BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1870
(264 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NP81|SYSM_HUMAN Serine--tRNA ligase, mitochondrial OS=Homo sapiens GN=SARS2 PE=1
SV=1
Length = 518
Score = 218 bits (554), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 106/215 (49%), Positives = 152/215 (70%), Gaps = 7/215 (3%)
Query: 22 SQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADE 81
SQIY+++P + + L+GTAE+G+A Y M+ T+ LP ++ S CYRAE + +
Sbjct: 281 SQIYNIDPARFKD-LNLAGTAEVGLAGYFMDHTVAFRDLPVRMVCSSTCYRAETNTGQEP 339
Query: 82 KGVYRVHCFTKIEMFGVTLP--EDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQ 139
+G+YRVH FTK+EMFGVT P E S + LE+FL + + ELG+H R L+M ELG
Sbjct: 340 RGLYRVHHFTKVEMFGVTGPGLEQSSQLLEEFLSLQMEILTELGLHFRVLDMPTQELGLP 399
Query: 140 AYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNI--RTEDG--KFAHTLNGTACAIPR 195
AY+K+D+EAWMPGR +GE++S S+CTD+Q+RRL+I +TE G +FAHT+N TACA+PR
Sbjct: 400 AYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMFQTEAGELQFAHTVNATACAVPR 459
Query: 196 LLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDT 230
LL+AL+E++Q +DG+V +P LQ ++ RI T
Sbjct: 460 LLIALLESNQQKDGSVLVPPALQSYLGTDRITAPT 494
>sp|Q9N0F3|SYSM_BOVIN Serine--tRNA ligase, mitochondrial OS=Bos taurus GN=SARS2 PE=1 SV=1
Length = 518
Score = 217 bits (552), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 108/226 (47%), Positives = 155/226 (68%), Gaps = 9/226 (3%)
Query: 11 CNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKC 70
C N+K SQIY+++P+ + + L+GTAE+G+A Y M+ ++ LP ++ S C
Sbjct: 272 CGMTPNAKP--SQIYNIDPSRFED-LNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTC 328
Query: 71 YRAEISVVADEKGVYRVHCFTKIEMFGVTLP--EDSEKQLEQFLQFEESLFGELGIHTRT 128
YRAE + G+YRVH FTK+EMFGVT P E S + LE+FL + + ELG+H R
Sbjct: 329 YRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLHFRV 388
Query: 129 LNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNI--RTEDG--KFAH 184
L+M ELG AY+K+D+EAWMPGR +GE++S S+CTD+Q+RRL+I +TE G +FAH
Sbjct: 389 LDMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMFQTEAGELQFAH 448
Query: 185 TLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDT 230
T+N T CA+PRLL+AL+E++Q +DG+V +P LQP++ RI T
Sbjct: 449 TVNATGCAVPRLLIALLESYQQKDGSVLVPPALQPYLGTDRITTPT 494
>sp|Q9JJL8|SYSM_MOUSE Serine--tRNA ligase, mitochondrial OS=Mus musculus GN=Sars2 PE=2
SV=2
Length = 518
Score = 214 bits (545), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 150/215 (69%), Gaps = 7/215 (3%)
Query: 22 SQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADE 81
SQIY+++P+ + + L+GTAE+G+A Y M+ ++ LP ++ S CYRAE +
Sbjct: 281 SQIYNIDPSRFED-LNLAGTAEVGLAGYFMDHSVAFRDLPVRMVCASTCYRAETDTGKEP 339
Query: 82 KGVYRVHCFTKIEMFGVTLP--EDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQ 139
G+YRVH FTK+EMFGVT P E S + L++FL + + ELG+H R L+M ELG
Sbjct: 340 WGLYRVHHFTKVEMFGVTGPGLEQSSQLLDEFLSLQVEILTELGLHFRVLDMPTQELGLP 399
Query: 140 AYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNI--RTEDG--KFAHTLNGTACAIPR 195
AY+K+D+EAWMPGR +GE++S S+CTD+Q+RRL I TE G +FAHT+N TACA+PR
Sbjct: 400 AYRKFDIEAWMPGRGRYGEVTSASNCTDFQSRRLYIMFETETGELQFAHTVNATACAVPR 459
Query: 196 LLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDT 230
+L+AL+E++Q +DG+V +P LQP++ RI T
Sbjct: 460 VLIALLESNQQKDGSVLVPAALQPYLGTDRITAPT 494
>sp|Q1AX26|SYS_RUBXD Serine--tRNA ligase OS=Rubrobacter xylanophilus (strain DSM 9941 /
NBRC 16129) GN=serS PE=3 SV=1
Length = 424
Score = 189 bits (480), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 138/219 (63%), Gaps = 10/219 (4%)
Query: 18 KGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISV 77
+G +QIY +E L TAE+ +A L+++ + E LP++ A +S C+R E
Sbjct: 210 RGPETQIYSVE----NTDLSLIATAEITLAGQLVDEIVAEESLPRRFAGLSHCFRTEAGA 265
Query: 78 VAD-EKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANEL 136
+G+YRVH FTK+EMF T PE S + E+ L EE +F L I R +++ +L
Sbjct: 266 HGRASRGLYRVHQFTKVEMFAFTTPEQSGEMHEEMLSIEEEIFRTLEIPYRVVDICTGDL 325
Query: 137 GAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNI--RTEDG--KFAHTLNGTACA 192
GA AY+KYDVEAWMPGR +GE++S S+ TDYQARRL I R E G + HTLNGTA A
Sbjct: 326 GAAAYRKYDVEAWMPGRGDYGEVTSTSNTTDYQARRLGIRYRPEGGRPRLLHTLNGTAIA 385
Query: 193 IPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDTR 231
+ R ++AL+E HQ +DG+V +PE L P++ + +IG R
Sbjct: 386 VSRTMIALLENHQREDGSVALPEALVPYV-GREVIGPAR 423
>sp|B2S3N6|SYS_TREPS Serine--tRNA ligase OS=Treponema pallidum subsp. pallidum (strain
SS14) GN=serS PE=3 SV=1
Length = 426
Score = 187 bits (476), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 98/217 (45%), Positives = 131/217 (60%), Gaps = 11/217 (5%)
Query: 11 CNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKC 70
C N +G S IY +E G CL TAE+ + Y + L E LP+ A +S C
Sbjct: 203 CGLGFNPRGSGSNIYRIE----GEHRCLVATAEITLGAYHAGEVLEERSLPRLYAGLSHC 258
Query: 71 YRAEISVVAD-EKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTL 129
+R E +G+YRVH FTK+EMF P DSE E+ EE +F L I R +
Sbjct: 259 FRKEAGAAGQFSRGLYRVHQFTKLEMFAYCTPSDSECLHERLRSLEEEIFTALEIPFRVV 318
Query: 130 NMGANELGAQAYKKYDVEAWMPGRK--HWGELSSCSDCTDYQARRLNIRTEDGK----FA 183
+ A +LGA AY+K+D+EAWMPGR+ WGE++S S+CTDYQARRLN+R +D + +
Sbjct: 319 EVCAGDLGAPAYRKWDLEAWMPGRQGGSWGEVTSASNCTDYQARRLNVRYKDAEGKKHYV 378
Query: 184 HTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPF 220
H LNGTA AI R+L+AL+E Q+ +G V IP+ L PF
Sbjct: 379 HMLNGTALAISRVLIALLENGQDAEGRVRIPQALVPF 415
>sp|O83653|SYS_TREPA Serine--tRNA ligase OS=Treponema pallidum (strain Nichols) GN=serS
PE=3 SV=1
Length = 426
Score = 187 bits (476), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 98/217 (45%), Positives = 131/217 (60%), Gaps = 11/217 (5%)
Query: 11 CNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKC 70
C N +G S IY +E G CL TAE+ + Y + L E LP+ A +S C
Sbjct: 203 CGLGFNPRGSGSNIYRIE----GEHRCLVATAEITLGAYHAGEVLEERSLPRLYAGLSHC 258
Query: 71 YRAEISVVAD-EKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTL 129
+R E +G+YRVH FTK+EMF P DSE E+ EE +F L I R +
Sbjct: 259 FRKEAGAAGQFSRGLYRVHQFTKLEMFAYCTPSDSECLHERLRSLEEEIFTALEIPFRVV 318
Query: 130 NMGANELGAQAYKKYDVEAWMPGRK--HWGELSSCSDCTDYQARRLNIRTEDGK----FA 183
+ A +LGA AY+K+D+EAWMPGR+ WGE++S S+CTDYQARRLN+R +D + +
Sbjct: 319 EVCAGDLGAPAYRKWDLEAWMPGRQGGSWGEVTSASNCTDYQARRLNVRYKDAEGKKHYV 378
Query: 184 HTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPF 220
H LNGTA AI R+L+AL+E Q+ +G V IP+ L PF
Sbjct: 379 HMLNGTALAISRVLIALLENGQDAEGRVRIPQALVPF 415
>sp|P38705|SYSM_YEAST Serine--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DIA4 PE=1 SV=1
Length = 446
Score = 186 bits (473), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/214 (46%), Positives = 138/214 (64%), Gaps = 13/214 (6%)
Query: 23 QIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLP--ESQLPKQIAAMSKCYRAEISVVA- 79
QIY L+ G L TAE+ +A N+ L + K++ +S+CYRAE
Sbjct: 237 QIYALQDTNLG----LVATAEIPLAGLGANKVLELNSGECSKKLVGVSRCYRAEAGARGK 292
Query: 80 DEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQ 139
D KG+YRVH FTK+E+F + PE S K LE+ QF+ S+ ELGI + LNM +N+LG
Sbjct: 293 DTKGLYRVHEFTKVELFCWSKPETSAKVLEEIKQFQISVVEELGIPAKVLNMPSNDLGNP 352
Query: 140 AYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDG-----KFAHTLNGTACAIP 194
A+KKYD+EAWMPGR +GE+SS S+CTD+Q+RRLN + D ++ HTLNGTA AIP
Sbjct: 353 AFKKYDIEAWMPGRGKFGEISSASNCTDFQSRRLNTKYRDDNTGKLEYVHTLNGTAMAIP 412
Query: 195 RLLMALVET-HQNQDGTVNIPECLQPFMFNKRII 227
R+++ALVE + G +++PECL+ FM +R I
Sbjct: 413 RVIVALVENFYDPSTGKISVPECLREFMNGQRYI 446
>sp|Q7UXX6|SYS_RHOBA Serine--tRNA ligase OS=Rhodopirellula baltica (strain SH1) GN=serS
PE=3 SV=2
Length = 426
Score = 183 bits (464), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 128/216 (59%), Gaps = 13/216 (6%)
Query: 15 INSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAE 74
N +G +QIY +E L TAE+ + L Q L +LP + +S C+R E
Sbjct: 207 FNPRGPETQIYSIENTELN----LVATAEIPLGGMLSGQILASEELPLRYCGLSHCFRTE 262
Query: 75 ISVVAD-EKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGA 133
KG+YRVH FTK+EMF TLP+ S E+ + E +F L + R ++
Sbjct: 263 AGAAGRASKGLYRVHQFTKVEMFAFTLPDQSTAMHEEMRELECEIFDALEVPYRVIDTAT 322
Query: 134 NELGAQAYKKYDVEAWMPGRKH---WGELSSCSDCTDYQARRLNIRTEDG-----KFAHT 185
+LG AY+KYD+EAWMPGR WGE++S S+CTDYQARRLN+R++ F HT
Sbjct: 323 GDLGGPAYRKYDLEAWMPGRGESGDWGEVTSTSNCTDYQARRLNVRSKSNTQKGTDFVHT 382
Query: 186 LNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFM 221
LNGTA A R ++A++E HQ DGT+N+PE L+P++
Sbjct: 383 LNGTAIATGRAMIAILENHQRADGTINVPEILRPWV 418
>sp|B5YEY8|SYS_DICT6 Serine--tRNA ligase OS=Dictyoglomus thermophilum (strain ATCC 35947
/ DSM 3960 / H-6-12) GN=serS PE=3 SV=1
Length = 425
Score = 182 bits (461), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 92/209 (44%), Positives = 134/209 (64%), Gaps = 9/209 (4%)
Query: 18 KGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISV 77
+G +QIY +E G L TAE+ + Y ++ L E LP + S C+R E
Sbjct: 212 RGPEAQIYRVEDTDLG----LIATAEITLGGYHKDEILDELDLPLKYLGFSHCFRTEAGA 267
Query: 78 VAD-EKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANEL 136
+G+YRVH F+K E+F + PEDSE+ E L EE +F +L I R +++ + +L
Sbjct: 268 YGRYNRGLYRVHQFSKAEIFIICRPEDSEEMHEYILSLEEKIFQKLEIPYRVVDICSGDL 327
Query: 137 GAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIR----TEDGKFAHTLNGTACA 192
GA A +K+D+EAWMPGR +GE++SCS+CTDYQARRLNIR T + ++ H LNGTA A
Sbjct: 328 GAPAARKFDIEAWMPGRGDFGEVTSCSNCTDYQARRLNIRFRRVTGEVEYVHMLNGTAIA 387
Query: 193 IPRLLMALVETHQNQDGTVNIPECLQPFM 221
I R L+A++E +Q +DG++ IP+ LQP++
Sbjct: 388 ISRALIAILENYQQEDGSILIPKVLQPYI 416
>sp|B8E0R9|SYS_DICTD Serine--tRNA ligase OS=Dictyoglomus turgidum (strain Z-1310 / DSM
6724) GN=serS PE=3 SV=1
Length = 425
Score = 181 bits (460), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/209 (44%), Positives = 133/209 (63%), Gaps = 9/209 (4%)
Query: 18 KGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISV 77
+G +QIY +E G L TAE+ + Y ++ L E LP + S C+R E
Sbjct: 212 RGPEAQIYRVEDTDLG----LIATAEITLGGYHKDEILDELDLPLKYLGFSHCFRTEAGA 267
Query: 78 VAD-EKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANEL 136
+G+YRVH F+K E+F + PEDSE+ E L EE +F +L I R L++ + +L
Sbjct: 268 YGRYNRGLYRVHQFSKAEIFIICRPEDSEEMHEYILGLEEKIFQKLEIPYRVLDICSGDL 327
Query: 137 GAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIR----TEDGKFAHTLNGTACA 192
GA A +K+D+EAWMPGR +GE++SCS+CTDYQARRLNIR T + ++ H LNGTA A
Sbjct: 328 GAPAARKFDIEAWMPGRGEFGEVTSCSNCTDYQARRLNIRFRRVTGEVEYVHMLNGTAIA 387
Query: 193 IPRLLMALVETHQNQDGTVNIPECLQPFM 221
I R L+A+ E +Q +DG++ IP+ LQP++
Sbjct: 388 ISRALIAIFENYQQEDGSILIPKALQPYI 416
>sp|Q73KB2|SYS_TREDE Serine--tRNA ligase OS=Treponema denticola (strain ATCC 35405 / CIP
103919 / DSM 14222) GN=serS PE=3 SV=1
Length = 422
Score = 181 bits (459), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 135/219 (61%), Gaps = 11/219 (5%)
Query: 15 INSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAE 74
N +GE S +Y LE G G CL TAE+ + Y ++ + + LP + +S C+R E
Sbjct: 207 FNPRGEESNVYSLE----GEGTCLVATAEITLGGYHSDEIIKKESLPLKYCGLSHCFRRE 262
Query: 75 ISVVAD-EKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGA 133
KG+YRVH F+K+EMF PE+S+ E+ EE +F LGI R ++
Sbjct: 263 AGAAGQFSKGLYRVHQFSKLEMFVYCTPEESDALHEELRLIEEEIFNGLGIPFRVVDTCT 322
Query: 134 NELGAQAYKKYDVEAWMPGRK--HWGELSSCSDCTDYQARRLNIRTED----GKFAHTLN 187
+LGA AY+K+D+EAWMPGR WGE++S S+CTDYQARRLNIR +D KF HTLN
Sbjct: 323 GDLGAPAYRKWDLEAWMPGRNGGEWGEVTSTSNCTDYQARRLNIRYKDDDGKNKFLHTLN 382
Query: 188 GTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRI 226
GTA A+ R ++A++E +Q DG++ IPE L P+ RI
Sbjct: 383 GTALAMSRAMIAVLENYQQADGSIKIPEALVPYCGFDRI 421
>sp|Q9ZBX1|SYS_STRCO Serine--tRNA ligase OS=Streptomyces coelicolor (strain ATCC BAA-471
/ A3(2) / M145) GN=serS PE=3 SV=1
Length = 425
Score = 177 bits (448), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 135/208 (64%), Gaps = 8/208 (3%)
Query: 24 IYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADEK 82
+YHL+ + L GT+E+ +A Y M++ L +LP + A S C+R E S D +
Sbjct: 217 VYHLDKD----DLYLVGTSEVPLAAYHMDEILDGDRLPLRYAGFSPCFRREAGSHGKDTR 272
Query: 83 GVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYK 142
G++RVH F K+EMF LPEDS+ + ++ L++E+ L + R +++ + +LG+ A +
Sbjct: 273 GIFRVHQFDKVEMFSYVLPEDSQAEHQRLLEWEKQWLTSLELPFRVIDVASADLGSSAAR 332
Query: 143 KYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDGKFAH---TLNGTACAIPRLLMA 199
KYD EAW+P + + EL+S SDCT++Q+RRL+IR +GK TLNGT CA+PR ++A
Sbjct: 333 KYDCEAWIPTQGKYRELTSTSDCTEFQSRRLSIRVREGKKVRPLATLNGTLCAVPRTIVA 392
Query: 200 LVETHQNQDGTVNIPECLQPFMFNKRII 227
++E HQ DG+V +PE L+P++ + ++
Sbjct: 393 ILENHQQADGSVRVPEVLRPYLGGREVL 420
>sp|Q9UTB2|SYSM_SCHPO Serine--tRNA ligase, mitochondrial OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dia4 PE=3 SV=2
Length = 479
Score = 174 bits (440), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 127/210 (60%), Gaps = 9/210 (4%)
Query: 20 ERSQIYHLE----PNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI 75
E QIY L+ P CL GTAE+ +A +T + +++ +S+ YR E
Sbjct: 262 EGQQIYELDSYTSPLVSSPKQCLIGTAEISLAALGFKKTF-NNFTERKVVGVSRAYRREA 320
Query: 76 SVVADE-KGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGAN 134
E +G+YR+H FTK+E+F T P S + + + F++ L I R LNM
Sbjct: 321 GARGKENRGLYRLHEFTKVELFAWTHPSRSSEMFNEIVNFQKEFVETLKIPARILNMPTA 380
Query: 135 ELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIR---TEDGKFAHTLNGTAC 191
ELG+ A +KYD+EAWMP R+ +GE++S S+C +YQARRL R +D F HTLNGTA
Sbjct: 381 ELGSSASQKYDIEAWMPARQSYGEITSASNCLEYQARRLLTRYRNDKDSGFVHTLNGTAA 440
Query: 192 AIPRLLMALVETHQNQDGTVNIPECLQPFM 221
AIPRL++A++E HQ +DGTV +PE L P++
Sbjct: 441 AIPRLIIAILENHQQEDGTVKVPETLVPYI 470
>sp|Q82FK8|SYS1_STRAW Serine--tRNA ligase 1 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=serS1 PE=3 SV=1
Length = 425
Score = 172 bits (437), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 132/208 (63%), Gaps = 8/208 (3%)
Query: 24 IYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVA-DEK 82
+YHLE + Y L GT+E+ +A Y M++ L +LP + A S C+R E D +
Sbjct: 217 VYHLEKDDY----YLVGTSEVPLAAYHMDEILDADKLPMRYAGFSPCFRREAGTYGKDTR 272
Query: 83 GVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYK 142
G++RVH F K+EMF PED+E + ++ L++E+ L + + +++ + +LGA A +
Sbjct: 273 GIFRVHQFDKVEMFSYVAPEDAENEHKRLLEWEKQWLTGLELPFQVIDVASGDLGASATR 332
Query: 143 KYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDGKFAH---TLNGTACAIPRLLMA 199
K+D EAW+P + + EL+S S+C +QARRL++R DGK TLNGT CA+PR ++A
Sbjct: 333 KFDCEAWIPTQGKYRELTSASNCDSFQARRLSVRMRDGKKVQPLATLNGTLCAVPRTIVA 392
Query: 200 LVETHQNQDGTVNIPECLQPFMFNKRII 227
++E HQ DG+V +PE L+P++ + ++
Sbjct: 393 ILENHQLPDGSVRVPEMLRPYLGGRELL 420
>sp|Q662D8|SYS_BORGA Serine--tRNA ligase OS=Borrelia garinii (strain PBi) GN=serS PE=3
SV=1
Length = 425
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 131/211 (62%), Gaps = 13/211 (6%)
Query: 15 INSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAE 74
N +G+ S IY +E L GT+E+ + Y N+ + + LP ++A S C+R E
Sbjct: 207 FNPRGDESNIYKIE----STDKYLVGTSEITLGGYYYNKII-DLTLPIKMAGFSHCFRKE 261
Query: 75 ISVVAD-EKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGA 133
KG+YRVH F+K+EMF E+S+ ++FL +E +F EL I R LN+ +
Sbjct: 262 AGAYGQLSKGLYRVHQFSKVEMFCFCKAEESQVIHDEFLSIQEQIFTELEIPYRVLNICS 321
Query: 134 NELGAQAYKKYDVEAWMPGRK---HWGELSSCSDCTDYQARRLNIRTED----GKFAHTL 186
+LG+ AYKKYD+EAWMPGR +GE++S S+CTDYQ+RRL IR +D KFAH +
Sbjct: 322 FDLGSPAYKKYDIEAWMPGRDGKGSYGEVTSTSNCTDYQSRRLKIRYKDQDGQNKFAHMV 381
Query: 187 NGTACAIPRLLMALVETHQNQDGTVNIPECL 217
NGTA A R++++++E Q++ G V IP+ L
Sbjct: 382 NGTAIATTRVIISILENFQDEKGGVRIPKSL 412
>sp|Q0SNT6|SYS_BORAP Serine--tRNA ligase OS=Borrelia afzelii (strain PKo) GN=serS PE=3
SV=1
Length = 425
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/211 (42%), Positives = 129/211 (61%), Gaps = 13/211 (6%)
Query: 15 INSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAE 74
N +G S IY +E L GT+E+ + Y N+ + + LP ++A S C+R E
Sbjct: 207 FNPRGNESNIYKIE----DTDKYLVGTSEITLGGYYYNKII-DLTLPIKMAGFSHCFRKE 261
Query: 75 ISVVAD-EKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGA 133
KG+YRVH F+K+EMF E+S ++FL +E +F EL I R LN+ +
Sbjct: 262 AGAYGQLSKGLYRVHQFSKVEMFCFCKAEESSIIHDEFLSIQEQIFTELEIPYRVLNICS 321
Query: 134 NELGAQAYKKYDVEAWMPGRK---HWGELSSCSDCTDYQARRLNIRTED----GKFAHTL 186
+LG+ AYKKYD+EAWMPGR +GE++S S+CTDYQ+RRL IR +D KFAH +
Sbjct: 322 FDLGSPAYKKYDIEAWMPGRDGKGGYGEITSTSNCTDYQSRRLKIRYKDQDGQNKFAHMV 381
Query: 187 NGTACAIPRLLMALVETHQNQDGTVNIPECL 217
NGTA A R++++++E Q++ G V IP+ L
Sbjct: 382 NGTAIATTRVIISILENFQDEKGGVKIPKSL 412
>sp|B7J1F4|SYS_BORBZ Serine--tRNA ligase OS=Borrelia burgdorferi (strain ZS7) GN=serS
PE=3 SV=1
Length = 425
Score = 166 bits (421), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 129/211 (61%), Gaps = 13/211 (6%)
Query: 15 INSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAE 74
N +G S IY +E L GT+E+ + Y N+ + + LP ++A S C+R E
Sbjct: 207 FNPRGNESNIYKIE----DTDKYLVGTSEITLGGYYYNKII-DLTLPIRMAGFSHCFRKE 261
Query: 75 ISVVAD-EKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGA 133
KG+YRVH F+K+EMF E+S ++FL +E +F EL I R LN+ +
Sbjct: 262 AGAYGQLSKGLYRVHQFSKVEMFCFCKAEESGVIHDEFLSIQEQIFTELEIPYRVLNICS 321
Query: 134 NELGAQAYKKYDVEAWMPGRK---HWGELSSCSDCTDYQARRLNIRTED----GKFAHTL 186
+LG+ AYKKYD+EAWMPGR +GE++S S+CTDYQ+RRL IR +D KFAH +
Sbjct: 322 FDLGSPAYKKYDIEAWMPGRDGKGGYGEVTSTSNCTDYQSRRLKIRYKDQDGQNKFAHMV 381
Query: 187 NGTACAIPRLLMALVETHQNQDGTVNIPECL 217
NGTA A R++++++E Q+Q G V IP+ L
Sbjct: 382 NGTAIATTRVIISILENFQDQKGGVRIPKSL 412
>sp|O51244|SYS_BORBU Serine--tRNA ligase OS=Borrelia burgdorferi (strain ATCC 35210 /
B31 / CIP 102532 / DSM 4680) GN=serS PE=3 SV=1
Length = 425
Score = 166 bits (421), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/211 (42%), Positives = 129/211 (61%), Gaps = 13/211 (6%)
Query: 15 INSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAE 74
N +G S IY +E L GT+E+ + Y N+ + + LP ++A S C+R E
Sbjct: 207 FNPRGNESNIYKIE----DTDKYLVGTSEITLGGYYYNKII-DLTLPIRMAGFSHCFRKE 261
Query: 75 ISVVAD-EKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGA 133
KG+YRVH F+K+EMF E+S ++FL +E +F EL I R LN+ +
Sbjct: 262 AGAYGQLSKGLYRVHQFSKVEMFCFCKAEESGVIHDEFLSIQEQIFTELEIPYRVLNICS 321
Query: 134 NELGAQAYKKYDVEAWMPGRK---HWGELSSCSDCTDYQARRLNIRTED----GKFAHTL 186
+LG+ AYKKYD+EAWMPGR +GE++S S+CTDYQ+RRL IR +D KFAH +
Sbjct: 322 FDLGSPAYKKYDIEAWMPGRDGKGGYGEVTSTSNCTDYQSRRLKIRYKDQDGQNKFAHMV 381
Query: 187 NGTACAIPRLLMALVETHQNQDGTVNIPECL 217
NGTA A R++++++E Q+Q G V IP+ L
Sbjct: 382 NGTAIATTRVIISILENFQDQKGGVRIPKSL 412
>sp|Q5FQ48|SYS_GLUOX Serine--tRNA ligase OS=Gluconobacter oxydans (strain 621H) GN=serS
PE=3 SV=1
Length = 420
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 129/199 (64%), Gaps = 4/199 (2%)
Query: 34 NGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADEKGVYRVHCFTK 92
+G L TAE+ + +M + LP LP ++ A+S+C+R+E S D +G+ R H FTK
Sbjct: 222 DGRWLIPTAEVPLTASVMGEILPADALPIRMTALSQCFRSEAGSAGRDVRGMLRQHQFTK 281
Query: 93 IEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPG 152
E+ V PEDS+ + E+ Q E++ LGI R + + A + G A K +D+EAW+PG
Sbjct: 282 CELVSVVKPEDSDAEHERMTQAAETVLERLGITFRRMLLCAGDTGFGAAKTFDLEAWLPG 341
Query: 153 RKHWGELSSCSDCTDYQARRLNI--RTEDG-KFAHTLNGTACAIPRLLMALVETHQNQDG 209
+K W E+SSCS+ D+QARR+N R E+G F +TLNG+ A+ R ++A++ET+QN+DG
Sbjct: 342 QKAWREISSCSNTRDFQARRMNARYRAENGPAFVNTLNGSGLAVGRTMIAVMETYQNEDG 401
Query: 210 TVNIPECLQPFMFNKRIIG 228
+++IPE L+P+M IG
Sbjct: 402 SIDIPEVLRPYMGGLNRIG 420
>sp|B3Q6H9|SYS_RHOPT Serine--tRNA ligase OS=Rhodopseudomonas palustris (strain TIE-1)
GN=serS PE=3 SV=1
Length = 434
Score = 166 bits (419), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 125/203 (61%), Gaps = 8/203 (3%)
Query: 33 GNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVA-DEKGVYRVHCFT 91
G G+ L TAE+ + + L E +LP ++ A++ C+RAE D +G+ R H FT
Sbjct: 229 GEGYWLIPTAEVSLTNLVRESILDEKELPMRLTALTPCFRAEAGAAGRDTRGMIRQHQFT 288
Query: 92 KIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMP 151
K+E+ +T PE S+ + E+ L E + LG+H R + + ++G + K YD+E WMP
Sbjct: 289 KVELVSITTPEQSKDEHERMLSCAEEVLRRLGLHYRVMTLCTGDMGFASQKTYDIEVWMP 348
Query: 152 GRKHWG---ELSSCSDCTDYQARRLNIRTE--DGK--FAHTLNGTACAIPRLLMALVETH 204
G+ G E+SSCS C D+QARR++ R+ DGK F HTLNG+ A+ R L+A++E +
Sbjct: 349 GQGEGGAYREISSCSVCGDFQARRMDARSRGSDGKPRFVHTLNGSGTAVGRALIAVIENY 408
Query: 205 QNQDGTVNIPECLQPFMFNKRII 227
Q +DG++ +P+ LQP+M ++I
Sbjct: 409 QQEDGSIAVPDVLQPYMGGLKVI 431
>sp|Q6N5X5|SYS_RHOPA Serine--tRNA ligase OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=serS PE=3 SV=1
Length = 434
Score = 166 bits (419), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 125/203 (61%), Gaps = 8/203 (3%)
Query: 33 GNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVA-DEKGVYRVHCFT 91
G G+ L TAE+ + + L E +LP ++ A++ C+RAE D +G+ R H FT
Sbjct: 229 GEGYWLIPTAEVSLTNLVRESILDEKELPMRLTALTPCFRAEAGAAGRDTRGMIRQHQFT 288
Query: 92 KIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMP 151
K+E+ +T PE S+ + E+ L E + LG+H R + + ++G + K YD+E WMP
Sbjct: 289 KVELVSITTPEQSKDEHERMLSCAEEVLRRLGLHYRVMTLCTGDMGFASQKTYDIEVWMP 348
Query: 152 GRKHWG---ELSSCSDCTDYQARRLNIRTE--DGK--FAHTLNGTACAIPRLLMALVETH 204
G+ G E+SSCS C D+QARR++ R+ DGK F HTLNG+ A+ R L+A++E +
Sbjct: 349 GQGEGGAYREISSCSVCGDFQARRMDARSRGSDGKPRFVHTLNGSGTAVGRALIAVIENY 408
Query: 205 QNQDGTVNIPECLQPFMFNKRII 227
Q +DG++ +P+ LQP+M ++I
Sbjct: 409 QQEDGSIAVPDVLQPYMGGLKVI 431
>sp|B1VP80|SYS_STRGG Serine--tRNA ligase OS=Streptomyces griseus subsp. griseus (strain
JCM 4626 / NBRC 13350) GN=serS PE=3 SV=1
Length = 425
Score = 164 bits (414), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 128/208 (61%), Gaps = 8/208 (3%)
Query: 24 IYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVA-DEK 82
+YHLE + Y L GT+E+ +A Y M++ + +LP + A S C+R E D +
Sbjct: 217 VYHLEKDDY----YLVGTSEVPLAAYHMDEIIDADKLPLRYAGFSPCFRREAGTYGKDTR 272
Query: 83 GVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYK 142
G++RVH F K+EMF P D+E + + L +E+ L + + +++ +LG+ A +
Sbjct: 273 GIFRVHQFDKVEMFSYVDPADAEAEHRRLLDWEKQWLTALELPFQVIDVATGDLGSSASR 332
Query: 143 KYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDGKFAH---TLNGTACAIPRLLMA 199
K+D EAW+P + + EL+S S+C +QARRL++R +GK TLNGT CA+PR ++A
Sbjct: 333 KFDCEAWIPTQGKYRELTSASNCDGFQARRLSVRMREGKKVQPLATLNGTLCAVPRTIVA 392
Query: 200 LVETHQNQDGTVNIPECLQPFMFNKRII 227
++E HQ DG+V +PE L+P++ + ++
Sbjct: 393 ILENHQLPDGSVRVPEMLRPYLGGREVL 420
>sp|Q03EA5|SYS_PEDPA Serine--tRNA ligase OS=Pediococcus pentosaceus (strain ATCC 25745 /
183-1w) GN=serS PE=3 SV=1
Length = 426
Score = 163 bits (413), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 123/199 (61%), Gaps = 5/199 (2%)
Query: 35 GWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADEKGVYRVHCFTKI 93
G L TAE+ + Y ++ + E +LP + A+S +R+E S D +G+ R+H F K+
Sbjct: 226 GLTLIPTAEVPLVNYYRDEIIDEEKLPISVTALSPAFRSEAGSAGRDTRGLIRMHQFNKV 285
Query: 94 EMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGR 153
EM + PE S +LE+ E+L +LG+ R + + ++ A K YD+E W+P +
Sbjct: 286 EMVKIAKPEQSWNELEKLTTHAETLLQKLGLPYRVITLTTGDMSFTAAKTYDLEVWIPAQ 345
Query: 154 KHWGELSSCSDCTDYQARRLNI--RTEDGK--FAHTLNGTACAIPRLLMALVETHQNQDG 209
+ E+SSCS+CTD+QARR +I R E+GK + HTLNG+ A+ R + A++E +QN+DG
Sbjct: 346 DKYREISSCSNCTDFQARRAHIRFRDENGKLQYVHTLNGSGLAVGRTVAAILENYQNEDG 405
Query: 210 TVNIPECLQPFMFNKRIIG 228
TVN+PE L P+M +IG
Sbjct: 406 TVNVPEALVPYMQGTTVIG 424
>sp|Q89L00|SYS_BRAJA Serine--tRNA ligase OS=Bradyrhizobium japonicum (strain USDA 110)
GN=serS PE=3 SV=1
Length = 443
Score = 163 bits (412), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 122/195 (62%), Gaps = 8/195 (4%)
Query: 41 TAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVA-DEKGVYRVHCFTKIEMFGVT 99
TAE+ + L E QLP ++ A++ C+RAE D +G+ R H FTK+E+ +T
Sbjct: 246 TAEVSLTNLARESILDEKQLPMRLTALTPCFRAEAGAAGRDTRGMIRQHQFTKVELVSIT 305
Query: 100 LPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWG-- 157
PE S+ +LE+ L E + +L +H R + + A ++G + K YD+E WMPG+ G
Sbjct: 306 TPEASKDELERMLSCAEQVLQKLDLHYRVMTLCAGDMGFSSQKTYDIEVWMPGQGDGGMF 365
Query: 158 -ELSSCSDCTDYQARRLNIRTE--DGK--FAHTLNGTACAIPRLLMALVETHQNQDGTVN 212
E+SSCS C D+QARR++ R+ DGK F HTLNG+ A+ R L+A++ET+Q +DG++
Sbjct: 366 REISSCSVCGDFQARRMDARSRGPDGKPRFVHTLNGSGTAVGRALIAVMETYQQEDGSIA 425
Query: 213 IPECLQPFMFNKRII 227
+P LQP+M ++I
Sbjct: 426 VPSVLQPYMGGLKVI 440
>sp|Q136H4|SYS_RHOPS Serine--tRNA ligase OS=Rhodopseudomonas palustris (strain BisB5)
GN=serS PE=3 SV=1
Length = 434
Score = 163 bits (412), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 124/203 (61%), Gaps = 8/203 (3%)
Query: 33 GNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVA-DEKGVYRVHCFT 91
G G+ L TAE+ + + L E +LP ++ A++ C+RAE D +G+ R H FT
Sbjct: 229 GEGYWLIPTAEVSLTNLVRESILDEKELPMRLTALTPCFRAEAGAAGRDTRGMIRQHQFT 288
Query: 92 KIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMP 151
K+E+ +T PE S+ + E+ L E + LG+H R + + ++G + K YD+E WMP
Sbjct: 289 KVELVSITTPEKSKDEHERMLSCAEEVLRRLGLHYRVMTLCTGDMGFASQKTYDIEVWMP 348
Query: 152 GRKHWG---ELSSCSDCTDYQARRLNIRTE--DGK--FAHTLNGTACAIPRLLMALVETH 204
G+ G E+SSCS C D+QARR++ R+ DGK F HTLNG+ A+ R L+A++E +
Sbjct: 349 GQGEGGAYREISSCSVCGDFQARRMDARSRGPDGKPRFVHTLNGSGTAVGRALIAVIENY 408
Query: 205 QNQDGTVNIPECLQPFMFNKRII 227
Q +DG++ +P+ L P+M ++I
Sbjct: 409 QQEDGSIAVPDVLLPYMGGLKVI 431
>sp|A1RRX4|SYS_PYRIL Serine--tRNA ligase OS=Pyrobaculum islandicum (strain DSM 4184 /
JCM 9189) GN=serS PE=3 SV=1
Length = 448
Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/206 (42%), Positives = 122/206 (59%), Gaps = 9/206 (4%)
Query: 21 RSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVA- 79
R IY +E G L TAE GIA YL + L E +LP S C+R E +
Sbjct: 230 RDAIYKIE----GEDLYLIATAEHGIAAYLYKRELVEDELPLLFVGWSPCFRKEAGAGSR 285
Query: 80 DEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQ 139
D KG++RVH F K+E F +LPEDS + E+ + E L +LG+ R +N+ A++LGA
Sbjct: 286 DLKGIFRVHIFHKVEQFVFSLPEDSWRWHEEITKNTEELIKDLGLPYRVVNICAHDLGAP 345
Query: 140 AYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIR-TEDG---KFAHTLNGTACAIPR 195
A KKYD+E W P + + EL+SCS+ TD+Q+ RL IR T G +F HTLN T A R
Sbjct: 346 AAKKYDIEVWYPAQSMYRELASCSNVTDWQSYRLGIRVTRKGMRREFVHTLNCTGLATTR 405
Query: 196 LLMALVETHQNQDGTVNIPECLQPFM 221
+ A++E Q +DG V IP+ L+P++
Sbjct: 406 TITAILENFQREDGVVEIPKVLRPYL 431
>sp|Q83FJ7|SYS_TROWT Serine--tRNA ligase OS=Tropheryma whipplei (strain Twist) GN=serS
PE=3 SV=1
Length = 417
Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 121/204 (59%), Gaps = 11/204 (5%)
Query: 23 QIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADE 81
++Y L YY L+GT+E+ IA Y ++ L S P + A S CYR E S D
Sbjct: 213 EVYRLPSGYY-----LTGTSEVAIAGYHSDEILDISSGPIRYAGWSSCYRREAGSHGRDT 267
Query: 82 KGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAY 141
+G+ RVH F+K+EMF P+ S ++LE + +E + L I R ++ A ELG A
Sbjct: 268 RGIMRVHQFSKLEMFSYVHPQQSTRELEHIVSMQEKMLNLLEIPYRVSDIAAEELGTSAS 327
Query: 142 KKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDGK----FAHTLNGTACAIPRLL 197
+KYD+EAW+P + W E++S SDCT +QARRLN+R D + TLNGT A R L
Sbjct: 328 RKYDLEAWIPSQNTWREVTSASDCTTFQARRLNVRYRDESGRTGYVATLNGT-LATTRFL 386
Query: 198 MALVETHQNQDGTVNIPECLQPFM 221
+A++E HQ +G++ +PE L+P +
Sbjct: 387 VAILENHQTSNGSIRVPEALRPLL 410
>sp|Q83HA1|SYS_TROW8 Serine--tRNA ligase OS=Tropheryma whipplei (strain TW08/27) GN=serS
PE=3 SV=1
Length = 417
Score = 162 bits (410), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 121/204 (59%), Gaps = 11/204 (5%)
Query: 23 QIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADE 81
++Y L YY L+GT+E+ IA Y ++ L S P + A S CYR E S D
Sbjct: 213 EVYRLPSGYY-----LTGTSEVAIAGYHSDEILDISSGPIRYAGWSSCYRREAGSHGRDT 267
Query: 82 KGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAY 141
+G+ RVH F+K+EMF P+ S ++LE + +E + L I R ++ A ELG A
Sbjct: 268 RGIMRVHQFSKLEMFSYVHPQQSTRELEHIVSMQEKMLNLLEIPYRVSDIAAEELGTSAS 327
Query: 142 KKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDGK----FAHTLNGTACAIPRLL 197
+KYD+EAW+P + W E++S SDCT +QARRLN+R D + TLNGT A R L
Sbjct: 328 RKYDLEAWIPSQNTWREVTSASDCTTFQARRLNVRYRDESGRTGYVATLNGT-LATTRFL 386
Query: 198 MALVETHQNQDGTVNIPECLQPFM 221
+A++E HQ +G++ +PE L+P +
Sbjct: 387 VAILENHQTSNGSIRVPEALRPLL 410
>sp|A5CNA2|SYS_CLAM3 Serine--tRNA ligase OS=Clavibacter michiganensis subsp.
michiganensis (strain NCPPB 382) GN=serS PE=3 SV=1
Length = 426
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 128/205 (62%), Gaps = 10/205 (4%)
Query: 22 SQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVAD 80
++YHL+ + L+GT+E+ +A Y ++ L +Q P + A S CYR E S D
Sbjct: 212 DEVYHLD----DDDLYLTGTSEVALAGYHADEILDLAQGPIRYAGWSTCYRKEAGSYGKD 267
Query: 81 EKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQA 140
+G+ RVH F K+EMF P D+E + E+ L +E + +LG+ R ++ A +LG+ A
Sbjct: 268 TRGIIRVHQFQKLEMFSYVDPADAEAEHERLLAMQERMMQDLGLSYRVIDTAAGDLGSSA 327
Query: 141 YKKYDVEAWMPGRKHWGELSSCSDCTDYQARRL--NIRTEDGKFA--HTLNGTACAIPRL 196
+KYDVEAW+P + + EL+S S+CT +QARRL R EDG+ + TLNGT A R
Sbjct: 328 ARKYDVEAWIPTQDAYRELTSTSNCTTFQARRLGTRFRGEDGRTSPVATLNGT-LATTRW 386
Query: 197 LMALVETHQNQDGTVNIPECLQPFM 221
++A++ETHQ DG+V +PE L+P++
Sbjct: 387 IVAILETHQQADGSVRVPEALRPYL 411
>sp|Q2IWG6|SYS_RHOP2 Serine--tRNA ligase OS=Rhodopseudomonas palustris (strain HaA2)
GN=serS PE=3 SV=1
Length = 476
Score = 161 bits (408), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 123/201 (61%), Gaps = 9/201 (4%)
Query: 36 WCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVA-DEKGVYRVHCFTKIE 94
W + TAE+ + + L E +LP ++ A++ C+RAE D +G+ R H FTK+E
Sbjct: 276 WLIP-TAEVSLTNLVRESILDEKELPMRLTALTPCFRAEAGAAGRDTRGMIRQHQFTKVE 334
Query: 95 MFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRK 154
+ +T PE S+ + E+ L E + LG+H R + + ++G + K YD+E WMPG+
Sbjct: 335 LVSITTPEQSKDEHERMLSCAEEVLRRLGLHYRVMTLCTGDMGFASQKTYDIEVWMPGQG 394
Query: 155 HWG---ELSSCSDCTDYQARRLNIRTE--DGK--FAHTLNGTACAIPRLLMALVETHQNQ 207
G E+SSCS C D+QARR++ R+ DGK F HTLNG+ A+ R L+A++E +Q +
Sbjct: 395 EGGAYREISSCSVCGDFQARRMDARSRGPDGKPRFVHTLNGSGTAVGRALIAVIENYQQE 454
Query: 208 DGTVNIPECLQPFMFNKRIIG 228
DG++ +P+ LQP+M ++I
Sbjct: 455 DGSIAVPDALQPYMGGLKVIA 475
>sp|Q6AH61|SYS_LEIXX Serine--tRNA ligase OS=Leifsonia xyli subsp. xyli (strain CTCB07)
GN=serS PE=3 SV=1
Length = 421
Score = 160 bits (405), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 135/215 (62%), Gaps = 12/215 (5%)
Query: 19 GERS-QIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-S 76
GE S ++YHLE + L+GT+E+ +A Y ++ L ++ P + A S CYR E S
Sbjct: 208 GEHSDEVYHLETD----DLYLTGTSEVALAGYHADEILDVTE-PLRYAGWSTCYRREAGS 262
Query: 77 VVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANEL 136
D +G+ RVH FTK+EMF TLPE +E + + L ++E + LG+ R ++ A +L
Sbjct: 263 AGKDTRGIIRVHQFTKLEMFVYTLPEHAEAEHARLLAWQEEMMQALGLSYRVIDTAAGDL 322
Query: 137 GAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNI--RTEDGKFA--HTLNGTACA 192
G+ A +KYDVEAW+P + + EL+S S+C +QARRL RTE GK A TLNGT A
Sbjct: 323 GSSAARKYDVEAWIPTQGRYRELTSTSNCGTFQARRLETRYRTESGKTAPVATLNGT-LA 381
Query: 193 IPRLLMALVETHQNQDGTVNIPECLQPFMFNKRII 227
R ++A++ETHQ +DG+V +PE L+P++ I+
Sbjct: 382 TTRWIVAILETHQREDGSVLVPETLRPYLGGLEIL 416
>sp|Q316Z9|SYS_DESDG Serine--tRNA ligase OS=Desulfovibrio desulfuricans (strain G20)
GN=serS PE=3 SV=1
Length = 427
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 119/192 (61%), Gaps = 6/192 (3%)
Query: 36 WCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADEKGVYRVHCFTKIE 94
+ L TAE+ + + +PE +LP A ++C+R+E S D KG R H FTK+E
Sbjct: 224 YYLIPTAEVPLTNLHSGEVVPEEKLPIAYTAQTQCFRSEAGSYGKDTKGFIRQHQFTKVE 283
Query: 95 MFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRK 154
M PE S ++LE+ E L +LG+H R + + + ++G A K YD+E W+PG+
Sbjct: 284 MVRFAHPEKSFEELEKLRSHAEVLLQKLGLHYRVVTLCSGDMGFSAAKTYDLEVWLPGQD 343
Query: 155 HWGELSSCSDCTDYQARRLNIRTE--DGK---FAHTLNGTACAIPRLLMALVETHQNQDG 209
+ E+SSCS+CTD+QARR NIRT D K F HTLNG+ A+ R L+A++E +Q DG
Sbjct: 344 KYREISSCSNCTDFQARRANIRTRLADAKKPVFLHTLNGSGLAVGRTLVAILENYQQADG 403
Query: 210 TVNIPECLQPFM 221
+V +PE L+P+M
Sbjct: 404 SVVVPEVLRPYM 415
>sp|Q07N47|SYS_RHOP5 Serine--tRNA ligase OS=Rhodopseudomonas palustris (strain BisA53)
GN=serS PE=3 SV=1
Length = 476
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 128/214 (59%), Gaps = 10/214 (4%)
Query: 25 YHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVA-DEKG 83
+ EPN W + TAE+ + + L E +LP ++ A++ C+RAE D +G
Sbjct: 265 FAYEPNP-DRRWLIP-TAEVSLTNLVRESILDEKELPMRLTALTPCFRAEAGAAGRDTRG 322
Query: 84 VYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKK 143
+ R H FTK+E+ +T PE S+ + E+ L E + LG+H R + + ++G + K
Sbjct: 323 MIRQHQFTKVELVSITTPEQSKDEHERMLACAEEVLRRLGLHYRVMTLCTGDMGFASQKT 382
Query: 144 YDVEAWMPGRKHWG---ELSSCSDCTDYQARRLNIRTE--DGK--FAHTLNGTACAIPRL 196
YD+E WMPG+ G E+SSCS C D+QARR++ R+ DGK F HTLNG+ A+ R
Sbjct: 383 YDIEVWMPGQGEGGAYREISSCSVCGDFQARRMDARSRGPDGKPRFVHTLNGSGTAVGRA 442
Query: 197 LMALVETHQNQDGTVNIPECLQPFMFNKRIIGDT 230
L+A++E +Q +DG++ +P+ L P+M ++I ++
Sbjct: 443 LIAVIENYQQEDGSIAVPDALLPYMGGLKVIANS 476
>sp|B2UPP6|SYS_AKKM8 Serine--tRNA ligase OS=Akkermansia muciniphila (strain ATCC
BAA-835) GN=serS PE=3 SV=1
Length = 426
Score = 159 bits (401), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/207 (40%), Positives = 122/207 (58%), Gaps = 8/207 (3%)
Query: 23 QIYHLEPNYYGN---GWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVV 78
Q+ E + YG L TAE+ + + L ES LP ++AA + C+R E S
Sbjct: 210 QLPKFEEDMYGTEDQQMFLIPTAEVPVTNLYRDTILQESDLPIKMAAYTPCFRREAGSAG 269
Query: 79 ADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGA 138
+G+ RVH F K+E+ + PEDS ++LE ES+ +LG+H R + + +LG
Sbjct: 270 RINRGMIRVHQFDKVELVQILKPEDSFRELEVLRSHAESILQKLGLHYRVIELCTGDLGF 329
Query: 139 QAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDG----KFAHTLNGTACAIP 194
+ K YD+E W PG+ + E+SSCS TDYQARR+ +R +D +F HTLNG+ A+P
Sbjct: 330 SSAKTYDIEVWAPGQGQYLEVSSCSCFTDYQARRMRLRYKDADGKNQFCHTLNGSGTALP 389
Query: 195 RLLMALVETHQNQDGTVNIPECLQPFM 221
RL +AL+ET+Q DG++ IPE L P+
Sbjct: 390 RLYVALLETYQQPDGSIRIPEALVPYF 416
>sp|A7HN78|SYS_FERNB Serine--tRNA ligase OS=Fervidobacterium nodosum (strain ATCC 35602
/ DSM 5306 / Rt17-B1) GN=serS PE=3 SV=1
Length = 426
Score = 159 bits (401), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/189 (43%), Positives = 118/189 (62%), Gaps = 5/189 (2%)
Query: 38 LSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADEKGVYRVHCFTKIEMF 96
L TAE+ +A +++ L E++LPK+ A + CYR E S D +G+ R H F K+E+
Sbjct: 229 LIPTAEVSLAALHIDEILEENKLPKKYTAFTPCYRREAGSYGKDVRGLIRQHQFEKVELV 288
Query: 97 GVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHW 156
T PE S + LEQ Q E + LG+ R + + +LG A K YD+E W+P +
Sbjct: 289 WYTTPERSFEDLEQLTQDAERILQLLGLPYRVVTLCTGDLGFAAAKTYDIEVWLPSYNSY 348
Query: 157 GELSSCSDCTDYQARRLNI--RTEDGK--FAHTLNGTACAIPRLLMALVETHQNQDGTVN 212
E+SSCS+ TD+QARR NI R +DGK + HTLNG+ AI R L+A++E +QN DGT+
Sbjct: 349 KEISSCSNVTDFQARRGNIRYRAKDGKLNYVHTLNGSGLAIGRTLVAIMENYQNPDGTIT 408
Query: 213 IPECLQPFM 221
IPE L+P+M
Sbjct: 409 IPEVLRPYM 417
>sp|Q6A5P0|SYS_PROAC Serine--tRNA ligase OS=Propionibacterium acnes (strain KPA171202 /
DSM 16379) GN=serS PE=3 SV=1
Length = 424
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 123/194 (63%), Gaps = 4/194 (2%)
Query: 38 LSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADEKGVYRVHCFTKIEMF 96
L GT+E+ +A + ++ L +++LPK+ A S CYR E S D +G++RVH F K+EMF
Sbjct: 227 LVGTSEVALAAFHSDEILDDAELPKRYVAFSPCYRREAGSYGKDTRGIFRVHWFDKVEMF 286
Query: 97 GVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHW 156
LP+++E E+ L FE+ L I + L++ + +LG A +K+D W+P + +
Sbjct: 287 VYCLPQEAEAWHEKLLSFEKDFITALQIPFQVLDVASGDLGLSAARKFDCYGWLPTQNRY 346
Query: 157 GELSSCSDCTDYQARRLNIRTE--DG-KFAHTLNGTACAIPRLLMALVETHQNQDGTVNI 213
E++S S+CT +QARRL+IR DG + TLNGT CA+ R+++ L+E HQ DG+V I
Sbjct: 347 REITSTSNCTTFQARRLSIRHRGPDGVEPLATLNGTLCAMTRIIIMLLENHQQADGSVRI 406
Query: 214 PECLQPFMFNKRII 227
PE L+P++ + I
Sbjct: 407 PEALRPYLGGREFI 420
>sp|B0RCF1|SYS_CLAMS Serine--tRNA ligase OS=Clavibacter michiganensis subsp. sepedonicus
(strain ATCC 33113 / JCM 9667) GN=serS PE=3 SV=1
Length = 426
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/205 (40%), Positives = 127/205 (61%), Gaps = 10/205 (4%)
Query: 22 SQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVAD 80
++YHL+ + L+GT+E+ +A Y ++ L + P + A S CYR E S D
Sbjct: 212 DEVYHLD----DDDLYLTGTSEVALAGYHADEILDLAAGPIRYAGWSTCYRKEAGSYGKD 267
Query: 81 EKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQA 140
+G+ RVH F K+EMF P D+E + E+ L +E + +LG+ R ++ A +LG+ A
Sbjct: 268 TRGIIRVHQFQKLEMFSYVDPADAEAEHERLLAMQERMMQDLGLAYRVIDTAAGDLGSSA 327
Query: 141 YKKYDVEAWMPGRKHWGELSSCSDCTDYQARRL--NIRTEDGKFA--HTLNGTACAIPRL 196
+KYDVEAW+P + + EL+S S+CT +QARRL R EDG+ + TLNGT A R
Sbjct: 328 ARKYDVEAWIPTQGAYRELTSTSNCTTFQARRLGTRFRGEDGRTSPVATLNGT-LATTRW 386
Query: 197 LMALVETHQNQDGTVNIPECLQPFM 221
++A++ETHQ DG+V +PE L+P++
Sbjct: 387 IVAILETHQRADGSVRVPEALRPYL 411
>sp|B6JFP3|SYS_OLICO Serine--tRNA ligase OS=Oligotropha carboxidovorans (strain ATCC
49405 / DSM 1227 / OM5) GN=serS PE=3 SV=1
Length = 439
Score = 157 bits (398), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 78/211 (36%), Positives = 125/211 (59%), Gaps = 12/211 (5%)
Query: 33 GNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVA-DEKGVYRVHCFT 91
G G+ L TAE+ + + L E +LP ++ A++ C+RAE D +G+ R H FT
Sbjct: 229 GQGYWLIPTAEVPLTNLVRESILDEKELPMRLTALTPCFRAEAGAAGRDTRGMIRQHQFT 288
Query: 92 KIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMP 151
K+E+ +T P++S + E+ L E + LG+H R + + ++G + K YD+E WMP
Sbjct: 289 KVELVSITTPDESRNEHERMLSCAEEVLKRLGLHYRVMTLCTGDMGFASQKTYDIEVWMP 348
Query: 152 GR-------KHWGELSSCSDCTDYQARRLNIRTE--DGK--FAHTLNGTACAIPRLLMAL 200
G+ + E+SSCS C D+QARR++ R D K F HTLNG+ A+ R L+A+
Sbjct: 349 GQISSQGEGGMYREISSCSVCGDFQARRMDARYRGPDNKPHFVHTLNGSGTAVGRALIAV 408
Query: 201 VETHQNQDGTVNIPECLQPFMFNKRIIGDTR 231
+ET+Q +DG++ +P+ LQP+M ++I R
Sbjct: 409 METYQQEDGSIAVPDVLQPYMGGLKVIERDR 439
>sp|Q4A172|SYS_STAS1 Serine--tRNA ligase OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=serS
PE=3 SV=1
Length = 427
Score = 157 bits (398), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 116/197 (58%), Gaps = 6/197 (3%)
Query: 41 TAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADEKGVYRVHCFTKIEMFGVT 99
TAE+ + Y N+ + LP + A S CYR+E S D +G+ R+H F K+EM +
Sbjct: 231 TAEVPLTNYYRNEIIAPDVLPAKFTAQSACYRSEAGSAGRDTRGLIRLHQFDKVEMVRIE 290
Query: 100 LPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGEL 159
PEDS + LE E++ ELG+ R + + ++G + K YD+E W+P + E+
Sbjct: 291 KPEDSWQALEDMTHHAEAILEELGLPYRRVILCTGDIGFGSSKTYDLEVWLPSYNDYKEI 350
Query: 160 SSCSDCTDYQARRLNIRTEDGK-----FAHTLNGTACAIPRLLMALVETHQNQDGTVNIP 214
SSCS+ TD+QARR NIR + K AHTLNG+ A+ R A+VE +QN+DG+V IP
Sbjct: 351 SSCSNITDFQARRSNIRFKRDKNAKPELAHTLNGSGLAVGRTFAAIVENYQNEDGSVTIP 410
Query: 215 ECLQPFMFNKRIIGDTR 231
E L PFM K +I T+
Sbjct: 411 EVLVPFMGGKTVIRPTK 427
>sp|Q8U1K2|SYS_PYRFU Serine--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM
3638 / JCM 8422 / Vc1) GN=serS PE=3 SV=1
Length = 455
Score = 157 bits (398), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 120/210 (57%), Gaps = 10/210 (4%)
Query: 24 IYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVA-DEK 82
IY +E G L TAE +A N+ L LP A S C+R E D K
Sbjct: 239 IYKVE----GEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVAFSPCFRKEAGTAGKDTK 294
Query: 83 GVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYK 142
G++RVH F K+E F + PE+S + E+ ++ E LF EL I R +N+ +LG A K
Sbjct: 295 GIFRVHQFHKVEQFVYSRPEESWEWHERLVRNAEELFQELEIPYRVVNICTGDLGYVAAK 354
Query: 143 KYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTED-----GKFAHTLNGTACAIPRLL 197
KYD+EAWMPG+ + E+ S S+CTD+QARRLNIR D ++ HTLN TA A R +
Sbjct: 355 KYDIEAWMPGQGRFREVVSASNCTDWQARRLNIRFRDRTDEKPRYVHTLNSTAIATSRAI 414
Query: 198 MALVETHQNQDGTVNIPECLQPFMFNKRII 227
+A++E HQ +DGTV IP L + K I+
Sbjct: 415 VAILENHQQEDGTVKIPRALWKYTGFKEIV 444
>sp|A9HLG2|SYS_GLUDA Serine--tRNA ligase OS=Gluconacetobacter diazotrophicus (strain
ATCC 49037 / DSM 5601 / PAl5) GN=serS PE=3 SV=1
Length = 424
Score = 157 bits (398), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 119/194 (61%), Gaps = 6/194 (3%)
Query: 34 NGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVA-DEKGVYRVHCFTK 92
+G L TAE+ + + LP S LP+++ A+S C+R+E D +G+ R H F K
Sbjct: 222 DGRWLIPTAEVPLTASVAGDILPASALPRRMVALSSCFRSEAGAAGRDTRGMLRQHQFQK 281
Query: 93 IEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPG 152
+EM +T P DS+ + E+ + E + LGI R + + A + G A + +D+EAW+PG
Sbjct: 282 VEMVSITAPGDSDAEHERMTRCAEKVLERLGIPYRRMLLCAGDTGFGAARTFDLEAWLPG 341
Query: 153 RKHWGELSSCSDCTDYQARRLNI--RTEDG---KFAHTLNGTACAIPRLLMALVETHQNQ 207
+ W E+SSCS D+QARR+N R DG +F HTLNG+ A+ R L+A++E +QN
Sbjct: 342 QDAWREISSCSTTRDFQARRMNARYRPADGAGPEFVHTLNGSGLAVGRTLIAVMENYQNA 401
Query: 208 DGTVNIPECLQPFM 221
DG++ +P+ L+P+M
Sbjct: 402 DGSITVPQALRPYM 415
>sp|A7HXK4|SYS_PARL1 Serine--tRNA ligase OS=Parvibaculum lavamentivorans (strain DS-1 /
DSM 13023 / NCIMB 13966) GN=serS PE=3 SV=1
Length = 435
Score = 157 bits (398), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 119/199 (59%), Gaps = 6/199 (3%)
Query: 36 WCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADEKGVYRVHCFTKIE 94
+ L TAE+ + + L E +LPK+ A + C+RAE S D +G+ R H F+K+E
Sbjct: 234 YWLIPTAEVPLTNLVRESILSEEELPKRFTAYTACFRAEAGSAGRDTRGMIRQHQFSKVE 293
Query: 95 MFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRK 154
+ +T PE S ++ E+ L E + L +H R + + ++G + K YD+E W+PG+
Sbjct: 294 LVSITTPEKSREEHERMLSCAEEVLKRLDLHYRVMTLSTGDMGFASRKTYDIEVWLPGQN 353
Query: 155 HWGELSSCSDCTDYQARRLNIR-----TEDGKFAHTLNGTACAIPRLLMALVETHQNQDG 209
+ E+SSCS C D+QARR+N R ++ +F HTLNG+ A+ R L+A++E +Q DG
Sbjct: 354 AFREISSCSVCGDFQARRMNARYRPKGEKNTRFVHTLNGSGLAVGRALVAVMENYQQADG 413
Query: 210 TVNIPECLQPFMFNKRIIG 228
++ +P LQP+M + +I
Sbjct: 414 SITVPTALQPYMGGQEVIA 432
>sp|Q1GV79|SYS_SPHAL Serine--tRNA ligase OS=Sphingopyxis alaskensis (strain DSM 13593 /
LMG 18877 / RB2256) GN=serS PE=3 SV=1
Length = 426
Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/194 (40%), Positives = 121/194 (62%), Gaps = 6/194 (3%)
Query: 34 NGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADEKGVYRVHCFTK 92
+G L T+EM + + Q L E+ LP ++ A++ C+R+E S D +G R H F K
Sbjct: 223 DGLWLISTSEMSLTNAVREQILAEADLPIRMTALTPCFRSEAGSAGRDTRGYIRQHQFWK 282
Query: 93 IEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPG 152
+E+ +T PEDS+ +LE+ + ES+ L + R + + A ++G A K YD+E W+PG
Sbjct: 283 VELVSITRPEDSDAELERKTRAAESILEALELPYRKMLLCAGDMGFAARKTYDLEVWLPG 342
Query: 153 RKHWGELSSCSDCTDYQARRLN--IRTEDGK---FAHTLNGTACAIPRLLMALVETHQNQ 207
+ + E+SSCS+C D+QARR+N R E GK F HTLNG+ A+ R L+A++E +Q
Sbjct: 343 QNAYREISSCSNCGDFQARRMNARFRREGGKGNEFVHTLNGSGLAVGRTLVAILENYQQA 402
Query: 208 DGTVNIPECLQPFM 221
DG+V+IP L P+M
Sbjct: 403 DGSVDIPAALLPYM 416
>sp|A0Q3T2|SYS_CLONN Serine--tRNA ligase OS=Clostridium novyi (strain NT) GN=serS PE=3
SV=1
Length = 426
Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 117/200 (58%), Gaps = 6/200 (3%)
Query: 34 NGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADEKGVYRVHCFTK 92
NG+ L TAE+ + N+ L LP + AA S C+RAE S D +G+ R H F K
Sbjct: 226 NGYFLIPTAEVPVTNMYRNEILNGDDLPIKHAAYSACFRAEAGSAGRDTRGLVRQHQFNK 285
Query: 93 IEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPG 152
+E+ PE S +LE+ E + LG+ R + + +LG A KYD+E WMP
Sbjct: 286 VELVKFVKPEQSYDELEKLTNDAEDVLKGLGLPYRVVRICKGDLGFTAALKYDIEVWMPS 345
Query: 153 RKHWGELSSCSDCTDYQARRLNIR-TEDGK----FAHTLNGTACAIPRLLMALVETHQNQ 207
+ E+SSCS+ D+QARR NIR E+GK F HTLNG+ AI R + A++E +QN+
Sbjct: 346 YNRYVEISSCSNFEDFQARRANIRYKENGKGKPEFIHTLNGSGVAIGRTVAAILENYQNE 405
Query: 208 DGTVNIPECLQPFMFNKRII 227
DGTV IPE L+P+M N +I
Sbjct: 406 DGTVTIPEALRPYMRNLDVI 425
>sp|Q2GA28|SYS_NOVAD Serine--tRNA ligase OS=Novosphingobium aromaticivorans (strain DSM
12444) GN=serS PE=3 SV=1
Length = 426
Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 119/194 (61%), Gaps = 6/194 (3%)
Query: 34 NGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVA-DEKGVYRVHCFTK 92
+G L TAE+ + + Q L E+QLP ++ A++ C+R+E D +G R H F K
Sbjct: 223 DGRWLIPTAEVSLTNAVQGQILGEAQLPLRMTALTPCFRSEAGAAGRDTRGFIRQHQFEK 282
Query: 93 IEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPG 152
+E+ +T PEDSE + E+ Q E + LG+ R + + ++G A K YD+E W+PG
Sbjct: 283 VELVSITRPEDSESEHERMTQCAEGILQALGLPYRKVLLCTGDMGFTARKTYDLEVWLPG 342
Query: 153 RKHWGELSSCSDCTDYQARRLNIR-----TEDGKFAHTLNGTACAIPRLLMALVETHQNQ 207
+ + E+SSCS+C D+QARR+N R + +F HTLNG+ A+ R L+A++E +Q +
Sbjct: 343 QGAYREISSCSNCGDFQARRMNARYRPEGAKGTEFVHTLNGSGLAVGRTLVAVLENYQQE 402
Query: 208 DGTVNIPECLQPFM 221
DG+V +PE L P+M
Sbjct: 403 DGSVAVPEVLLPYM 416
>sp|A0LI63|SYS_SYNFM Serine--tRNA ligase OS=Syntrophobacter fumaroxidans (strain DSM
10017 / MPOB) GN=serS PE=3 SV=1
Length = 423
Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 119/194 (61%), Gaps = 6/194 (3%)
Query: 36 WCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADEKGVYRVHCFTKIE 94
+ L TAE+ + MN+TL ES+LPK A + C+R+E S D +G+ R H F K+E
Sbjct: 225 FYLVPTAEVPVTNIHMNETLEESELPKLYTAFTPCFRSEAGSYGKDTRGLIRQHQFNKVE 284
Query: 95 MFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRK 154
+ + PE S ++LE+ L E + ELG+H R + + ++G + K YD+E W+PG+
Sbjct: 285 LVKLVKPESSYEELEKLLLDAERILQELGLHYRVVTLCTGDMGFSSAKTYDIEVWLPGQN 344
Query: 155 HWGELSSCSDCTDYQARRLNIR-----TEDGKFAHTLNGTACAIPRLLMALVETHQNQDG 209
+ E+SSCS+ D+QARR NIR +F HTLNG+ A+ R L+A++E Q DG
Sbjct: 345 TYREISSCSNFEDFQARRANIRFRRKGQSKTEFVHTLNGSGLAVGRTLVAILENGQQADG 404
Query: 210 TVNIPECLQPFMFN 223
+V+IP L+P++ N
Sbjct: 405 SVSIPPALRPYLGN 418
>sp|Q0W8S5|SYS_UNCMA Serine--tRNA ligase OS=Uncultured methanogenic archaeon RC-I
GN=serS PE=3 SV=1
Length = 425
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/196 (41%), Positives = 114/196 (58%), Gaps = 7/196 (3%)
Query: 33 GNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVA-DEKGVYRVHCFT 91
G+ L T+E I + E LP ++A +S C+R EI D KG++RVH F
Sbjct: 224 GDDMYLIATSEHPIGAMYQGEIFEEKDLPLRLAGISPCFRREIGAHGLDTKGLFRVHQFH 283
Query: 92 KIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMP 151
KIE F PEDS K E+ L E++F +LG+ +N+ ++G A KKYD+E WMP
Sbjct: 284 KIEQFVFCKPEDSWKIHEEILANAEAVFQQLGLPYHVVNICTGDIGTVAAKKYDIEVWMP 343
Query: 152 GRKHWGELSSCSDCTDYQARRLNIRTEDGK------FAHTLNGTACAIPRLLMALVETHQ 205
+ E+ SCS+CT YQA RLNI+ D K + HTLN TA A R + A++E +Q
Sbjct: 344 RENTYKEVVSCSNCTAYQATRLNIKVRDPKDFESKRYVHTLNSTAIATSRAMRAILENNQ 403
Query: 206 NQDGTVNIPECLQPFM 221
+DG+V IPE L+P+M
Sbjct: 404 QKDGSVLIPEVLRPYM 419
>sp|B5RL50|SYS_BORDL Serine--tRNA ligase OS=Borrelia duttonii (strain Ly) GN=serS PE=3
SV=1
Length = 424
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/213 (45%), Positives = 132/213 (61%), Gaps = 12/213 (5%)
Query: 15 INSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAE 74
N +G S IY +E L GTAE+ + Y N T+ + + P ++A +S C+R E
Sbjct: 207 FNPRGAESNIYKIE----DTDKYLVGTAEITLGGYYYN-TILDLKSPLKMAGLSHCFRKE 261
Query: 75 ISVVAD-EKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGA 133
KG+YRVH F+K+EMF EDS++ +FL+ EE +F EL I R LN+ +
Sbjct: 262 AGAAGQFSKGLYRVHQFSKVEMFCFCRSEDSDRIHNEFLELEEEIFTELEIPYRVLNVCS 321
Query: 134 NELGAQAYKKYDVEAWMPGRKH---WGELSSCSDCTDYQARRLNIR-TEDG--KFAHTLN 187
++LGA AYKKYD+EAWMPGR +GE++S S+CTDYQ+RRL IR EDG KF H +N
Sbjct: 322 SDLGAPAYKKYDIEAWMPGRGENGDYGEVTSTSNCTDYQSRRLKIRYKEDGQNKFVHMIN 381
Query: 188 GTACAIPRLLMALVETHQNQDGTVNIPECLQPF 220
GTA A R L+A++E Q+ G V IP+ L +
Sbjct: 382 GTAIASTRTLIAILENFQDAKGGVRIPKSLVKY 414
>sp|P99178|SYS_STAAN Serine--tRNA ligase OS=Staphylococcus aureus (strain N315) GN=serS
PE=1 SV=1
Length = 428
Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 113/194 (58%), Gaps = 6/194 (3%)
Query: 41 TAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADEKGVYRVHCFTKIEMFGVT 99
TAE+ + + N+ + LP++ S C+R+E S D +G+ R+H F K+EM
Sbjct: 231 TAEVPLTNFYRNEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLIRLHQFDKVEMVRFE 290
Query: 100 LPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGEL 159
PEDS LE+ E++ ELG+ R + + ++G A K YD+E W+P + E+
Sbjct: 291 QPEDSWNALEEMTTNAEAILEELGLPYRRVILCTGDIGFSASKTYDIEVWLPSYNDYKEI 350
Query: 160 SSCSDCTDYQARRLNIRTEDGK-----FAHTLNGTACAIPRLLMALVETHQNQDGTVNIP 214
SSCS+CTD+QARR NIR + K AHTLNG+ A+ R A+VE +QN+DGTV IP
Sbjct: 351 SSCSNCTDFQARRANIRFKRDKAAKPELAHTLNGSGLAVGRTFAAIVENYQNEDGTVTIP 410
Query: 215 ECLQPFMFNKRIIG 228
E L PFM K I
Sbjct: 411 EALVPFMGGKTQIS 424
>sp|P61083|SYS_STAAM Serine--tRNA ligase OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=serS PE=1 SV=1
Length = 428
Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/194 (41%), Positives = 113/194 (58%), Gaps = 6/194 (3%)
Query: 41 TAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADEKGVYRVHCFTKIEMFGVT 99
TAE+ + + N+ + LP++ S C+R+E S D +G+ R+H F K+EM
Sbjct: 231 TAEVPLTNFYRNEIIQPGVLPEKFTGQSACFRSEAGSAGRDTRGLIRLHQFDKVEMVRFE 290
Query: 100 LPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGEL 159
PEDS LE+ E++ ELG+ R + + ++G A K YD+E W+P + E+
Sbjct: 291 QPEDSWNALEEMTTNAEAILEELGLPYRRVILCTGDIGFSASKTYDIEVWLPSYNDYKEI 350
Query: 160 SSCSDCTDYQARRLNIRTEDGK-----FAHTLNGTACAIPRLLMALVETHQNQDGTVNIP 214
SSCS+CTD+QARR NIR + K AHTLNG+ A+ R A+VE +QN+DGTV IP
Sbjct: 351 SSCSNCTDFQARRANIRFKRDKAAKPELAHTLNGSGLAVGRTFAAIVENYQNEDGTVTIP 410
Query: 215 ECLQPFMFNKRIIG 228
E L PFM K I
Sbjct: 411 EALVPFMGGKTQIS 424
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,723,508
Number of Sequences: 539616
Number of extensions: 3939707
Number of successful extensions: 10461
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 8011
Number of HSP's gapped (non-prelim): 856
length of query: 264
length of database: 191,569,459
effective HSP length: 115
effective length of query: 149
effective length of database: 129,513,619
effective search space: 19297529231
effective search space used: 19297529231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)