RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy187
(493 letters)
>gnl|CDD|219144 pfam06702, DUF1193, Protein of unknown function (DUF1193). This
family represents the C-terminus of several hypothetical
eukaryotic proteins of unknown function. Family members
contain two conserved motifs: DRHHYE and QCC, as well as
a number of conserved cysteine residues.
Length = 221
Score = 283 bits (726), Expect = 7e-94
Identities = 115/208 (55%), Positives = 130/208 (62%), Gaps = 48/208 (23%)
Query: 102 FFVSPGNNICFHGKCSYYCDTSHAVCGNPDMLEGSYAAFLPDKSVAERKVWRHPWRRSYH 161
FF SP NN CF+GKCSYYC T HAVCGNPDMLEGS AAFLPD S+A RK WR PWRRSY
Sbjct: 1 FFTSPANNTCFYGKCSYYCKTEHAVCGNPDMLEGSLAAFLPDLSLAPRKKWRSPWRRSYS 60
Query: 162 KRRKAQWEHDADYCDIVREIPPYNQGRRLLDLMDMAVLDFLIGNMDRHHYETFKVSTDAD 221
+R+ A+WE TD +
Sbjct: 61 RRKLAEWE------------------------------------------------TDPN 72
Query: 222 YCDIVREIPPYNQGRRLLDLMDMAVLDFLIGNMDRHHYETFKAFDNETFPIHLDHGRGFG 281
YCD V++ PPY+ G RLLDL+DMA+ DFLIGNMDRHHYETF+ F NETF +HLD+GRGFG
Sbjct: 73 YCDTVKQTPPYDSGTRLLDLIDMAIFDFLIGNMDRHHYETFEKFGNETFLLHLDNGRGFG 132
Query: 282 RAYHDELSILAPILQCCLIRERTLNTLL 309
R HDELSILAP+ QCCLIR T L
Sbjct: 133 RPSHDELSILAPLYQCCLIRRSTWLRLQ 160
Score = 76.7 bits (189), Expect = 6e-16
Identities = 26/51 (50%), Positives = 36/51 (70%)
Query: 417 RQFHNGPKKLSEAMVESMSRDPIAPILWQPHLDALDRRVKIILQAIRHCIE 467
+ +LSE M ES+S DP+AP+L +PHL+ALDRR+ I+LQ + CIE
Sbjct: 160 QLLSLPGGRLSEVMRESLSHDPLAPLLTEPHLEALDRRLLIVLQTVERCIE 210
Score = 74.0 bits (182), Expect = 5e-15
Identities = 25/33 (75%), Positives = 29/33 (87%)
Query: 1 MDMAVLDFLIGNMDRHHYETFKAFDNETFPIHL 33
+DMA+ DFLIGNMDRHHYETF+ F NETF +HL
Sbjct: 93 IDMAIFDFLIGNMDRHHYETFEKFGNETFLLHL 125
>gnl|CDD|198457 cd10314, FAM20_C, C-terminal putative kinase domain of FAM20
(family with sequence similarity 20) proteins. This
family contains the C-terminal domain of FAM20A, -B, -C
and related proteins. FAM20A may participate in enamel
development and gingival homeostasis, FAM20B in
proteoglycan production, and FAM20C in bone development.
FAM20B is a xylose kinase that may regulate the number
of glycosaminoglycan chains by phosphorylating the
xylose residue in the glycosaminoglycan-protein linkage
region of proteoglycans. FAM20C, also called Dentin
Matrix Protein 4, is abundant in the dentin matrix, and
may participate in the differentiation of mesenchymal
precursor cells into functional odontoblast-like cells.
Mutations in FAM20C are associated with lethal
Osteosclerotic Bone Dysplasia (Raine Syndrome), and
mutations in FAM20A with Amelogenesis imperfecta (AI)
and Gingival Hyperplasia Syndrome. The C-terminal
domains of members of this family are putative kinase
domains, based on mutagenesis of the C-terminal domain
of Drosophila Four-Jointed, a related Golgi kinase. This
domain family is also known as DUF1193.
Length = 209
Score = 275 bits (705), Expect = 8e-91
Identities = 110/208 (52%), Positives = 127/208 (61%), Gaps = 51/208 (24%)
Query: 103 FVSPGNNICFHGKCSYYCDTSHAVCGNPDMLEGSYAAFLPDKSVAERKVWRHPWRRSYHK 162
F+SP NN CF+GKC YYC T AVCGNPD+LEGS AFLPD S+ K WRHPWRR+YHK
Sbjct: 1 FISPANNTCFYGKC-YYCKTEEAVCGNPDLLEGSLTAFLPDLSLL--KKWRHPWRRTYHK 57
Query: 163 RRKAQWEHDADYCDIVREIPPYNQGRRLLDLMDMAVLDFLIGNMDRHHYETFKVSTDADY 222
R+KA+WE D DY
Sbjct: 58 RKKAEWE------------------------------------------------VDPDY 69
Query: 223 CDIVREIPPYNQGRRLLDLMDMAVLDFLIGNMDRHHYETFKAFDNETFPIHLDHGRGFGR 282
CD V++ PPY+ GRRLLDL+DMA+ DFLIGNMDRHHYETF+ F NETF IHLD+G+ FG
Sbjct: 70 CDKVKKTPPYDSGRRLLDLIDMAIFDFLIGNMDRHHYETFEKFGNETFLIHLDNGKSFGN 129
Query: 283 AYHDELSILAPILQCCLIRERTLNTLLN 310
HDELSILAP+ QCCLIR+ T L
Sbjct: 130 PSHDELSILAPLYQCCLIRKSTWLRLQL 157
Score = 80.4 bits (199), Expect = 2e-17
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 419 FHNGPKKLSEAMVESMSRDPIAPILWQPHLDALDRRVKIILQAIRHCIEVR 469
G LS+ + ES+S DP++P+L +PHLDALDRR+ I+L + CIE
Sbjct: 158 LAKGGGSLSDLLRESLSHDPLSPVLTEPHLDALDRRLLIVLATVEDCIEKN 208
Score = 75.0 bits (185), Expect = 2e-15
Identities = 26/33 (78%), Positives = 29/33 (87%)
Query: 1 MDMAVLDFLIGNMDRHHYETFKAFDNETFPIHL 33
+DMA+ DFLIGNMDRHHYETF+ F NETF IHL
Sbjct: 89 IDMAIFDFLIGNMDRHHYETFEKFGNETFLIHL 121
>gnl|CDD|198458 cd10467, FAM20_C_like, C-terminal putative kinase domain of FAM20
(family with sequence similarity 20), Drosophila
Four-jointed (Fj), and related proteins. Drosophila Fj
is a Golgi kinase that phosphorylates Ser or Thr
residues within extracellular cadherin domains of a
transmembrane receptor Fat and its ligand, Dachsous
(Ds). The Fat signaling pathway regulates growth, gene
expression, and planar cell polarity (PCP). Defects from
mutation in the Drosophila fj gene include loss of the
intermediate leg joint, and a PCP defect in the eye.
Fjx1, the murine homologue of Fj, has been shown to be
involved in both the Fat and Hippo signaling pathways,
these two pathways intersect at multiple points. The
Hippo pathway is important in organ size control and in
cancer. FAM20B is a xylose kinase that may regulate the
number of glycosaminoglycan chains by phosphorylating
the xylose residue in the glycosaminoglycan-protein
linkage region of proteoglycans. This domain has
homology to a kinase-active site, mutation of three
conserved Asp residues at the Drosophila Fj putative
active site abolished its ability to phosphorylate Ft
and Ds cadherin domains. FAM20A may participate in
enamel development and gingival homeostasis, FAM20B in
proteoglycan production, and FAM20C in bone development.
FAM20C, also called Dentin Matrix Protein 4, is abundant
in the dentin matrix, and may participate in the
differentiation of mesenchymal precursor cells into
functional odontoblast-like cells. Mutations in FAM20C
are associated with lethal Osteosclerotic Bone Dysplasia
(Raine Syndrome), and mutations in FAM20A with
Amelogenesis imperfecta (AI) and Gingival Hyperplasia
Syndrome. This model includes the FAM20_C domain family,
previously known as DUF1193; FAM20_C appears to be
homologous to the catalytic domain of the
phosphoinositide 3-kinase (PI3K)-like family.
Length = 210
Score = 263 bits (675), Expect = 3e-86
Identities = 102/215 (47%), Positives = 123/215 (57%), Gaps = 48/215 (22%)
Query: 103 FVSPGNNICFHGKCSYYCDTSHAVCGNPDMLEGSYAAFLPDKSVAERKVWRHPWRRSYHK 162
F SP NN CF+G C YYC T A CGNPD +EGS +FLPD + RK WRHPW+R+Y +
Sbjct: 1 FFSPANNTCFYGGCGYYCKTEEAACGNPDQIEGSLTSFLPDLLLLLRKKWRHPWQRTYTE 60
Query: 163 RRKAQWEHDADYCDIVREIPPYNQGRRLLDLMDMAVLDFLIGNMDRHHYETFKVSTDADY 222
R+KA+WE D DY
Sbjct: 61 RKKAEWE------------------------------------------------VDLDY 72
Query: 223 CDIVREIPPYNQGRRLLDLMDMAVLDFLIGNMDRHHYETFKAFDNETFPIHLDHGRGFGR 282
CD V+++PPY+ GRRLLDL+DMA+ DFLIGNMDRHHYE F+ NE F IHLD+G+GFGR
Sbjct: 73 CDEVKKLPPYDSGRRLLDLIDMAIFDFLIGNMDRHHYELFELQWNEGFLIHLDNGKGFGR 132
Query: 283 AYHDELSILAPILQCCLIRERTLNTLLNNEFSTYS 317
HDELSILAP+ QCC+IR+ T LL
Sbjct: 133 PSHDELSILAPLYQCCVIRKSTWERLLLLHRGGGV 167
Score = 72.7 bits (179), Expect = 1e-14
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 417 RQFHNGPKKLSEAMVESMSRDPIAPILWQPHLDALDRRVKIILQAIRHCIE 467
H G LS + ES+ DP+ P+L +PHL ALDRR+ I+L + CIE
Sbjct: 159 LLLHRGGGVLSRLLRESLRHDPLLPVLTEPHLQALDRRLDIVLATVEKCIE 209
Score = 69.6 bits (171), Expect = 1e-13
Identities = 23/33 (69%), Positives = 26/33 (78%)
Query: 1 MDMAVLDFLIGNMDRHHYETFKAFDNETFPIHL 33
+DMA+ DFLIGNMDRHHYE F+ NE F IHL
Sbjct: 92 IDMAIFDFLIGNMDRHHYELFELQWNEGFLIHL 124
>gnl|CDD|198462 cd10471, FAM20C_C, C-terminal putative kinase domain of FAM20C
(also known as Dentin Matrix Protein 4, DMP4). Mouse
DMP4 is abundant in the dentin matrix, and is expressed
in high levels in odontoblasts. These latter cells
synthesize various nucleators or inhibitors of
mineralization. The in vivo role of DMP4 in
dentinogenesis is unclear. However, gain- and
loss-of-function experiments suggest that it
participates in the differentiation of mesenchymal
precursor cells into functional odontoblast-like cells.
In addition to this domain, DMP4 contains a Greek key
calcium-binding domain. Human FAM20C participates in
bone development; mutations in FAM20C are associated
with lethal Osteosclerotic Bone Dysplasia (Raine
Syndrome), an autosomal recessive disorder in which
affected individuals die within days or weeks of birth,
usually due to thoratic malformation resulting in
respiratory failure. The C-terminal domain of FAM20C is
a putative kinase domain, based on mutagenesis of the
C-terminal domain of Drosophila Four-Jointed, a related
Golgi kinase. This subfamily belongs to the FAM20_C
(also known as DUF1193) domain family.
Length = 212
Score = 243 bits (622), Expect = 2e-78
Identities = 107/202 (52%), Positives = 129/202 (63%), Gaps = 48/202 (23%)
Query: 103 FVSPGNNICFHGKCSYYCDTSHAVCGNPDMLEGSYAAFLPDKSVAERKVWRHPWRRSYHK 162
F+SP NNICF+G+CSYYC T HA+CG PD +EGS AAFLPD S+A+RK WR+PWRRSYHK
Sbjct: 1 FISPANNICFYGECSYYCSTEHALCGKPDQIEGSLAAFLPDLSLAKRKTWRNPWRRSYHK 60
Query: 163 RRKAQWEHDADYCDIVREIPPYNQGRRLLDLMDMAVLDFLIGNMDRHHYETFKVSTDADY 222
R+KA+WE D DY
Sbjct: 61 RKKAEWE------------------------------------------------VDPDY 72
Query: 223 CDIVREIPPYNQGRRLLDLMDMAVLDFLIGNMDRHHYETFKAFDNETFPIHLDHGRGFGR 282
C+ V++ PPY+ G R+LD+MDM V DFL+GNMDRHHYETF+ F NETF IHLD+GRGFG+
Sbjct: 73 CEEVKQTPPYDSGTRILDIMDMTVFDFLMGNMDRHHYETFEKFGNETFIIHLDNGRGFGK 132
Query: 283 AYHDELSILAPILQCCLIRERT 304
HDELSIL P+ QCC IR+ T
Sbjct: 133 YSHDELSILVPLTQCCRIRKST 154
Score = 64.2 bits (156), Expect = 7e-12
Identities = 26/33 (78%), Positives = 28/33 (84%)
Query: 1 MDMAVLDFLIGNMDRHHYETFKAFDNETFPIHL 33
MDM V DFL+GNMDRHHYETF+ F NETF IHL
Sbjct: 92 MDMTVFDFLMGNMDRHHYETFEKFGNETFIIHL 124
Score = 63.1 bits (153), Expect = 2e-11
Identities = 26/44 (59%), Positives = 36/44 (81%)
Query: 425 KLSEAMVESMSRDPIAPILWQPHLDALDRRVKIILQAIRHCIEV 468
KLS M ES+ RD +APIL+QPHL+ALDRR++I+L+A+ C+E
Sbjct: 167 KLSLLMAESLQRDKLAPILYQPHLEALDRRLRIVLKAVSDCVEK 210
>gnl|CDD|198460 cd10469, FAM20A_C, C-terminal putative kinase domain of FAM20A.
Human FAM20A may play a fundamental role in enamel
development and gingival homeostasis as mutations in
FAM20A may underlie the pathogenesis of the autosomal
recessive Amelogenesis imperfecta (AI) and Gingival
Hyperplasia Syndrome. It is expressed in ameloblasts and
gingivae. AI refers to a heterogeneous group of
disorders of biomineralization caused by a lack of
normal enamel formation. Mouse FAM20A is a secreted
protein and the gene encoding it is differentially
expressed in hematopoietic cells undergoing myeloid
differentiation. This protein has also been associated
with growth disorder in mice. The C-terminal domain of
FAM20A is a putative kinase domain, based on mutagenesis
of the C-terminal domain of Drosophila Four-Jointed, a
related Golgi kinase. This subfamily belongs to the
FAM20_C (also known as DUF1193) domain family.
Length = 217
Score = 194 bits (493), Expect = 4e-59
Identities = 88/203 (43%), Positives = 114/203 (56%), Gaps = 48/203 (23%)
Query: 103 FVSPGNNICFHGKCSYYCDTSHAVCGNPDMLEGSYAAFLPDKSVAERKVWRHPWRRSYHK 162
F SP +N+CF KC Y C T +AVCGNP +LEGS +AFLP ++A R +PW RSY
Sbjct: 1 FNSPASNVCFFAKCPYMCKTEYAVCGNPHLLEGSLSAFLPSLNLAPRLSIPNPWIRSYTF 60
Query: 163 RRKAQWEHDADYCDIVREIPPYNQGRRLLDLMDMAVLDFLIGNMDRHHYETFKVSTDADY 222
K +WE + P Y
Sbjct: 61 AGKEEWE-----------VNPL-------------------------------------Y 72
Query: 223 CDIVREIPPYNQGRRLLDLMDMAVLDFLIGNMDRHHYETFKAFDNETFPIHLDHGRGFGR 282
CD V+EI PYN G RLL+++DMA+ DFLIGNMDRHHYE F F ++ F +HLD+ RGFG+
Sbjct: 73 CDTVKEIYPYNSGNRLLNIIDMAIFDFLIGNMDRHHYEMFTKFGDDGFLLHLDNARGFGK 132
Query: 283 AYHDELSILAPILQCCLIRERTL 305
HDE+SIL+P+ QCC+I++ TL
Sbjct: 133 HSHDEISILSPLSQCCIIKKSTL 155
Score = 58.8 bits (142), Expect = 6e-10
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 1 MDMAVLDFLIGNMDRHHYETFKAFDNETFPIHL 33
+DMA+ DFLIGNMDRHHYE F F ++ F +HL
Sbjct: 92 IDMAIFDFLIGNMDRHHYEMFTKFGDDGFLLHL 124
Score = 51.5 bits (123), Expect = 2e-07
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 425 KLSEAMVESMSRDPIAPILWQPHLDALDRRVKIILQAIRHCIE 467
+LS+ M ES+ +D + P+L +PHL ALDRR++ IL+ + CI
Sbjct: 167 RLSDVMRESLEKDALQPVLTEPHLLALDRRLQKILRTVERCIR 209
>gnl|CDD|198461 cd10470, FAM20B_C, C-terminal putative kinase domain of FAM20B
xylose kinase. Experiments with human FAM20B suggest
that it is a xylose kinase that participates in
proteoglycan production. It may regulate the number of
glycosaminoglycan chains by phosphorylating the xylose
residue in the glycosaminoglycan-protein linkage region
of proteoglycans. The C-terminal domain of FAM20B is a
putative kinase domain, based on mutagenesis of the
C-terminal domain of Drosophila Four-Jointed, a related
Golgi kinase. This subfamily belongs to the FAM20_C
(also known as DUF1193) domain family.
Length = 206
Score = 180 bits (458), Expect = 4e-54
Identities = 79/206 (38%), Positives = 104/206 (50%), Gaps = 52/206 (25%)
Query: 103 FVSPGNNICFHGKCSYYCDTSHAVCGNPDMLEGSYAAFLPDKSVAERKVWRHPWRRSYHK 162
F+ GNN CF+G C YYC CG D++EGS +LPD ++ RHPW+R+Y +
Sbjct: 1 FLKVGNNTCFYGVC-YYCKEEEPACGEGDIMEGSVTLWLPDVWPLQK--HRHPWQRTYKE 57
Query: 163 RRKAQWEHDADYCDIVREIPPYNQGRRLLDLMDMAVLDFLIGNMDRHHYETFKVSTDADY 222
+ A+WE TD DY
Sbjct: 58 NKLARWE------------------------------------------------TDEDY 69
Query: 223 CDIVREIPPYNQGRRLLDLMDMAVLDFLIGNMDRHHYETFKAFDNETFPIHLDHGRGFGR 282
CD V++ PY+ G RLLDL+D A+ DFLIGN DRHHYETF+ + LD+ + FG
Sbjct: 70 CDKVKKKSPYDSGPRLLDLIDTAIFDFLIGNGDRHHYETFQDDPESML-LLLDNAKSFGN 128
Query: 283 AYHDELSILAPILQCCLIRERTLNTL 308
DELSILAP+ QCC+IR+ T + L
Sbjct: 129 PDLDELSILAPLYQCCIIRKSTWDRL 154
Score = 53.9 bits (130), Expect = 3e-08
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 419 FHNGPKKLSEAMVESMSRDPIAPILWQPHLDALDRRVKIILQAIRHCIEV 468
G L+E + E+ DP++P+L +PHL A++RR+ I+ + C++
Sbjct: 157 LKGGV--LTELLEEATKHDPLSPLLTEPHLRAIERRLLIVYATVEQCVDK 204
Score = 50.4 bits (121), Expect = 3e-07
Identities = 16/26 (61%), Positives = 19/26 (73%)
Query: 1 MDMAVLDFLIGNMDRHHYETFKAFDN 26
+D A+ DFLIGN DRHHYETF+
Sbjct: 89 IDTAIFDFLIGNGDRHHYETFQDDPE 114
>gnl|CDD|216301 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD. Members of
this family are implicated in bringing cargo forward
from the ER and binding to coat proteins by their
cytoplasmic domains. This domain corresponds closely to
the beta-strand rich GOLD domain described in. The GOLD
domain is always found combined with lipid- or
membrane-association domains.
Length = 178
Score = 105 bits (263), Expect = 2e-26
Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 309 LNNEFSTYSHKVVYMDFQVGDEPQLPGVGEHVTVMTQMESSTQEIHKSLNTIIDYQTHHR 368
+N FST+S K V D +VG+E + E + +E +++ LN I Q + R
Sbjct: 78 FSNSFSTFSSKTVSFDIKVGEEAKDIAKKEK---LDPLEEELKKLEDQLNDIKREQKYLR 134
Query: 369 LREAQGRKRAEDLNERVMWWSSIEFVVVLLASTLQVYIVKNFF 411
REA+ R+ E N RV+WWS I+ +V++ S LQVY +K FF
Sbjct: 135 EREARHRETNESTNSRVVWWSIIQILVLIGVSVLQVYYLKRFF 177
>gnl|CDD|216776 pfam01904, DUF72, Protein of unknown function DUF72. The function
of this family is unknown.
Length = 230
Score = 32.6 bits (75), Expect = 0.32
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 17/80 (21%)
Query: 404 VYIVKNFFASR---NERQFHNGPKKLSEAMVESMS--RDPIAPILWQ---------PHLD 449
+ VK A R +ER+ + ++L E +E++ + + P+L+Q +L
Sbjct: 49 RFSVK---APRYITHERRLRDAAEELLERFLEALEPLGEKLGPVLFQLPPSFKFDPENLA 105
Query: 450 ALDRRVKIILQAIRHCIEVR 469
L + + + +R +E R
Sbjct: 106 RLLAFLPRLPRGLRVAVEFR 125
>gnl|CDD|227127 COG4789, EscV, Type III secretory pathway, component EscV
[Intracellular trafficking and secretion].
Length = 689
Score = 30.4 bits (69), Expect = 2.3
Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 31/170 (18%)
Query: 335 GVGEHVTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRAEDLNERVM-------- 386
G+ E ++ QME ++ K + I Q R+ E R E ++ R M
Sbjct: 498 GIQETRYLLDQMERKYSDLVKEVQRQIPLQ---RIAEILQRLVEERISIRNMRLILEALV 554
Query: 387 WWSSIEFVVVLLA----STLQVYIVKNFFASRNERQFHNGPKKLS----EAMVESMSRDP 438
W+ E VV+L S L+ YI +F NG L + +E + R+
Sbjct: 555 EWAPKEKDVVMLTEYVRSALKRYIC---------HKFSNGGTILPALLLDPEIEDVIREA 605
Query: 439 IAPILWQPHLDALDRRVKIILQAIRHCIEVRLDKPTENPPLTILPTARIK 488
I +L R+ + IL IR+ + P +L + I+
Sbjct: 606 IRQTSAGSYLALDPRQSEAILDQIRNILS---GTPAPGQDPVLLTSVDIR 652
>gnl|CDD|219587 pfam07804, HipA_C, HipA-like C-terminal domain. The members of
this family are similar to a region close to the
C-terminus of the HipA protein expressed by various
bacterial species. This protein is known to be involved
in high-frequency persistence to the lethal effects of
inhibition of either DNA or peptidoglycan synthesis.
When expressed alone, it is toxic to bacterial cells,
but it is usually tightly associated with HipB, and the
HipA-HipB complex may be involved in autoregulation of
the hip operon. The hip proteins may be involved in cell
division control and may interact with cell division
genes or their products.
Length = 80
Score = 28.3 bits (64), Expect = 2.4
Identities = 16/63 (25%), Positives = 20/63 (31%), Gaps = 16/63 (25%)
Query: 208 RHHYETF--------KVSTDADYCDIVREI-----PPYNQGRRLLDLMDMAVLDFLIGNM 254
R H E Y D+ + + P R L M V + LIGN
Sbjct: 1 RLHQEDLCQLLGLPPGDKYGPSYEDLAKLLRRLSALPAADLRELFRRM---VFNVLIGNT 57
Query: 255 DRH 257
D H
Sbjct: 58 DDH 60
>gnl|CDD|223371 COG0294, FolP, Dihydropteroate synthase and related enzymes
[Coenzyme metabolism].
Length = 274
Score = 29.2 bits (66), Expect = 4.6
Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 9/65 (13%)
Query: 230 PPYNQGRRLLDLMDMAVLDFLIGNMDRHHYETFKAFDNETFPIHLDHGRGFGRAYHDELS 289
P L+ +DM +L E A I LD G GFG+ L
Sbjct: 141 PETMSINDLVAAVDMFLLA---------RIEEALAAGVGRELIILDPGFGFGKTPEHNLE 191
Query: 290 ILAPI 294
+LA +
Sbjct: 192 LLARL 196
>gnl|CDD|223358 COG0281, SfcA, Malic enzyme [Energy production and conversion].
Length = 432
Score = 29.5 bits (67), Expect = 5.0
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 422 GPKKLSEAMVESMSRDPI 439
G +E MV+ M++ PI
Sbjct: 278 GVGAFTEEMVKEMAKHPI 295
>gnl|CDD|239153 cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha
subunit (Formate-Dh-Na) is a major component of nitrate
respiration in bacteria such as in the E. coli formate
dehydrogenase N (Fdh-N). Fdh-N is a membrane protein
that is a complex of three different subunits and is the
major electron donor to the nitrate respiratory chain.
Also included in this CD is the Desulfovibrio gigas
tungsten formate dehydrogenase, DgW-FDH. In contrast to
Fdh-N, which is a functional heterotrimer, DgW-FDH is a
heterodimer. The DgW-FDH complex is composed of a large
subunit carrying the W active site and one [4Fe-4S]
center, and a small subunit that harbors a series of
three [4Fe-4S] clusters as well as a putative vacant
binding site for a fourth cluster. The smaller subunit
is not included in this alignment. Members of the
MopB_Formate-Dh-Na-like CD belong to the
molybdopterin_binding (MopB) superfamily of proteins.
Length = 649
Score = 29.3 bits (66), Expect = 5.7
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 417 RQFHNGPKKLSEAMVESMSRDPIAPILWQPHLDALDRRVKIILQAIRHCIEVRLDKPTEN 476
R F + PK+L M + I W LD + R++K I A +E N
Sbjct: 46 RDFVHSPKRLKYPMYRAPGSGKWEEISWDEALDEIARKMKDIRDA--SFVEKNAAGVVVN 103
Query: 477 PPLTI 481
P +I
Sbjct: 104 RPDSI 108
>gnl|CDD|129610 TIGR00519, asnASE_I, L-asparaginase, type I. Two related families
of asparaginase are designated type I and type II
according to the terminology in E. coli, which has both:
L-asparaginase I is a low-affinity enzyme found in the
cytoplasm, while L-asparaginase II is a high-affinity
secreted enzyme synthesized with a cleavable signal
sequence. This model describes L-asparaginases related
to type I of E. coli. Archaeal putative asparaginases
are of this type but contain an extra ~ 80 residues in a
conserved N-terminal region. These archaeal homologs are
included in this model.
Length = 336
Score = 29.0 bits (65), Expect = 5.9
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 56 ERHNSEIATFHLDRLLGFRRAMPVTGRLCNITSEIYPLVDGELLK 100
R + F D LL A+P + NI E + E +K
Sbjct: 19 YRTGAVHPVFTADELL---SAVPELLDIANIDGEALMNILSENMK 60
>gnl|CDD|189554 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase.
Some members of this family probably do not have lipid
kinase activity and are protein kinases, .
Length = 233
Score = 28.5 bits (64), Expect = 7.5
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 9/48 (18%)
Query: 244 MAVLDFLIGNMDRH----HYETFKAFDNETFPIHLDHGRGFGRAYHDE 287
M+VLD+++GN DRH + H+D G F +A
Sbjct: 127 MSVLDYILGNGDRHLDNILVDKTTG-----KLFHIDFGLCFPKAKRGP 169
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.139 0.439
Gapped
Lambda K H
0.267 0.0594 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,112,791
Number of extensions: 2577117
Number of successful extensions: 2858
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2850
Number of HSP's successfully gapped: 45
Length of query: 493
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 392
Effective length of database: 6,457,848
Effective search space: 2531476416
Effective search space used: 2531476416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.6 bits)