Query psy187
Match_columns 493
No_of_seqs 294 out of 934
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 18:25:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_Q JAZ1 incomplete degron 32.9 15 0.0005 23.3 0.9 19 406-424 4-22 (22)
2 1mmc_A AC-AMP2, antimicrobial 31.6 7.2 0.00025 26.4 -0.7 22 108-129 6-30 (30)
3 1s8k_A Toxin BMKK4; alpha/beta 31.4 12 0.00042 25.1 0.4 12 109-122 18-29 (31)
4 1jcd_A Major outer membrane li 28.8 1.9E+02 0.0063 21.8 6.6 45 341-385 4-48 (52)
5 1gl2_D Syntaxin 8, vesicle tra 28.2 1.8E+02 0.006 22.0 6.7 47 340-386 8-54 (65)
6 3hd7_B Syntaxin-1A; membrane p 27.6 2.7E+02 0.0093 23.3 9.6 20 341-360 21-40 (109)
7 3cg7_A CRN-4, cell death-relat 25.2 18 0.00063 35.7 0.7 20 111-131 265-284 (308)
8 2nps_D Syntaxin-6; vesicle fus 24.2 2.3E+02 0.0079 22.4 7.0 47 340-386 18-64 (82)
9 1olm_A SEC14-like protein 2; l 22.2 57 0.0019 32.9 3.6 22 308-329 364-385 (403)
10 1n7s_D SNAP-25A; neuronal snar 19.8 2.9E+02 0.0099 20.8 6.5 47 340-386 9-55 (66)
No 1
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=32.93 E-value=15 Score=23.26 Aligned_cols=19 Identities=21% Similarity=0.454 Sum_probs=16.0
Q ss_pred HHHHHHhhccccccccCcc....
Q psy187 406 IVKNFFASRNERQFHNGPK.... 424 (493)
Q Consensus 406 yLKrFFkkKK~~~~~~~~~.... 424 (493)
.|++|++++|.+.....||
T Consensus 4 SLqRFleKRk~R~~~~~PY.... 22 (22)
T 3ogk_Q 4 SLHRFLEKRKDRVTSKAPYxxxx 26 (26)
T ss_pred hHHHHHHHHHHHhhccCCC....
Confidence 5899999999988877765
No 2
>1mmc_A AC-AMP2, antimicrobial peptide 2; antifungal antimicrobial, chitin-binding; NMR {Amaranthus caudatus} SCOP: g.3.1.2 PDB: 1zuv_A 1zwu_A* 1znt_A*
Probab=31.63 E-value=7.2 Score=26.41 Aligned_cols=22 Identities=36% Similarity=0.970 Sum_probs=17.1
Q ss_pred CCeeeee-ecc-c-ccCCCCccccC
Q psy187 108 NNICFHG-KCS-Y-YCDTSHAVCGN 129 (493)
Q Consensus 108 ~~~C~y~-~c~-y-~C~~~~~~cg~ 129 (493)
++.|+-+ .|| | ||++...-||.
T Consensus 6 ~~~Cp~~~CCS~~G~CGtt~~yC~~ 30 (30)
T 1mmc_A 6 RGRCPSGMCCSQFGYCGKGPKYCGR 30 (30)
T ss_dssp SSCCSTTCEECTTSCEESSHHHHCC
T ss_pred CCcCCCCCCCCCCCcccCcchhhCC
Confidence 3678888 677 6 99999888874
No 3
>1s8k_A Toxin BMKK4; alpha/beta scaffold; HET: PCA; NMR {Mesobuthus martensii}
Probab=31.43 E-value=12 Score=25.09 Aligned_cols=12 Identities=50% Similarity=1.298 Sum_probs=9.2
Q ss_pred CeeeeeecccccCC
Q psy187 109 NICFHGKCSYYCDT 122 (493)
Q Consensus 109 ~~C~y~~c~y~C~~ 122 (493)
..|-||+| ||++
T Consensus 18 ~~c~yg~c--yc~~ 29 (31)
T 1s8k_A 18 DRCSYGTC--YCKT 29 (31)
T ss_dssp EEEETTEE--EESC
T ss_pred ccccCceE--Eeec
Confidence 46999999 6765
No 4
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=28.76 E-value=1.9e+02 Score=21.75 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=30.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy187 341 TVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERV 385 (493)
Q Consensus 341 e~Ld~LE~~L~rL~~~L~~I~~EQ~ylR~RE~r~R~t~ESTNsRV 385 (493)
.+++.|...|..|...+..+..+...++.--..-.+-+...|.|+
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777788888888888887777777765555555555556654
No 5
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=28.22 E-value=1.8e+02 Score=21.98 Aligned_cols=47 Identities=9% Similarity=-0.038 Sum_probs=41.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy187 340 VTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVM 386 (493)
Q Consensus 340 ke~Ld~LE~~L~rL~~~L~~I~~EQ~ylR~RE~r~R~t~ESTNsRV~ 386 (493)
.+.++.|...|.++......|-.|.......=.+.-+.+++++.++.
T Consensus 8 D~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~ 54 (65)
T 1gl2_D 8 DAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLR 54 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999988888888888888888764
No 6
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=27.56 E-value=2.7e+02 Score=23.28 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=11.0
Q ss_pred cchhhHHHHHHHHHHHHHHH
Q psy187 341 TVMTQMESSTQEIHKSLNTI 360 (493)
Q Consensus 341 e~Ld~LE~~L~rL~~~L~~I 360 (493)
+.+..||.++..|.+...++
T Consensus 21 ~eI~~Ie~~I~eL~~iF~dl 40 (109)
T 3hd7_B 21 SEIIKLENSIRELHDMFMDM 40 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44566666666555554444
No 7
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=25.24 E-value=18 Score=35.71 Aligned_cols=20 Identities=35% Similarity=0.861 Sum_probs=16.3
Q ss_pred eeeeecccccCCCCccccCCC
Q psy187 111 CFHGKCSYYCDTSHAVCGNPD 131 (493)
Q Consensus 111 C~y~~c~y~C~~~~~~cg~~~ 131 (493)
=-||+| -||+.+.-+||.-+
T Consensus 265 ~~~~~~-~~c~~~~~~~~~~~ 284 (308)
T 3cg7_A 265 EMYGVC-RYCRKGMDVCGTSH 284 (308)
T ss_dssp GGTTBC-TTTCCBTTTTTSSC
T ss_pred hhcccC-CcCCCccccccccc
Confidence 358899 89999999997443
No 8
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=24.20 E-value=2.3e+02 Score=22.42 Aligned_cols=47 Identities=9% Similarity=-0.035 Sum_probs=41.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy187 340 VTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVM 386 (493)
Q Consensus 340 ke~Ld~LE~~L~rL~~~L~~I~~EQ~ylR~RE~r~R~t~ESTNsRV~ 386 (493)
.+.++.|...|.+|......|-.|......-=...-+.+++++.|+.
T Consensus 18 D~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~ 64 (82)
T 2nps_D 18 DEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLD 64 (82)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999988888888888888887764
No 9
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=22.21 E-value=57 Score=32.89 Aligned_cols=22 Identities=23% Similarity=0.169 Sum_probs=19.6
Q ss_pred cccCcccccccEEEEEEEEeCC
Q psy187 308 LLNNEFSTYSHKVVYMDFQVGD 329 (493)
Q Consensus 308 ~FdN~fSt~s~K~V~FdI~VG~ 329 (493)
+|||++|....|.|.+.+.+..
T Consensus 364 ~fdNs~S~~~~k~l~y~v~v~~ 385 (403)
T 1olm_A 364 RFDNTYSFIHAKKVNFTVEVLL 385 (403)
T ss_dssp EEECTTCCCCSEEEEEEEEEEC
T ss_pred EEeccccceeceEEEEEEEEeC
Confidence 3999999999999999999865
No 10
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=19.78 E-value=2.9e+02 Score=20.79 Aligned_cols=47 Identities=6% Similarity=-0.007 Sum_probs=40.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy187 340 VTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVM 386 (493)
Q Consensus 340 ke~Ld~LE~~L~rL~~~L~~I~~EQ~ylR~RE~r~R~t~ESTNsRV~ 386 (493)
.+.++.|...|.++......|-.|...+...=.+.-..+++++.++.
T Consensus 9 D~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~ 55 (66)
T 1n7s_D 9 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRID 55 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45789999999999999999999999988888888888888888774
Done!