RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy187
         (493 letters)



>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 46

 Score = 25.5 bits (56), Expect = 2.1
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 108 NNICFHGKCSYYCDTSHAVC 127
           N  C HG+C Y  D S   C
Sbjct: 11  NGYCLHGQCIYLVDMSQNYC 30


>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor,
           HBEGF {Human (Homo sapiens) [TaxId: 9606]}
          Length = 41

 Score = 25.1 bits (55), Expect = 2.7
 Identities = 6/20 (30%), Positives = 9/20 (45%)

Query: 108 NNICFHGKCSYYCDTSHAVC 127
            + C HG+C Y  +     C
Sbjct: 7   KDFCIHGECKYVKELRAPSC 26


>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 50

 Score = 24.8 bits (54), Expect = 4.1
 Identities = 4/20 (20%), Positives = 7/20 (35%)

Query: 108 NNICFHGKCSYYCDTSHAVC 127
            + C  G+C +        C
Sbjct: 13  KHYCIKGRCRFVVAEQTPSC 32


>d1cmwa2 c.120.1.2 (A:10-173) 5' to 3' exonuclease domain of DNA
           polymerase Taq {Thermus aquaticus [TaxId: 271]}
          Length = 164

 Score = 26.4 bits (57), Expect = 6.0
 Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 2/79 (2%)

Query: 152 WRHPWRRSYHKRRKAQWEHDADYCDIVREIPPYNQGR--RLLDLMDMAVLDFLIGNMDRH 209
           +RH     Y   R    E       +++E+          +       VL  L    ++ 
Sbjct: 64  FRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKAEKE 123

Query: 210 HYETFKVSTDADYCDIVRE 228
            YE   ++ D D   ++ +
Sbjct: 124 GYEVRILTADKDLYQLLSD 142


>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 505

 Score = 27.0 bits (59), Expect = 6.8
 Identities = 26/237 (10%), Positives = 48/237 (20%), Gaps = 32/237 (13%)

Query: 27  ETFPIHLVKHSRFPRDQQTLPNHFYFTDYERHNSEIATFHLDRL-LGFRRAMPVTGRLCN 85
             +   L K  +   D                 + +     + L L              
Sbjct: 202 YQYGTQLPKGPQGQVDMAIGKGLARGPLSLLAPTRLIEGEGEDLVLDGVPFTFQNTPGTE 261

Query: 86  ITSEIYPLVDGELLKTFFVSPGNNICFHGKCSYYCDTSHAVCGNPDMLEGSYAAFLPDKS 145
             +E+   +     K   +            + Y      V       +    A      
Sbjct: 262 SPAEMN--IWLPRQKALLM---AENVVGTLHNLYTLRGAEVRDALGWSKYINQALHRFGR 316

Query: 146 VAERKVWRHPWRRSYHKRRKAQWEHDADYCDIVREIPP--YNQGRRLLDLMDMAVLDFLI 203
            AE     H W R  +       E   D    + +      NQG  +  + +   L    
Sbjct: 317 QAEVMFAVHNWPRWGNAEIVEVLEKQRDLYGYLHDQTLHLANQGVTIGQVHNRLRL---- 372

Query: 204 GNMDRHHYETFKVSTDADYCDIVREI------------------PPYNQGRRLLDLM 242
                   E +            R +                   P +   R ++ M
Sbjct: 373 --PPSLDQEWYDRGYHGSVSHNARAVLNRYLGYYDGNPATLDPLSPEDSAGRYVEYM 427


>d1vr0a1 c.148.1.1 (A:1-235) 2-phosphosulfolactate phosphatase ComB
           {Clostridium acetobutylicum [TaxId: 1488]}
          Length = 235

 Score = 26.0 bits (57), Expect = 9.9
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 11/68 (16%)

Query: 132 MLEGSYAAFLPDKSVAERKVWRH------PWRRSYHKRRKAQWEHDAD--YC---DIVRE 180
           +++      L D +   + V++         + + H +R  +     D  YC   DIV+ 
Sbjct: 166 VMDRMKKLELTDAATTAQYVYKTNEDIKGFVKYAKHYKRIMELGLKKDFEYCCKKDIVKL 225

Query: 181 IPPYNQGR 188
           +P Y  G 
Sbjct: 226 VPQYTNGE 233


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.139    0.439 

Gapped
Lambda     K      H
   0.267   0.0558    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,992,527
Number of extensions: 97063
Number of successful extensions: 374
Number of sequences better than 10.0: 1
Number of HSP's gapped: 374
Number of HSP's successfully gapped: 12
Length of query: 493
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 404
Effective length of database: 1,185,626
Effective search space: 478992904
Effective search space used: 478992904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.3 bits)