3 4.0 33 426-458 11-43 (63)
21 PF11278 DUF3079: Protein of u 30.7 23 0.0005 27.6 0.8 18 115-132 18-35 (52)
22 PF14584 DUF4446: Protein of u 28.7 1.5E+02 0.0032 28.0 5.9 82 385-470 3-84 (151)
23 PF09425 CCT_2: Divergent CCT 27.8 32 0.0007 23.7 1.0 21 405-425 6-26 (27)
24 PF09753 Use1: Membrane fusion 27.1 3.1E+02 0.0067 27.4 8.3 22 387-408 228-249 (251)
25 PF13280 WYL: WYL domain 27.0 18 0.0004 32.2 -0.4 66 5-74 2-68 (172)
26 PF09323 DUF1980: Domain of un 26.7 65 0.0014 30.7 3.3 37 378-414 24-60 (182)
27 PRK15396 murein lipoprotein; P 25.1 3.2E+02 0.0069 23.2 6.7 46 341-386 25-70 (78)
28 PRK00523 hypothetical protein; 25.0 1.8E+02 0.0038 24.5 5.0 47 387-438 6-56 (72)
29 PRK01844 hypothetical protein; 23.0 2E+02 0.0044 24.2 5.0 46 388-438 6-55 (72)
30 COG5415 Predicted integral mem 22.2 6.9E+02 0.015 25.4 9.3 31 341-371 15-45 (251)
31 KOG4767|consensus 21.8 46 0.001 33.1 1.2 30 96-126 180-209 (231)
32 PF01519 DUF16: Protein of unk 21.3 3.7E+02 0.0081 24.1 6.6 44 342-385 54-97 (102)
33 PF00957 Synaptobrevin: Synapt 21.2 4.8E+02 0.01 21.6 10.3 35 355-389 31-65 (89)
34 TIGR03843 conserved hypothetic 21.1 94 0.002 31.9 3.3 23 439-461 213-235 (253)
35 PHA02148 hypothetical protein 21.0 5.7E+02 0.012 22.6 7.5 64 341-404 37-101 (110)
36 PF04678 DUF607: Protein of un 20.7 5.9E+02 0.013 24.3 8.5 45 347-391 56-100 (180)
No 1
>KOG3829|consensus
Probab=100.00 E-value=2.1e-110 Score=852.36 Aligned_cols=310 Identities=55% Similarity=1.007 Sum_probs=295.3
Q ss_pred hhHHHHhcccccccc---------ceee-eeccCCCceeecccCCCCCCcccCCCcccccccccccchhhhhhhhhhcCC
Q psy187 4 AVLDFLIGNMDRHHY---------ETFK-AFDNETFPIHLVKHSRFPRDQQTLPNHFYFTDYERHNSEIATFHLDRLLGF 73 (493)
Q Consensus 4 ~~~~~~~~~~~~~~y---------~~f~-~~~~~~~~~a~fkp~~~~r~~~~~~~~~~~~~~~rhn~ei~afhl~~~l~~ 73 (493)
..+|.|+|.|++.++ ++.| +++|+|+||||||||||+||++|+|+ ||+||||||||||||||||||||
T Consensus 151 ~~~~alL~~l~~~pI~~v~v~~~GtqLKlll~~~~~~KavfKPmR~~Rd~~~~~~--yfs~~dRHnAEiAAFHLDRiL~F 228 (486)
T KOG3829|consen 151 QSMGALLHALRTEPITRVSVLGRGTQLKLLLRLSHQQKVVFKPMRYPRDEVIDGM--YYSGFDRHNAEVAAFHLDRVLDF 228 (486)
T ss_pred hhHHHHHHHhhcCcceEEeecCCceEEEEEEEecCCceeeeccccCCccccCCCc--ccccccccchhhhhhhhhhhhcc
Confidence 568899999999999 3899 89999999999999999999999999 88999999999999999999999
Q ss_pred cCCCcccccccccccccccccchhhhccccccCCCCeeeeeecccccCCCCccccCCCccccceeeccCCcccccccccc
Q psy187 74 RRAMPVTGRLCNITSEIYPLVDGELLKTFFVSPGNNICFHGKCSYYCDTSHAVCGNPDMLEGSYAAFLPDKSVAERKVWR 153 (493)
Q Consensus 74 ~r~~~~~gr~~~~t~ei~~~~~~~l~~t~~~~~~~~~C~y~~c~y~C~~~~~~cg~~~~~e~s~~~~lp~~~~~~~~~~r 153 (493)
||+||||||+||||+||+++|+++|++|||+||++|.||||||+|||+|+|++||+|+++|||+++|||+.+.++|+.||
T Consensus 229 rRappvVGRvvNlttEI~~~a~~~LlqtfFvsp~~N~CF~gKC~YyC~t~~avCg~pdmlEGS~~~fLP~~~~~prk~~r 308 (486)
T KOG3829|consen 229 RRAPPVVGRVVNLTTEIYEKAEEELLQTFFVSPAENYCFFGKCDYYCDTEEAVCGDPDMLEGSLIAFLPDESTLPRKHRR 308 (486)
T ss_pred cccCcccceeeeeehHHHHhhHHHHHhheeeccCcceEEeeccccccCCcccccCCcccccceEEEEcCCcccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhhhhhhcccCCccccccccCCCCCccchhhhhhhHHHHhhhcCCccccccceecccCCccccceeeccCCCC
Q psy187 154 HPWRRSYHKRRKAQWEHDADYCDIVREIPPYNQGRRLLDLMDMAVLDFLIGNMDRHHYETFKVSTDADYCDIVREIPPYN 233 (493)
Q Consensus 154 ~p~~r~y~~~~~~~we~~~~yc~~~~~~~~~~~~~~ll~~~d~~i~~fl~g~~~rh~ye~~~~~~de~~C~lV~~~p~~~ 233 (493)
|||+|||++.+||+||+|++||+.||+++||++|+||||+|||+|||||+|||||||||+|++++|
T Consensus 309 ~Pw~RtY~~~k~a~WE~d~~YCd~VK~~~pY~~g~RLlDliD~aIfDyLiGN~DRHHYEtF~~f~d-------------- 374 (486)
T KOG3829|consen 309 SPWRRTYKKDKKAEWEDDMNYCDKVKSIKPYDEGRRLLDLIDMAIFDYLIGNMDRHHYETFEVFGD-------------- 374 (486)
T ss_pred CccccccccccccccccchHHHHHhcccCccccchhHHHHHHHHHHHHHhcccchhhhhhhhccCC--------------
Confidence 999999999999999999999999999999999999999999999999999999999987776653
Q ss_pred cCCccccccceEEEecccCCccccccceeeecCCcceeeecCCCCCCCccccccccccccceeEEeeecccccccccCcc
Q psy187 234 QGRRLLDLMDMAVLDFLIGNMDRHHYETFKAFDNETFPIHLDHGRGFGRAYHDELSILAPILQCCLIRERTLNTLLNNEF 313 (493)
Q Consensus 234 ~gsrlldlid~~ViD~liGN~Diih~e~~~~~G~~~Fta~~dG~k~~g~~~~g~~si~aGeY~fCF~n~st~~~~FdN~f 313 (493)
.+|.+|.|+||+||+++|++.+|+++.|++|+...+|..
T Consensus 375 ----------------------------------~s~~ihLDngr~FGrp~~De~sILaPL~QCCliRkST~~------- 413 (486)
T KOG3829|consen 375 ----------------------------------LSFLIHLDNGRAFGRPSHDELSILAPLYQCCLIRKSTWD------- 413 (486)
T ss_pred ----------------------------------cceEEEeccccccCCCCcchHHHHHHHHhhheeeHHHHH-------
Confidence 246788999999999999999999999999998887731
Q ss_pred cccccEEEEEEEEeCCCCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy187 314 STYSHKVVYMDFQVGDEPQLPGVGEHVTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEF 393 (493)
Q Consensus 314 St~s~K~V~FdI~VG~ea~d~~~iakke~Ld~LE~~L~rL~~~L~~I~~EQ~ylR~RE~r~R~t~ESTNsRV~~wSIlqI 393 (493)
T Consensus 414 -------------------------------------------------------------------------------- 413 (486)
T KOG3829|consen 414 -------------------------------------------------------------------------------- 413 (486)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhHHHHHHHHHHHhhccccccccCccchHHHHHHhhccCCCCCCCchhhHHHHHHhHHHHHHHHHHHHHhhCC
Q psy187 394 VVVLLASTLQVYIVKNFFASRNERQFHNGPKKLSEAMVESMSRDPIAPILWQPHLDALDRRVKIILQAIRHCIEVRLD 471 (493)
Q Consensus 394 lVLI~vai~QV~yLKrFFkkKK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (493)
+.+.+++||+.||++|.|||+.||++||||+|||+|+||||.+||++|++||+.+|+
T Consensus 414 ---------------------~L~~f~~gpk~Lt~~l~esl~qDp~sPvLt~pHl~A~dRRl~~Il~tV~~C~~~~g~ 470 (486)
T KOG3829|consen 414 ---------------------RLQVFSNGPKVLTEALDESLSQDPLSPVLTDPHLKAVDRRLLVILATVEHCIDIEGD 470 (486)
T ss_pred ---------------------HHHHHhcCChhHHHHHHHHhccCCCCcccccchHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 122589999999999999999999999999999999999999999999999999998
No 2
>PF06702 DUF1193: Protein of unknown function (DUF1193); InterPro: IPR009581 This family is baesd on the C terminus of several hypothetical eukaryotic proteins of unknown function. Proteins in this entry contain two conserved motifs: DRHHYE and QCC, as well as a number of conserved cysteine residues.
Probab=100.00 E-value=5.8e-72 Score=538.86 Aligned_cols=215 Identities=63% Similarity=1.176 Sum_probs=200.7
Q ss_pred ccccCCCCeeeeeecccccCCCCccccCCCccccceeeccCCccccccccccCCCcchhhhhhhhhcccCCccccccccC
Q psy187 102 FFVSPGNNICFHGKCSYYCDTSHAVCGNPDMLEGSYAAFLPDKSVAERKVWRHPWRRSYHKRRKAQWEHDADYCDIVREI 181 (493)
Q Consensus 102 ~~~~~~~~~C~y~~c~y~C~~~~~~cg~~~~~e~s~~~~lp~~~~~~~~~~r~p~~r~y~~~~~~~we~~~~yc~~~~~~ 181 (493)
||+||+||+||||||+|||+++|||||+|++||||+++|||++++|+|++|||||||||++++||+||+|++||..||++
T Consensus 1 ff~s~~~n~Cf~g~C~yyC~~~~avCg~~d~lEgs~~~~LP~~~~~~~~~~r~Pw~RsY~~~~~a~WE~~~~yC~~vk~~ 80 (221)
T PF06702_consen 1 FFISPANNTCFYGKCSYYCKTEHAVCGNPDMLEGSLAAFLPDLSLAPRKSWRSPWRRSYSKRKKAEWETDPNYCDTVKQT 80 (221)
T ss_pred CccCCCCCEEEeecCccccCCcccccCCCCceeeeeeeecCCcccchhhhCCCCCCCCcCccchhhhccChhHHHHHhhc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchhhhhhhHHHHhhhcCCccccccceecccCCccccceeeccCCCCcCCccccccceEEEecccCCccccccce
Q psy187 182 PPYNQGRRLLDLMDMAVLDFLIGNMDRHHYETFKVSTDADYCDIVREIPPYNQGRRLLDLMDMAVLDFLIGNMDRHHYET 261 (493)
Q Consensus 182 ~~~~~~~~ll~~~d~~i~~fl~g~~~rh~ye~~~~~~de~~C~lV~~~p~~~~gsrlldlid~~ViD~liGN~Diih~e~ 261 (493)
|||+.|+||+|+|||+|||||+|||||||||+|++++|++
T Consensus 81 ~py~~g~rLldliDm~IFDFLigN~DRhhye~f~~fgn~~---------------------------------------- 120 (221)
T PF06702_consen 81 PPYDSGRRLLDLIDMAIFDFLIGNMDRHHYETFNKFGNEG---------------------------------------- 120 (221)
T ss_pred CCccccchhhHHHHHHHHHHHhcCCcchhhhhhhccCCCc----------------------------------------
Confidence 9999999999999999999999999999998777666442
Q ss_pred eeecCCcceeeecCCCCCCCccccccccccccceeEEeeecccccccccCcccccccEEEEEEEEeCCCCCCCCCCcccc
Q psy187 262 FKAFDNETFPIHLDHGRGFGRAYHDELSILAPILQCCLIRERTLNTLLNNEFSTYSHKVVYMDFQVGDEPQLPGVGEHVT 341 (493)
Q Consensus 262 ~~~~G~~~Fta~~dG~k~~g~~~~g~~si~aGeY~fCF~n~st~~~~FdN~fSt~s~K~V~FdI~VG~ea~d~~~iakke 341 (493)
|.++.|++|+||++++++.+|+++.+++|....+|..
T Consensus 121 --------~l~~LDNgrgFG~~~~de~sIlaPL~QcC~iRrST~~----------------------------------- 157 (221)
T PF06702_consen 121 --------FLLHLDNGRGFGRPSHDELSILAPLYQCCRIRRSTWE----------------------------------- 157 (221)
T ss_pred --------eEEEEeCCcccCCCCCCccchhccHHHhhhccccHHH-----------------------------------
Confidence 3488899999999999999999999999987776631
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcccccccc
Q psy187 342 VMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFFASRNERQFHN 421 (493)
Q Consensus 342 ~Ld~LE~~L~rL~~~L~~I~~EQ~ylR~RE~r~R~t~ESTNsRV~~wSIlqIlVLI~vai~QV~yLKrFFkkKK~~~~~~ 421 (493)
+.+.++.
T Consensus 158 -------------------------------------------------------------------------rL~~l~~ 164 (221)
T PF06702_consen 158 -------------------------------------------------------------------------RLQLLSK 164 (221)
T ss_pred -------------------------------------------------------------------------HHHHhcc
Confidence 2236888
Q ss_pred CccchHHHHHHhhccCCCCCCCchhhHHHHHHhHHHHHHHHHHHHHhhCCC
Q psy187 422 GPKKLSEAMVESMSRDPIAPILWQPHLDALDRRVKIILQAIRHCIEVRLDK 472 (493)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (493)
++++||++|++|+++||++|||++|||+||||||.+||++|++|++++|..
T Consensus 165 ~~~~Ls~~m~~s~~~D~l~PvL~e~Hl~AldrRL~~Vl~~V~~Ci~k~g~~ 215 (221)
T PF06702_consen 165 GGYRLSDLMRESLSRDPLAPVLTEPHLEALDRRLDKVLRTVEKCIEKYGEE 215 (221)
T ss_pred CCCcHHHHHHHHhccCccCccCcHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 899999999999999999999999999999999999999999999999853
No 3
>KOG1692|consensus
Probab=99.96 E-value=9.2e-30 Score=239.97 Aligned_cols=134 Identities=27% Similarity=0.379 Sum_probs=125.6
Q ss_pred cccccceeeecCCcceeeecCCCCCCCccccccccccccceeEEeeecccccccccCcccccccEEEEEEEEeCCCCCCC
Q psy187 255 DRHHYETFKAFDNETFPIHLDHGRGFGRAYHDELSILAPILQCCLIRERTLNTLLNNEFSTYSHKVVYMDFQVGDEPQLP 334 (493)
Q Consensus 255 Diih~e~~~~~G~~~Fta~~dG~k~~g~~~~g~~si~aGeY~fCF~n~st~~~~FdN~fSt~s~K~V~FdI~VG~ea~d~ 334 (493)
+++|....++.|+++|+++.+| .|++| |+|.+|++++|+|.|+|++|.....+
T Consensus 67 ~~i~~~~~~ssgk~tF~a~~~G-----------------~Y~fC----------F~N~~s~mtpk~V~F~ihvg~~~~~~ 119 (201)
T KOG1692|consen 67 KIIHKGKRESSGKYTFTAPKKG-----------------TYTFC----------FSNKMSTMTPKTVMFTIHVGHAPQRD 119 (201)
T ss_pred chhhhcccccCceEEEEecCCc-----------------eEEEE----------ecCCCCCCCceEEEEEEEEeeccccc
Confidence 4588889999999999999999 99999 89999999999999999999987665
Q ss_pred CCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc
Q psy187 335 GVGEHVTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFFASR 414 (493)
Q Consensus 335 ~~iakke~Ld~LE~~L~rL~~~L~~I~~EQ~ylR~RE~r~R~t~ESTNsRV~~wSIlqIlVLI~vai~QV~yLKrFFkkK 414 (493)
. .+++++.++|+..+++|.+.|..++.||+|+..||.+||+++|+||+||+|||++|.++||+++++|||||||||+.|
T Consensus 120 d-~~~d~~~~~L~~~I~eL~~al~~Vk~EQeY~~~Rer~Hr~~nEntn~RVv~wsife~~vLi~~s~~QVyYLkRfFEvk 198 (201)
T KOG1692|consen 120 D-LAKDAHQNKLEEMIRELSEALTSVKHEQEYMEARERIHRNTNENTNSRVVLWSIFEALVLIAMSVLQVYYLKRFFEVK 198 (201)
T ss_pred h-hcccccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccceeehHHHHHHHHHHHHHHHHHHHHHHhheee
Confidence 4 567788889999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q psy187 415 NE 416 (493)
Q Consensus 415 K~ 416 (493)
+.
T Consensus 199 rv 200 (201)
T KOG1692|consen 199 RV 200 (201)
T ss_pred ec
Confidence 64
No 4
>KOG1691|consensus
Probab=99.95 E-value=1.2e-27 Score=228.96 Aligned_cols=180 Identities=18% Similarity=0.280 Sum_probs=146.0
Q ss_pred ecccCCcccc--ceeeccCCCCcCCccccccceEEEecccCCccccccceeeecCCcceeeecCCCCCCCcccccccccc
Q psy187 214 FKVSTDADYC--DIVREIPPYNQGRRLLDLMDMAVLDFLIGNMDRHHYETFKAFDNETFPIHLDHGRGFGRAYHDELSIL 291 (493)
Q Consensus 214 ~~~~~de~~C--~lV~~~p~~~~gsrlldlid~~ViD~liGN~Diih~e~~~~~G~~~Fta~~dG~k~~g~~~~g~~si~ 291 (493)
|.......-| +-| +++.+-+.+|.++|...+.+ |.-.....++.|-+.+... ++.+|.++|+
T Consensus 25 f~v~~~~~kCi~EeI--------~~n~lv~g~y~i~~~~~~~~---~~~~~~Vts~~G~~~~~~e-----nv~~gqFaFt 88 (210)
T KOG1691|consen 25 FDVPSKTTKCISEEI--------HENVLVVGDYEIINPNGDHS---HKLSVKVTSPYGNNLHSKE-----NVTKGQFAFT 88 (210)
T ss_pred EEecCCCCEeehhhh--------ccCeEEEEEEEEecCCCCcc---ceEEEEEEcCCCceeehhh-----ccccceEEEE
Confidence 4445555777 445 66788888999888743321 2224445555555555554 4556666666
Q ss_pred c---cceeEEeeecccccccccCcccccccEEEEEEEEeCCCCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy187 292 A---PILQCCLIRERTLNTLLNNEFSTYSHKVVYMDFQVGDEPQLPGVGEHVTVMTQMESSTQEIHKSLNTIIDYQTHHR 368 (493)
Q Consensus 292 a---GeY~fCF~n~st~~~~FdN~fSt~s~K~V~FdI~VG~ea~d~~~iakke~Ld~LE~~L~rL~~~L~~I~~EQ~ylR 368 (493)
+ |.|.+||.+..+. .+......|.|||+.|.++++|+++|++++++++|.+|++|++.++.|++++.|+|
T Consensus 89 a~e~~~y~~Cf~~~~~~-------~~p~~~~~I~ld~k~Gv~akdw~~IAKkeklep~E~elrrLed~~~sI~~e~~YLr 161 (210)
T KOG1691|consen 89 AEESGMYEACFTADVPG-------HKPETKRSIDLDWKTGVEAKDWDSIAKKEKLEPLEVELRRLEDLVESIHEEMYYLR 161 (210)
T ss_pred eccCCcEEEEEecccCC-------CCCCcceEEEEEeeccccccchHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 5999999884432 23345689999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhccc
Q psy187 369 LREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFFASRNE 416 (493)
Q Consensus 369 ~RE~r~R~t~ESTNsRV~~wSIlqIlVLI~vai~QV~yLKrFFkkKK~ 416 (493)
.||++||++||+||+||.|+|++.++|++++++|||+|||+||++||.
T Consensus 162 ~REeemr~~nesTNsrv~~fSi~Sl~v~~~va~~QvlyLK~fF~kKKL 209 (210)
T KOG1691|consen 162 EREEEMRNTNESTNSRVAWFSILSLVVLLSVAGWQVLYLKRFFQKKKL 209 (210)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999985
No 5
>KOG1690|consensus
Probab=99.93 E-value=6.8e-26 Score=214.73 Aligned_cols=138 Identities=26% Similarity=0.363 Sum_probs=120.4
Q ss_pred CccccccceeeecCCcceeeecCCCCCCCccccccccccccceeEEeeecccccccccCcccccccEEEEEEEEeCCCCC
Q psy187 253 NMDRHHYETFKAFDNETFPIHLDHGRGFGRAYHDELSILAPILQCCLIRERTLNTLLNNEFSTYSHKVVYMDFQVGDEPQ 332 (493)
Q Consensus 253 N~Diih~e~~~~~G~~~Fta~~dG~k~~g~~~~g~~si~aGeY~fCF~n~st~~~~FdN~fSt~s~K~V~FdI~VG~ea~ 332 (493)
|..++......++|.++|+++..| +|+||++++++.| ++. +.-.|++||.+|+.+.
T Consensus 77 nnh~Vl~q~~ss~G~ftFta~~~G-----------------eH~IC~~s~s~aw------f~~-aklRvhld~qvG~~a~ 132 (215)
T KOG1690|consen 77 NNHVVLSQQYSSEGDFTFTALTPG-----------------EHRICIQSNSTAW------FNG-AKLRVHLDIQVGDHAN 132 (215)
T ss_pred CceEEEeecCCCCCceEEEccCCC-----------------ceEEEEecccchh------hcc-ceEEEEEEEeeCchhh
Confidence 333455556777888888888877 9999999998754 333 5568999999999999
Q ss_pred CCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q psy187 333 LPGVGEHVTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFFA 412 (493)
Q Consensus 333 d~~~iakke~Ld~LE~~L~rL~~~L~~I~~EQ~ylR~RE~r~R~t~ESTNsRV~~wSIlqIlVLI~vai~QV~yLKrFFk 412 (493)
++++. +++.+.++.++++|.+++.+|+.||+++|.||+++|+++||+|+||+|||++|++||+++|+||+.|||+||.
T Consensus 133 l~a~~--ke~~k~l~~Rv~~L~~~~~~IrkEQ~~~R~RE~~FR~tSES~NsRvm~Wsv~Q~vvL~~tc~wQmrhL~~FFv 210 (215)
T KOG1690|consen 133 LDAQI--KETDKLLEGRVRQLNSRLESIRKEQNLQREREETFRDTSESANSRVMWWSVAQLVVLLVTCIWQMRHLKSFFV 210 (215)
T ss_pred hhhhh--hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcceeeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88764 5667778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccc
Q psy187 413 SRNE 416 (493)
Q Consensus 413 kKK~ 416 (493)
++|.
T Consensus 211 kqKl 214 (215)
T KOG1690|consen 211 KQKL 214 (215)
T ss_pred Hhhc
Confidence 9885
No 6
>KOG1693|consensus
Probab=99.92 E-value=4.5e-25 Score=209.40 Aligned_cols=178 Identities=38% Similarity=0.572 Sum_probs=142.5
Q ss_pred eecccCCccccc--eeeccCCCCcCCccccccceEEEecccCCccccccceeeecCCcceeeecCCCCCCCccccccccc
Q psy187 213 TFKVSTDADYCD--IVREIPPYNQGRRLLDLMDMAVLDFLIGNMDRHHYETFKAFDNETFPIHLDHGRGFGRAYHDELSI 290 (493)
Q Consensus 213 ~~~~~~de~~C~--lV~~~p~~~~gsrlldlid~~ViD~liGN~Diih~e~~~~~G~~~Fta~~dG~k~~g~~~~g~~si 290 (493)
+|+...++.-|. .+++ + .-.-.+++||+-| |+-|+ +...+.|.+-++.++.| .+++++.|
T Consensus 25 TfeLp~~aKqC~Y~d~~~------~-~~~~~~~fqV~tG--G~fDV----D~~I~aPdgkvI~~~~k-----k~~~~~~f 86 (209)
T KOG1693|consen 25 TFELPDNAKQCFYEDLKK------D-DDTTSFEFQVQTG--GHFDV----DYDIEAPDGKVIYSEKK-----KRYDSFLF 86 (209)
T ss_pred EEEcCCcchhheeeeccc------C-CceEEEEEEEEeC--Cceee----EEEEECCCCCEEeeccc-----cccccEEE
Confidence 689999999994 2222 1 1112377888877 66665 45555555555555542 33444555
Q ss_pred cc---cceeEEeeecccccccccCcccccccEEEEEEEEeCCCCCCCCCC-ccccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy187 291 LA---PILQCCLIRERTLNTLLNNEFSTYSHKVVYMDFQVGDEPQLPGVG-EHVTVMTQMESSTQEIHKSLNTIIDYQTH 366 (493)
Q Consensus 291 ~a---GeY~fCF~n~st~~~~FdN~fSt~s~K~V~FdI~VG~ea~d~~~i-akke~Ld~LE~~L~rL~~~L~~I~~EQ~y 366 (493)
.+ |+|+|| |+|.||++++|+|++++.+|++....... +.+..++.+|..+..|+++|+.|.+.|.|
T Consensus 87 ~ae~~G~Y~fC----------FsN~fstf~~Kiv~~~~q~~~~~~~~~~~~~~~~~~~~mena~~~I~~~L~~I~~~q~y 156 (209)
T KOG1693|consen 87 KAEGKGEYTFC----------FSNEFSTFSHKIVYMDFQVGEEPPLHPAVSNRDTALTQMENAIVEIHRALNKIDDTQTY 156 (209)
T ss_pred EEecceEEEEE----------ecCccccccceEeeehhhhccccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 699999 89999999999999999999877655443 34457899999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhccccc
Q psy187 367 HRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFFASRNERQ 418 (493)
Q Consensus 367 lR~RE~r~R~t~ESTNsRV~~wSIlqIlVLI~vai~QV~yLKrFFkkKK~~~ 418 (493)
+|.||+|.|.+++|||+||+|||++++++++++++.||+.||.||..|+++.
T Consensus 157 ~R~RE~rn~~tv~st~~Rv~~~Sl~e~~~vv~iSi~Qv~ilk~fFt~~r~~~ 208 (209)
T KOG1693|consen 157 YRLREARNRSTVESTNSRVTWWSLLEIIAVVVISIAQVFILKFFFTDRRKRY 208 (209)
T ss_pred HHHHHhcCccchhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCC
Confidence 9999999999999999999999999999999999999999999999998764
No 7
>KOG3287|consensus
Probab=99.92 E-value=2.2e-24 Score=206.83 Aligned_cols=182 Identities=24% Similarity=0.407 Sum_probs=152.6
Q ss_pred ccc-eecccCCccccc--eeeccCCCCcCCccccccceEEEecccCCccccccceeeecCCcceeeecCCCCCCCccccc
Q psy187 210 HYE-TFKVSTDADYCD--IVREIPPYNQGRRLLDLMDMAVLDFLIGNMDRHHYETFKAFDNETFPIHLDHGRGFGRAYHD 286 (493)
Q Consensus 210 ~ye-~~~~~~de~~C~--lV~~~p~~~~gsrlldlid~~ViD~liGN~Diih~e~~~~~G~~~Fta~~dG~k~~g~~~~g 286 (493)
.|+ ++.......-|+ .|.- + --+ -++|||+|| .||.++ .+....|.+-.+..+.+|..|.|+++
T Consensus 33 d~dftv~ipAGk~eCf~Q~v~~------~-~tl-e~eyQVi~G-~GDl~i----~Ftl~~P~G~~lv~~q~k~dg~ht~e 99 (236)
T KOG3287|consen 33 DYDFTVMIPAGKTECFYQPVPQ------G-ATL-EVEYQVIDG-AGDLDI----DFTLLNPAGEVLVSDQRKVDGVHTVE 99 (236)
T ss_pred ccceEEEecCCCceeeeeeccC------C-eEE-EEEEEEEec-CCccce----eeEEeCCCccEEeecccccCceeEee
Confidence 344 466777777785 3322 1 122 289999999 889988 88888888888999999999999988
Q ss_pred cccccccceeEEeeecccccccccCcccccccEEEEEEEEeCCCCCC------CCCCc-----cccchhhHHHHHHHHHH
Q psy187 287 ELSILAPILQCCLIRERTLNTLLNNEFSTYSHKVVYMDFQVGDEPQL------PGVGE-----HVTVMTQMESSTQEIHK 355 (493)
Q Consensus 287 ~~si~aGeY~fCF~n~st~~~~FdN~fSt~s~K~V~FdI~VG~ea~d------~~~ia-----kke~Ld~LE~~L~rL~~ 355 (493)
.-+ +|+|++| |||+||+++.|.|+|++-+...... |.+.+ -..+++.+++.+..++.
T Consensus 100 ~~e--~GdY~~C----------fDNsFS~fs~K~Vffeli~~~~g~~~e~~e~w~k~~e~~~~Ld~kl~di~~~i~~i~~ 167 (236)
T KOG3287|consen 100 VTE--TGDYQVC----------FDNSFSTFSRKLVFFELILDAHGEFYEGDETWHKYKERTEQLDVKLDDIEDSIGTIKN 167 (236)
T ss_pred ccC--CcceEEE----------EcCccccccceEEEEEEEeccccchhccchhHhhhhhhhhhhcccHHHHHHHHHHHHH
Confidence 765 8999999 9999999999999999966543322 11111 13578999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhccc
Q psy187 356 SLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFFASRNE 416 (493)
Q Consensus 356 ~L~~I~~EQ~ylR~RE~r~R~t~ESTNsRV~~wSIlqIlVLI~vai~QV~yLKrFFkkKK~ 416 (493)
+|+.+.+.|..+|+||+|+|++.||+..||.|||++|++|||+++++||++|||+|+.|++
T Consensus 168 nl~k~~~~q~~lRa~EaRDr~L~esNf~rVN~WS~vq~~vmi~v~~iQVf~lrslFe~~~~ 228 (236)
T KOG3287|consen 168 NLNKMWQYQALLRAREARDRNLQESNFDRVNFWSMVQTLVMILVGIIQVFMLRSLFEVKSK 228 (236)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHhcccchhhHHHHHHHHHHHHHhhhhhhhhHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999998875
No 8
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=99.85 E-value=1.2e-22 Score=185.87 Aligned_cols=121 Identities=33% Similarity=0.487 Sum_probs=5.6
Q ss_pred cCCcceeeecCCCCCCCccccccccccccceeEEeeecccccccccCccccccc-EEEEEEEEeCCCCCCCCCCccccch
Q psy187 265 FDNETFPIHLDHGRGFGRAYHDELSILAPILQCCLIRERTLNTLLNNEFSTYSH-KVVYMDFQVGDEPQLPGVGEHVTVM 343 (493)
Q Consensus 265 ~G~~~Fta~~dG~k~~g~~~~g~~si~aGeY~fCF~n~st~~~~FdN~fSt~s~-K~V~FdI~VG~ea~d~~~iakke~L 343 (493)
.|.+.|++...| +|++|| +|..+..++ +.|.|++++|.+..++...++++++
T Consensus 62 ~~~f~f~~~~~G-----------------~y~iCf----------~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 114 (183)
T PF01105_consen 62 EGSFSFTAKESG-----------------EYQICF----------DNSSSSFSPSKRVSFDIDVGNENKDYKNVAKKEHL 114 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEeccCC-----------------CEEEEE----------EcCCCCccccEEEEEEEEEeecccchhhhhhhhhh
Confidence 356777776655 999994 555555555 9999999999887777778889999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q psy187 344 TQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFFA 412 (493)
Q Consensus 344 d~LE~~L~rL~~~L~~I~~EQ~ylR~RE~r~R~t~ESTNsRV~~wSIlqIlVLI~vai~QV~yLKrFFk 412 (493)
++++..|.+|...+..|+.+|.|++.|+++++.++|+++.||++||++++++++++++||+++||+||+
T Consensus 115 ~~~~~~l~~l~~~l~~i~~~q~~~~~r~~~~~~~~es~~~~i~~~si~~~~vli~~~~~Qv~~lk~~f~ 183 (183)
T PF01105_consen 115 DPLEESLEKLESNLKEIKDEQKYLREREERHRQLNESTNSRIMWWSIIQIVVLILVSVWQVYYLKKFFK 183 (183)
T ss_dssp ---------------------------------------------------------------HHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheEEhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999996
No 9
>PF06702 DUF1193: Protein of unknown function (DUF1193); InterPro: IPR009581 This family is baesd on the C terminus of several hypothetical eukaryotic proteins of unknown function. Proteins in this entry contain two conserved motifs: DRHHYE and QCC, as well as a number of conserved cysteine residues.
Probab=99.66 E-value=2.6e-18 Score=166.87 Aligned_cols=87 Identities=45% Similarity=0.852 Sum_probs=80.1
Q ss_pred cc-cccccCCCCCccchhhhhhhHHHHhhhcC------Cccccccc-ee------cccCCccccceeeccCCCCcCCccc
Q psy187 174 YC-DIVREIPPYNQGRRLLDLMDMAVLDFLIG------NMDRHHYE-TF------KVSTDADYCDIVREIPPYNQGRRLL 239 (493)
Q Consensus 174 yc-~~~~~~~~~~~~~~ll~~~d~~i~~fl~g------~~~rh~ye-~~------~~~~de~~C~lV~~~p~~~~gsrll 239 (493)
-| +||++..++|+.+ |+|||++..|||+ ...||||+ +| +||.|++||+.|++++||+.|.||+
T Consensus 14 ~C~yyC~~~~avCg~~---d~lEgs~~~~LP~~~~~~~~~~r~Pw~RsY~~~~~a~WE~~~~yC~~vk~~~py~~g~rLl 90 (221)
T PF06702_consen 14 KCSYYCKTEHAVCGNP---DMLEGSLAAFLPDLSLAPRKSWRSPWRRSYSKRKKAEWETDPNYCDTVKQTPPYDSGRRLL 90 (221)
T ss_pred cCccccCCcccccCCC---CceeeeeeeecCCcccchhhhCCCCCCCCcCccchhhhccChhHHHHHhhcCCccccchhh
Confidence 37 7999999999955 7899999999999 38899997 46 6999999999999999999999999
Q ss_pred cccceEEEecccCCccccccceee
Q psy187 240 DLMDMAVLDFLIGNMDRHHYETFK 263 (493)
Q Consensus 240 dlid~~ViD~liGN~Diih~e~~~ 263 (493)
|++||.|+||+|||+|+|||+.++
T Consensus 91 dliDm~IFDFLigN~DRhhye~f~ 114 (221)
T PF06702_consen 91 DLIDMAIFDFLIGNMDRHHYETFN 114 (221)
T ss_pred HHHHHHHHHHHhcCCcchhhhhhh
Confidence 999999999999999999998763
No 10
>KOG3829|consensus
Probab=99.43 E-value=6.8e-15 Score=152.42 Aligned_cols=84 Identities=44% Similarity=0.829 Sum_probs=78.9
Q ss_pred cccccCCCCCccchhhhhhhHHHHhhhcC------Cccccccc-ee------cccCCccccceeeccCCCCcCCcccccc
Q psy187 176 DIVREIPPYNQGRRLLDLMDMAVLDFLIG------NMDRHHYE-TF------KVSTDADYCDIVREIPPYNQGRRLLDLM 242 (493)
Q Consensus 176 ~~~~~~~~~~~~~~ll~~~d~~i~~fl~g------~~~rh~ye-~~------~~~~de~~C~lV~~~p~~~~gsrlldli 242 (493)
+||++++++|+++ |++||++..|||+ ...||||. +| +|+.|+.||+.|+.++||+.|.||+|+|
T Consensus 273 YyC~t~~avCg~p---dmlEGS~~~fLP~~~~~prk~~r~Pw~RtY~~~k~a~WE~d~~YCd~VK~~~pY~~g~RLlDli 349 (486)
T KOG3829|consen 273 YYCDTEEAVCGDP---DMLEGSLIAFLPDESTLPRKHRRSPWRRTYKKDKKAEWEDDMNYCDKVKSIKPYDEGRRLLDLI 349 (486)
T ss_pred cccCCcccccCCc---ccccceEEEEcCCcccccccccCCccccccccccccccccchHHHHHhcccCccccchhHHHHH
Confidence 7899999999977 8999999999999 36799997 57 6999999999999999999999999999
Q ss_pred ceEEEecccCCcccccccee
Q psy187 243 DMAVLDFLIGNMDRHHYETF 262 (493)
Q Consensus 243 d~~ViD~liGN~Diih~e~~ 262 (493)
||+|||++|||+|+||||+|
T Consensus 350 D~aIfDyLiGN~DRHHYEtF 369 (486)
T KOG3829|consen 350 DMAIFDYLIGNMDRHHYETF 369 (486)
T ss_pred HHHHHHHHhcccchhhhhhh
Confidence 99999999999999999776
No 11
>PF15051 FAM198: FAM198 protein
Probab=97.47 E-value=7e-05 Score=76.54 Aligned_cols=46 Identities=28% Similarity=0.449 Sum_probs=40.1
Q ss_pred CCcccCCCcccccccccccchhhhhhhhhhcCCcCCCccccccccc
Q psy187 41 RDQQTLPNHFYFTDYERHNSEIATFHLDRLLGFRRAMPVTGRLCNI 86 (493)
Q Consensus 41 r~~~~~~~~~~~~~~~rhn~ei~afhl~~~l~~~r~~~~~gr~~~~ 86 (493)
..+.-.+.+-....-...+.||.|||||||||++|.-|+|.|..+.
T Consensus 58 ~~~~C~~~~CGLiKrp~D~~EVfAFHLDRVLGLNRTLPaVsRkf~~ 103 (326)
T PF15051_consen 58 SSPRCGPGLCGLIKRPLDMSEVFAFHLDRVLGLNRTLPAVSRKFEF 103 (326)
T ss_pred cccccCCCceeeECCCCcHHHHHHHHHHHHhcccccchHhHhhhcc
Confidence 4444456667788899999999999999999999999999999987
No 12
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=51.85 E-value=1.3e+02 Score=24.48 Aligned_cols=17 Identities=12% Similarity=0.411 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy187 384 RVMWWSSIEFVVVLLAS 400 (493)
Q Consensus 384 RV~~wSIlqIlVLI~va 400 (493)
+-.|+.++..++..+++
T Consensus 51 kW~~r~iiGaiI~~i~~ 67 (71)
T PF10779_consen 51 KWIWRTIIGAIITAIIY 67 (71)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555555544443
No 13
>PHA02888 hypothetical protein; Provisional
Probab=49.58 E-value=8 Score=32.95 Aligned_cols=10 Identities=60% Similarity=1.378 Sum_probs=8.7
Q ss_pred CCeeeeeecc
Q psy187 108 NNICFHGKCS 117 (493)
Q Consensus 108 ~~~C~y~~c~ 117 (493)
|..||||+|+
T Consensus 17 ng~cffgkc~ 26 (96)
T PHA02888 17 NGECFFGKCE 26 (96)
T ss_pred cceeeeeecc
Confidence 6899999994
No 14
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=47.28 E-value=15 Score=37.46 Aligned_cols=46 Identities=24% Similarity=0.242 Sum_probs=34.1
Q ss_pred eeecccCCCCCCcccCCCcccccccccccchhhhhhhhhhcCCcCCCccccc
Q psy187 31 IHLVKHSRFPRDQQTLPNHFYFTDYERHNSEIATFHLDRLLGFRRAMPVTGR 82 (493)
Q Consensus 31 ~a~fkp~~~~r~~~~~~~~~~~~~~~rhn~ei~afhl~~~l~~~r~~~~~gr 82 (493)
.++|||.+-.|---- |-|=.=.-.|+|||-+|+.||+.=+||++=|
T Consensus 32 ~~VYKPv~gErPLWD------FpdGtLa~REvAAYlvs~~lGw~~VPpTvlr 77 (253)
T TIGR03843 32 RAVYKPVRGERPLWD------FPDGTLAGREVAAYLVSEALGWGLVPPTVLR 77 (253)
T ss_pred EEEECCcCCcccccc------CCCCchHHHHHHHHHHHHHhCCCcCCCeeee
Confidence 489999988764221 2221223679999999999999999998864
No 15
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=37.34 E-value=61 Score=28.57 Aligned_cols=29 Identities=10% Similarity=0.221 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhc
Q psy187 386 MWWSSIEFVVVLLASTLQVYIVKNFFASR 414 (493)
Q Consensus 386 ~~wSIlqIlVLI~vai~QV~yLKrFFkkK 414 (493)
.||+++..++.++.++++.+.=|+|-++.
T Consensus 7 ~~w~ii~a~~~~~~~~~~~~l~~~~a~~~ 35 (106)
T PF10805_consen 7 KNWGIIWAVFGIAGGIFWLWLRRTYAKRE 35 (106)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 58999999999999999988877765543
No 16
>PF07804 HipA_C: HipA-like C-terminal domain; InterPro: IPR012893 The members of this entry are similar to a region close to the C terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 3AKL_D 3AKJ_B 3AKK_D 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=37.26 E-value=21 Score=29.24 Aligned_cols=23 Identities=39% Similarity=0.671 Sum_probs=17.6
Q ss_pred hhhhhhhHHHHhhhcCCcccccc
Q psy187 189 RLLDLMDMAVLDFLIGNMDRHHY 211 (493)
Q Consensus 189 ~ll~~~d~~i~~fl~g~~~rh~y 211 (493)
....++.+.++++|+||.|+|.-
T Consensus 39 ~~~~l~~~~~fn~ligN~D~H~k 61 (79)
T PF07804_consen 39 DVRELFRRLVFNYLIGNTDRHLK 61 (79)
T ss_dssp HHHHHHHHHHHHHHCTBS---CC
T ss_pred HHHHHHHHHHHHHHHcCCcCCcC
Confidence 36688999999999999999976
No 17
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking
Probab=36.50 E-value=29 Score=32.41 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=21.1
Q ss_pred ccceeEEeeecccccccccCcccccccEEEEEEEE
Q psy187 292 APILQCCLIRERTLNTLLNNEFSTYSHKVVYMDFQ 326 (493)
Q Consensus 292 aGeY~fCF~n~st~~~~FdN~fSt~s~K~V~FdI~ 326 (493)
+|.|-++ |||++|-..+|.|+..|.
T Consensus 110 ~GvYvLk----------FDNSYS~~rsK~l~Y~V~ 134 (136)
T PF13897_consen 110 PGVYVLK----------FDNSYSWFRSKKLYYRVY 134 (136)
T ss_pred CeEEEEE----------eeCcceeEEeeEEEEEEE
Confidence 4577777 999999999999998875
No 18
>KOG3202|consensus
Probab=35.16 E-value=2e+02 Score=29.13 Aligned_cols=67 Identities=12% Similarity=0.141 Sum_probs=42.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhHH
Q psy187 340 VTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVM-----------------WWSSIEFVVVLLASTL 402 (493)
Q Consensus 340 ke~Ld~LE~~L~rL~~~L~~I~~EQ~ylR~RE~r~R~t~ESTNsRV~-----------------~wSIlqIlVLI~vai~ 402 (493)
++.++.|+.++.++..+...|-.|..-+-.--.-+-+-.+.|.+|+- .|+++.+++.+++-++
T Consensus 151 De~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~~~il~l~~~~~lvv 230 (235)
T KOG3202|consen 151 DEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCSQWCAILLLVGLLLLVV 230 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Confidence 46788888888888877777766555444444444444444444432 3777777777776677
Q ss_pred HHHH
Q psy187 403 QVYI 406 (493)
Q Consensus 403 QV~y 406 (493)
+||.
T Consensus 231 ~i~~ 234 (235)
T KOG3202|consen 231 IIFI 234 (235)
T ss_pred HHhc
Confidence 7664
No 19
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=33.32 E-value=2.3e+02 Score=22.75 Aligned_cols=45 Identities=16% Similarity=0.229 Sum_probs=30.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy187 342 VMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVM 386 (493)
Q Consensus 342 ~Ld~LE~~L~rL~~~L~~I~~EQ~ylR~RE~r~R~t~ESTNsRV~ 386 (493)
+++.|...|..|...+..+..+..-++.--..-.+-+.-.|.|+-
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777778888888888877777777655555555555666653
No 20
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=31.99 E-value=75 Score=25.32 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=28.2
Q ss_pred hHHHHHHhhccCCCCCCCchhhHHHHHHhHHHH
Q psy187 426 LSEAMVESMSRDPIAPILWQPHLDALDRRVKII 458 (493)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (493)
|=+.+-.|+..++-.+.+.+.|.+.|+||+..+
T Consensus 11 Lve~LwdSL~~~~~~~~~~~~~~~el~~R~~~~ 43 (63)
T TIGR02574 11 LVEDIWDSIAAEAKHLILTEAQKAELDRRLADY 43 (63)
T ss_pred HHHHHHHHhccCcccCCCCHHHHHHHHHHHHHH
Confidence 456677899988888889999999999999765
No 21
>PF11278 DUF3079: Protein of unknown function (DUF3079); InterPro: IPR021430 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=30.68 E-value=23 Score=27.63 Aligned_cols=18 Identities=33% Similarity=0.868 Sum_probs=15.6
Q ss_pred ecccccCCCCccccCCCc
Q psy187 115 KCSYYCDTSHAVCGNPDM 132 (493)
Q Consensus 115 ~c~y~C~~~~~~cg~~~~ 132 (493)
-|.-||....+.||+++.
T Consensus 18 GCD~YC~a~~l~CGNGs~ 35 (52)
T PF11278_consen 18 GCDRYCPADSLACGNGSS 35 (52)
T ss_pred ccccccChhhhcccCCcc
Confidence 588899999999999763
No 22
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=28.70 E-value=1.5e+02 Score=28.04 Aligned_cols=82 Identities=11% Similarity=0.189 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhccccccccCccchHHHHHHhhccCCCCCCCchhhHHHHHHhHHHHHHHHHH
Q psy187 385 VMWWSSIEFVVVLLASTLQVYIVKNFFASRNERQFHNGPKKLSEAMVESMSRDPIAPILWQPHLDALDRRVKIILQAIRH 464 (493)
Q Consensus 385 V~~wSIlqIlVLI~vai~QV~yLKrFFkkKK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (493)
|....++-+++++++.+++..=++++-++-+.-.--.+...|-+.+.+-... -=-.+..++++++|++.+-+.++.
T Consensus 3 i~i~l~~l~iilli~~~~~~~kl~kl~r~Y~~lm~g~~~~~lE~~l~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~ 78 (151)
T PF14584_consen 3 IIIGLLVLVIILLILIIILNIKLRKLKRRYDALMRGKDGKNLEDLLNELFDQ----IDELKEELEELEKRIEELEEKLRN 78 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455566666666777777777766544322122233565555432221 112456788999999999999999
Q ss_pred HHHhhC
Q psy187 465 CIEVRL 470 (493)
Q Consensus 465 ~~~~~~ 470 (493)
|+.+-|
T Consensus 79 ~~~kvg 84 (151)
T PF14584_consen 79 CVQKVG 84 (151)
T ss_pred ccceEE
Confidence 987644
No 23
>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.
Probab=27.80 E-value=32 Score=23.67 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=8.7
Q ss_pred HHHHHHHhhccccccccCccc
Q psy187 405 YIVKNFFASRNERQFHNGPKK 425 (493)
Q Consensus 405 ~yLKrFFkkKK~~~~~~~~~~ 425 (493)
-.|.+|++++|.+.....||.
T Consensus 6 ~SLqRFLeKRK~R~~~~~PY~ 26 (27)
T PF09425_consen 6 ASLQRFLEKRKDRLAAKSPYQ 26 (27)
T ss_dssp HHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHhhccCCCCC
Confidence 368999999999998888764
No 24
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=27.08 E-value=3.1e+02 Score=27.45 Aligned_cols=22 Identities=18% Similarity=0.522 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q psy187 387 WWSSIEFVVVLLASTLQVYIVK 408 (493)
Q Consensus 387 ~wSIlqIlVLI~vai~QV~yLK 408 (493)
||.++-+++++++-++=|+++|
T Consensus 228 ~~~~~~i~~v~~~Fi~mvl~ir 249 (251)
T PF09753_consen 228 CWTWLMIFVVIIVFIMMVLFIR 249 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHhe
Confidence 7777766665555555555544
No 25
>PF13280 WYL: WYL domain
Probab=27.01 E-value=18 Score=32.22 Aligned_cols=66 Identities=23% Similarity=0.342 Sum_probs=39.9
Q ss_pred hHHHHhccccccccceeeeec-cCCCceeecccCCCCCCcccCCCcccccccccccchhhhhhhhhhcCCc
Q psy187 5 VLDFLIGNMDRHHYETFKAFD-NETFPIHLVKHSRFPRDQQTLPNHFYFTDYERHNSEIATFHLDRLLGFR 74 (493)
Q Consensus 5 ~~~~~~~~~~~~~y~~f~~~~-~~~~~~a~fkp~~~~r~~~~~~~~~~~~~~~rhn~ei~afhl~~~l~~~ 74 (493)
+|+.|.-+|....-=.|.--. -.++.+-.+-|-+--- ..+.+|..||++.+.++..|.||||.+.+
T Consensus 2 ~l~~l~~Ai~~~~~i~~~Y~~~~~~~~~~~v~P~~l~~----~~~~~Yl~~~~~~~~~~r~frldrI~~i~ 68 (172)
T PF13280_consen 2 VLETLLQAIREKRQIRFDYRSASSEGKERRVDPYRLYY----YNGRWYLIAYDREREEFRTFRLDRIRSIE 68 (172)
T ss_pred hHHHHHHHHHCCCEEEEEEECCCCCcEEEEEEEEEEEE----ECCEEEEEEEeccccccccccccceEEEE
Confidence 344444455444432333111 1222344555655332 35679999999999999999999996644
No 26
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=26.69 E-value=65 Score=30.72 Aligned_cols=37 Identities=8% Similarity=0.019 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhc
Q psy187 378 AEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFFASR 414 (493)
Q Consensus 378 ~ESTNsRV~~wSIlqIlVLI~vai~QV~yLKrFFkkK 414 (493)
..=.|-|+.+++++.++++++++++|++.+-+--.++
T Consensus 24 ~~YI~P~~~~~~~~a~i~l~ilai~q~~~~~~~~~~~ 60 (182)
T PF09323_consen 24 LLYIHPRYIPLLYFAAILLLILAIVQLWRWFRPKRRK 60 (182)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3346789999999999999999999999766655554
No 27
>PRK15396 murein lipoprotein; Provisional
Probab=25.10 E-value=3.2e+02 Score=23.21 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=36.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy187 341 TVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVM 386 (493)
Q Consensus 341 e~Ld~LE~~L~rL~~~L~~I~~EQ~ylR~RE~r~R~t~ESTNsRV~ 386 (493)
.+++.|...+..|...+..+..+.+-++.--..-.+-++..|.|+-
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlD 70 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLD 70 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888888888888776666677777777764
No 28
>PRK00523 hypothetical protein; Provisional
Probab=24.95 E-value=1.8e+02 Score=24.53 Aligned_cols=47 Identities=19% Similarity=0.494 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhccccccccCccchHHHHHH----hhccCC
Q psy187 387 WWSSIEFVVVLLASTLQVYIVKNFFASRNERQFHNGPKKLSEAMVE----SMSRDP 438 (493)
Q Consensus 387 ~wSIlqIlVLI~vai~QV~yLKrFFkkKK~~~~~~~~~~~~~~~~~----~~~~~~ 438 (493)
.|-++-++.+++=.+.=.|.-|++|++ .+...| +++|-|.. +|.+.|
T Consensus 6 l~I~l~i~~li~G~~~Gffiark~~~k----~l~~NP-pine~mir~M~~QMGqKP 56 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKKMFKK----QIRENP-PITENMIRAMYMQMGRKP 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCc-CCCHHHHHHHHHHhCCCc
Confidence 344445555555556667777888887 444333 37776554 445554
No 29
>PRK01844 hypothetical protein; Provisional
Probab=23.02 E-value=2e+02 Score=24.18 Aligned_cols=46 Identities=17% Similarity=0.449 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhccccccccCccchHHHHHH----hhccCC
Q psy187 388 WSSIEFVVVLLASTLQVYIVKNFFASRNERQFHNGPKKLSEAMVE----SMSRDP 438 (493)
Q Consensus 388 wSIlqIlVLI~vai~QV~yLKrFFkkKK~~~~~~~~~~~~~~~~~----~~~~~~ 438 (493)
|-++-++.+++-.++=.|.-|++|++ .+...| +++|-|.. +|.+.|
T Consensus 6 ~I~l~I~~li~G~~~Gff~ark~~~k----~lk~NP-pine~mir~Mm~QMGqkP 55 (72)
T PRK01844 6 GILVGVVALVAGVALGFFIARKYMMN----YLQKNP-PINEQMLKMMMMQMGQKP 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCC-CCCHHHHHHHHHHhCCCc
Confidence 34444555555556667777888877 344443 47776554 445554
No 30
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=22.16 E-value=6.9e+02 Score=25.38 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=22.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy187 341 TVMTQMESSTQEIHKSLNTIIDYQTHHRLRE 371 (493)
Q Consensus 341 e~Ld~LE~~L~rL~~~L~~I~~EQ~ylR~RE 371 (493)
++++.||.+|.+++..+..++....-.+.|-
T Consensus 15 ~~L~rle~qi~q~~~~~~~~qs~l~~~~~r~ 45 (251)
T COG5415 15 ADLSRLESQIHQLDVALKKSQSILSQWQSRL 45 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888877777666555443
No 31
>KOG4767|consensus
Probab=21.82 E-value=46 Score=33.08 Aligned_cols=30 Identities=33% Similarity=0.584 Sum_probs=20.3
Q ss_pred hhhhccccccCCCCeeeeeecccccCCCCcc
Q psy187 96 GELLKTFFVSPGNNICFHGKCSYYCDTSHAV 126 (493)
Q Consensus 96 ~~l~~t~~~~~~~~~C~y~~c~y~C~~~~~~ 126 (493)
..|+.+-| +-.----|||+||=-||+.|+.
T Consensus 180 GrLnq~s~-~i~r~GvfYGqCSEiCGanHsf 209 (231)
T KOG4767|consen 180 GRLNQVSF-SIQREGVFYGQCSEICGANHSF 209 (231)
T ss_pred ceeeeeEE-EeccCceEeehhhHhhCCCccc
Confidence 35555555 4444557999998888887764
No 32
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=21.30 E-value=3.7e+02 Score=24.06 Aligned_cols=44 Identities=9% Similarity=0.092 Sum_probs=31.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy187 342 VMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERV 385 (493)
Q Consensus 342 ~Ld~LE~~L~rL~~~L~~I~~EQ~ylR~RE~r~R~t~ESTNsRV 385 (493)
.++.+.+.++..-+++..+..+|+-.-.+=...-.+..++|.|+
T Consensus 54 qI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 54 QINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666777777778888777777777777777888776
No 33
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=21.22 E-value=4.8e+02 Score=21.61 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy187 355 KSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWS 389 (493)
Q Consensus 355 ~~L~~I~~EQ~ylR~RE~r~R~t~ESTNsRV~~wS 389 (493)
+.++.+...-.-+......++..+...+.++.|-.
T Consensus 31 e~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~ 65 (89)
T PF00957_consen 31 EKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRN 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666667766666665433
No 34
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=21.11 E-value=94 Score=31.88 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=19.8
Q ss_pred CCCCCchhhHHHHHHhHHHHHHH
Q psy187 439 IAPILWQPHLDALDRRVKIILQA 461 (493)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~ 461 (493)
++++|+..-++||-+|+..+++.
T Consensus 213 L~~llt~~Ei~Al~~R~~~Ll~~ 235 (253)
T TIGR03843 213 LAELLTPEEVAALRRRVDRLLET 235 (253)
T ss_pred HHHhCCHHHHHHHHHHHHHHHhC
Confidence 56889999999999999988753
No 35
>PHA02148 hypothetical protein
Probab=20.95 E-value=5.7e+02 Score=22.65 Aligned_cols=64 Identities=13% Similarity=0.026 Sum_probs=53.1
Q ss_pred cchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy187 341 TVMTQMESSTQEIHKSLNTI-IDYQTHHRLREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQV 404 (493)
Q Consensus 341 e~Ld~LE~~L~rL~~~L~~I-~~EQ~ylR~RE~r~R~t~ESTNsRV~~wSIlqIlVLI~vai~QV 404 (493)
+-..++|+++-.=+..|.++ ++-|+-++..|..-+...++-.-.+.-.|.=|.+|-=.+-+.|+
T Consensus 37 E~FK~iE~RIA~D~~~L~~~A~~R~NEL~~HE~Air~~M~~HS~~M~~LS~~~~LiSDS~K~~~~ 101 (110)
T PHA02148 37 ELFKKIEERIAHDQTRLEELAKSRENELRRHEAAIRLAMDSHSIKMDDLSLQEALISDSLKGGKY 101 (110)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 44567777777777777776 66788899999999999999999999999999998877777775
No 36
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=20.70 E-value=5.9e+02 Score=24.33 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy187 347 ESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVMWWSSI 391 (493)
Q Consensus 347 E~~L~rL~~~L~~I~~EQ~ylR~RE~r~R~t~ESTNsRV~~wSIl 391 (493)
..+.+.+...+..++++..-+.....+....++....|++|..+.
T Consensus 56 ~~~~~~l~~~l~~~~~el~~le~~k~~id~~A~~~~~~~~w~gl~ 100 (180)
T PF04678_consen 56 NSRERQLRKRLEELRQELAPLEKIKQEIDEKAEKRARRLLWGGLA 100 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788888888888888888888888888888888865543
Done!