RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy187
(493 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 2e-05
Identities = 50/427 (11%), Positives = 111/427 (25%), Gaps = 154/427 (36%)
Query: 169 EHDADYCDIVREIPPYNQGRRLLDLMDMAVLDFLIGNMDRHHYETFKVSTDADYCDIVRE 228
EH Y DI+ + + + V D + + + I+
Sbjct: 13 EHQYQYKDIL----SVFEDAFVDNFDCKDVQDMPKS-----------ILSKEEIDHIIMS 57
Query: 229 IPPYNQGRRLLDLM--------DMAVLDFLIGN----MDRHHYET------FKAF----- 265
+ RL + V + L N M E + +
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 266 ----DNETFPIH-----------------LD-------HG-RGFGRAYHDELSILAPILQ 296
DN+ F + L G G G+ + +A L
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK------TWVA--LD 169
Query: 297 CCLIRERTLNTLLNNEFSTYSHKVVYMDFQVGDEPQLPGVGEHVTVMTQMESSTQEIHKS 356
C + +F K+ +++ + + P+ V+ ++ +I +
Sbjct: 170 VC----LSYKVQCKMDF-----KIFWLNLKNCNSPET--------VLEMLQKLLYQIDPN 212
Query: 357 LNTIIDYQTHHRLREAQGRKRAEDL-----------------NERVMWWSSIEF---VVV 396
+ D+ ++ +LR + L N + W++ +++
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA--WNAFNLSCKILL 270
Query: 397 L-----LASTLQVYIVKNFFASRNERQF-------------HNGPKKLSE---------- 428
+ L + + P+ L
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 429 AMVESMSRDPIAPILWQPHLDALDRRVKIILQAIRHCIEVRLDKPTENPP----LTILPT 484
+++ RD W ++ I+++ + V L+ P E L++ P
Sbjct: 331 SIIAESIRDG--LATWDNWKHVNCDKLTTIIES---SLNV-LE-PAEYRKMFDRLSVFP- 382
Query: 485 ARIKLPP 491
+P
Sbjct: 383 PSAHIPT 389
Score = 45.2 bits (106), Expect = 4e-05
Identities = 60/406 (14%), Positives = 119/406 (29%), Gaps = 98/406 (24%)
Query: 3 MAVLDFLIGNMDRHHYETFKAFDNETFPIHLVKH--SRFPRDQQTLPNHFYFTDYERHNS 60
+ +L L+ +D + N IH ++ R + + N ++
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-YENCLLVLLNVQNAK 257
Query: 61 EIATFHLD-RLLGFRRAMPVTGRLCNITSEIYPLVDGEL------LKTFFVSPGNNICFH 113
F+L ++L R VT L T+ L + +K+ +
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-----YLD 312
Query: 114 GKCSYYCDTSHAVC-GNPDMLEGSYAAFLPDKSVAERKVWRHPWRRSYHKRRKAQWEHDA 172
+ D V NP A + D +A W+H ++
Sbjct: 313 CRPQ---DLPREVLTTNP-RRLSIIAESIRDG-LATWDNWKHVNCDKLTTIIES------ 361
Query: 173 DYCDIVREIPPYNQGRRLLDL--------MDMAVLDFLIGNMDRHHYETFKVSTDADYCD 224
+ + P + L + +L + ++ + V+ Y
Sbjct: 362 ----SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV-VNKLHKYSL 416
Query: 225 IVREIPPYNQGRRLLDLMDMAVLDFLIGNMDR---H-----HYETFKAFDNETF-PIHLD 275
+ ++ P + + L+ + + H HY K FD++ P +LD
Sbjct: 417 VEKQ--PKESTISIPSIY----LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 276 -----HGRGFGRAYHDELSILAPILQCCLIRERTLNTLLNNEFSTYSHKVVYMDFQ---- 326
H G +H L+ ER F V++DF+
Sbjct: 471 QYFYSH---IG--HH---------LKNIEHPERM------TLFRM-----VFLDFRFLEQ 505
Query: 327 --VGDEPQLPGVGEHVTVMTQMESSTQEIHKS-------LNTIIDY 363
D G + + Q++ I + +N I+D+
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Score = 41.0 bits (95), Expect = 9e-04
Identities = 86/632 (13%), Positives = 166/632 (26%), Gaps = 240/632 (37%)
Query: 6 LDFLIGNMDRHHY--------ETFKA-FD-----NETFPI-------HLVKHSRFPRDQQ 44
+DF G + Y + F FD + I H++
Sbjct: 7 MDFETGEHQ-YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK--DAVSG 63
Query: 45 TL---------PNHFY--F------TDYERHNSEIATFHLDRLLGFRRAMPVTGRLCNIT 87
TL F +Y+ S I T + R + RL N
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-- 121
Query: 88 SEIYPLVDGELLKTFFVS----------------PGNNICFH-----GK-------CS-- 117
D ++ + VS P N+ GK C
Sbjct: 122 -------DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174
Query: 118 ----------YY-----CDTSHAVCGNPDMLEGSYAAFLPDKSVAERKVWRHPWRRSYHK 162
++ C++ V +ML+ P+ + R +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETV---LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 163 RRKAQWEHDADYCD---IVREIPPYNQGRRLLDLMDM-----------AVLDFLIGNMDR 208
+ Y + ++ + Q + + ++ V DFL
Sbjct: 232 AELRRLLKSKPYENCLLVLLNV----QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 209 H-----HYETFKVSTD------ADYCDI-VREIPP------------------------- 231
H H T + D Y D +++P
Sbjct: 288 HISLDHHSMTL--TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 232 ---YNQGRRLLDLMDMAVLDFLIGNMDRHHYETFKAF-DNETFPIHLDHGRGFGRAYHDE 287
+ +L +++ + L+ L R ++ F + P L
Sbjct: 346 NWKHVNCDKLTTIIESS-LNVLEPAEYRKMFDRLSVFPPSAHIPTIL------------- 391
Query: 288 LSIL--APILQCCLIRERTLNTLLN--------NEFSTYSHKVVYMDF--QVGDEPQLPG 335
LS++ I +N L E + +Y++ ++ +E L
Sbjct: 392 LSLIWFDVIKSDV---MVVVNKLHKYSLVEKQPKESTISIPS-IYLELKVKLENEYAL-- 445
Query: 336 VGEHVTVMTQME-SSTQEIHKSLNTIID-----YQTHHRLREAQGRKRAEDLNERVMWWS 389
H +++ T + + +D + HH L+ + E + M +
Sbjct: 446 ---HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH-LKNIE---HPERMTLFRMVFL 498
Query: 390 SIEFV-------------VVLLASTLQV------YIVKNFFASRNERQFHNGPKKLSEAM 430
F+ + +TLQ YI N ++L A+
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN----------DPKYERLVNAI 548
Query: 431 VESMSRDPIAPILWQ-PHLDALDRRVKIILQA 461
++ + + I L + D ++I L A
Sbjct: 549 LDFLPK--IEENLICSKYTDL----LRIALMA 574
Score = 37.1 bits (85), Expect = 0.015
Identities = 28/189 (14%), Positives = 52/189 (27%), Gaps = 47/189 (24%)
Query: 6 LDFLIGNMDR---H-----HYETFKAFDNETFPIHLVKHSRFPRDQ---QTLPNHFYFTD 54
L+ + + H HY K FD++ DQ + +H +
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP-------YLDQYFYSHIGHHLKNIE 485
Query: 55 YERHNSEIATFHLDRLLGF-RRAMPVTGRLCNITSEIYP-LVDGELLKTFFVSPGNNICF 112
+ + LD F + + N + I L + K
Sbjct: 486 HPERMTLFRMVFLD--FRFLEQKIRHDSTAWNASGSILNTLQQLKFYK------------ 531
Query: 113 HGKCSYYCDTSHAVCGNPDMLEGSYAAFLPDKSVAERKVWRHPWRRSYHKRRKAQWEHDA 172
Y CD + L + FLP E + + R E +A
Sbjct: 532 ----PYICDN----DPKYERLVNAILDFLPK---IEENLICSKYTDLL--RIALMAEDEA 578
Query: 173 DYCDIVREI 181
+ + +++
Sbjct: 579 IFEEAHKQV 587
>3akj_A CTKA; protein kinase, transferase; 2.00A {Helicobacter pylori} PDB:
3akk_A* 3akl_A*
Length = 325
Score = 41.4 bits (96), Expect = 5e-04
Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 4/89 (4%)
Query: 203 IGNMDRHHYETFKVSTDADYCDIVREIPPYNQGRRLLDLMDMAVLDFLIGNMDRHHYETF 262
+ N ++ K + D + DM V D L+GN DRH+
Sbjct: 103 LKNTMIELEKSGKDTNLNDVLYAIDNQHFIEPKVLKCFFWDMFVADTLLGNFDRHNGNWG 162
Query: 263 KAFDNETFPIHL----DHGRGFGRAYHDE 287
+ + + D G D
Sbjct: 163 FLRASNSKEYQIAPIFDCGSCLYPQADDV 191
Score = 34.8 bits (79), Expect = 0.052
Identities = 21/135 (15%), Positives = 44/135 (32%), Gaps = 8/135 (5%)
Query: 172 ADYCDIVREIPPYNQGRRLLDLMDMAVLDFLIGNMDRHHYETFKVSTDADYCDIVREIPP 231
D + DM V D L+GN DRH+ + ++ + + P
Sbjct: 120 NDVLYAIDNQHFIEPKVLKCFFWDMFVADTLLGNFDRHNGN-WGFLRASNSKEY-QIAPI 177
Query: 232 YNQGRRLLDLMDMAVLDFLIGNMDRHHYETFKAFDNETFPIHLDHGRGFGRAYHDELSIL 291
++ G L D V ++ N+D + + ++ + D+ + + + +
Sbjct: 178 FDCGSCLYPQADDVVCQKVLSNIDELN---ARIYNFPQSILKDDNDK---KINYYDFLTQ 231
Query: 292 APILQCCLIRERTLN 306
C R
Sbjct: 232 TNNKDCLDALLRIYP 246
Score = 30.2 bits (67), Expect = 1.4
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 2 DMAVLDFLIGNMDRH 16
DM V D L+GN DRH
Sbjct: 143 DMFVADTLLGNFDRH 157
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.030
Identities = 37/267 (13%), Positives = 71/267 (26%), Gaps = 82/267 (30%)
Query: 271 PIHLDHGRGFGRAYHDELSILAPILQCCLIRERTLNTLLNNEFSTYSHKVVYMDFQVGDE 330
P+ L HG E +L P + + L +F+ F DE
Sbjct: 8 PLTLSHG-------SLEHVLLVPTASFFIASQ------LQEQFNK-ILPEPTEGFAADDE 53
Query: 331 PQLPGVGEHVTVMTQMESSTQEIHKSLNTIIDYQTHHRLREAQGRKRA------EDLNER 384
P ++ E+ + + Y + G+ +
Sbjct: 54 P----------------TTPAEL---VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC 94
Query: 385 VMWWSSI-EFVVVLLAS-----TLQVYIVKNFFASRN--ERQFHNGPK-KLSEAMVESMS 435
+ + I LL ++KN+ +R +R F L A+ E +
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 436 RDPIAPI----------------LW---QPHLDALDRRVKIILQAI-----------RHC 465
+ + I L+ + L + L +
Sbjct: 155 Q--LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 466 IEVR--LDKPTENPPLTILPTARIKLP 490
+ + L+ P+ P L + I P
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCP 239
Score = 32.7 bits (74), Expect = 0.30
Identities = 21/133 (15%), Positives = 30/133 (22%), Gaps = 38/133 (28%)
Query: 123 SHAVCGNPDMLEGSYAAFLPDKSVAERKVWRHPWRRSYHKRRKAQWEHDADYCDIVREIP 182
S G M Y A + VW R H + + DIV P
Sbjct: 1626 SQEQ-G---MGMDLYKTS----KAA-QDVWN---RADNHFKDTYGF----SILDIVINNP 1669
Query: 183 P----YNQGRRLLDLMDMAVLDFLIGNMDRHHYETFKVSTDADYCDIVREIPPYNQGRRL 238
+ G + G R +Y T D +I
Sbjct: 1670 VNLTIHFGGEK--------------GKRIRENYSAMIFETIVDGKLKTEKIFK-EINEHS 1714
Query: 239 LDLM---DMAVLD 248
+ +L
Sbjct: 1715 TSYTFRSEKGLLS 1727
Score = 32.7 bits (74), Expect = 0.36
Identities = 51/291 (17%), Positives = 98/291 (33%), Gaps = 97/291 (33%)
Query: 3 MAVLDFLIGNMDRHHYETFKAFDNETFPIHLVKHSRFPRDQQTLPNH-FYFTDYERHNSE 61
+ VL F IG ++A+ N + P +++ S + + +P+ ++ + +
Sbjct: 300 ITVL-FFIG------VRCYEAYPNTSLPPSILEDSL--ENNEGVPSPMLSISNLTQ--EQ 348
Query: 62 IATFHLDRLLGFRRAMPVTGRLCNITSEIYPLVDGELLKTFFVSPGNNICFHGKCSYYCD 121
+ ++++ +P ++ EI LV+G N +
Sbjct: 349 VQD-YVNK---TNSHLPAGKQV-----EIS-LVNG---------AKNLV----------- 378
Query: 122 TSHAVCGNPDMLEGSYAAFLPDKSVAERKVWRHPWRRSYHKRRKAQWEHDADYCDIVREI 181
V G P L G K+ + R P RK ++ + R +
Sbjct: 379 ----VSGPPQSLYGLNLTLRKAKAPSGLDQSRIP-----FSERKLKFSN--------RFL 421
Query: 182 P---PYNQGRRLL-DLMDMAVLDFLIGNMDRHH-------YETFKVSTDADYCDIVREIP 230
P P++ LL D+ D + N+ + Y+TF +D + I
Sbjct: 422 PVASPFH--SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF---DGSDLRVLSGSIS 476
Query: 231 PYNQGRRLLD-LMDMAVLDFLIGNMDRHHYETFKAFDNETFPIH-LDHGRG 279
R++D ++ + V +ET F H LD G G
Sbjct: 477 E-----RIVDCIIRLPV-----------KWETTTQFK----ATHILDFGPG 507
Score = 31.9 bits (72), Expect = 0.52
Identities = 23/125 (18%), Positives = 36/125 (28%), Gaps = 40/125 (32%)
Query: 1 MDM----------AVLDFLIGNMDRHHYETFKAF-------DNETFPIHLVKHSRFPRDQ 43
M M V + D H +T+ F +N P++L H + +
Sbjct: 1631 MGMDLYKTSKAAQDVWN----RADNHFKDTY-GFSILDIVINN---PVNLTIHFGGEKGK 1682
Query: 44 QTLPNHFYFTDYERHNSEIATFH--LDRLLGFRRAMPVTGRLCNITSEIYPLVDGELLKT 101
+ R N F +D L + + TS + G L T
Sbjct: 1683 RI-----------RENYSAMIFETIVDGKLKTEKIFKEINE--HSTSYTFRSEKGLLSAT 1729
Query: 102 FFVSP 106
F P
Sbjct: 1730 QFTQP 1734
>2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL;
1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A*
Length = 720
Score = 32.7 bits (74), Expect = 0.33
Identities = 34/214 (15%), Positives = 60/214 (28%), Gaps = 20/214 (9%)
Query: 169 EHDADYCDIVREIPPYNQGRRLLDLMDMAVLDFLIGNMDR----HHYETFKVSTDADYCD 224
H I + P ++ + LLD V D + + + K + D
Sbjct: 426 AHPDWAIRIQGKKPVRSRNQLLLDFSRKEVRDCVFDQICVVLDQGKIDYVKWDMNRSMAD 485
Query: 225 IVREIPPYNQGRRLLDLMD-------MAVLDFLIGNMDRHHYETFKAFDNETFPIHLDHG 277
+ Y+ + D M+ +L+ G R + D
Sbjct: 486 VYAGNLSYDYVLGVYDFMERLCSRYPDLLLEGCSGGGGRFDAGMLYYSPQIWCSDNTDAI 545
Query: 278 RGFGRAYHDELSILAPILQCCLIRERTLNTLLNNEFSTYSHKVVYMDFQVGDEPQLPGVG 337
Y S P+ N S ++ V M G E +
Sbjct: 546 NRTRIQYG--TSFFYPVSAMGAHVSAVPNHQTGRVTSFHTRGVTAMAGTFGYELNPALLS 603
Query: 338 --EHVTVMTQMESSTQEIHKSLNTIIDYQTHHRL 369
E + Q+ + +K T+I+ T+ RL
Sbjct: 604 DEEKQQIREQI-----KTYKKYETLINEGTYWRL 632
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo
sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Length = 46
Score = 28.6 bits (64), Expect = 0.40
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 108 NNICFHGKCSYYCDTSHAVC 127
N C HG+C Y D S C
Sbjct: 11 NGYCLHGQCIYLVDMSQNYC 30
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.67
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 460 QAIRHCIEVRLDK---PTENPPLTILPTARIK 488
QA++ ++ L K P L I A ++
Sbjct: 20 QALKK-LQASL-KLYADDSAPALAI--KATME 47
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like
domain, CRDGF, cytokine, glycoprotein, membrane,
polymorphism, transmembrane; NMR {Homo sapiens}
Length = 50
Score = 28.3 bits (63), Expect = 0.68
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 108 NNICFHGKCSYYCDTSHAVC 127
N C HG+C Y C
Sbjct: 17 QNFCIHGECKYIEHLEAVTC 36
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm,
hydrolase, metal-binding, metalloprotease, polymorphism,
protease, zinc; 2.30A {Homo sapiens} PDB: 1yuf_A 1yug_A
2tgf_A 1mox_C 3tgf_A 4tgf_A
Length = 50
Score = 27.9 bits (62), Expect = 0.88
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 108 NNICFHGKCSYYCDTSHAVC 127
CFHG C + C
Sbjct: 13 TQFCFHGTCRFLVQEDKPAC 32
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold,
winged-helix-turn-helix, antiparallel-coiled-COI domain,
ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces
cerevisiae}
Length = 1108
Score = 30.6 bits (68), Expect = 1.6
Identities = 16/76 (21%), Positives = 27/76 (35%)
Query: 131 DMLEGSYAAFLPDKSVAERKVWRHPWRRSYHKRRKAQWEHDADYCDIVREIPPYNQGRRL 190
MLE S+ F SV + ++ + E+ +Y +I + I Y + R
Sbjct: 638 FMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQ 697
Query: 191 LDLMDMAVLDFLIGNM 206
+ L FL
Sbjct: 698 VVTHPANALSFLQPGR 713
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase,
tramp, exosome, DEAD, nucleotide-binding; HET: ADP;
2.90A {Saccharomyces cerevisiae}
Length = 1010
Score = 30.5 bits (68), Expect = 1.7
Identities = 16/72 (22%), Positives = 27/72 (37%)
Query: 131 DMLEGSYAAFLPDKSVAERKVWRHPWRRSYHKRRKAQWEHDADYCDIVREIPPYNQGRRL 190
MLE S+ F SV + ++ + E+ +Y +I + I Y + R
Sbjct: 540 FMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQ 599
Query: 191 LDLMDMAVLDFL 202
+ L FL
Sbjct: 600 VVTHPANALSFL 611
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Length = 50
Score = 27.1 bits (60), Expect = 1.7
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 108 NNICFHGKCSYYCDTSHAVC 127
+ C G+C + C
Sbjct: 13 KHYCIKGRCRFVVAEQTPSC 32
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 29.5 bits (66), Expect = 2.6
Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 8/68 (11%)
Query: 219 DADYCDIVREIPPYNQGRRLLDLMDMAVLDFLIGNMDRHHYETFKAFDNETFPIHLDHGR 278
D+D I ++ D+++ D HYE A + GR
Sbjct: 372 DSDDVFFFHCISHHHANESFFLGFDLSI--------DLVHYEDLTAHWHALGAAQTAAGR 423
Query: 279 GFGRAYHD 286
AY +
Sbjct: 424 TLTEAYRE 431
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 3.7
Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 32/94 (34%)
Query: 142 PDKSVAE----RKVWRHPWRRSYHKR----------RKAQWEHDADYCDIVREIPPYNQG 187
D+ E RK WR KR + +W A +++ +NQ
Sbjct: 77 ADRLTQEPESIRK-----WREEQRKRLQELDAASKVMEQEWREKAK-----KDLEEWNQR 126
Query: 188 RRLLDLMDMAVLDFLIGNMDRHHYETFKVSTDAD 221
+ + ++ ++ +R + F DAD
Sbjct: 127 QS--EQVEKNKIN------NRIADKAFYQQPDAD 152
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex
(toxin-growth factor), diphtheria toxin, receptor, H
binding epidermal growth factor; 2.65A {Homo sapiens}
SCOP: g.3.11.1
Length = 79
Score = 27.0 bits (59), Expect = 4.2
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 108 NNICFHGKCSYYCDTSHAVC 127
+ C HG+C Y + C
Sbjct: 45 KDFCIHGECKYVKELRAPSC 64
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase
(decarboxylating)); hypothetical protein, structural
genomics, PSI; 2.50A {Streptococcus pyogenes}
Length = 398
Score = 28.3 bits (64), Expect = 7.1
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 422 GPKKLSEAMVESMSRDPI 439
P L + M+ P+
Sbjct: 267 APGVLKAEWISKMAARPV 284
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba
histolytica}
Length = 487
Score = 28.0 bits (63), Expect = 7.4
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 422 GPKKLSEAMVESMSRDPI 439
GP + ++SM PI
Sbjct: 305 GPGVVKAEWIKSMGEKPI 322
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme,
structural genomics, JCS protein structure initiative,
PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3
PDB: 2hae_A*
Length = 388
Score = 27.9 bits (63), Expect = 8.1
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 422 GPKKLSEAMVESMSRDPI 439
L ++ MSR P+
Sbjct: 272 RGNILKPEWIKKMSRKPV 289
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD,
structural genomics, NPPSFA; HET: NAD MES; 1.60A
{Pyrococcus horikoshii} PDB: 1ww8_A*
Length = 439
Score = 27.9 bits (63), Expect = 9.5
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 421 NGPKKLSEAMVESMSRDPI 439
GP + +E M+ D I
Sbjct: 273 PGPGVIKPQWIEKMNEDAI 291
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.139 0.439
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,153,587
Number of extensions: 502644
Number of successful extensions: 1416
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1401
Number of HSP's successfully gapped: 30
Length of query: 493
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 396
Effective length of database: 3,993,456
Effective search space: 1581408576
Effective search space used: 1581408576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.5 bits)