Query psy1870
Match_columns 264
No_of_seqs 170 out of 1352
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 18:26:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1870.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1870hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02678 seryl-tRNA synthetase 100.0 1.2E-69 2.5E-74 517.8 18.0 235 6-249 203-447 (448)
2 PLN02320 seryl-tRNA synthetase 100.0 8.8E-68 1.9E-72 508.0 16.7 221 6-230 262-500 (502)
3 KOG2509|consensus 100.0 6.6E-68 1.4E-72 491.8 13.2 226 6-235 214-447 (455)
4 PRK05431 seryl-tRNA synthetase 100.0 7.7E-65 1.7E-69 484.6 18.9 218 7-229 201-424 (425)
5 COG0172 SerS Seryl-tRNA synthe 100.0 6.4E-65 1.4E-69 478.8 17.2 216 10-230 207-428 (429)
6 TIGR00414 serS seryl-tRNA synt 100.0 1.4E-61 3.1E-66 461.2 17.8 211 6-221 202-418 (418)
7 cd00770 SerRS_core Seryl-tRNA 100.0 5.7E-59 1.2E-63 426.0 18.4 211 6-221 81-297 (297)
8 cd00779 ProRS_core_prok Prolyl 100.0 1.1E-49 2.4E-54 357.4 14.1 190 7-203 61-255 (255)
9 cd00772 ProRS_core Prolyl-tRNA 100.0 1.2E-47 2.5E-52 346.0 17.7 191 7-203 62-264 (264)
10 PRK00960 seryl-tRNA synthetase 100.0 6.1E-48 1.3E-52 372.8 15.1 220 7-239 254-517 (517)
11 KOG2324|consensus 100.0 5.8E-47 1.3E-51 344.6 13.1 217 7-232 82-339 (457)
12 cd00778 ProRS_core_arch_euk Pr 100.0 1.3E-45 2.8E-50 332.1 14.6 187 9-202 65-260 (261)
13 PRK08661 prolyl-tRNA synthetas 100.0 1.5E-42 3.2E-47 335.8 16.9 211 8-229 75-295 (477)
14 TIGR00408 proS_fam_I prolyl-tR 100.0 9.3E-43 2E-47 336.8 14.3 212 8-228 69-289 (472)
15 TIGR00409 proS_fam_II prolyl-t 100.0 1.3E-39 2.7E-44 320.7 19.4 148 7-163 77-225 (568)
16 PRK09194 prolyl-tRNA synthetas 100.0 3E-39 6.5E-44 318.6 19.6 151 7-166 77-228 (565)
17 TIGR00415 serS_MJ seryl-tRNA s 100.0 2.5E-39 5.5E-44 309.8 17.6 228 2-242 240-520 (520)
18 PRK12325 prolyl-tRNA synthetas 100.0 4.5E-39 9.8E-44 308.8 17.9 214 7-229 77-353 (439)
19 PRK03991 threonyl-tRNA synthet 100.0 6.2E-38 1.4E-42 310.6 16.8 213 7-230 257-508 (613)
20 cd00771 ThrRS_core Threonyl-tR 100.0 4.8E-38 1E-42 287.9 12.5 196 7-219 60-298 (298)
21 COG0442 ProS Prolyl-tRNA synth 100.0 7.9E-38 1.7E-42 301.2 9.5 204 8-222 78-288 (500)
22 PLN02837 threonine-tRNA ligase 100.0 1.2E-35 2.7E-40 295.2 15.8 210 6-230 276-525 (614)
23 PF00587 tRNA-synt_2b: tRNA sy 100.0 1.9E-34 4E-39 243.9 10.8 142 7-153 30-173 (173)
24 PRK04173 glycyl-tRNA synthetas 100.0 1.2E-33 2.7E-38 272.1 17.6 191 34-230 158-372 (456)
25 cd00670 Gly_His_Pro_Ser_Thr_tR 100.0 1.3E-32 2.8E-37 241.7 15.4 190 7-201 32-235 (235)
26 PRK14799 thrS threonyl-tRNA sy 100.0 8.9E-31 1.9E-35 256.4 15.6 206 7-230 198-447 (545)
27 PLN02908 threonyl-tRNA synthet 100.0 9.7E-31 2.1E-35 263.2 15.3 207 7-230 351-598 (686)
28 PRK12444 threonyl-tRNA synthet 100.0 2E-30 4.3E-35 259.3 17.4 207 7-230 304-550 (639)
29 TIGR00418 thrS threonyl-tRNA s 100.0 1.7E-29 3.7E-34 249.1 17.1 210 7-230 230-479 (563)
30 PRK14894 glycyl-tRNA synthetas 100.0 5.9E-29 1.3E-33 237.8 15.1 177 22-203 122-331 (539)
31 PRK12305 thrS threonyl-tRNA sy 100.0 4.2E-29 9.1E-34 246.9 13.2 206 7-230 236-485 (575)
32 COG0441 ThrS Threonyl-tRNA syn 100.0 1.3E-28 2.8E-33 241.4 12.4 211 6-232 249-498 (589)
33 PLN02734 glycyl-tRNA synthetas 100.0 1.1E-28 2.5E-33 244.1 11.8 144 22-170 234-424 (684)
34 TIGR00389 glyS_dimeric glycyl- 99.9 3.7E-27 8E-32 229.9 12.9 201 22-230 142-466 (551)
35 COG0423 GRS1 Glycyl-tRNA synth 99.9 1.7E-27 3.8E-32 227.0 9.9 201 22-229 146-465 (558)
36 KOG4163|consensus 99.9 1.2E-27 2.7E-32 222.3 2.1 220 2-229 114-352 (551)
37 KOG1637|consensus 99.9 8.7E-27 1.9E-31 218.5 7.2 205 6-230 221-468 (560)
38 PRK00413 thrS threonyl-tRNA sy 99.9 3.7E-24 8.1E-29 214.0 18.4 209 7-230 300-548 (638)
39 cd00774 GlyRS-like_core Glycyl 99.9 2.1E-23 4.7E-28 187.1 3.1 173 22-201 64-254 (254)
40 PRK07080 hypothetical protein; 99.7 8.9E-17 1.9E-21 146.5 13.5 202 6-219 76-312 (317)
41 KOG2298|consensus 99.7 3.5E-18 7.6E-23 161.1 3.6 142 22-168 168-356 (599)
42 cd00768 class_II_aaRS-like_cor 99.7 5.9E-16 1.3E-20 132.4 13.4 164 23-196 41-211 (211)
43 cd00773 HisRS-like_core Class 99.2 3.2E-10 6.8E-15 101.9 11.5 108 9-128 34-142 (261)
44 CHL00201 syh histidine-tRNA sy 99.1 1.5E-09 3.2E-14 104.5 13.0 101 21-130 63-164 (430)
45 TIGR00442 hisS histidyl-tRNA s 98.9 1.4E-08 3E-13 96.4 12.3 106 14-129 52-158 (397)
46 PRK00037 hisS histidyl-tRNA sy 98.8 3.3E-08 7.2E-13 94.2 10.7 100 13-126 55-155 (412)
47 PRK09537 pylS pyrolysyl-tRNA s 98.8 6.3E-08 1.4E-12 92.4 12.2 160 8-201 234-395 (417)
48 COG0124 HisS Histidyl-tRNA syn 98.8 4.4E-08 9.5E-13 94.0 11.2 115 12-137 54-170 (429)
49 PLN02530 histidine-tRNA ligase 98.6 2E-07 4.2E-12 91.3 11.0 98 21-129 126-227 (487)
50 PRK12420 histidyl-tRNA synthet 98.6 2.5E-07 5.5E-12 88.8 10.7 97 21-129 62-159 (423)
51 PF01409 tRNA-synt_2d: tRNA sy 98.6 1.3E-06 2.9E-11 78.3 13.8 159 21-200 64-227 (247)
52 PTZ00326 phenylalanyl-tRNA syn 98.6 6.4E-07 1.4E-11 87.2 12.5 147 34-200 326-478 (494)
53 TIGR00443 hisZ_biosyn_reg ATP 98.5 8E-07 1.7E-11 82.1 10.2 98 21-128 49-147 (314)
54 COG0016 PheS Phenylalanyl-tRNA 98.3 6E-06 1.3E-10 76.8 12.2 155 21-199 158-315 (335)
55 PRK12293 hisZ ATP phosphoribos 98.2 1.1E-05 2.5E-10 73.6 9.5 93 21-133 57-149 (281)
56 PRK04172 pheS phenylalanyl-tRN 98.1 2.5E-05 5.4E-10 76.6 11.9 151 24-201 318-469 (489)
57 PLN02853 Probable phenylalanyl 98.1 4.6E-05 1E-09 74.2 13.5 146 34-200 316-463 (492)
58 TIGR02367 PylS pyrrolysyl-tRNA 98.1 2.6E-05 5.7E-10 74.9 11.3 160 8-201 270-431 (453)
59 PRK12295 hisZ ATP phosphoribos 98.1 2.6E-05 5.7E-10 74.0 10.8 93 21-129 46-141 (373)
60 PRK12292 hisZ ATP phosphoribos 98.1 2.4E-05 5.2E-10 74.5 10.3 98 21-129 59-159 (391)
61 TIGR00470 sepS O-phosphoseryl- 98.0 7.7E-05 1.7E-09 72.1 12.6 145 34-198 181-329 (533)
62 PLN02972 Histidyl-tRNA synthet 97.9 8.1E-05 1.8E-09 76.0 11.4 94 22-129 383-479 (763)
63 PRK00488 pheS phenylalanyl-tRN 97.9 0.0004 8.6E-09 65.0 14.8 151 22-198 156-317 (339)
64 cd00669 Asp_Lys_Asn_RS_core As 97.9 0.00033 7.2E-09 63.6 13.4 79 21-112 36-115 (269)
65 PRK12421 ATP phosphoribosyltra 97.9 0.00013 2.8E-09 69.6 11.1 98 21-129 63-162 (392)
66 PF13393 tRNA-synt_His: Histid 97.6 0.00085 1.8E-08 61.5 11.5 97 22-129 52-150 (311)
67 COG0442 ProS Prolyl-tRNA synth 97.1 0.00048 1E-08 67.6 4.3 45 183-230 371-415 (500)
68 KOG1936|consensus 97.1 0.00076 1.6E-08 64.4 5.1 101 14-128 109-213 (518)
69 TIGR00468 pheS phenylalanyl-tR 97.0 0.014 3.1E-07 53.7 12.2 142 35-199 128-271 (294)
70 COG0173 AspS Aspartyl-tRNA syn 96.9 0.0011 2.4E-08 65.1 4.6 81 25-117 179-260 (585)
71 KOG2411|consensus 96.5 0.0032 7E-08 61.1 4.6 74 34-119 226-300 (628)
72 PLN02788 phenylalanine-tRNA sy 96.4 0.047 1E-06 52.4 12.0 145 21-200 119-278 (402)
73 COG2024 Phenylalanyl-tRNA synt 96.2 0.0073 1.6E-07 57.1 4.9 127 54-198 200-337 (536)
74 PLN02903 aminoacyl-tRNA ligase 95.5 0.023 5E-07 57.6 5.5 46 62-113 273-319 (652)
75 PF00152 tRNA-synt_2: tRNA syn 95.4 0.11 2.4E-06 48.4 9.7 81 21-114 57-142 (335)
76 PRK09350 poxB regulator PoxA; 95.4 0.024 5.1E-07 52.5 4.8 67 33-112 57-124 (306)
77 TIGR00459 aspS_bact aspartyl-t 95.3 0.024 5.2E-07 56.9 5.0 47 62-114 207-254 (583)
78 PRK12820 bifunctional aspartyl 95.1 0.02 4.2E-07 58.6 3.6 46 63-114 226-272 (706)
79 PRK00476 aspS aspartyl-tRNA sy 94.7 0.034 7.3E-07 56.0 4.2 46 62-113 210-256 (588)
80 TIGR00469 pheS_mito phenylalan 94.3 1.5 3.3E-05 42.8 14.2 63 21-98 98-164 (460)
81 PLN02850 aspartate-tRNA ligase 93.8 0.15 3.3E-06 50.7 6.6 78 21-112 260-339 (530)
82 PRK06253 O-phosphoseryl-tRNA s 93.8 0.41 8.9E-06 47.4 9.3 149 35-200 183-332 (529)
83 COG3705 HisZ ATP phosphoribosy 93.7 0.12 2.6E-06 49.4 5.5 97 21-130 59-157 (390)
84 PRK00484 lysS lysyl-tRNA synth 93.7 0.097 2.1E-06 51.6 5.0 78 23-113 209-287 (491)
85 cd00776 AsxRS_core Asx tRNA sy 93.5 0.1 2.2E-06 48.6 4.6 76 22-112 60-137 (322)
86 cd02426 Pol_gamma_b_Cterm C-te 93.2 0.063 1.4E-06 43.4 2.3 26 201-229 10-35 (128)
87 cd00775 LysRS_core Lys_tRNA sy 93.1 0.14 3.1E-06 47.8 4.9 77 23-113 45-123 (329)
88 PRK12445 lysyl-tRNA synthetase 93.0 0.14 3E-06 50.7 4.8 68 33-113 231-299 (505)
89 PLN02502 lysyl-tRNA synthetase 92.9 0.095 2.1E-06 52.4 3.6 68 33-113 276-344 (553)
90 PTZ00385 lysyl-tRNA synthetase 92.9 0.15 3.2E-06 51.9 4.9 79 22-113 269-348 (659)
91 PRK06462 asparagine synthetase 92.5 0.15 3.2E-06 47.9 4.1 69 33-112 82-151 (335)
92 PRK03932 asnC asparaginyl-tRNA 92.5 0.18 3.9E-06 49.2 4.8 78 21-112 168-254 (450)
93 KOG0555|consensus 92.4 0.12 2.6E-06 49.4 3.3 42 63-109 310-352 (545)
94 PTZ00425 asparagine-tRNA ligas 92.4 0.2 4.4E-06 50.3 5.1 46 62-112 344-390 (586)
95 PRK05159 aspC aspartyl-tRNA sy 92.3 0.15 3.3E-06 49.4 4.2 78 21-112 171-250 (437)
96 PTZ00417 lysine-tRNA ligase; P 92.2 0.24 5.2E-06 49.9 5.4 68 33-113 300-368 (585)
97 TIGR00458 aspS_arch aspartyl-t 92.0 0.22 4.8E-06 48.2 4.8 78 21-112 168-246 (428)
98 cd00777 AspRS_core Asp tRNA sy 91.7 0.28 6E-06 44.9 4.8 46 62-113 70-116 (280)
99 cd00496 PheRS_alpha_core Pheny 91.6 1.2 2.6E-05 38.9 8.6 74 35-123 59-132 (218)
100 TIGR00457 asnS asparaginyl-tRN 91.1 0.27 5.9E-06 48.0 4.4 78 21-111 171-256 (453)
101 TIGR00462 genX lysyl-tRNA synt 91.1 0.11 2.5E-06 47.9 1.7 81 33-129 52-133 (304)
102 TIGR00499 lysS_bact lysyl-tRNA 91.0 0.2 4.3E-06 49.5 3.4 79 23-114 209-288 (496)
103 KOG2784|consensus 90.0 0.29 6.2E-06 46.4 3.3 90 60-163 332-422 (483)
104 PLN02221 asparaginyl-tRNA synt 89.7 0.5 1.1E-05 47.5 5.0 42 63-109 328-370 (572)
105 PTZ00401 aspartyl-tRNA synthet 89.4 0.26 5.7E-06 49.2 2.7 78 21-112 248-327 (550)
106 PLN02532 asparagine-tRNA synth 89.3 0.53 1.2E-05 47.8 4.8 46 62-112 390-436 (633)
107 PLN02603 asparaginyl-tRNA synt 88.5 0.71 1.5E-05 46.4 5.0 41 62-107 322-363 (565)
108 PRK02983 lysS lysyl-tRNA synth 88.2 0.37 8.1E-06 51.9 3.1 78 23-113 807-885 (1094)
109 cd00774 GlyRS-like_core Glycyl 88.2 0.36 7.8E-06 43.3 2.6 64 104-169 186-252 (254)
110 PRK12294 hisZ ATP phosphoribos 87.0 4.5 9.8E-05 36.9 9.0 80 25-125 53-132 (272)
111 COG2269 Truncated, possibly in 83.2 1.9 4.2E-05 39.7 4.6 54 33-99 68-121 (322)
112 COG1190 LysU Lysyl-tRNA synthe 79.2 0.88 1.9E-05 44.7 1.1 51 33-97 227-278 (502)
113 COG0017 AsnS Aspartyl/asparagi 78.6 1.9 4.1E-05 41.9 3.1 74 17-107 166-241 (435)
114 PRK14938 Ser-tRNA(Thr) hydrola 76.6 1.4 3.1E-05 42.1 1.6 37 191-230 247-283 (387)
115 PRK09616 pheT phenylalanyl-tRN 71.5 30 0.00066 34.6 9.7 93 24-128 403-495 (552)
116 PRK05425 asparagine synthetase 62.8 4.4 9.6E-05 37.8 1.7 72 145-217 228-315 (327)
117 TIGR00669 asnA aspartate--ammo 60.2 5.3 0.00012 37.2 1.7 73 144-217 234-322 (330)
118 PTZ00213 asparagine synthetase 55.4 5.9 0.00013 37.2 1.2 73 144-217 253-341 (348)
119 cd00858 GlyRS_anticodon GlyRS 49.7 11 0.00024 29.6 1.7 18 211-230 18-35 (121)
120 PF03462 PCRF: PCRF domain; I 47.3 69 0.0015 25.1 6.0 42 100-141 57-98 (115)
121 cd00645 AsnA Asparagine synthe 37.8 18 0.0004 33.5 1.5 59 145-204 218-291 (309)
122 TIGR03683 A-tRNA_syn_arch alan 37.8 1.7E+02 0.0037 31.4 8.8 126 63-200 115-250 (902)
123 PF15518 L_protein_N: L protei 37.5 58 0.0013 27.8 4.3 33 100-132 98-130 (183)
124 PRK13902 alaS alanyl-tRNA synt 33.1 2E+02 0.0043 30.9 8.4 124 63-200 118-246 (900)
125 PRK08179 prfH peptide chain re 33.0 86 0.0019 27.4 4.8 38 100-137 11-48 (200)
126 TIGR03072 release_prfH putativ 31.6 98 0.0021 27.0 4.9 38 100-137 10-47 (200)
127 PF00462 Glutaredoxin: Glutare 30.6 77 0.0017 21.0 3.4 25 111-135 11-35 (60)
128 COG2502 AsnA Asparagine synthe 30.1 39 0.00085 30.9 2.2 71 145-218 235-323 (330)
129 cd00733 GlyRS_alpha_core Class 29.9 4.1E+02 0.009 24.3 8.6 88 56-162 41-138 (279)
130 TIGR00471 pheT_arch phenylalan 28.7 4E+02 0.0086 26.7 9.4 93 24-128 405-497 (551)
131 PRK00591 prfA peptide chain re 28.3 1E+02 0.0022 29.4 4.9 48 99-146 121-168 (359)
132 PF00152 tRNA-synt_2: tRNA syn 27.1 33 0.00072 31.7 1.4 88 121-214 218-331 (335)
133 KOG2726|consensus 26.3 91 0.002 30.0 4.1 45 102-146 149-193 (386)
134 PRK08787 peptide chain release 25.5 1.3E+02 0.0029 28.1 5.0 47 100-146 76-122 (313)
135 PF10865 DUF2703: Domain of un 23.5 1.1E+02 0.0025 24.4 3.6 34 104-137 21-56 (120)
136 TIGR00020 prfB peptide chain r 22.9 1.5E+02 0.0033 28.3 4.9 48 99-146 134-181 (364)
137 KOG0554|consensus 22.8 35 0.00075 33.0 0.6 81 21-114 167-259 (446)
138 cd00777 AspRS_core Asp tRNA sy 22.3 46 0.00099 30.3 1.3 29 187-216 250-278 (280)
139 PF01841 Transglut_core: Trans 22.2 1.6E+02 0.0034 21.8 4.1 23 112-134 58-80 (113)
140 PRK07342 peptide chain release 21.9 2.2E+02 0.0047 27.0 5.7 47 100-146 99-145 (339)
141 TIGR00019 prfA peptide chain r 21.1 1.8E+02 0.0039 27.7 5.0 47 100-146 122-168 (360)
142 PRK05589 peptide chain release 21.0 2.4E+02 0.0053 26.5 5.8 47 100-146 96-142 (325)
143 PRK06746 peptide chain release 20.5 2.5E+02 0.0054 26.4 5.8 54 93-146 90-143 (326)
144 PRK00578 prfB peptide chain re 20.2 1.9E+02 0.004 27.7 4.9 47 99-145 134-180 (367)
No 1
>PLN02678 seryl-tRNA synthetase
Probab=100.00 E-value=1.2e-69 Score=517.77 Aligned_cols=235 Identities=35% Similarity=0.552 Sum_probs=219.8
Q ss_pred chhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCc-cCCccCCCc
Q psy1870 6 CNALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADEKGV 84 (264)
Q Consensus 6 ~~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~-s~g~~~~GL 84 (264)
...+|++||++|.+ +++||++++. ++++||+||||++++++++++++||++||++++++|+|||+|+ ++|++++||
T Consensus 203 ~~~~~~~sG~~~~f-~e~my~i~~~--~~~~yLi~TaE~~l~~~h~~~~~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL 279 (448)
T PLN02678 203 RKDVMAKCAQLAQF-DEELYKVTGE--GDDKYLIATSEQPLCAYHRGDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGI 279 (448)
T ss_pred cHHHHhhcCCcccc-hhcCceecCC--CCceeeecccccccChHHhcccCCHHhCCceeEEeccccccccccCCCcCCcc
Confidence 36789999999987 8899999754 3689999999999999999999999999999999999999999 568999999
Q ss_pred eeeEEEEEeeEEEEcCcch--HHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEec
Q psy1870 85 YRVHCFTKIEMFGVTLPED--SEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSC 162 (264)
Q Consensus 85 ~R~reF~~~E~~~f~~pe~--s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~ 162 (264)
+|+|||+|+|+|+||+|++ |.++|+++++.+++||+.||||||+|.+|++|||++++++||||+|+|+++.|+||+||
T Consensus 280 ~RvhqF~KvE~f~~~~pe~~~s~~~~e~~l~~~~~i~~~L~lpyrvv~~~sgdlg~~a~~~yDiE~W~P~~~~y~EvsS~ 359 (448)
T PLN02678 280 FRVHQFEKVEQFCITSPNGNESWEMHEEMLKNSEDFYQSLGIPYQVVSIVSGALNDAAAKKYDLEAWFPASKTYRELVSC 359 (448)
T ss_pred eEEEEEEEEEEEEEECCCchhHHHHHHHHHHHHHHHHHHcCCCeEEEeecccccCCchhhceeeEeeccccCCceEEeee
Confidence 9999999999999999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhcccceeecCC-------CceeEEecccccHhHHHHHHHHhccccCCceeccCCccccccceeeecCCCCCCc
Q psy1870 163 SDCTDYQARRLNIRTEDG-------KFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDTRGAPS 235 (264)
Q Consensus 163 s~~~D~qa~rl~i~y~~~-------~~~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~~~~~~~~ 235 (264)
|||+||||||++|+|.+. .|+||+||||||++|+|+|||||||++|| |+||++|+|||+|..+|+ |.
T Consensus 360 Snc~D~QaRRl~iryr~~~~~~~~~~~vHTLNgt~lA~~R~l~AiLEn~Q~~dg-i~iP~vL~pym~g~~~i~-----~~ 433 (448)
T PLN02678 360 SNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTLCCILENYQTEDG-VRVPEVLQPFMGGIEFLP-----FK 433 (448)
T ss_pred cccccHhhhcccceecccccCCCCceeEEecCCchhHHHHHHHHHHHhCcCCCC-eECChhhhhhcCCCceec-----CC
Confidence 999999999999999842 49999999999999999999999999999 999999999999889996 45
Q ss_pred ccccccccchHhhh
Q psy1870 236 LVKVKTGISKAKKK 249 (264)
Q Consensus 236 ~~~~~~~~~~~~~~ 249 (264)
-+.+-+++||.||+
T Consensus 434 ~~~~~~~~~~~~~~ 447 (448)
T PLN02678 434 KKPPAKGKGKKKKK 447 (448)
T ss_pred CCcccccccccccC
Confidence 56666777777665
No 2
>PLN02320 seryl-tRNA synthetase
Probab=100.00 E-value=8.8e-68 Score=507.98 Aligned_cols=221 Identities=46% Similarity=0.823 Sum_probs=211.0
Q ss_pred chhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCc-cCCccCCCc
Q psy1870 6 CNALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADEKGV 84 (264)
Q Consensus 6 ~~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~-s~g~~~~GL 84 (264)
...+|++||++|++..+++|+|+ ++++||+||+|.++++++.+++++|++||++|+++|+|||+|+ |+|++++||
T Consensus 262 ~~~l~~~sG~~p~~e~~~~y~ie----~ed~~Li~TaE~Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~G~d~rGL 337 (502)
T PLN02320 262 RSSVVEKCGFQPRGDNTQVYSID----GSDQCLIGTAEIPVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGL 337 (502)
T ss_pred hHHHHHhcCCCcccccCceeEEC----CCceEEeecccccccccccccccCHhhCCceeEEeccccccccccCCCcCCCc
Confidence 45789999999998555999997 5789999999999999999999999999999999999999999 668999999
Q ss_pred eeeEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEecCC
Q psy1870 85 YRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSD 164 (264)
Q Consensus 85 ~R~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~ 164 (264)
+|+|||+|+|+|+||+|++++++++++++.+++||+.||||||++.++++|||++++++||||||||+++.|+||+||||
T Consensus 338 ~RvhQF~KvE~~if~~peqs~~e~e~ll~~~e~i~~~LgLpyrvv~l~tgDLg~~a~kkyDiEvW~P~~~~y~EvsS~SN 417 (502)
T PLN02320 338 YRVHQFSKVEMFVICRPEESESFHEELIQIEEDLFTSLGLHFKTLDMATADLGAPAYRKFDIEAWMPGLGRYGEISSASN 417 (502)
T ss_pred eeeeeeecccEEEEECHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCccchhhhheEEEEEEecCCCcEEEEeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhcccceeecC----------------C-CceeEEecccccHhHHHHHHHHhccccCCceeccCCccccccceeee
Q psy1870 165 CTDYQARRLNIRTED----------------G-KFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRII 227 (264)
Q Consensus 165 ~~D~qa~rl~i~y~~----------------~-~~~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i 227 (264)
|+||||||++|+|++ . .|+||+||||||++|+|+|||||||++||+|.||++|+|||+|..+|
T Consensus 418 c~DfQaRRl~iryr~~~~~~~~~~~~k~~~~~~~~vHTLNgTalAv~R~l~AILENyQ~~dGsi~IP~vLrpym~g~~~I 497 (502)
T PLN02320 418 CTDYQSRRLGIRYRPSEPPQTNPKKGKGSLGPTKFVHTLNATACAVPRMIVCLLENYQQEDGSVVIPEPLRPFMGGLELI 497 (502)
T ss_pred hhhHhhhcccceeccccccccccccccccCCCcceeEecccchhHHHHHHHHHHHhCcCCCCcEECChhhhhhcCCCccc
Confidence 999999999999984 1 49999999999999999999999999999999999999999988888
Q ss_pred cCC
Q psy1870 228 GDT 230 (264)
Q Consensus 228 ~~~ 230 (264)
+|+
T Consensus 498 ~~~ 500 (502)
T PLN02320 498 KPK 500 (502)
T ss_pred CCC
Confidence 754
No 3
>KOG2509|consensus
Probab=100.00 E-value=6.6e-68 Score=491.80 Aligned_cols=226 Identities=46% Similarity=0.741 Sum_probs=211.6
Q ss_pred chhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCc-cCCccCCCc
Q psy1870 6 CNALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADEKGV 84 (264)
Q Consensus 6 ~~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~-s~g~~~~GL 84 (264)
...|.++||++|++++++.|.+. + +++.||++|||++|+++++++++...+||++++.+|+|||.|+ ++|++++||
T Consensus 214 rkeVm~~cg~~~~~d~~~~y~ld-~--~~~~~LiaTaE~plAa~~~~e~~~~~~lPiK~vg~S~CfR~EaGs~G~d~~Gl 290 (455)
T KOG2509|consen 214 RKEVMQKCGQLPRFDEEQYYVLD-G--GDEKYLIATAEQPLAAYHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGL 290 (455)
T ss_pred hHHHHHHhccCcCCCcceEEeec-C--CccceeEeeccchhhhhhcccccccccCceeeeehhHHHHHHhhhcccccccc
Confidence 46788999999998555555554 3 4689999999999999999999999999999999999999999 889999999
Q ss_pred eeeEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEecCC
Q psy1870 85 YRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSD 164 (264)
Q Consensus 85 ~R~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~ 164 (264)
||||||+++|||++|.|++|++++++|++.++++|+.||||||++.+++++||+.|+++||||+|||+.+.|+|++||||
T Consensus 291 yRVHqF~KVE~Fvit~Pe~S~~~~eEmi~~~eef~qsLgip~rvl~m~S~eLg~aAakKyDiEAWmPgrg~ygEl~ScSN 370 (455)
T KOG2509|consen 291 YRVHQFEKVEQFVITGPEDSWEMLEEMINNQEEFYQSLGLPYRVLNMPSGELGAAAAKKYDIEAWMPGRGAYGELVSCSN 370 (455)
T ss_pred eeeeeeeeeEEEEecCcchhHHHHHHHHHHHHHHHHHhCCceeEecCCchhhCcHHHhhcchhhhcCccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhcccceeecCC-------CceeEEecccccHhHHHHHHHHhccccCCceeccCCccccccceeeecCCCCCCc
Q psy1870 165 CTDYQARRLNIRTEDG-------KFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDTRGAPS 235 (264)
Q Consensus 165 ~~D~qa~rl~i~y~~~-------~~~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~~~~~~~~ 235 (264)
|+|||||||+|+|... +|+||+|||+||++|+|+|||||||++|| |.+|++|+|||++..+||.....|.
T Consensus 371 CTDyQSRRL~IRy~~~k~~~~~~~yvHtLN~TacA~~R~l~aiLEnyQ~edG-i~VPe~Lr~ym~~~~~ip~~k~~p~ 447 (455)
T KOG2509|consen 371 CTDYQSRRLGIRYGQKKTNDGEKKYVHTLNGTACATPRALCAILENYQTEDG-IEVPEVLRPYMGGQEFIPFVKPAPK 447 (455)
T ss_pred chhHHHhhhhhhcccccccCCccceeeecchhhHhhhHHHHHhHhhccCCCC-ccCCHhHHhhcCCcccccccccCCc
Confidence 9999999999999952 49999999999999999999999999999 9999999999999788876666555
No 4
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=100.00 E-value=7.7e-65 Score=484.57 Aligned_cols=218 Identities=37% Similarity=0.616 Sum_probs=210.1
Q ss_pred hhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCc-cCCccCCCce
Q psy1870 7 NALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADEKGVY 85 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~-s~g~~~~GL~ 85 (264)
..+|++||++|.+ +++||+|+ ++++||+||+|++++++++++++||++||++++|+|+|||+|+ ++|++++||+
T Consensus 201 ~~~~~~~G~~~~f-~~~ly~i~----~~~~~L~pTsE~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~ 275 (425)
T PRK05431 201 EESMYGTGQLPKF-EEDLYKIE----DDDLYLIPTAEVPLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLI 275 (425)
T ss_pred HHHHhhcCccccc-hhhceEec----CCCEEEEeCCcHHHHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCcee
Confidence 4689999999999 88999997 5679999999999999999999999999999999999999999 6689999999
Q ss_pred eeEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEecCCc
Q psy1870 86 RVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDC 165 (264)
Q Consensus 86 R~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~ 165 (264)
|+|||+|+|+|+||+|++|+++|+++++++++||+.||||||++.++++|||++++++||+|+|+|+++.|+|++|||||
T Consensus 276 Rv~qF~k~E~~~f~~~e~s~~~~~~~l~~~~~i~~~Lglpyr~v~~~s~dlg~~a~~~~DiE~w~p~~~~~~ev~s~snc 355 (425)
T PRK05431 276 RVHQFDKVELVKFTKPEDSYAELEELTANAEEILQKLELPYRVVLLCTGDLGFSAAKTYDLEVWLPSQNTYREISSCSNC 355 (425)
T ss_pred eeeeeeeeeEEEEECHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCCcccCCchHheecHHHhCcccCCeeEEEEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhcccceeecCC-----CceeEEecccccHhHHHHHHHHhccccCCceeccCCccccccceeeecC
Q psy1870 166 TDYQARRLNIRTEDG-----KFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGD 229 (264)
Q Consensus 166 ~D~qa~rl~i~y~~~-----~~~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~~ 229 (264)
+||||+|++|+|.+. .++||+||||+|++|+|+|||||||+++|+|+||+.|+||+++..+|++
T Consensus 356 ~d~qsrr~~i~~~~~~~~~~~~~htln~t~~a~~R~l~ailE~~q~~~g~i~iP~~l~py~~~~~~i~~ 424 (425)
T PRK05431 356 TDFQARRANIRYRDEGDGKPELVHTLNGSGLAVGRTLVAILENYQQADGSVTIPEVLRPYMGGLEVIPP 424 (425)
T ss_pred cchhhhhcCcEEecCCCCceeEEEEeCCchhhHHHHHHHHHHHCCCCCCcEECChhhhcccCCCCccCC
Confidence 999999999999965 3999999999999999999999999999999999999999998888865
No 5
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.4e-65 Score=478.77 Aligned_cols=216 Identities=41% Similarity=0.683 Sum_probs=208.4
Q ss_pred hhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCc-cCCccCCCceeeE
Q psy1870 10 ECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADEKGVYRVH 88 (264)
Q Consensus 10 ~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~-s~g~~~~GL~R~r 88 (264)
-.+||++|++ ++++|++. +.++||+||+|++++++++++++...+||++++.+|+|||.|+ |+|++++||+|+|
T Consensus 207 m~gtgqlpkf-~e~~y~v~----~~~~~LipTaEvpl~~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvH 281 (429)
T COG0172 207 MFGTGQLPKF-EEDLYKVE----DPDLYLIPTAEVPLTNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVH 281 (429)
T ss_pred hhccCCCCCC-cccceEec----CCCEEEEecchhhhHHhhcccccccccCCeeeEEEChhhhcccccccccccceeeee
Confidence 3499999997 99999999 4589999999999999999999999999999999999999999 8899999999999
Q ss_pred EEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEecCCccch
Q psy1870 89 CFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDY 168 (264)
Q Consensus 89 eF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~ 168 (264)
||.|+|++.||+|++|++++++|++.++++++.|+||||++.+|+||||+++.++||+|+|+|+++.|+|++|||||+||
T Consensus 282 QF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~LeLPyRvv~lctGDlgf~a~kkYDlEvWlP~q~~yrEisScSnc~Df 361 (429)
T COG0172 282 QFDKVELVVITKPEESEEELEEMLGNAEEVLQELELPYRVVNLCTGDLGFSAAKKYDLEVWLPGQNKYREISSCSNCTDF 361 (429)
T ss_pred eeeeEEEEEEeCcchhHHHHHHHHHHHHHHHHHhCCCceEeeeccCCcCCcccCceeEEEEecCCCCceeeeeeeccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccceeecCC-----CceeEEecccccHhHHHHHHHHhccccCCceeccCCccccccceeeecCC
Q psy1870 169 QARRLNIRTEDG-----KFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDT 230 (264)
Q Consensus 169 qa~rl~i~y~~~-----~~~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~~~ 230 (264)
|++|++|+|++. .|+||+||||++++|+++|+|||||++||++.+|++|.||+++..+|+++
T Consensus 362 QaRR~~~Ryr~~~~~k~~~vhTLNGsglA~~R~l~AilENyq~~dG~v~IPevL~~y~gg~~~i~~~ 428 (429)
T COG0172 362 QARRLNIRYRDKEEGKREFVHTLNGSGLAVGRTLVAILENYQQEDGSVKIPEVLRPYMGGLEIIPKP 428 (429)
T ss_pred HHHHHhcccccccCCCcEEEEeccchHHHHHHHHHHHHHcccCCCCCeeccHHHHhhCCcceecCCC
Confidence 999999999864 39999999999999999999999999999999999999999998888765
No 6
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=100.00 E-value=1.4e-61 Score=461.25 Aligned_cols=211 Identities=42% Similarity=0.667 Sum_probs=202.3
Q ss_pred chhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCc-cCCccCCCc
Q psy1870 6 CNALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADEKGV 84 (264)
Q Consensus 6 ~~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~-s~g~~~~GL 84 (264)
...+|++||+++.+ +++||+|+ ++++||+||+|++++++++++++||++||++++|+|+|||+|+ ++|++++||
T Consensus 202 ~~~~~~~~G~~~~f-~~~~y~i~----~~~~~L~pTsE~~~~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL 276 (418)
T TIGR00414 202 NEESLDGTGQLPKF-EEDIFKLE----DTDLYLIPTAEVPLTNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGL 276 (418)
T ss_pred cHHHHhhcCccccc-cccceEec----CCCEEEEeCCcHHHHHHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCcc
Confidence 35689999998877 88999997 5679999999999999999999999999999999999999999 568999999
Q ss_pred eeeEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEecCC
Q psy1870 85 YRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSD 164 (264)
Q Consensus 85 ~R~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~ 164 (264)
+|+|||+|+|+|+||+|++|+++|+++++.+++||+.|||||+++.++++|+|++++++||+|+|+|+++.|.|++||||
T Consensus 277 ~Rv~qF~k~E~~~f~~~e~s~~~~~~~~~~~~~i~~~Lglp~r~v~~~t~dlg~~a~~~ydiE~w~p~~~~~~ev~s~sn 356 (418)
T TIGR00414 277 IRVHQFNKVELVKFCKPEESAEELEEMTSDAEQILQELELPYRVVNLCSGDLGFSAAKKYDLEVWMPGQNTYREISSCSN 356 (418)
T ss_pred ccccceeeeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCccccccCHhhhhhHHHhCCCcCceEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhcccceeecCC-----CceeEEecccccHhHHHHHHHHhccccCCceeccCCccccc
Q psy1870 165 CTDYQARRLNIRTEDG-----KFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFM 221 (264)
Q Consensus 165 ~~D~qa~rl~i~y~~~-----~~~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~ 221 (264)
|+|||++|++|+|.+. .++||+||||+|++|+|+||||+||+++|.++||.+|+|||
T Consensus 357 ~~d~qsrr~~i~y~~~~~~~~~~vh~ln~~~~ai~R~i~Aile~~~~~~G~i~iP~~l~py~ 418 (418)
T TIGR00414 357 CTDFQARRLNIRYKDKNKGKNKYVHTLNGTALAIGRTIVAILENYQTEDGSVEIPEVLRKYL 418 (418)
T ss_pred cchHhHHhCCcEEECCCCCceEEEEeecCcchHHHHHHHHHHHHccCCCCCEeCChhccccC
Confidence 9999999999999864 39999999999999999999999999999899999999997
No 7
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=100.00 E-value=5.7e-59 Score=425.98 Aligned_cols=211 Identities=44% Similarity=0.729 Sum_probs=201.0
Q ss_pred chhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCcc-CCccCCCc
Q psy1870 6 CNALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEIS-VVADEKGV 84 (264)
Q Consensus 6 ~~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s-~g~~~~GL 84 (264)
...+|++||+++.+ +++||+++ +++++|+||+|++++++++++++||++||++++|+|+|||+|++ +|++++||
T Consensus 81 ~~~l~~~sg~~~~~-~~~~f~v~----~~~~~L~pt~e~~~~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL 155 (297)
T cd00770 81 RKEVMEGTGQLPKF-DEQLYKVE----GEDLYLIATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGL 155 (297)
T ss_pred cHHHHhhcCcCccC-hhcccEec----CCCEEEeecCCHHHHHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCc
Confidence 35789999999977 88999997 46799999999999999999999999999999999999999994 57899999
Q ss_pred eeeEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEecCC
Q psy1870 85 YRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSD 164 (264)
Q Consensus 85 ~R~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~ 164 (264)
+|+|||+|+|+|+||+|++++++++++++.+.++|++|||||++++++++|+|++++++||+|+|+|++++|.|+++||+
T Consensus 156 ~R~reF~~~e~~~f~~~e~~~~~~~~~l~~~~~i~~~lgl~~~~~~~~~~dl~~~~~~~~d~e~~~p~~~~~~e~~s~s~ 235 (297)
T cd00770 156 FRVHQFEKVEQFVFTKPEESWEELEELISNAEEILQELGLPYRVVNICTGDLGFAAAKKYDIEAWMPGQGKYREISSCSN 235 (297)
T ss_pred eEEEeeeeeeEEEEECchHHHHHHHHHHHHHHHHHHHcCCcEEEEEccCccccCchhhheeeheecCCCCCeEEEEEccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhcccceeecCC-----CceeEEecccccHhHHHHHHHHhccccCCceeccCCccccc
Q psy1870 165 CTDYQARRLNIRTEDG-----KFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFM 221 (264)
Q Consensus 165 ~~D~qa~rl~i~y~~~-----~~~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~ 221 (264)
|+|||++|++|+|.+. .++|++||||+|++|+|+||||||++++|.+.+|..|+||+
T Consensus 236 ~~d~~s~r~~i~y~~~~~~~~~~~~~~~~~~~~~~R~l~alle~~~~~~g~v~~P~~l~py~ 297 (297)
T cd00770 236 CTDFQARRLNIRYRDKKDGKKQYVHTLNGTALATPRTIVAILENYQTEDGSVVIPEVLRPYM 297 (297)
T ss_pred ccChhhhhcCcEEecCCCCCeeeeeEecccchHHHHHHHHHHHhCcCCCCcEeCchhhcccC
Confidence 9999999999999854 39999999999999999999999999999778889999996
No 8
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=100.00 E-value=1.1e-49 Score=357.42 Aligned_cols=190 Identities=19% Similarity=0.208 Sum_probs=179.6
Q ss_pred hhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCcee
Q psy1870 7 NALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYR 86 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R 86 (264)
..+|.++|+++.+ .++||++.++. +++++|+||+|.++++++++++.|+++||+++||+++|||+|+ ++++||+|
T Consensus 61 ~~~~~~sg~~~~~-~~emy~~~d~~-~~~l~LrPt~e~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~---~~~~Gl~R 135 (255)
T cd00779 61 AELWKESGRWDAY-GPELLRLKDRH-GKEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEI---RPRFGLMR 135 (255)
T ss_pred HHHHHhcCCcccc-CcccEEEecCC-CCeEEEecCCcHHHHHHHHhccccHhhCCHHHHhCcceecCCC---CCCCceee
Confidence 4578899999987 88999999876 6889999999999999999999999999999999999999998 46899999
Q ss_pred eEEEEEeeEEEEcCcc-hHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEecCCc
Q psy1870 87 VHCFTKIEMFGVTLPE-DSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDC 165 (264)
Q Consensus 87 ~reF~~~E~~~f~~pe-~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~ 165 (264)
+|||+|+|+|+|+.++ +|+++++++++++.++|+.|||||+++..+++++|+..+++||+|+|||+.+ +.|++|||||
T Consensus 136 ~reF~q~e~~~~~~~~~~a~~~~~~i~~~~~~il~~Lgl~~~~~~~~~~~~gg~~s~~~~~e~~~~~~~-~~e~~s~~~l 214 (255)
T cd00779 136 GREFLMKDAYSFDIDEESLEETYEKMYQAYSRIFKRLGLPFVKVEADSGAIGGSLSHEFHVLSPLKITK-GIEVGHIFQL 214 (255)
T ss_pred eeeEeHhhheeccCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcccEEEEEEEecCCCC-eEEEEeeeec
Confidence 9999999999999974 8999999999999999999999999999999999999999999999999975 8999999999
Q ss_pred cchhhcccceeecCC----CceeEEecccccHhHHHHHHHHh
Q psy1870 166 TDYQARRLNIRTEDG----KFAHTLNGTACAIPRLLMALVET 203 (264)
Q Consensus 166 ~D~qa~rl~i~y~~~----~~~ht~~gtg~~v~Rll~alLE~ 203 (264)
+|+||+||+|+|.++ +++|| ||||+||+|+|+|||||
T Consensus 215 g~~~sr~~~i~~~~~~~~~~~~~~-~~~gi~~~R~l~ai~e~ 255 (255)
T cd00779 215 GTKYSKALGATFLDENGKPKPLEM-GCYGIGVSRLLAAIIEQ 255 (255)
T ss_pred chhHHHhcCcEEECCCCCEEeeEe-cCccchHHHHHHHHHcC
Confidence 999999999999976 49999 99999999999999996
No 9
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=1.2e-47 Score=346.02 Aligned_cols=191 Identities=17% Similarity=0.158 Sum_probs=177.0
Q ss_pred hhhhhhcCCCCCCCCCceEEeecCCCC----CceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCC
Q psy1870 7 NALECNSKINSKGERSQIYHLEPNYYG----NGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEK 82 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~~~~~~----~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~ 82 (264)
..+|+++|++++++.+++|++.++. + ++++|+||+|+++++++++++.||++||++++|+++|||+|+ ++++
T Consensus 62 ~~~~~~~g~~~~~~~~e~~~~~~~~-~~~~~~~l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~---r~~~ 137 (264)
T cd00772 62 ASFLEKEAEHDEGFSKELAVFKDAG-DEELEEDFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEI---RPRF 137 (264)
T ss_pred HHHHhhcCCcccccCccceEEEeCC-CCccCceEEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcC---CCCC
Confidence 3578999999999778999998875 4 789999999999999999999999999999999999999998 4689
Q ss_pred CceeeEEEEEeeEEEE-cCcchHHHHHHHHHHHHHHHHHHhC-CceEEEEccCCCcCchhhcccceeeecCcccccceeE
Q psy1870 83 GVYRVHCFTKIEMFGV-TLPEDSEKQLEQFLQFEESLFGELG-IHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELS 160 (264)
Q Consensus 83 GL~R~reF~~~E~~~f-~~pe~s~~~~~~~~~~~~~i~~~Lg-lpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~ 160 (264)
||+|+|||+|+|+|+| +++++|++++..++++|++||+.|| |||+++.++++|++.+++++||+|+|||. +.+.++.
T Consensus 138 Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~~~~i~~~l~~lp~~~~~~~~~d~~~g~~~~~d~e~~~p~-~~~~~~~ 216 (264)
T cd00772 138 GFLRAREFIMKDGHSAHADAEEADEEFLNMLSAYAEIARDLAAIDFIEGEADEGAKFAGASKSREFEALMED-GKAKQAE 216 (264)
T ss_pred CcceeeEEEEeeeEEecCCHHHHHHHHHHHHHHHHHHHHhcCCccEEEEEcCCCccccCCcCCEEEEEECCC-CCEeEEE
Confidence 9999999999999999 7889999999999999999999999 99999999999999999999999999994 4678888
Q ss_pred ecCCccchhhcccc--eeecCC----CceeEEecccccHhHHHHHHHHh
Q psy1870 161 SCSDCTDYQARRLN--IRTEDG----KFAHTLNGTACAIPRLLMALVET 203 (264)
Q Consensus 161 s~s~~~D~qa~rl~--i~y~~~----~~~ht~~gtg~~v~Rll~alLE~ 203 (264)
+||+|+|+|+++++ |+|.++ .++|| ||||+|++|+|+||||+
T Consensus 217 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-n~~gi~~~R~l~aile~ 264 (264)
T cd00772 217 TGHIFGEGFARAFDLKAKFLDKDGKEKFFEM-GCWGIGISRFIGAIIEQ 264 (264)
T ss_pred eeeeccCCchhhcCCccEEECCCCCEEEEEe-ccccchHHHHHHHhhcC
Confidence 88889999999555 999875 49999 99999999999999984
No 10
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.1e-48 Score=372.76 Aligned_cols=220 Identities=19% Similarity=0.290 Sum_probs=199.7
Q ss_pred hhhhhhcCCCCCCCCCceEEeecCC----------------------------CCCceEEeCCchHHHHHHHhccccCCC
Q psy1870 7 NALECNSKINSKGERSQIYHLEPNY----------------------------YGNGWCLSGTAEMGIARYLMNQTLPES 58 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~~~~----------------------------~~~~~~L~pTaE~~i~~l~~~~~~syr 58 (264)
..+|++||+++.+ +++||+++... .+..++|+|++|.+++.+|+++++|++
T Consensus 254 ~ell~ksGhl~~F-~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~~~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~r 332 (517)
T PRK00960 254 LEVMYKMRYLEGL-PEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIEKLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVD 332 (517)
T ss_pred HHHHhhcCCccCC-hhhceEeeccccccccccchhhhccccccccccccccccccccccccccCcHHHHHHHhCCcCChh
Confidence 4577799999998 88999996311 024579999999999999999999999
Q ss_pred CCcceEEEec-ceeccCccCCccCCCceeeEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCc-eEEEE------
Q psy1870 59 QLPKQIAAMS-KCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIH-TRTLN------ 130 (264)
Q Consensus 59 ~LPl~l~q~s-~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglp-yr~v~------ 130 (264)
+||+++++++ +|||+|. + .++||+|+|||+|+|+|+||+|+|++++++++++.++.+++.|||| ||++.
T Consensus 333 dLPLrl~e~sG~cFR~Es-G--s~~GL~RV~eF~kvE~h~f~tpEqs~ee~e~ll~~~e~i~~~LgLp~~r~v~~DPFf~ 409 (517)
T PRK00960 333 ELPIKFFDRSGWTYRWEG-G--GAHGLERVNEFHRIEIVWLGTPEQVEEIRDELLKYAHILAEKLDLEYWREVGDDPFYL 409 (517)
T ss_pred hCCHHHhhccCCceeCCC-C--CCCCCcccceeEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCceEEeccccccc
Confidence 9999999955 9999995 2 4899999999999999999999999999999999999999999999 89888
Q ss_pred ----ccCCCcCchhhcccceeeecC---cccccceeEecCCccchhhcccceeecCCCceeEEecccccHhHHHHHHHHh
Q psy1870 131 ----MGANELGAQAYKKYDVEAWMP---GRKHWGELSSCSDCTDYQARRLNIRTEDGKFAHTLNGTACAIPRLLMALVET 203 (264)
Q Consensus 131 ----~~~~dl~~~a~~~ydiE~w~p---~~~~~~Ev~s~s~~~D~qa~rl~i~y~~~~~~ht~~gtg~~v~Rll~alLE~ 203 (264)
++++||++.+..+||+|+|+| +++.|.|++|||+|+|||++||+|+|.+.+.+|| ||+|+|++|+++|||||
T Consensus 410 ~~~k~~~~d~~f~~~~tydiE~wmP~~~~~gk~~ev~S~S~hgd~farrfnIk~~~g~~~hT-nctG~g~eR~l~AlLe~ 488 (517)
T PRK00960 410 EGRGLEDRGIEFPDVPKYEMELWLPYRGDERKWVAVTSANVHGTHFVEGFNIKDYKGRKLWT-GCTGYGLERWVIGFLAQ 488 (517)
T ss_pred ccCccccccccCccccceeEEEEecCccCCCCEEEEEeeeeccchhhHhhCcccCCCCeEee-cceeeHHHHHHHHHHHh
Confidence 788899999999999999999 7789999999999999999999999976678999 99999999999999999
Q ss_pred ccccCCceeccCCccccccceeeecCCCCCCc-cccc
Q psy1870 204 HQNQDGTVNIPECLQPFMFNKRIIGDTRGAPS-LVKV 239 (264)
Q Consensus 204 ~~~~~G~i~lP~~LaP~~~~~~~i~~~~~~~~-~~~~ 239 (264)
|+.++| .||+.|+||++ .-|+.|+ +|||
T Consensus 489 hG~d~~--~wPe~~r~~~~------~~~~~~~~~~~~ 517 (517)
T PRK00960 489 KGFDPE--NWPEEIRKRVG------ELPEGPKFLTWP 517 (517)
T ss_pred cCCCCC--cCCHHHHHhhc------CCCcCceeccCC
Confidence 999998 99999999995 4566777 8986
No 11
>KOG2324|consensus
Probab=100.00 E-value=5.8e-47 Score=344.56 Aligned_cols=217 Identities=20% Similarity=0.350 Sum_probs=183.3
Q ss_pred hhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccc-cCCCCCcceEEEecceeccCccCCccCCCce
Q psy1870 7 NALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQT-LPESQLPKQIAAMSKCYRAEISVVADEKGVY 85 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~-~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~ 85 (264)
..||+++|+|... ++|+|++.||. ++++||.||||+.+++++++.+ +||+|||+++||++++||||. +++.||+
T Consensus 82 ~~LWekTgRw~~~-gsEl~rl~Dr~-gkq~cL~pThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDEl---rpRfGLl 156 (457)
T KOG2324|consen 82 KELWEKTGRWDAM-GSELFRLHDRK-GKQMCLTPTHEEDITALMATYIPLSYKQLPIRVYQIGRKFRDEL---RPRFGLL 156 (457)
T ss_pred HHHHHhcCccccc-chhheEeeccC-CCEeccCCchHHHHHHHHHhcCccccccCcEEeeeechhhhhcc---Cccccch
Confidence 5799999999999 88999999999 9999999999999999999977 599999999999999999999 6899999
Q ss_pred eeEEEEEeeEEEEcCcc-hHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhccccee--------eecCccc--
Q psy1870 86 RVHCFTKIEMFGVTLPE-DSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVE--------AWMPGRK-- 154 (264)
Q Consensus 86 R~reF~~~E~~~f~~pe-~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE--------~w~p~~~-- 154 (264)
|.|||.|+|||+|+.++ .|+++|+.+.++|.+||++||+||..|++++|++|+.-||+|++- ..+|+++
T Consensus 157 RgREFlMKDmYsFd~~~etA~qTy~~v~~aY~~iFkqL~~pfVkv~AdsG~iGG~vShEfhl~~~vgED~l~~C~~C~~s 236 (457)
T KOG2324|consen 157 RGREFLMKDMYSFDSDEETAQQTYQLVDQAYDRIFKQLGLPFVKVWADSGDIGGEVSHEFHLIHPVGEDTLMSCPSCGYS 236 (457)
T ss_pred hhHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeecccccCceeeeeEeccCccCccceeecCcCCcc
Confidence 99999999999999885 699999999999999999999999999999999999999999742 2233321
Q ss_pred ---cc---ceeEecCCccchhhc-----------ccceeecCC-----------C-ceeEEecccccHhHHHHHHHHhcc
Q psy1870 155 ---HW---GELSSCSDCTDYQAR-----------RLNIRTEDG-----------K-FAHTLNGTACAIPRLLMALVETHQ 205 (264)
Q Consensus 155 ---~~---~Ev~s~s~~~D~qa~-----------rl~i~y~~~-----------~-~~ht~~gtg~~v~Rll~alLE~~~ 205 (264)
.. -.+.+|.+|.+-+.. -|+.+|+.+ + ++| |+|+|+||+|+|+|.+|..+
T Consensus 237 ~n~e~~~~sk~~~Cp~C~~~~L~~~~~IEVgHtF~LG~kYS~~lna~f~~~~gKpe~l~-MgCyGIGVtRllaAa~evls 315 (457)
T KOG2324|consen 237 KNSEDLDLSKIASCPKCNEGRLTKTKSIEVGHTFLLGTKYSKPLNAKFVNVEGKPEFLH-MGCYGIGVTRLLAAAAEVLS 315 (457)
T ss_pred CchhhhcCCccccCCcccCCCcccccceEEEEEEEeccccccccCceeeeecCCcceEE-ecceeccHHHHHHHHHHHhc
Confidence 00 111344444331110 155566544 2 566 68999999999999999999
Q ss_pred ccCCceeccCCccccccceeeecCCCC
Q psy1870 206 NQDGTVNIPECLQPFMFNKRIIGDTRG 232 (264)
Q Consensus 206 ~~~G~i~lP~~LaP~~~~~~~i~~~~~ 232 (264)
+++| ++||..||||+ +|+|.|+..
T Consensus 316 ~~~~-lrwP~~iAPy~--vcli~pk~~ 339 (457)
T KOG2324|consen 316 DDKG-LRWPSLIAPYK--VCLIGPKKG 339 (457)
T ss_pred cccc-cccccccCcce--eEEeccCCc
Confidence 9998 99999999999 788888754
No 12
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=100.00 E-value=1.3e-45 Score=332.08 Aligned_cols=187 Identities=18% Similarity=0.176 Sum_probs=172.8
Q ss_pred hhhhcCCCCCCCCCceEEeecCCC---CCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCce
Q psy1870 9 LECNSKINSKGERSQIYHLEPNYY---GNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVY 85 (264)
Q Consensus 9 l~~~~G~~~~~~~~~ly~i~~~~~---~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~ 85 (264)
++.++|+++.+ .++||++.++.. +++++|+||+|++++.++++++.||++||++++|+++|||+|++ +++||+
T Consensus 65 ~~~~sg~~~~f-~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~---~~~Gl~ 140 (261)
T cd00778 65 LEKEKEHIEGF-APEVAWVTHGGLEELEEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETK---TTRPFL 140 (261)
T ss_pred hhhhhcchhhc-CcceEEEEecCCcccCCcEEEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCC---CCCcee
Confidence 34679999998 889999987641 24799999999999999999999999999999999999999994 579999
Q ss_pred eeEEEEEeeEEE-EcCcchHHHHHHHHHHHHHHHHHHh-CCceEEEEccCCCcCchhhcccceeeecCcccccceeEecC
Q psy1870 86 RVHCFTKIEMFG-VTLPEDSEKQLEQFLQFEESLFGEL-GIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCS 163 (264)
Q Consensus 86 R~reF~~~E~~~-f~~pe~s~~~~~~~~~~~~~i~~~L-glpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s 163 (264)
|+|||+|+|+|+ ||++++++++++++++++++||+.| ||||+++..+++|++.++.++||+|+|+| .+++.|++||+
T Consensus 141 R~reF~~~d~h~~~~~~e~~~~~~~~~~~~~~~i~~~llgl~~~~~~~~~~d~~~~a~~~~~ie~~~p-~~~~~ev~s~~ 219 (261)
T cd00778 141 RTREFLWQEGHTAHATEEEAEEEVLQILDLYKEFYEDLLAIPVVKGRKTEWEKFAGADYTYTIEAMMP-DGRALQSGTSH 219 (261)
T ss_pred EeeeeeeeceeeccCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecCCccccCCCCccceEEEEEee-CCCEEEEEecc
Confidence 999999999986 8999999999999999999999999 99999999999999999999999999999 78999999999
Q ss_pred CccchhhcccceeecCC----CceeEEecccccHhHHHHHHHH
Q psy1870 164 DCTDYQARRLNIRTEDG----KFAHTLNGTACAIPRLLMALVE 202 (264)
Q Consensus 164 ~~~D~qa~rl~i~y~~~----~~~ht~~gtg~~v~Rll~alLE 202 (264)
+|+|+|++||+|+|.++ .++|+ +|+| +++|+|+|||.
T Consensus 220 ~l~~~~s~r~~i~y~~~~g~~~~~h~-~~~g-~~~R~i~ali~ 260 (261)
T cd00778 220 NLGQNFSKAFDIKYQDKDGQKEYVHQ-TSWG-ISTRLIGAIIM 260 (261)
T ss_pred ccccccchhcCCEEECCCCCCcCcEE-eccc-HHHHHHHHHHh
Confidence 99999999999999876 38999 8998 55999999985
No 13
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.5e-42 Score=335.82 Aligned_cols=211 Identities=19% Similarity=0.152 Sum_probs=190.4
Q ss_pred hhhhh-cCCCCCCCCCceEEeecCCC---CCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCC
Q psy1870 8 ALECN-SKINSKGERSQIYHLEPNYY---GNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKG 83 (264)
Q Consensus 8 ~l~~~-~G~~~~~~~~~ly~i~~~~~---~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~G 83 (264)
.+|++ +|+++.+ .++||++++++. +++++|+||+|++++.++++++.||+|||++++|++++||+|.+ ++|
T Consensus 75 ~~~~~~~~h~~~f-~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~~----~rg 149 (477)
T PRK08661 75 SLLEKEKEHVEGF-APEVAWVTHGGGEKLEEKLALRPTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWETK----TRP 149 (477)
T ss_pred HHHhhhcCchhhc-ccccEEEEccCCCccCceEEEecCCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCCC----CCC
Confidence 45655 6777766 889999987541 35799999999999999999999999999999999999999993 679
Q ss_pred ceeeEEEEEeeEEE-EcCcchHHHHHHHHHHHHHHHH-HHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEe
Q psy1870 84 VYRVHCFTKIEMFG-VTLPEDSEKQLEQFLQFEESLF-GELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSS 161 (264)
Q Consensus 84 L~R~reF~~~E~~~-f~~pe~s~~~~~~~~~~~~~i~-~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s 161 (264)
|+|+|||+|+|+|+ |+++++|++++.+++++|.++| +.|||||+.+..+.+++++++..+|++|+|+|+ ++..|+++
T Consensus 150 l~R~rEF~~~E~h~~~~~~eea~~e~~~~l~~y~~i~~~~Lglp~~~~~~~~~ekf~ga~~~~~ie~~~~d-gr~~q~gt 228 (477)
T PRK08661 150 FLRTREFLWQEGHTAHATEEEAEEETLEMLEIYKEFFEDYLAIPVIIGKKTEWEKFAGADYTYTIEAMMPD-GKALQAGT 228 (477)
T ss_pred cceeeeEEEcceeeeeCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEecChHHhhCCCcceeEEEEEeCC-CCEEEEEE
Confidence 99999999999998 6888999999999999999999 999999999999999999999999999999998 67889999
Q ss_pred cCCccchhhcccceeecCC----CceeEEecccccHhHHHHHHHHhccccCCceeccCCccccccceeeecC
Q psy1870 162 CSDCTDYQARRLNIRTEDG----KFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGD 229 (264)
Q Consensus 162 ~s~~~D~qa~rl~i~y~~~----~~~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~~ 229 (264)
+++++++++++|+|+|.++ +++|+. ++|++ +|+|++|||+|++++| ++||+++||++ +.||+.
T Consensus 229 ~~~Lg~~~s~~f~i~y~d~~g~~~~v~~~-s~G~~-~R~i~alie~~~D~~G-l~lP~~iAP~q--V~Iipi 295 (477)
T PRK08661 229 SHYLGQNFAKAFDIKFQDKDGKLEYVHQT-SWGVS-TRLIGALIMTHGDDKG-LVLPPKIAPIQ--VVIVPI 295 (477)
T ss_pred ecccccchhHhcCCEEECCCCCEeeeEEe-cccHH-HHHHHHHHHHhCccCC-CccCcccCCCe--EEEEEe
Confidence 9999999999999999877 488875 77766 9999999999999998 99999999999 556654
No 14
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=100.00 E-value=9.3e-43 Score=336.77 Aligned_cols=212 Identities=19% Similarity=0.222 Sum_probs=192.1
Q ss_pred hhhhhcCCCCCCCCCceEEeecCCC---CCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCc
Q psy1870 8 ALECNSKINSKGERSQIYHLEPNYY---GNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGV 84 (264)
Q Consensus 8 ~l~~~~G~~~~~~~~~ly~i~~~~~---~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL 84 (264)
.+|+++|.+-.+|.++||++++++. +++++|+||+|++++.++++++.||++||++++|++++||+|.+ +++||
T Consensus 69 ~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~---~~~gl 145 (472)
T TIGR00408 69 SELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETK---HTRPF 145 (472)
T ss_pred HHHHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCC---CCCCc
Confidence 4667887655566999999998652 37899999999999999999999999999999999999999994 47999
Q ss_pred eeeEEEEEeeEEE-EcCcchHHHHHHHHHHHHHHHHH-HhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEec
Q psy1870 85 YRVHCFTKIEMFG-VTLPEDSEKQLEQFLQFEESLFG-ELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSC 162 (264)
Q Consensus 85 ~R~reF~~~E~~~-f~~pe~s~~~~~~~~~~~~~i~~-~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~ 162 (264)
+|+|||+|+|+|+ ||+++++++++..++++|.+||+ .||||++.+..+.++.+.++..++++|+|+|+. ++.|++++
T Consensus 146 ~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~y~~i~~~~lglp~~~~~~~~~ek~~ga~~~~~~e~~~~dg-r~~q~~t~ 224 (472)
T TIGR00408 146 LRTREFTWQEAHTAHATAEEAEEQVLRALDIYKEFIENSLAIPYFVGRKPEWEKFAGAEYTWAFETIMPDG-RTLQIATS 224 (472)
T ss_pred ceeeeeehhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhccCCeEEEEecCchhhcCCccceEEEeEEEcCC-CEEEEeee
Confidence 9999999999995 88999999999999999999997 999999999999889888899999999999994 78899999
Q ss_pred CCccchhhcccceeecCC----CceeEEecccccHhHHHHHHHHhccccCCceeccCCccccccceeeec
Q psy1870 163 SDCTDYQARRLNIRTEDG----KFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIG 228 (264)
Q Consensus 163 s~~~D~qa~rl~i~y~~~----~~~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~ 228 (264)
++|+++++++|+|+|.++ .++|+ +++|++ +|+|++|||+|++++| ++||+++||++ +.||+
T Consensus 225 ~~Lg~~~sk~f~i~y~~~~g~~~~~h~-~s~Gi~-eRli~~lie~~~d~~g-l~~P~~iaP~q--V~Iip 289 (472)
T TIGR00408 225 HNLGQNFAKTFEIKFETPTGDKEYAYQ-TSYGIS-TRVIGALIAIHSDEKG-LVLPPRVAPIQ--VVIIP 289 (472)
T ss_pred ecccccccHhcCCEEECCCCCEEeeEE-ccccHH-HHHHHHHHHHhCCCCc-eeeChhhCcce--EEEEE
Confidence 999999999999999987 38897 688765 9999999999999998 99999999999 56665
No 15
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=100.00 E-value=1.3e-39 Score=320.74 Aligned_cols=148 Identities=19% Similarity=0.224 Sum_probs=135.5
Q ss_pred hhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCcee
Q psy1870 7 NALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYR 86 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R 86 (264)
..||+++|+++.. +++||++.|+. +++++|+||||+.++.++++++.||++||+++||+++|||+|+ ++++||+|
T Consensus 77 ~el~~~sg~~~~~-~~emf~~~dr~-~~~l~LrPT~Ee~~t~~~~~~i~syr~LPlrlyqi~~~fR~E~---rpr~Gl~R 151 (568)
T TIGR00409 77 AELWQESGRWDTY-GPELLRLKDRK-GREFVLGPTHEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEI---RPRFGLMR 151 (568)
T ss_pred HHHHhhcCCCCcc-chhcEEEecCC-CCEEEEcCCCcHHHHHHHHHHHhhccccCeEEEEeeCEeeCCC---CCCCCccc
Confidence 4689999999987 88999999987 8899999999999999999999999999999999999999998 57899999
Q ss_pred eEEEEEeeEEEEcCcc-hHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEecC
Q psy1870 87 VHCFTKIEMFGVTLPE-DSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCS 163 (264)
Q Consensus 87 ~reF~~~E~~~f~~pe-~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s 163 (264)
+|||+|+|+|+|+.++ +++++|..++++|.+||++|||||+++.+++++||+.++++||++.+ .++.++.+|+
T Consensus 152 ~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~LgL~~~~v~~~~g~~gg~~s~ef~~~~~----~ge~~i~~c~ 225 (568)
T TIGR00409 152 GREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRLGLDFRPVQADSGAIGGSASHEFMVLAE----SGEDTIVYSD 225 (568)
T ss_pred cccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHhCCcceEEEeccccCCCccceEEeEecC----CCceEEEEec
Confidence 9999999999999985 67789999999999999999999999999999999999999998753 2445665555
No 16
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3e-39 Score=318.62 Aligned_cols=151 Identities=17% Similarity=0.244 Sum_probs=141.3
Q ss_pred hhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCcee
Q psy1870 7 NALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYR 86 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R 86 (264)
..||.++|+++.. .++||+++|+. +++++|+||+|+.++.++++++.||++||+++||+++|||+|+ ++++||+|
T Consensus 77 ~~l~~~sg~~~~~-~~emf~~~d~~-~~~l~LrPt~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~---rp~~Gl~R 151 (565)
T PRK09194 77 AELWQESGRWEEY-GPELLRLKDRH-GRDFVLGPTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEI---RPRFGLMR 151 (565)
T ss_pred HHHHhhcCCcccc-chhceEEecCC-CCEEEECCCChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCC---CCCCcccc
Confidence 4688999999888 88999999987 7899999999999999999999999999999999999999998 46899999
Q ss_pred eEEEEEeeEEEEcCcc-hHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEecCCc
Q psy1870 87 VHCFTKIEMFGVTLPE-DSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDC 165 (264)
Q Consensus 87 ~reF~~~E~~~f~~pe-~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~ 165 (264)
+|||+|+|+|+|+.++ +++++|++++++|.++|++|||||+++..++|+||+..+++| |+|++.++.++.+|++|
T Consensus 152 ~reF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~lgl~~~~~~~~~g~~gg~~s~e~----~~~~~~g~~~~~~c~~c 227 (565)
T PRK09194 152 GREFIMKDAYSFHADEESLDETYDAMYQAYSRIFDRLGLDFRAVEADSGAIGGSASHEF----MVLADSGEDTIVYSDES 227 (565)
T ss_pred cccEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHHhCCccEEEEcccccCCCceeEEE----EEecCCCceEEEEeCCC
Confidence 9999999999999875 678899999999999999999999999999999999999999 78898899999999887
Q ss_pred c
Q psy1870 166 T 166 (264)
Q Consensus 166 ~ 166 (264)
+
T Consensus 228 ~ 228 (565)
T PRK09194 228 D 228 (565)
T ss_pred C
Confidence 5
No 17
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=100.00 E-value=2.5e-39 Score=309.83 Aligned_cols=228 Identities=17% Similarity=0.177 Sum_probs=194.0
Q ss_pred CCCcchhhhh---------hcCCCCCCCCCceEEeecCC----------------------------CCCceEEeCCchH
Q psy1870 2 KLGHCNALEC---------NSKINSKGERSQIYHLEPNY----------------------------YGNGWCLSGTAEM 44 (264)
Q Consensus 2 ~~~~~~~l~~---------~~G~~~~~~~~~ly~i~~~~----------------------------~~~~~~L~pTaE~ 44 (264)
++||++.+++ +||+++.+ +++||+++... .+.+++|+||+|+
T Consensus 240 k~Gy~ev~fP~LIp~e~l~k~ghl~gF-~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~L~~~le~~~~vL~PTSE~ 318 (520)
T TIGR00415 240 KIGFQECLFPKLIPLDIMNKMRYLEGL-PEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCE 318 (520)
T ss_pred hcCCeEEeCCcEecHHHHcccCCCCCC-chhheEEecCCCCcchhhccccccccccccccccccccccCCceEEeCccHH
Confidence 4677777666 99999987 88999995211 0237899999999
Q ss_pred HHHHHHhccccCCCCCcceEEEec-ceeccCccCCccCCCceeeEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhC
Q psy1870 45 GIARYLMNQTLPESQLPKQIAAMS-KCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELG 123 (264)
Q Consensus 45 ~i~~l~~~~~~syr~LPl~l~q~s-~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lg 123 (264)
+++++++++++++++||++++|++ +|||+|++ .++||+|+|||+|+|+|++++|++|++.++++++.++++++.|+
T Consensus 319 ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaG---strGL~RvhEF~kvE~v~~~tpEea~e~~e~mle~~~~~l~~L~ 395 (520)
T TIGR00415 319 PFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAG---GAKGLDRVHEFLRVECVWIAEPEETEEIRDKTLELAEDAADELD 395 (520)
T ss_pred HHHHHHhccccChhhCCeeEEEEecCeEeCCCC---CCCCCceeeEEEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999966 79999984 37999999999999999999999999999999999999999999
Q ss_pred CceEEEEcc-----------CCCcCchhhcccceeeecCcccc---cceeEecCCccchhhcccceeecCCCceeEEecc
Q psy1870 124 IHTRTLNMG-----------ANELGAQAYKKYDVEAWMPGRKH---WGELSSCSDCTDYQARRLNIRTEDGKFAHTLNGT 189 (264)
Q Consensus 124 lpyr~v~~~-----------~~dl~~~a~~~ydiE~w~p~~~~---~~Ev~s~s~~~D~qa~rl~i~y~~~~~~ht~~gt 189 (264)
||||++..+ +++++++++.+||+|+|+|+... ...+.|++..+|.++++|+|+-.+..++||. |.
T Consensus 396 Lpyrv~~adDPFf~~g~k~~~~dl~F~~a~KyDlevwiP~~~~~~~g~AlqS~n~Hg~hF~k~F~I~~~~~~~a~tt-C~ 474 (520)
T TIGR00415 396 LEWWTEVGDDPFYLEGRKKEDRGIEFPDVPKYEMRLSLPGIEDERKGVAVTSANVHGTHFIEGFRIKDAKGLNIWTG-CT 474 (520)
T ss_pred CCeEEeecCCcccccccCcccccccCcccceEEEEEEEccccCCCCCcEEEEeechhcccccccCcccCCCCeEEEe-ee
Confidence 999998644 56789999999999999998774 3566777767999999999994444799985 99
Q ss_pred cccHhHHHHHHHHhccccCCceeccCCccccccceeeecCCCCCCc-ccccccc
Q psy1870 190 ACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDTRGAPS-LVKVKTG 242 (264)
Q Consensus 190 g~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~~~~~~~~-~~~~~~~ 242 (264)
|+|++|+++|||.+|+-+-. .||+.++--.++ -|+.|+ +|||+++
T Consensus 475 G~gleR~i~Ali~~HG~d~~--~Wp~~vr~~~~~------~~~~~~~~~~~~~~ 520 (520)
T TIGR00415 475 GIGISRWIVGFLAQKGFEFD--DWHDFIGEKIEG------LPENPQIITWPKKD 520 (520)
T ss_pred eccHHHHHHHHHHHhCCChh--hCCHHHHHHhcc------cccCceeeccCCCC
Confidence 99999999999999986433 699977666543 567788 9999753
No 18
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.5e-39 Score=308.78 Aligned_cols=214 Identities=16% Similarity=0.207 Sum_probs=184.7
Q ss_pred hhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCcee
Q psy1870 7 NALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYR 86 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R 86 (264)
..||+.+|+++.. .++||++.++. +++++|+||+|+.++.++++++.||++||+++||++++||+|.+ ++.||+|
T Consensus 77 ~~l~~~sg~~~~~-~~emf~~~d~~-~~~~~L~Pt~e~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~~---~~~GL~R 151 (439)
T PRK12325 77 ADLWRESGRYDAY-GKEMLRIKDRH-DREMLYGPTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIR---PRFGVMR 151 (439)
T ss_pred HHHHhhcCCcccc-chhheEEecCC-CCEEEEcCCCcHHHHHHHHHHhhhchhhchHheEecCEecCCCC---CCCCccc
Confidence 3689999999887 88999999887 78999999999999999999999999999999999999999984 5799999
Q ss_pred eEEEEEeeEEEEcCc-chHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccce-------eeec--------
Q psy1870 87 VHCFTKIEMFGVTLP-EDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDV-------EAWM-------- 150 (264)
Q Consensus 87 ~reF~~~E~~~f~~p-e~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydi-------E~w~-------- 150 (264)
+|||+|.|+|+||.+ +++.+++.+++++|.++|+.|||+|..+.++++.+|+..+++|.+ +.|.
T Consensus 152 ~reF~~~D~h~f~~~~~~a~~~~~~~~~~~~~i~~~lgl~~~~v~~~~~~~gg~~s~ef~~~~~~Ge~~~~~c~~~~~~~ 231 (439)
T PRK12325 152 GREFLMKDAYSFDLDEEGARHSYNRMFVAYLRTFARLGLKAIPMRADTGPIGGDLSHEFIILAETGESTVFYDKDFLDLL 231 (439)
T ss_pred cceEeEeccEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEccCCCCCCcceeeEeecCCCCceEEEcCCchhhc
Confidence 999999999999877 679999999999999999999999999999999999888888742 1111
Q ss_pred ------------------------------C-------ccc------ccceeEecCCccchhhcccceeecCC----Cce
Q psy1870 151 ------------------------------P-------GRK------HWGELSSCSDCTDYQARRLNIRTEDG----KFA 183 (264)
Q Consensus 151 ------------------------------p-------~~~------~~~Ev~s~s~~~D~qa~rl~i~y~~~----~~~ 183 (264)
+ ..+ .-.|++++.++++-.+++|+++|.++ ..+
T Consensus 232 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ievg~~~~lg~~ys~~f~~~y~d~~g~~~~i 311 (439)
T PRK12325 232 VPGEDIDFDVADLQPIVDEWTSLYAATEEMHDEAAFAAVPEERRLSARGIEVGHIFYFGTKYSEPMNAKVQGPDGKEVPV 311 (439)
T ss_pred cCCCcccCCHHHHHHHHhhhcccccchhhhhccCCCCcCCCcceeecceEEEEeeecCcccccHhcCCEEECCCCCEEeE
Confidence 0 000 01266677777776689999999988 266
Q ss_pred eEEecccccHhHHHHHHHHhccccCCceeccCCccccccceeeecC
Q psy1870 184 HTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGD 229 (264)
Q Consensus 184 ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~~ 229 (264)
| ++|+|+|++|+|++|+|+|.|+.| +.||.|++|++ +.||+.
T Consensus 312 ~-~~~~GiGieRli~~l~e~~~d~~g-~~~P~~iaP~q--V~Iipi 353 (439)
T PRK12325 312 H-MGSYGIGVSRLVAAIIEASHDDKG-IIWPESVAPFK--VGIINL 353 (439)
T ss_pred E-EeeeECCHHHHHHHHHHHhCccCC-CcCCCCcCCeE--EEEEec
Confidence 7 579999999999999999999988 89999999999 566665
No 19
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=100.00 E-value=6.2e-38 Score=310.57 Aligned_cols=213 Identities=19% Similarity=0.200 Sum_probs=172.4
Q ss_pred hhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecc-eeccCccCCccCCCce
Q psy1870 7 NALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSK-CYRAEISVVADEKGVY 85 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~-~fR~E~s~g~~~~GL~ 85 (264)
..+|+.+|+++.+ +++||++++. +++++|+||+|++++.+|+++++||++||++++|+|+ |||+|+++ .++||+
T Consensus 257 ~~~~~~sgh~~~f-~e~my~v~~~--~e~l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~~g--~l~GL~ 331 (613)
T PRK03991 257 LSHPAIREHADKF-GERQYRVKSD--KKDLMLRFAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQRG--ELVGLK 331 (613)
T ss_pred hhHHhhccccccc-chhceEecCC--CceEEEecCCCHHHHHHHhCCcCchhhCChhhheecchheeCCCCC--CCcCcc
Confidence 3678899999888 8899999765 5789999999999999999999999999999999999 99999863 689999
Q ss_pred eeEEEEEeeEEEEcCc-chHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchh------------------------
Q psy1870 86 RVHCFTKIEMFGVTLP-EDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQA------------------------ 140 (264)
Q Consensus 86 R~reF~~~E~~~f~~p-e~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a------------------------ 140 (264)
|+|||+|+|+|+||+| +|++++++.+++++.++|+.||++|+++..++++.-...
T Consensus 332 RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i~~~lGl~~~~~~~~t~df~~~~~~~l~~~l~~~g~~~~~~~~~g~~ 411 (613)
T PRK03991 332 RLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILETGEDLGRDYEVAIRFTEDFYEENKDWIVELVKREGKPVLLEILPERK 411 (613)
T ss_pred cccceEeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCHHHHhhhHHHHHHHHHHHcCCCEEecccCCcc
Confidence 9999999999999996 899999999999999999999999999887765532111
Q ss_pred -h--cccceeeecCcccccceeEecCCccchh-hcccceeecCC----CceeEEeccccc-HhHHHHHHHHhcccc----
Q psy1870 141 -Y--KKYDVEAWMPGRKHWGELSSCSDCTDYQ-ARRLNIRTEDG----KFAHTLNGTACA-IPRLLMALVETHQNQ---- 207 (264)
Q Consensus 141 -~--~~ydiE~w~p~~~~~~Ev~s~s~~~D~q-a~rl~i~y~~~----~~~ht~~gtg~~-v~Rll~alLE~~~~~---- 207 (264)
. .++|+.+.+ +.++-.++++. ..|++ ++||+++|.+. ..++.+.|+++| ++|+|++|||+++++
T Consensus 412 ~~yg~kie~~~~d-~~gr~~q~~T~--qld~~~~~~f~l~y~d~~g~~~~Pviih~~~~GsieR~i~aliE~~~~~~~~g 488 (613)
T PRK03991 412 HYWVLKVEFAFID-SLGRPIENPTV--QIDVENAERFGIKYVDENGEEKYPIILHCSPTGSIERVIYALLEKAAKEEEEG 488 (613)
T ss_pred ccCcCcEEEEEeC-CCCCEEEEeee--ecCcccchhCCCEEECCCCCEeeCEEEEECCEeHHHHHHHHHHHHhCCccccC
Confidence 0 112222221 11222233222 34554 88999999987 267778888887 999999999999987
Q ss_pred CCceeccCCccccccceeeecCC
Q psy1870 208 DGTVNIPECLQPFMFNKRIIGDT 230 (264)
Q Consensus 208 ~G~i~lP~~LaP~~~~~~~i~~~ 230 (264)
.| ++||.||||++ +.||+..
T Consensus 489 ~g-l~~P~~lAP~q--V~IIpi~ 508 (613)
T PRK03991 489 KV-PMLPTWLSPTQ--VRVIPVS 508 (613)
T ss_pred ce-eEcCccccCce--EEEEEeC
Confidence 55 99999999999 5666543
No 20
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=4.8e-38 Score=287.89 Aligned_cols=196 Identities=18% Similarity=0.258 Sum_probs=170.0
Q ss_pred hhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCcee
Q psy1870 7 NALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYR 86 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R 86 (264)
..+|.+||+++.+ .++||+++++ +++++|+||+|.+++.++++++.||++||+|++++++|||+|.++ +++||+|
T Consensus 60 ~~l~~~sg~~~~~-~~~my~~~~~--~~~l~LRP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~--~~~Gl~R 134 (298)
T cd00771 60 KELWETSGHWDHY-RENMFPFEEE--DEEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSG--ALHGLTR 134 (298)
T ss_pred HHHHhhCCCcccc-ccCceEeccC--CceEEEcccCCHHHHHHHHhhccchhhCCeEEEEecCcccCCCCC--CCCCccc
Confidence 4578899999988 8899999654 578999999999999999999999999999999999999999863 6899999
Q ss_pred eEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEecCC--
Q psy1870 87 VHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSD-- 164 (264)
Q Consensus 87 ~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~-- 164 (264)
+|||+|+|+|+||+++++.+++.++++.+.++|+.|||++..+.+++++ +...+|+|+|+|+++.+.|+.+|++
T Consensus 135 ~reF~q~e~~i~~~~e~~~~e~~e~l~~~~~~l~~lgl~~~~i~l~~~~----~~~~~d~e~W~~a~~~l~e~l~~~~~~ 210 (298)
T cd00771 135 VRGFTQDDAHIFCTPDQIKEEIKGVLDLIKEVYSDFGFFDYKVELSTRP----EKFIGSDEVWEKAEAALREALEEIGLP 210 (298)
T ss_pred cccEEECCEEEEeCCcchHHHHHHHHHHHHHHHHHcCCCcEEEEEEcCh----hHhcCCHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999998888898886 4557899999998776665533222
Q ss_pred --------------------------------ccchh-hcccceeecCC------C-ceeE-EecccccHhHHHHHHHHh
Q psy1870 165 --------------------------------CTDYQ-ARRLNIRTEDG------K-FAHT-LNGTACAIPRLLMALVET 203 (264)
Q Consensus 165 --------------------------------~~D~q-a~rl~i~y~~~------~-~~ht-~~gtg~~v~Rll~alLE~ 203 (264)
+.|++ ++||+|+|.++ + ++|+ +-|| ++|+|++|||+
T Consensus 211 ~~~~~g~~afygpkid~~~~d~~gr~~q~~t~qld~~~~~~f~l~y~~~~~~~~~pv~ih~~~~Gs---~eR~i~~l~e~ 287 (298)
T cd00771 211 YEINEGEGAFYGPKIDFHVKDALGREWQCSTIQLDFNLPERFDLTYIGEDGEKKRPVMIHRAILGS---IERFIGILIEH 287 (298)
T ss_pred ceECCCCcccccceEEEEEEeCCCCeeecceeEeeccChhhcCCEEEccCCCccCCEEEEeCCCCc---HHHHHHHHHHh
Confidence 23554 78999999876 2 4886 5566 89999999999
Q ss_pred ccccCCceeccCCccc
Q psy1870 204 HQNQDGTVNIPECLQP 219 (264)
Q Consensus 204 ~~~~~G~i~lP~~LaP 219 (264)
|+ | .||.||||
T Consensus 288 ~~---g--~~P~wlaP 298 (298)
T cd00771 288 YA---G--KFPLWLAP 298 (298)
T ss_pred hC---C--CCCCccCc
Confidence 99 7 89999998
No 21
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.9e-38 Score=301.19 Aligned_cols=204 Identities=17% Similarity=0.229 Sum_probs=183.1
Q ss_pred hhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceee
Q psy1870 8 ALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRV 87 (264)
Q Consensus 8 ~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~ 87 (264)
.||+.+|++..+ +++||+|+|++ +++++|+||||+.|++|+++++.||+|||+++|||+++||+|+ |+++||+|.
T Consensus 78 eLwkEs~r~~~f-~~El~~v~drg-~~~l~L~PTsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~---rpr~gllR~ 152 (500)
T COG0442 78 ELWKESGRWEGF-GPELFRVKDRG-DRPLALRPTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEK---RPRFGLLRG 152 (500)
T ss_pred HHHHHhChhhhc-chhhEEEEccC-CceeeeCCCcHHHHHHHHHHHhhhhhhCCcceeeeeeEEeccc---cCCCCccch
Confidence 466689999888 88999999999 8999999999999999999999999999999999999999999 789999999
Q ss_pred EEEEEeeEEEEcCc-chHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEecCCcc
Q psy1870 88 HCFTKIEMFGVTLP-EDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCT 166 (264)
Q Consensus 88 reF~~~E~~~f~~p-e~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~ 166 (264)
|||+|+|+|+|+.+ ++++++|++++++|.+||..||+.|+.+...++.+|+..+++|+ +.+|. ++-.++.+|++.+
T Consensus 153 REF~mkdaySfh~~~e~a~~~y~~~~~~Y~~if~~i~l~~~~~~ad~g~~Gg~~S~eF~--~l~pd-~ge~qi~ts~~y~ 229 (500)
T COG0442 153 REFLMKDAYSFHADEEDAEETYEKMLDAYSRIFLRLPLIFGPVPADEGFIGGSYSHEFE--ALMPD-GGEDQIATSHHYG 229 (500)
T ss_pred heeeecccccccCCHHHHHHHHHHHHHHHHHHHHhCCceEEeecccCCCCCCccceEEE--EEccC-CCccEEEEecchH
Confidence 99999999999987 57999999999999999999999999999999999988777665 56775 4668899999888
Q ss_pred chhhccc-ceeecCC-----CceeEEecccccHhHHHHHHHHhccccCCceeccCCcccccc
Q psy1870 167 DYQARRL-NIRTEDG-----KFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMF 222 (264)
Q Consensus 167 D~qa~rl-~i~y~~~-----~~~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~ 222 (264)
+..++.+ +++|.+. .++||. +.|+ .+|.++++|-.++|++| +.+|+.+||.++
T Consensus 230 aN~e~a~~~~~~~~~~~~~~~~v~t~-s~~~-s~r~~~~~i~i~GDn~G-~v~Pp~vA~~qV 288 (500)
T COG0442 230 ANFEKAFIDIKFEDEEEGELEYVHTT-SYGI-STRIIGAAILIHGDNEG-LVLPPIVADIQV 288 (500)
T ss_pred HhHHHhccCCCccccccccceEeccc-ceEE-EeeeeeEEEEEecCCCC-ccCCchhccceE
Confidence 8888888 8888876 389986 5554 48999999999999888 999999999994
No 22
>PLN02837 threonine-tRNA ligase
Probab=100.00 E-value=1.2e-35 Score=295.20 Aligned_cols=210 Identities=18% Similarity=0.234 Sum_probs=168.0
Q ss_pred chhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCce
Q psy1870 6 CNALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVY 85 (264)
Q Consensus 6 ~~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~ 85 (264)
...||++||+++.+ +++||.+.+.. ++.++|+||+|..++.+|++++.||++||++++|+++|||+|+++ .++||+
T Consensus 276 ~~~l~~~sGh~~~~-~~~mf~~~~~~-~~~y~l~p~~~p~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~g--~~~GL~ 351 (614)
T PLN02837 276 KADLWKTSGHLDFY-KENMYDQMDIE-DELYQLRPMNCPYHILVYKRKLHSYRDLPIRVAELGTVYRYELSG--SLHGLF 351 (614)
T ss_pred CHHHHhhcCCcccc-hhhcccccCCC-CceEEECCCCcHHHHHHHhCccCChhHCCHhhEeecccccCCCCC--CCcCcc
Confidence 35799999999999 88999997765 678899999999999999999999999999999999999999973 589999
Q ss_pred eeEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCc---Cch-----------------------
Q psy1870 86 RVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANEL---GAQ----------------------- 139 (264)
Q Consensus 86 R~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl---~~~----------------------- 139 (264)
|+|||+|+|+|+||++++++++++.+++.++++|+.||+|++.+.++++.. |..
T Consensus 352 RvreF~~~e~h~f~~~~q~~~e~~~~l~~~~~~~~~lg~~~~~~~~~t~~~~~~g~~~~w~~~~~~l~~~l~~~~~~~~~ 431 (614)
T PLN02837 352 RVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEEILKQFGFSKYEINLSTRPEKSVGSDDIWEKATTALRDALDDKGWEYKV 431 (614)
T ss_pred cccceEECeEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCchhccCCHHHHHHHHHHHHHHHHHcCCCcee
Confidence 999999999999999999999999999999999999999999899988742 211
Q ss_pred -----hhcccceeeecCcc-cccceeEecCCccchh-hcccceeecCC------C-ceeEEecccccHhHHHHHHHHhcc
Q psy1870 140 -----AYKKYDVEAWMPGR-KHWGELSSCSDCTDYQ-ARRLNIRTEDG------K-FAHTLNGTACAIPRLLMALVETHQ 205 (264)
Q Consensus 140 -----a~~~ydiE~w~p~~-~~~~Ev~s~s~~~D~q-a~rl~i~y~~~------~-~~ht~~gtg~~v~Rll~alLE~~~ 205 (264)
+.+...+++-+.+. ++.-+++++ ..||+ ++||+++|.++ + ++|+. +.| +++|+|++|+|+|.
T Consensus 432 ~~g~~afygpkid~~~~d~~gr~~q~~ti--qldf~~~~~f~l~y~~~d~~~~~pv~ih~~-~~G-~~eRlia~Lie~~~ 507 (614)
T PLN02837 432 DEGGGAFYGPKIDLKIEDALGRKWQCSTI--QVDFNLPERFDITYVDSNSEKKRPIMIHRA-ILG-SLERFFGVLIEHYA 507 (614)
T ss_pred CCCcccccCcceeeEeeccCCceeeecce--eEeecchhhcCcEEECCCCCccCCEEEEcC-Ccc-CHHHHHHHHHHHcC
Confidence 11111122222221 121222232 25665 89999999987 2 67862 444 59999999999998
Q ss_pred ccCCceeccCCccccccceeeecCC
Q psy1870 206 NQDGTVNIPECLQPFMFNKRIIGDT 230 (264)
Q Consensus 206 ~~~G~i~lP~~LaP~~~~~~~i~~~ 230 (264)
| .||.||+|++ +.||+..
T Consensus 508 ---g--~~P~~laP~q--V~IIpi~ 525 (614)
T PLN02837 508 ---G--DFPLWLAPVQ--ARVLPVT 525 (614)
T ss_pred ---C--CCCCCCCCcc--EEEEEeC
Confidence 4 4999999999 5666654
No 23
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=100.00 E-value=1.9e-34 Score=243.90 Aligned_cols=142 Identities=27% Similarity=0.485 Sum_probs=133.4
Q ss_pred hhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccC-CCCCcceEEEecceeccCccCCccCCCce
Q psy1870 7 NALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLP-ESQLPKQIAAMSKCYRAEISVVADEKGVY 85 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~s-yr~LPl~l~q~s~~fR~E~s~g~~~~GL~ 85 (264)
..+|++||+++.+ .++||++.+.+ +++++|+||+|++++.++++...+ +++||++++|+|+|||+|. ++++||+
T Consensus 30 ~~~~~~sg~~~~~-~~~~~~~~~~~-~~~~~L~pt~~~~~~~~~~~~~~~~~~~LP~~~~~~g~~fR~E~---~~~~gl~ 104 (173)
T PF00587_consen 30 SEVWEKSGHWDNF-SDEMFKVKDRG-DEEYCLRPTSEPGIYSLFKNEIRSSYRDLPLKLYQIGTCFRNEA---RPTRGLF 104 (173)
T ss_dssp HHHHHHHSHHHHH-GGGSEEEEETT-TEEEEE-SSSHHHHHHHHHHHEEBHGGGSSEEEEEEEEEEBSSS---SSBSTTT
T ss_pred hHHhhhccccccc-cCCeeeeeecc-cccEEeccccccceeeeecceeeeccccCCeEEeeccccccccc---ccccccc
Confidence 5689999999988 77899999876 677999999999999999999999 9999999999999999998 4789999
Q ss_pred eeEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCC-ceEEEEccCCCcCchhhcccceeeecCcc
Q psy1870 86 RVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGI-HTRTLNMGANELGAQAYKKYDVEAWMPGR 153 (264)
Q Consensus 86 R~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lgl-pyr~v~~~~~dl~~~a~~~ydiE~w~p~~ 153 (264)
|+|||+|.|+|+||+++++.++++++++.+.+||+.||| ||+++..+++++++.+++++|+|+|+|++
T Consensus 105 R~reF~~~e~~~f~~~~~~~~~~~~~~~~~~~i~~~lgl~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~ 173 (173)
T PF00587_consen 105 RLREFTMDEMHIFCTPEQSEEEFEELLELYKEILEKLGLEPYRIVLSSSGELGAYAKYEFDIEAWFPAQ 173 (173)
T ss_dssp S-SEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSGCEEEEEEETCTSCTTSSEEEEEEEEETCC
T ss_pred eeeEeeeeceEEEeCCcccHHHHHHHHHHHHHHHHHcCCceEEEEEcCCCccCCCHHHcccHHHhCcCC
Confidence 999999999999999999999999999999999999999 99999999999999999999999999984
No 24
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.2e-33 Score=272.09 Aligned_cols=191 Identities=22% Similarity=0.344 Sum_probs=161.7
Q ss_pred CceEEeCCchHHHHHHHhccccCCC-CCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcchHHHHHHHHH
Q psy1870 34 NGWCLSGTAEMGIARYLMNQTLPES-QLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFL 112 (264)
Q Consensus 34 ~~~~L~pTaE~~i~~l~~~~~~syr-~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~s~~~~~~~~ 112 (264)
...||||+++|+++-.|+.+..||| +||++++|+|+|||+|+|+ ++||+|+|||+|.|+|+||+|+|+.+++..++
T Consensus 158 ~~~~lRpetaqg~~~~f~~~~~syr~dLPlr~aq~g~~~RnE~s~---~~gL~RvReF~q~e~hiF~~peq~~~e~~~~l 234 (456)
T PRK04173 158 SLGYLRPETAQGIFVNFKNVLRTARKKLPFGIAQIGKSFRNEITP---RNFIFRTREFEQMELEFFVKPGTDNEWFAYWI 234 (456)
T ss_pred cceeeccccchhHHHHHHHHHHhccccCCeeeeEEchhHhCccCC---CCCceeeceeeeeEEEEEECcChHHHHHHHHH
Confidence 3689999999999988999999999 9999999999999999973 69999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCc---eEEEEccCCCcCchhhcccceeeecCcccccceeEecCCccchhhc------ccceeecC--C-
Q psy1870 113 QFEESLFGELGIH---TRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQAR------RLNIRTED--G- 180 (264)
Q Consensus 113 ~~~~~i~~~Lglp---yr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~qa~------rl~i~y~~--~- 180 (264)
+.+.++|+.||++ +++...+++++..++...||+++++|....|.|++++..++||+.. ++++.|.+ .
T Consensus 235 ~~~~~~l~~lG~~~~~~~~s~~~~~e~~~ys~~~wd~e~~~~~g~~~~e~~g~~~~~dydL~~~~~~s~~dl~y~~~~~~ 314 (456)
T PRK04173 235 ELRKNWLLDLGIDPENLRFREHLPEELAHYSKATWDIEYKFPFGRFWGELEGIANRTDYDLSRHSKHSGEDLSYFDDETT 314 (456)
T ss_pred HHHHHHHHHcCCCccceEEEecCcchhhccHHHHHhHHHhCCCCCcEEEEeeeeccchhhcccchhhcCCCeEEEecCCC
Confidence 9999999999997 7776666677888888999999999875579999998899999744 69999983 2
Q ss_pred --C-ceeEEecccccHhHHHHHHHHhccccCC--------ceeccCCccccccceeeecCC
Q psy1870 181 --K-FAHTLNGTACAIPRLLMALVETHQNQDG--------TVNIPECLQPFMFNKRIIGDT 230 (264)
Q Consensus 181 --~-~~ht~~gtg~~v~Rll~alLE~~~~~~G--------~i~lP~~LaP~~~~~~~i~~~ 230 (264)
+ .+|.+ +.++|++|+++|||+.+.+++| .++||.||+|++ +.||+..
T Consensus 315 ~~~~~P~vi-~~siGieRl~~ail~~~~~~~~~~~~~~r~~l~~P~~lAP~q--V~Iipi~ 372 (456)
T PRK04173 315 GEKYIPYVI-EPSAGLDRLLLAFLEDAYTEEELGGGDKRTVLRLPPALAPVK--VAVLPLV 372 (456)
T ss_pred CceeeeEEE-EecccHHHHHHHHHHHHcccccccCCcceeEEECCCcCCCCE--EEEEEec
Confidence 2 56665 4457899988888766433211 279999999999 4555543
No 25
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=100.00 E-value=1.3e-32 Score=241.71 Aligned_cols=190 Identities=21% Similarity=0.277 Sum_probs=169.5
Q ss_pred hhhhhhcCCCCCCCCCceEEeecCCC---CCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCC
Q psy1870 7 NALECNSKINSKGERSQIYHLEPNYY---GNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKG 83 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~~~~~---~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~G 83 (264)
..+|+++|+.... .++||++.++++ ++.++|+||+|.+++.+++++..+|++||++++++++|||+|.++ .+|
T Consensus 32 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~~~~~~lP~r~~~~g~~fR~E~~~---~~g 107 (235)
T cd00670 32 TVLFFKGGHLDGY-RKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEILSYRALPLRLDQIGPCFRHEPSG---RRG 107 (235)
T ss_pred HHHHhhcCCcccc-hhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccCccchhcCeeeeeecccccCCCCC---CCC
Confidence 4578889966666 889999987631 367999999999999999999999999999999999999999853 489
Q ss_pred ceeeEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcC--------chhhcccceeeecCcccc
Q psy1870 84 VYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELG--------AQAYKKYDVEAWMPGRKH 155 (264)
Q Consensus 84 L~R~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~--------~~a~~~ydiE~w~p~~~~ 155 (264)
+.|+|||+|.|+++|+.++++.+.+.++++.+.++|+.||++++++..+.++++ +++..++|+|+|+|..++
T Consensus 108 l~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~lgl~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~g~ 187 (235)
T cd00670 108 LMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIARELGLPVRVVVADDPFFGRGGKRGLDAGRETVVEFELLLPLPGR 187 (235)
T ss_pred ChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEccChhhccCCccccccccCCceEEEEEecCCCC
Confidence 999999999999999999999999999999999999999999999999888888 788889999999998778
Q ss_pred cceeEecCCccchhhcccceeecCC---CceeEEecccccHhHHHHHHH
Q psy1870 156 WGELSSCSDCTDYQARRLNIRTEDG---KFAHTLNGTACAIPRLLMALV 201 (264)
Q Consensus 156 ~~Ev~s~s~~~D~qa~rl~i~y~~~---~~~ht~~gtg~~v~Rll~alL 201 (264)
+.+++++++|.|++++++.+++... .++|+++++ ++++|++++||
T Consensus 188 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~eR~l~all 235 (235)
T cd00670 188 AKETAVGSANVHLDHFGASFKIDEDGGGRAHTGCGGA-GGEERLVLALL 235 (235)
T ss_pred ceeeeEEEeecchhhhhccEEEccCCCceeeEEEeCc-cHHHHHHHHHC
Confidence 9999999999999998888876554 378887666 89999999986
No 26
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=99.97 E-value=8.9e-31 Score=256.45 Aligned_cols=206 Identities=16% Similarity=0.241 Sum_probs=164.6
Q ss_pred hhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCcee
Q psy1870 7 NALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYR 86 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R 86 (264)
..||..+|+++.. .++||.++.. +++++|+||+|.+++.+|+++..|||+||++++++|+|||+|.++ .++||+|
T Consensus 198 ~eL~k~SGh~~~y-~~~mf~~~~~--~e~~~LrPm~cp~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg--~l~GL~R 272 (545)
T PRK14799 198 TDIWKISGHYTLY-RDKLIVFNME--GDEYGVKPMNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKG--ELYGLLR 272 (545)
T ss_pred HHHHhhccccccc-hhhcceeecc--CceEEeccCCCHHHHHHHhccccChhhCCHhhEEecceecCCCCC--Ccccccc
Confidence 5789999999998 8899998543 688999999999999999999999999999999999999999974 6899999
Q ss_pred eEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCc---eEEEEccCC---CcCchh--------------------
Q psy1870 87 VHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIH---TRTLNMGAN---ELGAQA-------------------- 140 (264)
Q Consensus 87 ~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglp---yr~v~~~~~---dl~~~a-------------------- 140 (264)
+|||+|.|+|+||+++++.+++.++++.+.++|+.||++ |++.. ++. .+|...
T Consensus 273 vReF~Q~DaHif~~~~q~~~E~~~~l~~i~~vy~~fG~~~~~~~i~l-s~Rpe~~~G~~~~wdka~~~l~~~L~~~gl~~ 351 (545)
T PRK14799 273 VRGFVQDDGHIFLREDQLREEIKMLISKTVEVWHKFGFKDDDIKPYL-STRPDESIGSDELWEKATNALISALQESGLKF 351 (545)
T ss_pred ceeEEEcccEEEeCHHHHHHHHHHHHHHHHHHHHHhCCCcccEEEEE-EcChhhhcCCHHHHHHHHHHHHHHHHHcCCCe
Confidence 999999999999999999999999999999999999995 66643 221 111100
Q ss_pred ----------hcccceeeecCcccccceeEecCCccchh-hcccceeecCC------C-ceeEEecccccHhHHHHHHHH
Q psy1870 141 ----------YKKYDVEAWMPGRKHWGELSSCSDCTDYQ-ARRLNIRTEDG------K-FAHTLNGTACAIPRLLMALVE 202 (264)
Q Consensus 141 ----------~~~ydiE~w~p~~~~~~Ev~s~s~~~D~q-a~rl~i~y~~~------~-~~ht~~gtg~~v~Rll~alLE 202 (264)
..++|+++ .++.+++.++++++ .||+ ++||+++|.++ + ++|+ +...|++|++++|+|
T Consensus 352 ~~~~g~gafygpkiD~~v-~dalgr~~q~~Tiq--ldf~lp~rf~Ley~~~~~~~~~pv~ihr--~~~GgiERli~iL~e 426 (545)
T PRK14799 352 GIKEKEGAFYGPKIDFEI-RDSLGRWWQLSTIQ--VDFNLPERFKLEYIDKDGIKKRPVMVHR--AIYGSIDRFVAILLE 426 (545)
T ss_pred EEecceeccccCccceEe-hhhcCchhhhhhhh--hhcCcccccceEEEcCCCCCcccEEEEc--cCCCCHHHHHHHHHH
Confidence 01345444 44445556666655 7898 89999999875 2 6786 222369999999999
Q ss_pred hccccCCceeccCCccccccceeeecCC
Q psy1870 203 THQNQDGTVNIPECLQPFMFNKRIIGDT 230 (264)
Q Consensus 203 ~~~~~~G~i~lP~~LaP~~~~~~~i~~~ 230 (264)
+++ | .||.|++|.+ +.||+..
T Consensus 427 ~~~---G--~~P~wlaP~q--V~Iipi~ 447 (545)
T PRK14799 427 HFK---G--KLPTWLSSVQ--VRVLPIT 447 (545)
T ss_pred HcC---C--CCCCCCCCce--EEEEEcC
Confidence 875 6 6999999998 5556543
No 27
>PLN02908 threonyl-tRNA synthetase
Probab=99.97 E-value=9.7e-31 Score=263.15 Aligned_cols=207 Identities=16% Similarity=0.242 Sum_probs=163.5
Q ss_pred hhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCcee
Q psy1870 7 NALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYR 86 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R 86 (264)
..||++||+++.+ .++||+++.. +++++|+||+|.+++.+++++..||++||++++++|+|||+|+++ .++||+|
T Consensus 351 ~~l~~~sGh~~~~-~~~mf~~~~~--~~~~~Lrp~~~~~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~--~l~Gl~R 425 (686)
T PLN02908 351 MDLWETSGHAAHY-KENMFVFEIE--KQEFGLKPMNCPGHCLMFAHRVRSYRELPLRLADFGVLHRNELSG--ALTGLTR 425 (686)
T ss_pred HHHHhhcCCcccc-chhccEEecC--CeeEEEcCCCcHHHHHHHhccccChhhCCHhHEEeeccccCCCCc--CCcCccc
Confidence 5789999999999 8899999543 688999999999999999999999999999999999999999965 4899999
Q ss_pred eEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCC------cCchhhc---------ccceeeec-
Q psy1870 87 VHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANE------LGAQAYK---------KYDVEAWM- 150 (264)
Q Consensus 87 ~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~d------l~~~a~~---------~ydiE~w~- 150 (264)
+|||+|.|+|+||+|++++++++++++.+.++|+.||++|++. +++.. ++.+... +++.. |.
T Consensus 426 vReF~q~d~~if~~~~q~~~e~~~~l~~~~~v~~~lG~~~~~~-ls~r~~~~~g~~~~w~~ae~~l~~~ld~~~~~-~~~ 503 (686)
T PLN02908 426 VRRFQQDDAHIFCREDQIKDEVKGVLDFLDYVYEVFGFTYELK-LSTRPEKYLGDLETWDKAEAALTEALNAFGKP-WQL 503 (686)
T ss_pred cccEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHCCCcEEEE-EeCCccccCCCHHHHHHHHHHHHHHHHHcCCC-cEE
Confidence 9999999999999999999999999999999999999999974 45432 1111100 11110 11
Q ss_pred -Cccc-------------ccceeEecCC-ccchh-hcccceeecCC-------C-ceeE-EecccccHhHHHHHHHHhcc
Q psy1870 151 -PGRK-------------HWGELSSCSD-CTDYQ-ARRLNIRTEDG-------K-FAHT-LNGTACAIPRLLMALVETHQ 205 (264)
Q Consensus 151 -p~~~-------------~~~Ev~s~s~-~~D~q-a~rl~i~y~~~-------~-~~ht-~~gtg~~v~Rll~alLE~~~ 205 (264)
++.+ .+.+...|++ +.||+ +.||++.|.++ + ++|. +.| +++|++++|+|++.
T Consensus 504 ~~g~~afygpkid~~~~d~l~r~~~~~t~q~df~lp~~f~L~Y~~e~~~~~~~pv~ihrai~G---siERli~iL~e~~~ 580 (686)
T PLN02908 504 NEGDGAFYGPKIDITVSDALKRKFQCATVQLDFQLPIRFKLSYSAEDEAKIERPVMIHRAILG---SVERMFAILLEHYA 580 (686)
T ss_pred CCCceeecccceEEEEEeccCCEeeccceeecccCHhhcCCEEECCCCCcCCCCEEEEeCceE---hHHHHHHHHHHHcC
Confidence 2211 2344556664 67887 57899999765 2 5776 434 59999999999875
Q ss_pred ccCCceeccCCccccccceeeecCC
Q psy1870 206 NQDGTVNIPECLQPFMFNKRIIGDT 230 (264)
Q Consensus 206 ~~~G~i~lP~~LaP~~~~~~~i~~~ 230 (264)
| .||.|++|.+ +.||+..
T Consensus 581 ---g--~~p~wlsp~q--v~Vipv~ 598 (686)
T PLN02908 581 ---G--KWPFWLSPRQ--AIVVPIS 598 (686)
T ss_pred ---C--CCCCCCCCce--EEEEEEC
Confidence 5 7999999998 4555543
No 28
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.97 E-value=2e-30 Score=259.29 Aligned_cols=207 Identities=16% Similarity=0.269 Sum_probs=158.7
Q ss_pred hhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCcee
Q psy1870 7 NALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYR 86 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R 86 (264)
..+|.+||+++.. .++|| +.+.+ +++++|+||+|.+++.++++++.||++||++++|+|+|||+|.++ .++||+|
T Consensus 304 ~~l~~~sG~~~~~-~~emy-~~d~~-~~~~~LrP~~~~~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~--~~~Gl~R 378 (639)
T PRK12444 304 QELWERSGHWDHY-KDNMY-FSEVD-NKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSG--ALNGLLR 378 (639)
T ss_pred HHHHhhcCChhhh-hhhcC-eecCC-CcEEEEccCCCHHHHHHHhCcccChhhCCceeEEeccccCCCCCc--CCcCcce
Confidence 5789999998888 88999 44555 678999999999999999999999999999999999999999964 4899999
Q ss_pred eEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCC---cCchhhc---------------------
Q psy1870 87 VHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANE---LGAQAYK--------------------- 142 (264)
Q Consensus 87 ~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~d---l~~~a~~--------------------- 142 (264)
+|||+|.|+|+||++++++++++.+++++.++|+.||+||++ .++++. +|..+..
T Consensus 379 ~reF~q~d~~~f~~~~~~~~e~~~~~~~~~~i~~~lgl~~~~-~~~~r~~~~~G~~e~~~~~~~~l~~~l~~~~~~y~~~ 457 (639)
T PRK12444 379 VRTFCQDDAHLFVTPDQIEDEIKSVMAQIDYVYKTFGFEYEV-ELSTRPEDSMGDDELWEQAEASLENVLQSLNYKYRLN 457 (639)
T ss_pred eeeeEEccEEEECCHHHHHHHHHHHHHHHHHHHHHcCCcEEE-EEECCccccCCCHHHHHHHHHHHHHHHHHcCCCceec
Confidence 999999999999999999999999999999999999999985 444432 4431111
Q ss_pred -------ccceeeecCcccccceeEecCC-ccchh-hcccceeecCC------C-ceeEEecccccHhHHHHHHHHhccc
Q psy1870 143 -------KYDVEAWMPGRKHWGELSSCSD-CTDYQ-ARRLNIRTEDG------K-FAHTLNGTACAIPRLLMALVETHQN 206 (264)
Q Consensus 143 -------~ydiE~w~p~~~~~~Ev~s~s~-~~D~q-a~rl~i~y~~~------~-~~ht~~gtg~~v~Rll~alLE~~~~ 206 (264)
.-.+|+-+.+..+ ....|+. +-|++ ++||+++|.+. + ++|. .+.| +++|+|++|+|++.
T Consensus 458 ~~~ga~Y~~~~e~~~~~~~~--~~~~~~t~~~d~~~~~~f~l~~~~~~g~~~~P~i~~~-~~~g-~ieRli~~L~e~~~- 532 (639)
T PRK12444 458 EGDGAFYGPKIDFHIKDALN--RSHQCGTIQLDFQMPEKFDLNYIDEKNEKRRPVVIHR-AVLG-SLDRFLAILIEHFG- 532 (639)
T ss_pred cCCcccccceEEEEeecCCC--ChhcccceeeecccccccceEEECCCCCccccEEEEE-CCCC-CHHHHHHHHHHhcC-
Confidence 0111222221111 1112332 34664 78999999876 2 4454 2343 79999999999874
Q ss_pred cCCceeccCCccccccceeeecCC
Q psy1870 207 QDGTVNIPECLQPFMFNKRIIGDT 230 (264)
Q Consensus 207 ~~G~i~lP~~LaP~~~~~~~i~~~ 230 (264)
| .||.|++|.+ +.+|+..
T Consensus 533 --~--~~p~~~ap~q--V~Ii~~~ 550 (639)
T PRK12444 533 --G--AFPAWLAPVQ--VKVIPVS 550 (639)
T ss_pred --C--CCCCccCCce--EEEEEcc
Confidence 4 8999999999 5556544
No 29
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.96 E-value=1.7e-29 Score=249.13 Aligned_cols=210 Identities=16% Similarity=0.183 Sum_probs=162.5
Q ss_pred hhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCcee
Q psy1870 7 NALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYR 86 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R 86 (264)
..||.+||+++.. .++||++.|++ ++.++|+||+|.+++.++.+..+||++||++++++|+|||+|+++ .++||+|
T Consensus 230 ~~l~~~sg~~~~~-~~emy~~~d~~-~~~~~LrP~~~~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~g--~~~Gl~R 305 (563)
T TIGR00418 230 LELWEISGHWDNY-KERMFPFTELD-NREFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQSG--ELHGLMR 305 (563)
T ss_pred HHHHHhcCCcccc-hhhcceeccCC-CceEEEecCCCHHHHHHHhCcCCChHHCCceeeEeccccCCCCCc--CCcCccc
Confidence 5689999999887 88999999887 789999999999999999999999999999999999999999853 4899999
Q ss_pred eEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcC----chh---hc-----------------
Q psy1870 87 VHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELG----AQA---YK----------------- 142 (264)
Q Consensus 87 ~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~----~~a---~~----------------- 142 (264)
+|||+|.|+|+||.++++++++.++++.+.++|+.|||+++.+.+++++.. ... .+
T Consensus 306 ~reF~q~~~~~~~~~~~~~~e~~~~i~~~~~~~~~lgl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~ 385 (563)
T TIGR00418 306 VRGFTQDDAHIFCTEDQIKEEFKNQFRLIQKVYSDFGFSFDKYELSTRDPEDFIGEDELWEKAEAALEEALKELGVPYEI 385 (563)
T ss_pred ccceEEeeeEEEcCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCChhhhcCCHHHHHHHHHHHHHHHHhCCCceEE
Confidence 999999999999999899999999999999999999999887888876431 100 00
Q ss_pred ----------ccceeeecCcccccceeEecCCccchh-hcccceeecCC----CceeEE-ecccccHhHHHHHHHHhccc
Q psy1870 143 ----------KYDVEAWMPGRKHWGELSSCSDCTDYQ-ARRLNIRTEDG----KFAHTL-NGTACAIPRLLMALVETHQN 206 (264)
Q Consensus 143 ----------~ydiE~w~p~~~~~~Ev~s~s~~~D~q-a~rl~i~y~~~----~~~ht~-~gtg~~v~Rll~alLE~~~~ 206 (264)
++++|+ ....++..+++++. .|+. ..|+++.|.+. ..++.+ -|.++|++|++++|+|++.
T Consensus 386 ~~~~g~~y~~~~~f~~-~~~lg~~~~~~t~q--~~~~~g~ryd~~~~~~~g~~~~p~ii~~Gfa~gieRli~~l~e~~~- 461 (563)
T TIGR00418 386 DPGRGAFYGPKIDFAF-KDALGREWQCATVQ--LDFELPERFDLTYVDEDNEEKRPVMIHRAILGSIERFIAILLEKYA- 461 (563)
T ss_pred cCCCcceecceEEEEe-ecCCCCceeeceee--eccCCHhhcCCEEECCCCCEEeeEEEEeeccCcHHHHHHHHHHhcc-
Confidence 012221 11112222222222 4454 78999998766 233321 2555689999999999875
Q ss_pred cCCceeccCCccccccceeeecCC
Q psy1870 207 QDGTVNIPECLQPFMFNKRIIGDT 230 (264)
Q Consensus 207 ~~G~i~lP~~LaP~~~~~~~i~~~ 230 (264)
+ .||.|++|.+ +.||+..
T Consensus 462 --~--~~p~~~~p~~--v~vi~~~ 479 (563)
T TIGR00418 462 --G--NFPLWLAPVQ--VVVIPVN 479 (563)
T ss_pred --C--CCCCcCCCce--EEEEEcc
Confidence 3 6899999999 5666544
No 30
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=99.96 E-value=5.9e-29 Score=237.77 Aligned_cols=177 Identities=18% Similarity=0.269 Sum_probs=148.7
Q ss_pred CceEEeecCCC---CCceEEeCCchHHHH-HHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEE
Q psy1870 22 SQIYHLEPNYY---GNGWCLSGTAEMGIA-RYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG 97 (264)
Q Consensus 22 ~~ly~i~~~~~---~~~~~L~pTaE~~i~-~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~ 97 (264)
|.||+...+.. +...||||.+.|+|+ +|.+-...+.+.||+.++|||++||||++ ++.||+|+|||+|.|+..
T Consensus 122 NLMF~T~iGp~~~~~~~~yLRPETAQGiFvnFk~ll~~~~~klPFgiaQIGk~FRNEIs---Pr~~l~R~REF~q~EiE~ 198 (539)
T PRK14894 122 NMMFRTQIGPVADSDSFAYLRPETAQGIFVNFANVLATSARKLPFGIAQVGKAFRNEIN---PRNFLFRVREFEQMEIEY 198 (539)
T ss_pred cccceeccccCCCcCcceeeCcccchHHHHHHHHHHHhcCCCCCeeEEeeeccccCccC---CCCceeecccchhheEEE
Confidence 46777665432 245899999999999 55554567889999999999999999996 579999999999999999
Q ss_pred EcCcchHHHHHHHHHHHHHHHHHHhCCc---eEEEEccCCCcCchhhcccceeeecCcccccceeEecCCccchhhcc--
Q psy1870 98 VTLPEDSEKQLEQFLQFEESLFGELGIH---TRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARR-- 172 (264)
Q Consensus 98 f~~pe~s~~~~~~~~~~~~~i~~~Lglp---yr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~qa~r-- 172 (264)
|+.|+++.+++.++++....|+.+|||+ +|+.+....+|.+++..++|+|+.+|+- +|.|+..|++.+||+.++
T Consensus 199 Fv~P~~~~~~~~y~~~~~~~fl~~iGi~~~~lrfr~h~~~ElAHYa~~~~D~e~~~p~~-Gw~E~~Gia~RtdyDL~~H~ 277 (539)
T PRK14894 199 FVMPGTDEEWHQRWLEARLAWWEQIGIPRSRITIYDVPPDELAHYSKRTFDLMYDYPNI-GVQEIEGIANRTDYDLGSHS 277 (539)
T ss_pred EeCCCchHHHHHHHHHHHHHHHHHhCCCHHHeeeeecCcHHhhhhhhccEEEEEECCCC-CeEEEEEeecccccCHHHHh
Confidence 9999999999999999999999999996 9999999999999999999999998863 799999999999996321
Q ss_pred -------------------cceeecCC----C-ceeEEecccccHhHHHHHHHHh
Q psy1870 173 -------------------LNIRTEDG----K-FAHTLNGTACAIPRLLMALVET 203 (264)
Q Consensus 173 -------------------l~i~y~~~----~-~~ht~~gtg~~v~Rll~alLE~ 203 (264)
.++.|.++ + .+|.+ -..+|++|++.|+|++
T Consensus 278 ~~s~~~~l~~~~~~~~~s~~~l~~~~~~~~~~~iP~Vi-EpS~G~dR~~~a~l~~ 331 (539)
T PRK14894 278 KDQEQLNLTARVNPNEDSTARLTYFDQASGRHVVPYVI-EPSAGVGRCMLAVMCE 331 (539)
T ss_pred hhcccCCceeeeccccCCCceEEEEeccCCcccCCcee-ecCcchhHHHHHHHHH
Confidence 22344333 2 56766 4458999999999987
No 31
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=4.2e-29 Score=246.94 Aligned_cols=206 Identities=21% Similarity=0.257 Sum_probs=162.3
Q ss_pred hhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCcee
Q psy1870 7 NALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYR 86 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R 86 (264)
..+|++||+++.. .++||++.|.+ ++.++|+||+|.+++.++++...||++||+|++++|+|||+|.++ +++||+|
T Consensus 236 ~~l~~~sg~~~~~-~~~my~~~d~~-~~~~~LRP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~--~~~Gl~R 311 (575)
T PRK12305 236 SDLWKTSGHLDNY-KENMFPPMEID-EEEYYLKPMNCPGHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSG--VLHGLTR 311 (575)
T ss_pred HHHHhhcCCcccc-hhhcccccccC-CceEEEecCCCHHHHHHHhcccCChhhCCHhhEEecccccCCCCC--CCcCccc
Confidence 4688999999888 78999998776 789999999999999999999999999999999999999999863 6899999
Q ss_pred eEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhccc--ceeeecCccccc--------
Q psy1870 87 VHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKY--DVEAWMPGRKHW-------- 156 (264)
Q Consensus 87 ~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~y--diE~w~p~~~~~-------- 156 (264)
+|||+|.|+|+||+++++.+++.++++.+.++|+.|||+...+.++++++ .+| +.|+|.+..+.+
T Consensus 312 ~reF~q~~~~if~~~~~~~~e~~e~i~l~~~~~~~lgl~~~~i~l~~r~~-----~~~~g~~~~~~~~~~~l~~~l~~~g 386 (575)
T PRK12305 312 VRGFTQDDAHIFCTPDQIEDEILKVLDFVLELLKDFGFKDYYLELSTREP-----EKYVGDDEVWEKATEALREALEELG 386 (575)
T ss_pred ccCeEEcceEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCh-----hhccCCHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999955567788763 111 333342211100
Q ss_pred -------------------------ceeEecCC-ccchh-hcccceeecCC------C-ceeEEecccccHhHHHHHHHH
Q psy1870 157 -------------------------GELSSCSD-CTDYQ-ARRLNIRTEDG------K-FAHTLNGTACAIPRLLMALVE 202 (264)
Q Consensus 157 -------------------------~Ev~s~s~-~~D~q-a~rl~i~y~~~------~-~~ht~~gtg~~v~Rll~alLE 202 (264)
+....|+. +.||+ +.||+++|.+. + ++|.- +.| +++|++++|+|
T Consensus 387 ~~~~~~~~~~~~y~~~~~~~~~d~~g~~~~~~t~~~~~~~~~~fdl~y~~~~~~~~~p~~ih~~-~~G-~~eRl~~~l~e 464 (575)
T PRK12305 387 LEYVEDPGGAAFYGPKIDVQIKDALGREWQMSTIQLDFNLPERFDLEYTAEDGKRQRPVMIHRA-LFG-SIERFIGILTE 464 (575)
T ss_pred CCcEecCCCcccccccEEEEeeccCCCceeccceeeecccHhhCCCEEECCCCCccCceEEEcc-ccc-cHHHHHHHHHH
Confidence 11112221 34554 57899999776 2 55652 223 69999999999
Q ss_pred hccccCCceeccCCccccccceeeecCC
Q psy1870 203 THQNQDGTVNIPECLQPFMFNKRIIGDT 230 (264)
Q Consensus 203 ~~~~~~G~i~lP~~LaP~~~~~~~i~~~ 230 (264)
++. | .||.|++|++ +.|++..
T Consensus 465 ~~~---~--~~p~~~~p~~--v~Ii~~~ 485 (575)
T PRK12305 465 HYA---G--AFPFWLAPVQ--VVIIPVA 485 (575)
T ss_pred HhC---C--CCCCCCCCcc--EEEEEeC
Confidence 976 4 7999999998 5666654
No 32
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.3e-28 Score=241.36 Aligned_cols=211 Identities=20% Similarity=0.285 Sum_probs=170.5
Q ss_pred chhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCce
Q psy1870 6 CNALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVY 85 (264)
Q Consensus 6 ~~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~ 85 (264)
+..||+.+|++.+. ++.||.+... +++++|+|++|.+.+.++++...|||+||++++++|.|||+|.|+ ...||+
T Consensus 249 ~~~l~~~SGH~~~y-~e~mf~~~~~--~~~~~lKpmNCpgh~~ifk~~~~SYR~LP~r~~E~g~v~R~E~SG--al~GL~ 323 (589)
T COG0441 249 DLELWELSGHWDNY-KEDMFLTESD--DREYALKPMNCPGHILIFKSGLRSYRELPLRLAEFGYVYRYEKSG--ALHGLM 323 (589)
T ss_pred ecccchhccchhhc-cccceeeccC--ChhheeeeccCHhHHHHHhcCCcceeccchhhhhcceeecccCcc--hhhccc
Confidence 45799999999988 8999998755 478999999999999999999999999999999999999999985 799999
Q ss_pred eeEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCc-eEEEEccCCC--cCc------------hhhcccceeeec
Q psy1870 86 RVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIH-TRTLNMGANE--LGA------------QAYKKYDVEAWM 150 (264)
Q Consensus 86 R~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglp-yr~v~~~~~d--l~~------------~a~~~ydiE~w~ 150 (264)
|||.|+|.|+|+||+++|..+++...++....+++.+|+. |++ .+++.+ +|. .+.....++.+.
T Consensus 324 RvR~ftqdDaHifc~~dQi~~E~~~~~~~i~~v~~~fg~~~y~~-~ls~r~k~ig~d~~W~~a~~~l~~al~~~~~~~~~ 402 (589)
T COG0441 324 RVRGFTQDDAHIFCTPDQIKDEFKGILELILEVYKDFGFTDYEV-KLSTRPKFIGSDEMWDKAEAALREALKEIGVEYVE 402 (589)
T ss_pred cccceeecccceeccHHHHHHHHHHHHHHHHHHHHhcCCceEEE-EEecCCcccCChhhhHHHHHHHHHHHHhhCceeee
Confidence 9999999999999999999999999999999999999997 665 566664 221 011222333332
Q ss_pred C-ccccc-------------ceeEecCC-ccchh-hcccceeecCC------C-ceeE-EecccccHhHHHHHHHHhccc
Q psy1870 151 P-GRKHW-------------GELSSCSD-CTDYQ-ARRLNIRTEDG------K-FAHT-LNGTACAIPRLLMALVETHQN 206 (264)
Q Consensus 151 p-~~~~~-------------~Ev~s~s~-~~D~q-a~rl~i~y~~~------~-~~ht-~~gtg~~v~Rll~alLE~~~~ 206 (264)
. +++.| +....|++ +.||+ ++||++.|.+. + ++|. +.|| ++|++++|||++.
T Consensus 403 ~~G~~aFyGPKid~~v~Dalgr~~q~~TIQlDf~lpeRF~l~Yv~~d~~~~~PvmiHrai~GS---iERfi~iLiE~~~- 478 (589)
T COG0441 403 EPGEGAFYGPKIDFQVKDALGREWQLGTIQLDFNLPERFDLEYVDEDGEKKRPVIIHRAILGS---IERFIGILLEHYA- 478 (589)
T ss_pred cCCceEEECcccceEEEeccCcceecceEEEecCChhhceEEEEcCCCCccCCEEEEeccchh---HHHHHHHHHHhcc-
Confidence 2 22221 22234554 56886 78999999985 3 8897 5666 9999999999887
Q ss_pred cCCceeccCCccccccceeeecCCCC
Q psy1870 207 QDGTVNIPECLQPFMFNKRIIGDTRG 232 (264)
Q Consensus 207 ~~G~i~lP~~LaP~~~~~~~i~~~~~ 232 (264)
| .+|.||+|.| +.||+-.+.
T Consensus 479 --G--~~P~WLaPvQ--v~VipV~~~ 498 (589)
T COG0441 479 --G--ALPTWLAPVQ--VRVIPVADE 498 (589)
T ss_pred --C--CCcccCCccE--EEEEEeChH
Confidence 7 8999999999 788887643
No 33
>PLN02734 glycyl-tRNA synthetase
Probab=99.95 E-value=1.1e-28 Score=244.08 Aligned_cols=144 Identities=24% Similarity=0.255 Sum_probs=127.6
Q ss_pred CceEEeecCCC-CCceEEeCCchHHHH-HHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEc
Q psy1870 22 SQIYHLEPNYY-GNGWCLSGTAEMGIA-RYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVT 99 (264)
Q Consensus 22 ~~ly~i~~~~~-~~~~~L~pTaE~~i~-~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~ 99 (264)
|.||+...+.. +...||||.+.|+|+ +|-+-.......||+.++|||+.||||+| |+.||+|+|||+|.|+..|+
T Consensus 234 NLMF~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~~~klPF~~AQIGk~FRNEIs---PR~gl~R~REF~qaEiE~Fv 310 (684)
T PLN02734 234 NLMFQTSIGPSGLSVGYMRPETAQGIFVNFRDLYYYNGGKLPFAAAQIGQAFRNEIS---PRQGLLRVREFTLAEIEHFV 310 (684)
T ss_pred ccceeecccCcCCccceecccccchheeeHHHHHHhcCCCCCeeeeeccHhhhcccC---cccceeeechhhhhhhheec
Confidence 58888876653 457899999999999 66655667888999999999999999996 58999999999999999999
Q ss_pred CcchH------------------------------------------HHHHHHHHHHHHHHHHHhCCc---eEEEEccCC
Q psy1870 100 LPEDS------------------------------------------EKQLEQFLQFEESLFGELGIH---TRTLNMGAN 134 (264)
Q Consensus 100 ~pe~s------------------------------------------~~~~~~~~~~~~~i~~~Lglp---yr~v~~~~~ 134 (264)
.|++. ++++.+++.....|+.+|||+ .|+.+....
T Consensus 311 ~P~~k~h~~f~~v~~~~l~l~~~~~q~~~~~~~~~t~~eAv~~gii~ne~l~Y~~~r~~~fl~~iGi~~~~lRfRqh~~~ 390 (684)
T PLN02734 311 DPEDKSHPKFSEVADLEFLLFPREEQLGGQKAKPMRLGEAVSKGIVNNETLGYFIGRTYLFLTKLGIDKERLRFRQHLAN 390 (684)
T ss_pred CcccccccchhhhhhhhhhcccHhhhhccCCcccccHHHHHHcCccchHHHHHHHHHHHHHHHHcCCCHHHeeecccCcH
Confidence 99732 458999999999999999996 999999999
Q ss_pred CcCchhhcccceeeecCcccccceeEecCCccchhh
Q psy1870 135 ELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQA 170 (264)
Q Consensus 135 dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~qa 170 (264)
+|.++|..+||+|+.+|. +|.|+..|++++||+.
T Consensus 391 EmAHYA~dcwD~E~~~~~--GWiE~vG~AdRs~yDL 424 (684)
T PLN02734 391 EMAHYAADCWDAEIECSY--GWIECVGIADRSAYDL 424 (684)
T ss_pred HHhhhhhccEeEEEecCC--CcEEEEEeccccccch
Confidence 999999999999999865 7999999999999864
No 34
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=99.94 E-value=3.7e-27 Score=229.86 Aligned_cols=201 Identities=24% Similarity=0.346 Sum_probs=160.3
Q ss_pred CceEEeecCCC-CCceEEeCCchHHHH-HHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEc
Q psy1870 22 SQIYHLEPNYY-GNGWCLSGTAEMGIA-RYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVT 99 (264)
Q Consensus 22 ~~ly~i~~~~~-~~~~~L~pTaE~~i~-~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~ 99 (264)
+.||+...+.. +...||||.+.|+|+ +|-+-...+..+||+.++|||++||||+| |++||+|+|||+|.|+..||
T Consensus 142 NLMF~t~iGp~~~~~~yLRPETAQGiFvnFk~l~~~~~~klPfgiaQiGk~fRNEIs---Pr~~l~R~REF~q~EiE~F~ 218 (551)
T TIGR00389 142 NLMFQTEIGVVGKRKGYLRPETAQGIFINFKRLLQFFRRKLPFGVAQIGKSFRNEIS---PRNGLFRVREFEQAEIEFFV 218 (551)
T ss_pred ccceeeccCCCCCcccccccccchhhHHhHHHHHHhcCCCCCeeehhhhHhhhcccC---cccceEEeehhhhchhheec
Confidence 68998876543 457999999999999 55555567888999999999999999996 58999999999999999999
Q ss_pred Ccch-H----------------------------------HHHHHHHHHHHHHHHHHhCCc---eEEEEccCCCcCchhh
Q psy1870 100 LPED-S----------------------------------EKQLEQFLQFEESLFGELGIH---TRTLNMGANELGAQAY 141 (264)
Q Consensus 100 ~pe~-s----------------------------------~~~~~~~~~~~~~i~~~Lglp---yr~v~~~~~dl~~~a~ 141 (264)
.|++ . ++++.+++.....|+.++||+ .|+.+..+.+|.++|.
T Consensus 219 ~p~~~~~~~f~~~~~~~~~l~~~~~~~~~~~eav~~g~i~n~~~~y~~~~~~~fl~~~Gi~~~~lrfrqh~~~e~AHYa~ 298 (551)
T TIGR00389 219 HPLDKSHPKFEEVKQDILPLLPRQMQESGIGEAVESGMIENETLGYFIARVKQFLLEIGINPDKLRFRQHDKNEMAHYAK 298 (551)
T ss_pred CcccccchhhHHHHHHHHhhccchhhhccHHHHHHhcccchHHHHHHHHHHHHHHHHhCCCHHHeeecccCcHHHhhhcc
Confidence 9951 1 236677777778999999996 8998999999999999
Q ss_pred cccceeeecCcccccceeEecCCccchhhcc------cceeecC------------------------------------
Q psy1870 142 KKYDVEAWMPGRKHWGELSSCSDCTDYQARR------LNIRTED------------------------------------ 179 (264)
Q Consensus 142 ~~ydiE~w~p~~~~~~Ev~s~s~~~D~qa~r------l~i~y~~------------------------------------ 179 (264)
.++|+|+.+|. +|.|+..|++.+||+.++ -++.|.+
T Consensus 299 ~~~D~e~~~~~--Gw~E~~G~a~R~~yDL~~H~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 376 (551)
T TIGR00389 299 DCWDFEFLTPY--GWIECVGIADRGDYDLTQHSKFSGKSLSVFDKLDEPREVTKWEIEPNKKKFGPKFRKDAKKIESNLS 376 (551)
T ss_pred ccEeEEEecCC--CcEEEEEeccccccChHHHHHhhCCCeEEEeecCCCceeEEEEEecchhhhhhhhHhHHHHHHHhhc
Confidence 99999999976 799999999999997432 1222210
Q ss_pred ----------------------------------CC-ceeEEecccccHhHHHHHHHHhcccc-------CCceeccCCc
Q psy1870 180 ----------------------------------GK-FAHTLNGTACAIPRLLMALVETHQNQ-------DGTVNIPECL 217 (264)
Q Consensus 180 ----------------------------------~~-~~ht~~gtg~~v~Rll~alLE~~~~~-------~G~i~lP~~L 217 (264)
.+ .+|.+. .++|++|+++||+|+..++ .+.++||++|
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~VIe-pS~GIdRIi~ALle~~~~e~~~~~~~r~vL~lp~~l 455 (551)
T TIGR00389 377 EDDLEEREEELDKNEVELDKDLVEIEMVTEVVHGEKYIPHVIE-PSFGIDRIIYALLEHSYQEEVLDGEEREVLRLPPHL 455 (551)
T ss_pred HHHHHHHHhhhhccceecchhhhhheeeeeccCCcEecceEEE-cccCHHHHHHHHHHhhCccccccccccceeccCCcc
Confidence 12 456654 4489999999999985552 1237999999
Q ss_pred cccccceeeecCC
Q psy1870 218 QPFMFNKRIIGDT 230 (264)
Q Consensus 218 aP~~~~~~~i~~~ 230 (264)
||++ +.|++..
T Consensus 456 AP~k--V~VIpl~ 466 (551)
T TIGR00389 456 APIK--VAVLPLV 466 (551)
T ss_pred CCce--EEEEEec
Confidence 9999 4555443
No 35
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.7e-27 Score=226.97 Aligned_cols=201 Identities=24% Similarity=0.355 Sum_probs=159.7
Q ss_pred CceEEeecCCC-CCceEEeCCchHHHH-HHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEc
Q psy1870 22 SQIYHLEPNYY-GNGWCLSGTAEMGIA-RYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVT 99 (264)
Q Consensus 22 ~~ly~i~~~~~-~~~~~L~pTaE~~i~-~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~ 99 (264)
|.||+...+.. ++..||||.+.|+|+ +|-+-.....+.||+.++|||+.||||+| +++||+|+|||+|.|+..|+
T Consensus 146 NLMF~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~r~klPFgiaQIGKsfRNEIS---Pr~gl~R~REF~QaEiE~Fv 222 (558)
T COG0423 146 NLMFKTTIGPVEDSLGYLRPETAQGIFVNFKNLLEFARNKLPFGIAQIGKSFRNEIS---PRNGLFRTREFEQAEIEFFV 222 (558)
T ss_pred eeEEEeeecCCCCcceeecccccchhhhhhHHHHHHhccCCCeEEEeechhhccccC---cccceeehhhhhhhheeeEE
Confidence 58888555432 678999999999999 55555667889999999999999999996 57999999999999999999
Q ss_pred Ccch-------------------H--HH---------------HHHHHHHHHHHHHHHhCCc---eEEEEccCCCcCchh
Q psy1870 100 LPED-------------------S--EK---------------QLEQFLQFEESLFGELGIH---TRTLNMGANELGAQA 140 (264)
Q Consensus 100 ~pe~-------------------s--~~---------------~~~~~~~~~~~i~~~Lglp---yr~v~~~~~dl~~~a 140 (264)
.|++ . ++ ++..++.....++..|||+ .|..+..+.+|.+++
T Consensus 223 ~P~~k~~p~f~~v~~~~l~l~~~~~q~~~~~~EAv~~g~~~n~~~~y~~~~~~~fl~~lGI~~e~lRfrqh~~~E~AHYa 302 (558)
T COG0423 223 DPEEKEHPKFNEVKDEKLPLLPREAQEEGTEEEAVEEGIVENETLAYFIARTKFFLEDLGIDPEKLRFRQHLPEELAHYS 302 (558)
T ss_pred CCCcccCcchhhhhhhhcccccHHHhhhhhhhhhhhcceeechhHHHHHHHHHHHHHHcCCCHHHhhhhhcChHHHhhhh
Confidence 9976 3 22 2446667777888899997 888899999999999
Q ss_pred hcccceeeecCcccccceeEecCCccchhhcc---------------------------cceeecCC-------------
Q psy1870 141 YKKYDVEAWMPGRKHWGELSSCSDCTDYQARR---------------------------LNIRTEDG------------- 180 (264)
Q Consensus 141 ~~~ydiE~w~p~~~~~~Ev~s~s~~~D~qa~r---------------------------l~i~y~~~------------- 180 (264)
+.++|+|+.+|. .+|.|+..|++.+||+.++ .+.+|.++
T Consensus 303 ~~twD~E~~~~~-~gWiE~~GiAdRtdYDL~~H~k~s~~~l~v~~~~~ePk~v~~~~~~~~~~~~gp~~k~~a~~v~~~~ 381 (558)
T COG0423 303 KDTWDAEYKFPF-GGWIELVGIADRTDYDLSRHSKFSGEDLTVFREYDEPKEVERWHSKVDLKFLGPEFKKDAKKVAEAL 381 (558)
T ss_pred hcceeEEEecCC-CceEEEEEeecccccchhhhhhhccccceeeeccCCcceeeeeecccchhhcChhhhhhHHHHhhhh
Confidence 999999999986 4699999999999997432 11111111
Q ss_pred -------------------------------C-ceeEEecccccHhHHHHHHHHh-ccccCC-----ceeccCCcccccc
Q psy1870 181 -------------------------------K-FAHTLNGTACAIPRLLMALVET-HQNQDG-----TVNIPECLQPFMF 222 (264)
Q Consensus 181 -------------------------------~-~~ht~~gtg~~v~Rll~alLE~-~~~~~G-----~i~lP~~LaP~~~ 222 (264)
+ ++|.+. ...|++|+++++|++ |..+.+ -+++|++|||++
T Consensus 382 se~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~iP~VIE-PSfGidRi~y~~l~~ay~~ee~~e~R~vLrl~p~lAPik- 459 (558)
T COG0423 382 SELEELEKELNGYEVSKDLVIIEEVEKVTGEKYIPHVIE-PSFGIDRIFYALLEHAYTEEEVEEKRIVLRLPPDLAPIK- 459 (558)
T ss_pred hhhhhhhhccCccccccchhheeeeeeccCceecCceec-cCCCchHHHHHHHHHhhcccccccceeEEecCcccCceE-
Confidence 1 467664 448999999999999 554433 379999999999
Q ss_pred ceeeecC
Q psy1870 223 NKRIIGD 229 (264)
Q Consensus 223 ~~~~i~~ 229 (264)
++|.|-
T Consensus 460 -vaVlPL 465 (558)
T COG0423 460 -VAVLPL 465 (558)
T ss_pred -EEEEee
Confidence 555553
No 36
>KOG4163|consensus
Probab=99.93 E-value=1.2e-27 Score=222.32 Aligned_cols=220 Identities=18% Similarity=0.183 Sum_probs=194.7
Q ss_pred CCCcchhhhh---------hcCCCCCCCCCceEEeecCCC---CCceEEeCCchHHHHHHHhccccCCCCCcceEEEecc
Q psy1870 2 KLGHCNALEC---------NSKINSKGERSQIYHLEPNYY---GNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSK 69 (264)
Q Consensus 2 ~~~~~~~l~~---------~~G~~~~~~~~~ly~i~~~~~---~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~ 69 (264)
++||.|-+|+ ++..+..+|.+++-+++-.++ .+...+|||+|..++-+|+.|+.|||||||+|.|+..
T Consensus 114 ~lGv~ncYFPmfVs~~~LEkEk~Hve~FaPEvAwVTr~G~seLeepiaiRPTSETvmyp~yakWi~ShRDLPlkLNQW~n 193 (551)
T KOG4163|consen 114 KLGVKNCYFPMFVSKSVLEKEKDHVEGFAPEVAWVTRAGNSELEEPIAIRPTSETVMYPYYAKWIQSHRDLPLKLNQWCN 193 (551)
T ss_pred HhccccceeeeecCHHHHhhhhhhhccCCcceEEEEecCCcccccceeeccCccceecHHHHHHHHhhccCchhhhhhhh
Confidence 6889888876 899999999999999986542 5678999999999999999999999999999999999
Q ss_pred eeccCccCCccCCCceeeEEEEEeeEEE-EcCcchHHHHHHHHHHHHHHHHH-HhCCceEEEEccCCCcCchhhccccee
Q psy1870 70 CYRAEISVVADEKGVYRVHCFTKIEMFG-VTLPEDSEKQLEQFLQFEESLFG-ELGIHTRTLNMGANELGAQAYKKYDVE 147 (264)
Q Consensus 70 ~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~~pe~s~~~~~~~~~~~~~i~~-~Lglpyr~v~~~~~dl~~~a~~~ydiE 147 (264)
+-|+|. +....++|.|||.+.|.|+ |.++++|+++..++++.|.++|. .|-+|...-..+..+..++...++.+|
T Consensus 194 VvRWEf---k~p~PFlRtrEFLWQEGHTAfat~~eA~eEvlqiLdlYa~vy~ellAiPVvkGrKse~EkFaGgd~TttvE 270 (551)
T KOG4163|consen 194 VVRWEF---KHPQPFLRTREFLWQEGHTAFATPEEAEEEVLQILDLYARVYEELLAIPVVKGRKSEKEKFAGGDYTTTVE 270 (551)
T ss_pred heeeec---cCCCcchhhhHHHHhcCcchhCCHhHHHHHHHHHHHHHHHHHHhhhccccccCccchhhhccCCcceEEEe
Confidence 999999 3468899999999999997 88999999999999999999996 667787777777777888888999999
Q ss_pred eecCcccccceeEecCCccchhhcccceeecCC-----CceeEEecccccHhHHHHHHHHhccccCCceeccCCcccccc
Q psy1870 148 AWMPGRKHWGELSSCSDCTDYQARRLNIRTEDG-----KFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMF 222 (264)
Q Consensus 148 ~w~p~~~~~~Ev~s~s~~~D~qa~rl~i~y~~~-----~~~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~ 222 (264)
+.+|..++-.+-++.++.+..+++-|+|.|.++ .|+++ |+.|+. +|.|++++..|+|+.| |+||+.+||+|
T Consensus 271 a~i~~~GrgiQgaTSH~LGQNFSkmF~i~~ed~~~g~~~fv~Q-nSWg~s-TRtiGvmiM~HgDdkG-LvLPPrVA~vQ- 346 (551)
T KOG4163|consen 271 AFIPCSGRGIQGATSHHLGQNFSKMFEIVFEDPGEGEKEFVWQ-NSWGLS-TRTIGVMIMTHGDDKG-LVLPPRVAPVQ- 346 (551)
T ss_pred eeeccccccccccchhhhhHHHHHhhceeecCCCccchhheee-cccccc-cceeeEEEEEecCCcc-cccCCcccceE-
Confidence 999998777777777788888999999999988 28886 677766 9999999999999999 99999999999
Q ss_pred ceeeecC
Q psy1870 223 NKRIIGD 229 (264)
Q Consensus 223 ~~~~i~~ 229 (264)
+.||+-
T Consensus 347 -vVvvP~ 352 (551)
T KOG4163|consen 347 -VVVVPV 352 (551)
T ss_pred -EEEEec
Confidence 566654
No 37
>KOG1637|consensus
Probab=99.93 E-value=8.7e-27 Score=218.45 Aligned_cols=205 Identities=20% Similarity=0.306 Sum_probs=169.3
Q ss_pred chhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCce
Q psy1870 6 CNALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVY 85 (264)
Q Consensus 6 ~~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~ 85 (264)
+..||+.||+|.+. .++||+++.. .+++.|-|..|-+.+-|++...+|||+||++++.+|...|||+|+ ++.||.
T Consensus 221 ~~~LWe~SGHwqnY-~enmF~~e~e--ke~~~LKPMNCPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~SG--aLsGLT 295 (560)
T KOG1637|consen 221 NKKLWETSGHWQNY-SENMFKFEVE--KEEFALKPMNCPGHCLMFAHRDRSYRELPLRFADFGVLHRNEASG--ALSGLT 295 (560)
T ss_pred hhhhhhhccchhhh-hhhceeeeec--hhhhccCccCCCccccccccCCccHhhCCccccCcceeeeccccc--cccccc
Confidence 45799999999999 8899999864 467999999999999999999999999999999999999999985 799999
Q ss_pred eeEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcc------------
Q psy1870 86 RVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGR------------ 153 (264)
Q Consensus 86 R~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~------------ 153 (264)
|||.|.|.|+|+||+++|.+++++..++..+.+|.-+|..|.. .+++..- ..--|+|.|..++
T Consensus 296 RvRrFqQDDaHIFCt~~Qi~~Eik~~l~fl~~vY~~fgf~f~l-~lSTRPe----~~lG~l~~Wd~AE~~L~~al~e~g~ 370 (560)
T KOG1637|consen 296 RVRRFQQDDAHIFCTPDQVKEEIKGCLDFLDYVYGVFGFTFKL-NLSTRPE----KFLGDLETWDEAEFKLEEALNESGE 370 (560)
T ss_pred eeeeecccCceEEecCccHHHHHHHHHHHHHHHHHhcccccee-EeccChH----HhccCHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999988886 5565431 1222555553222
Q ss_pred --------cc-cc---ee---------EecC-Cccchh-hcccceeecCC------C-ceeE-EecccccHhHHHHHHHH
Q psy1870 154 --------KH-WG---EL---------SSCS-DCTDYQ-ARRLNIRTEDG------K-FAHT-LNGTACAIPRLLMALVE 202 (264)
Q Consensus 154 --------~~-~~---Ev---------~s~s-~~~D~q-a~rl~i~y~~~------~-~~ht-~~gtg~~v~Rll~alLE 202 (264)
+. |+ .| ..|. .+.||| +.||++.|.+. + +||. +-|+ ++|+++.|+|
T Consensus 371 pw~lN~GDGAFYGPKIDi~l~Dal~r~hQcaTIQLDFqLP~rFdL~y~~~~g~~erPVmIHRAIlGS---vERmiaiL~E 447 (560)
T KOG1637|consen 371 PWVLNPGDGAFYGPKIDITLDDALGRKHQCATIQLDFQLPIRFDLEYETEDGDLERPVMIHRAILGS---VERMIAILLE 447 (560)
T ss_pred CceecCCCcccccceeeeEhhhhcCcccceeeeeecccChhhcCceeecccccccchhhHHHHHhhh---HHHHHHHHHH
Confidence 11 11 11 1232 246888 68999999974 3 8896 6687 9999999999
Q ss_pred hccccCCceeccCCccccccceeeecCC
Q psy1870 203 THQNQDGTVNIPECLQPFMFNKRIIGDT 230 (264)
Q Consensus 203 ~~~~~~G~i~lP~~LaP~~~~~~~i~~~ 230 (264)
+++ | +||-||+|.| ..||+..
T Consensus 448 ~~~---g--kwPFWlSPRq--~~vIpVs 468 (560)
T KOG1637|consen 448 SYG---G--KWPFWLSPRQ--AVVIPVS 468 (560)
T ss_pred HhC---C--CCCeeeccce--EEEEECC
Confidence 998 7 8999999999 6777766
No 38
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.92 E-value=3.7e-24 Score=213.96 Aligned_cols=209 Identities=19% Similarity=0.291 Sum_probs=156.4
Q ss_pred hhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCcee
Q psy1870 7 NALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYR 86 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R 86 (264)
..+|.++|+++.. .++||++.|+. ++.++|+|+++.+++.++++...||++||+|++++|+|||+|.++ .++||.|
T Consensus 300 ~~l~~~~g~~~~~-~~~my~~~d~~-~~~~~LRP~~~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~--~~~Gl~R 375 (638)
T PRK00413 300 RELWETSGHWDHY-RENMFPTTESD-GEEYALKPMNCPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSG--ALHGLMR 375 (638)
T ss_pred HHHHHhcCChhhh-hhccceeecCC-CcEEEEecCCcHHHHHHHhCcCCChhhCCceeeeccCeecCCCCC--CCcCcce
Confidence 3678899988776 78999998877 789999999999999999999999999999999999999999863 4789999
Q ss_pred eEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCc-eEEEEccCC---CcCchhh-cc-------------cceee
Q psy1870 87 VHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIH-TRTLNMGAN---ELGAQAY-KK-------------YDVEA 148 (264)
Q Consensus 87 ~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglp-yr~v~~~~~---dl~~~a~-~~-------------ydiE~ 148 (264)
+|||+|.|+|+|+.++++.+++.++++.+.++|+.||++ |++ .+++. .+|.... .+ ++.+.
T Consensus 376 ~reF~q~~~~~~g~~~~~~~e~~eii~l~~~~~~~lg~~~~~i-~l~~r~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~ 454 (638)
T PRK00413 376 VRGFTQDDAHIFCTPEQIEEEVKKVIDLILDVYKDFGFEDYEV-KLSTRPEKRIGSDEMWDKAEAALKEALDELGLDYEI 454 (638)
T ss_pred eeeeEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCceEEE-EEecCCcccCCCHHHHHHHHHHHHHHHHHcCCCcee
Confidence 999999999999999998888899999999999999994 655 44442 2332221 00 00010
Q ss_pred ecCccc-------------ccceeEecC-Cccchh-hcccceeecCC------C-ceeEEecccccHhHHHHHHHHhccc
Q psy1870 149 WMPGRK-------------HWGELSSCS-DCTDYQ-ARRLNIRTEDG------K-FAHTLNGTACAIPRLLMALVETHQN 206 (264)
Q Consensus 149 w~p~~~-------------~~~Ev~s~s-~~~D~q-a~rl~i~y~~~------~-~~ht~~gtg~~v~Rll~alLE~~~~ 206 (264)
.++.. ...+...|+ ...||+ +++|++.|.+. + ++|. +.+.+++|+|++|+|+++
T Consensus 455 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~dl~Yt~~~~~~~~p~~i~~--~~~g~~eRli~~l~e~~~- 530 (638)
T PRK00413 455 -APGEGAFYGPKIDFQLKDALGREWQCGTIQLDFNLPERFDLTYVGEDGEKHRPVMIHR--AILGSMERFIGILIEHYA- 530 (638)
T ss_pred -cCCccccccceEEEEeecCCCCeEEeccEeecccChhhcCCEEECCCCCccCcEEEEe--cceehHHHHHHHHHHHcC-
Confidence 01110 112222333 234665 67899999876 1 4454 233369999999999986
Q ss_pred cCCceeccCCccccccceeeecCC
Q psy1870 207 QDGTVNIPECLQPFMFNKRIIGDT 230 (264)
Q Consensus 207 ~~G~i~lP~~LaP~~~~~~~i~~~ 230 (264)
| .||.|++|.+ +.||+..
T Consensus 531 --~--~~p~~~~p~~--v~Ii~~~ 548 (638)
T PRK00413 531 --G--AFPTWLAPVQ--VVVLPIT 548 (638)
T ss_pred --C--CCCcccCcce--EEEEEeC
Confidence 5 6999999998 5566543
No 39
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=99.87 E-value=2.1e-23 Score=187.10 Aligned_cols=173 Identities=20% Similarity=0.202 Sum_probs=138.4
Q ss_pred CceEEee----cCCCCCceEEeCCchHHHHHHHhccccCC-CCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEE
Q psy1870 22 SQIYHLE----PNYYGNGWCLSGTAEMGIARYLMNQTLPE-SQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMF 96 (264)
Q Consensus 22 ~~ly~i~----~~~~~~~~~L~pTaE~~i~~l~~~~~~sy-r~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~ 96 (264)
.+||.+. |+. +++++|+|+++++++..++....++ ++||++++|+|+|||+|+++ +.||+|+|||+|.|++
T Consensus 64 ~~mf~~~~g~~d~~-~~~~~Lrp~~~~~~~~~~~~~~~~~~~~lP~~~~qig~~fR~E~~~---~~gl~R~ReF~q~d~~ 139 (254)
T cd00774 64 ELMFKTSIGPVESG-GNLGYLRPETAQGIFVNFKNLLEFNRRKLPFGVAQIGKSFRNEISP---RNGLFRVREFTQAEIE 139 (254)
T ss_pred HHHheeeecccCCC-CcccccCCcccchHHHHHHHHHHHhCCCCCchhhhhchhhccccCc---ccceeeeccchhhhee
Confidence 3788876 223 5689999988887776666655554 59999999999999999964 5999999999999999
Q ss_pred EEcCcchHHHHHHHHHHHHHHHHHHhCCc---eEEEEccCCCcCchhhcccceeeecCcccccceeEecCCccchhhcc-
Q psy1870 97 GVTLPEDSEKQLEQFLQFEESLFGELGIH---TRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARR- 172 (264)
Q Consensus 97 ~f~~pe~s~~~~~~~~~~~~~i~~~Lglp---yr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~qa~r- 172 (264)
+||+|+++.++|+.+++.+.++|+++|++ +|+....+.++++++...+|+++..+. +|.|+.++++.+|++-..
T Consensus 140 ~f~~~~~~~e~~~~v~~~~~~~l~~~G~~~~~~r~~~~~~~e~a~ya~~~~d~~~~~~~--~w~e~~Gi~~~~~~~l~~~ 217 (254)
T cd00774 140 FFVDPEKSHPWFDYWADQRLKWLPKFAQSPENLRLTDHEKEELAHYANETLDYFYAFPH--GFLELEGIANRGDRFLQHH 217 (254)
T ss_pred eeECCCCchHHHHHHHHHHHHHHHHcCCCccceEEEecccHhhhhhhHHHHHHHHHHhh--hHHHHcCCCcchhHHHhCC
Confidence 99999999999999999999999999974 788889999999999999999887765 799999999998875321
Q ss_pred --cceeec----CC--Cc-eeEEecccccHhHHHHHHH
Q psy1870 173 --LNIRTE----DG--KF-AHTLNGTACAIPRLLMALV 201 (264)
Q Consensus 173 --l~i~y~----~~--~~-~ht~~gtg~~v~Rll~alL 201 (264)
..-.|. |. ++ +|.+..+| +++|...+|+
T Consensus 218 ~~e~a~y~~~~~d~~~~~~~~~~E~~g-~~dR~~~dLl 254 (254)
T cd00774 218 PNESAHYASDCWDAEKLYVPGWIEVSG-GADRTDYDLL 254 (254)
T ss_pred hhhhhchHHhccCcceeeCCceEEEee-eechHHhhcC
Confidence 111222 11 23 36666665 4599988874
No 40
>PRK07080 hypothetical protein; Validated
Probab=99.72 E-value=8.9e-17 Score=146.49 Aligned_cols=202 Identities=18% Similarity=0.155 Sum_probs=157.5
Q ss_pred chhhhhhcCCCCCCCCCceEEeecCC-----------------------CCCceEEeCCchHHHHHHHhcc-ccCCCCCc
Q psy1870 6 CNALECNSKINSKGERSQIYHLEPNY-----------------------YGNGWCLSGTAEMGIARYLMNQ-TLPESQLP 61 (264)
Q Consensus 6 ~~~l~~~~G~~~~~~~~~ly~i~~~~-----------------------~~~~~~L~pTaE~~i~~l~~~~-~~syr~LP 61 (264)
....|+++|.+-.+ ++.++.+..-. +..++.|.|.+|.+++.++... .+....
T Consensus 76 ~~~~~ek~~Y~ksF-P~l~~~V~~~~g~~~e~~~ll~~~~~~~~~~~~l~~~~~vL~pAaCyP~Yp~l~~~g~lp~~g-- 152 (317)
T PRK07080 76 SRAEFERSGYLKSF-PQLAGTVHSFCGNEAEHRRLLACLDRGEDWTESQKPTDVVLTPAACYPVYPVLARRGALPADG-- 152 (317)
T ss_pred CHHHHHhcChhhhC-cccceeecCCCCCCHHHHHHHHHHHhcCchhhhcCCCcceecccccccchhhhccCcccCCCC--
Confidence 34567788887766 88888774211 0347999999999999999875 444333
Q ss_pred ceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchh-
Q psy1870 62 KQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQA- 140 (264)
Q Consensus 62 l~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a- 140 (264)
..+--.|+|||+|-+ .++-|+.+|.|.|...+-+|+++.+.-+.+++....+.+.|||++++..+ +....+..
T Consensus 153 ~~~dv~g~CFR~E~s-----~dl~Rl~~F~mrE~V~iGt~e~v~~~r~~w~e~~~~l~~~LgL~~~ve~A-nDPFF~~~g 226 (317)
T PRK07080 153 RLVDVASYCFRHEPS-----LDPARMQLFRMREYVRIGTPEQIVAFRQSWIERGTAMADALGLPVEIDLA-NDPFFGRGG 226 (317)
T ss_pred cEEEeeeeeeccCCC-----CCcHHHhheeeeEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCceeEeec-CCccccccc
Confidence 555666799999974 57999999999999999999999999999999999999999999997543 33332211
Q ss_pred --------hcccceeeecC--cccccceeEecCCccchhhcccceeecCCCceeEEecccccHhHHHHHHHHhccccCCc
Q psy1870 141 --------YKKYDVEAWMP--GRKHWGELSSCSDCTDYQARRLNIRTEDGKFAHTLNGTACAIPRLLMALVETHQNQDGT 210 (264)
Q Consensus 141 --------~~~ydiE~w~p--~~~~~~Ev~s~s~~~D~qa~rl~i~y~~~~~~ht~~gtg~~v~Rll~alLE~~~~~~G~ 210 (264)
...+-.|.++| +......|+|++...|++.++++|+..+...+||. |.|+|++|+..||+.+|+.+-.
T Consensus 227 k~~a~~Qr~~~lKfEl~vpi~~~~~~tA~~S~NyH~dhFg~~f~I~~~~g~~ahTg-CvGFGlER~a~All~~hG~d~~- 304 (317)
T PRK07080 227 KIVAASQREQNLKFELLIPIYSDAPPTACMSFNYHMDHFGLTWGIRTADGAVAHTG-CVGFGLERLALALFRHHGLDPA- 304 (317)
T ss_pred hhhhhhhhhccceeEEEEecCCCCCceEEEEEehhhhccccccCcccCCCCEeEEe-eeecCHHHHHHHHHHHhCCChh-
Confidence 12334577766 44567888999989999999999998887899985 9999999999999999986543
Q ss_pred eeccCCccc
Q psy1870 211 VNIPECLQP 219 (264)
Q Consensus 211 i~lP~~LaP 219 (264)
.||+.++-
T Consensus 305 -~WP~~Vr~ 312 (317)
T PRK07080 305 -AWPAAVRD 312 (317)
T ss_pred -hccHHHHH
Confidence 68876543
No 41
>KOG2298|consensus
Probab=99.71 E-value=3.5e-18 Score=161.14 Aligned_cols=142 Identities=25% Similarity=0.309 Sum_probs=112.9
Q ss_pred CceEEeecCCC-CCceEEeCCchHHHH-HHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEc
Q psy1870 22 SQIYHLEPNYY-GNGWCLSGTAEMGIA-RYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVT 99 (264)
Q Consensus 22 ~~ly~i~~~~~-~~~~~L~pTaE~~i~-~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~ 99 (264)
|.||....+.+ +-..||||++.|+++ +|-+-....-+.||+.-+|||..||||+| ++.||+|+|||+|.|+.-|+
T Consensus 168 NLMF~T~IGpsG~~kgyLRPETAQG~FlNFkrlle~N~~KlPFA~AqiG~~fRNEIS---pRsGLlRvrEF~maEIEHFv 244 (599)
T KOG2298|consen 168 NLMFETQIGPSGGLKGYLRPETAQGQFLNFKRLLEFNQGKLPFASAQIGKSFRNEIS---PRSGLLRVREFTMAEIEHFV 244 (599)
T ss_pred ceeccccccCCCCcccccCccccccccccHHHHHHhcCCCCcchHHHhchHhhhccC---cccCceeEEEeehHHhhccC
Confidence 46776655543 457899999999988 66666678889999999999999999996 58999999999999999999
Q ss_pred Ccch-H-----------------------------------------HHHHHHHHHHHHHHHHHhCCc---eEEEEccCC
Q psy1870 100 LPED-S-----------------------------------------EKQLEQFLQFEESLFGELGIH---TRTLNMGAN 134 (264)
Q Consensus 100 ~pe~-s-----------------------------------------~~~~~~~~~~~~~i~~~Lglp---yr~v~~~~~ 134 (264)
.|++ + .++..+.+.....++.+|||. .|+.+.-+.
T Consensus 245 dP~~K~h~kF~~V~~~~l~l~~~~~q~~g~~a~~~~lgEaV~kg~V~netlGyfi~Ri~~fL~~lGid~~rlRFRqH~~n 324 (599)
T KOG2298|consen 245 DPLLKSHPKFSLVAAEKLRLFPRDKQLSGQSAQKVALGEAVAKGTVNNETLGYFIGRIYLFLNKLGIDKERLRFRQHMAN 324 (599)
T ss_pred CCCCCCChhhhhhhhhhhhhcchhhhhccchhhHhHHHHHHHhhccccchhHHHHHHHHHHHHHhCcchhhcchHHHhhh
Confidence 8852 1 112445555566778899995 777788889
Q ss_pred CcCchhhcccceeeecCcccccceeEecCCccch
Q psy1870 135 ELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDY 168 (264)
Q Consensus 135 dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~ 168 (264)
+|.++|...||.|.... -+|.|+..|.....|
T Consensus 325 EMAHYA~DCWDaEi~tS--YGWIEcVG~ADRs~y 356 (599)
T KOG2298|consen 325 EMAHYAFDCWDAEIKTS--YGWIECVGCADRAAY 356 (599)
T ss_pred hhhhhhccccchhhhhc--cCcEEEeeccchhhe
Confidence 99999999999987543 379999988764433
No 42
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.68 E-value=5.9e-16 Score=132.44 Aligned_cols=164 Identities=22% Similarity=0.310 Sum_probs=130.2
Q ss_pred ceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcc
Q psy1870 23 QIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPE 102 (264)
Q Consensus 23 ~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe 102 (264)
.+..+.+-. ++..+|||+...++..+++... +++|+++++++++||+|.+ ..++.|++||.|.+++.++.+.
T Consensus 41 ~~~~~~~~~-~~~~~LR~s~~~~l~~~~~~n~---~~~~~~lfeig~vfr~e~~----~~~~~~~~ef~~l~~~~~g~~~ 112 (211)
T cd00768 41 DLLPVGAEN-EEDLYLRPTLEPGLVRLFVSHI---RKLPLRLAEIGPAFRNEGG----RRGLRRVREFTQLEGEVFGEDG 112 (211)
T ss_pred heeeeecCC-CCEEEECCCCcHHHHHHHHhhc---ccCCEEEEEEcceeecCCC----ccccccceeEEEcCEEEEcCCc
Confidence 344444444 6789999999999998887765 7899999999999999973 1336789999999999999876
Q ss_pred hHHHHHHHHHHHHHHHHHHhCC--ceEEEEccCCCcC-chhhcccceeeecCcccccceeEecCCccchhhcccceeecC
Q psy1870 103 DSEKQLEQFLQFEESLFGELGI--HTRTLNMGANELG-AQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTED 179 (264)
Q Consensus 103 ~s~~~~~~~~~~~~~i~~~Lgl--pyr~v~~~~~dl~-~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~qa~rl~i~y~~ 179 (264)
+....+.+++..++++++.||+ +++++.....++. +....+++|.+|+|.. ++.|+++|..+.+.++++++++|.+
T Consensus 113 ~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~-~~~eig~~g~~~~~~~~~~~l~~~~ 191 (211)
T cd00768 113 EEASEFEELIELTEELLRALGIKLDIVFVEKTPGEFSPGGAGPGFEIEVDHPEG-RGLEIGSGGYRQDEQARAADLYFLD 191 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCcceEEEecCchhhccccCCceEEEEEEccCC-CeEEEeeceeecCchhHhhhhheec
Confidence 5445689999999999999997 5676534443333 2456788999998874 5689999999888889999999987
Q ss_pred C----CceeEEecccccHhHH
Q psy1870 180 G----KFAHTLNGTACAIPRL 196 (264)
Q Consensus 180 ~----~~~ht~~gtg~~v~Rl 196 (264)
+ ..+|+++++ +|++|+
T Consensus 192 ~~~~~~~p~~~~~~-~~~~R~ 211 (211)
T cd00768 192 EALEYRYPPTIGFG-LGLERL 211 (211)
T ss_pred ccccccCceeecCc-cCccCC
Confidence 6 378888555 999985
No 43
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=99.15 E-value=3.2e-10 Score=101.92 Aligned_cols=108 Identities=14% Similarity=0.180 Sum_probs=86.8
Q ss_pred hhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeE
Q psy1870 9 LECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVH 88 (264)
Q Consensus 9 l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~r 88 (264)
+|.++| .+.. .+++|++.|+. ++.++|+|+.+.+++.+++....+ .++|+|+|+++++||+|.+. ..|.|
T Consensus 34 ~~~~~~-~~~~-~~~~~~~~d~~-g~~l~LRpd~T~~iaR~~a~~~~~-~~~p~k~~y~g~vfR~e~~~------~g~~r 103 (261)
T cd00773 34 LFLRKS-GDEV-SKEMYRFKDKG-GRDLALRPDLTAPVARAVAENLLS-LPLPLKLYYIGPVFRYERPQ------KGRYR 103 (261)
T ss_pred Hhcccc-cccc-cceEEEEECCC-CCEEEeCCCCcHHHHHHHHhcCcc-CCCCeEEEEEcCEEecCCCC------CCCcc
Confidence 344444 3333 67999999887 889999999999999999887666 78999999999999999732 34899
Q ss_pred EEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCc-eEE
Q psy1870 89 CFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIH-TRT 128 (264)
Q Consensus 89 eF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglp-yr~ 128 (264)
||+|.++..|+.+.... -.+++....++++.||++ +.+
T Consensus 104 e~~Q~g~Eiig~~~~~~--daE~i~l~~~~l~~lg~~~~~i 142 (261)
T cd00773 104 EFYQVGVEIIGSDSPLA--DAEVIALAVEILEALGLKDFQI 142 (261)
T ss_pred ceEEeceeeeCCCChHH--HHHHHHHHHHHHHHcCCCceEE
Confidence 99999999998854322 267889999999999985 554
No 44
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=99.07 E-value=1.5e-09 Score=104.48 Aligned_cols=101 Identities=13% Similarity=0.203 Sum_probs=85.7
Q ss_pred CCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcC
Q psy1870 21 RSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTL 100 (264)
Q Consensus 21 ~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~ 100 (264)
..+||++.|.. ++.++|||....+++-++.....+++++|+|++++|++||+|.+ ..| |.|||+|.+++.|+.
T Consensus 63 ~~~my~~~d~~-g~~l~LRpd~T~~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e~~----q~G--R~Ref~Q~g~EiiG~ 135 (430)
T CHL00201 63 NKEMYRFTDRS-NRDITLRPEGTAGIVRAFIENKMDYHSNLQRLWYSGPMFRYERP----QSG--RQRQFHQLGIEFIGS 135 (430)
T ss_pred ccceEEEEcCC-CCEEEeCCCCcHHHHHHHHHccccccCCCeEEEEEcceecCCCC----cCC--ccceeEEeceEEECC
Confidence 56999999876 88999999999999998877667888999999999999999973 244 999999999999998
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCc-eEEEE
Q psy1870 101 PEDSEKQLEQFLQFEESLFGELGIH-TRTLN 130 (264)
Q Consensus 101 pe~s~~~~~~~~~~~~~i~~~Lglp-yr~v~ 130 (264)
++...+ .+++....++|+.||++ |.+..
T Consensus 136 ~~~~aD--~Evi~l~~~~l~~lGl~~~~i~l 164 (430)
T CHL00201 136 IDARAD--TEVIHLAMQIFNELQVKNLILDI 164 (430)
T ss_pred CChhhH--HHHHHHHHHHHHHcCCCceEEEE
Confidence 864332 56788899999999995 66543
No 45
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=98.91 E-value=1.4e-08 Score=96.41 Aligned_cols=106 Identities=15% Similarity=0.195 Sum_probs=84.5
Q ss_pred CCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEe
Q psy1870 14 KINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKI 93 (264)
Q Consensus 14 G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~ 93 (264)
|...+...++||++.|.. ++.++|+|....+++.+++.. .++.++|+|+|+++++||+|.+. .| |.|||+|.
T Consensus 52 g~~~~~~~~~~~~~~d~~-g~~l~LRpD~T~~iaR~~~~~-~~~~~~p~r~~y~g~vfR~e~~~----~g--r~ref~Q~ 123 (397)
T TIGR00442 52 GEETDIVEKEMYTFKDKG-GRSLTLRPEGTAPVARAVIEN-KLLLPKPFKLYYIGPMFRYERPQ----KG--RYRQFHQF 123 (397)
T ss_pred CccccccccceEEEECCC-CCEEeecCCCcHHHHHHHHhc-ccccCCCeEEEEEcCeecCCCCC----CC--cccceEEc
Confidence 443333357899999877 889999999999999887754 34678999999999999999732 23 89999999
Q ss_pred eEEEEcCcchHHHHHHHHHHHHHHHHHHhCCc-eEEE
Q psy1870 94 EMFGVTLPEDSEKQLEQFLQFEESLFGELGIH-TRTL 129 (264)
Q Consensus 94 E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglp-yr~v 129 (264)
+.++|..++... . .+++..+.++|+.||++ +++.
T Consensus 124 g~eiig~~~~~~-d-~E~i~l~~e~l~~lg~~~~~i~ 158 (397)
T TIGR00442 124 GVEVIGSDSPLA-D-AEIIALAAEILKELGIKDFTLE 158 (397)
T ss_pred CeeeeCCCCHHH-H-HHHHHHHHHHHHHcCCCceEEE
Confidence 999999886422 2 46888889999999996 6654
No 46
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=98.79 E-value=3.3e-08 Score=94.20 Aligned_cols=100 Identities=14% Similarity=0.250 Sum_probs=79.5
Q ss_pred cCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEE
Q psy1870 13 SKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTK 92 (264)
Q Consensus 13 ~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~ 92 (264)
.|.......++||++.|.. ++.++|+|....+++.+++.... +|+|+|+++++||+|.++ .| |.|||+|
T Consensus 55 ~g~~~~~~~~~~~~~~d~~-g~~l~LRpd~T~~~ar~~~~~~~----~p~r~~~~g~vfR~e~~~----~g--r~ref~Q 123 (412)
T PRK00037 55 VGEETDIVEKEMYTFQDKG-GRSLTLRPEGTAPVVRAVIEHKL----QPFKLYYIGPMFRYERPQ----KG--RYRQFHQ 123 (412)
T ss_pred cCcccccccceeEEEEcCC-CCEEEecCCCcHHHHHHHHhCCC----CCeEEEEEcCccccCCCC----CC--cccceEE
Confidence 3554322256999999876 88999999999999988775422 999999999999999742 23 8999999
Q ss_pred eeEEEEcCcc-hHHHHHHHHHHHHHHHHHHhCCce
Q psy1870 93 IEMFGVTLPE-DSEKQLEQFLQFEESLFGELGIHT 126 (264)
Q Consensus 93 ~E~~~f~~pe-~s~~~~~~~~~~~~~i~~~Lglpy 126 (264)
.++++|+.++ .++.+ ++..+.++|+.||++.
T Consensus 124 ~g~ei~g~~~~~~d~E---~i~~~~~~l~~lg~~~ 155 (412)
T PRK00037 124 FGVEVIGSDSPLADAE---VIALAADILKALGLKG 155 (412)
T ss_pred cCeeeeCCCCcchhHH---HHHHHHHHHHHcCCCc
Confidence 9999999885 34433 6778889999999973
No 47
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=98.79 E-value=6.3e-08 Score=92.45 Aligned_cols=160 Identities=19% Similarity=0.208 Sum_probs=103.6
Q ss_pred hhhhhcCCCCCC-CCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCcee
Q psy1870 8 ALECNSKINSKG-ERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYR 86 (264)
Q Consensus 8 ~l~~~~G~~~~~-~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R 86 (264)
.+|++.|..... ..+++|.+. +.++|+|+...+++.+++.. ..+.++|++++++|+|||+|.++ --+
T Consensus 234 e~~e~~g~~~g~~i~~~my~id-----eel~LRpsLtPsLlr~la~n-~k~~~~P~RIFEIG~VFR~E~~g------~~h 301 (417)
T PRK09537 234 EYIERMGIDNDTELSKQIFRVD-----KNFCLRPMLAPGLYNYLRKL-DRILPDPIKIFEIGPCYRKESDG------KEH 301 (417)
T ss_pred HHHHHhCCCCcccchhhheeeC-----CceEehhhhHHHHHHHHHhh-hhcccCCeeEEEEeceEecCCCC------CCC
Confidence 356777765321 246788863 46999999999998877532 34567899999999999999632 237
Q ss_pred eEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEecCCcc
Q psy1870 87 VHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCT 166 (264)
Q Consensus 87 ~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~ 166 (264)
++||+|.+...+.. ...|.++....+++|+.|||+|++... +...+ -+..+| + .++.|+... ..|
T Consensus 302 lrEf~Ql~~~iiGs----~~~f~dL~~lleeLL~~LGI~f~i~s~---~~fi~-GR~adI--~----~g~~el~~G-~fG 366 (417)
T PRK09537 302 LEEFTMVNFCQMGS----GCTRENLENIIDDFLKHLGIDYEIIGD---NCMVY-GDTIDI--M----HGDLELSSA-VVG 366 (417)
T ss_pred cceEEEEEEEEeCC----chHHHHHHHHHHHHHHHCCCCcEEecC---Cccee-cCeEEE--E----eCCEEEeeE-EEE
Confidence 89999998877632 344677889999999999999988622 21111 112222 1 123333110 111
Q ss_pred ch-hhcccceeecCCCceeEEecccccHhHHHHHHH
Q psy1870 167 DY-QARRLNIRTEDGKFAHTLNGTACAIPRLLMALV 201 (264)
Q Consensus 167 D~-qa~rl~i~y~~~~~~ht~~gtg~~v~Rll~alL 201 (264)
-- ..+.|+|.+. +.+.+++++|++...+
T Consensus 367 Ei~VLe~fGI~~P-------Vva~EIdLerL~~~~~ 395 (417)
T PRK09537 367 PIPLDREWGIDKP-------WIGAGFGLERLLKVKH 395 (417)
T ss_pred EEehhhhcCCCCc-------eEEEEEeHHHHHHHHh
Confidence 11 4567777532 4578889998876543
No 48
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=4.4e-08 Score=94.04 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=88.2
Q ss_pred hcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEE
Q psy1870 12 NSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFT 91 (264)
Q Consensus 12 ~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~ 91 (264)
+.|....--..+||.+.|++ ++.+.|||.--.+++-++........ .|+|+|.++++||+|. +-.| |.|||.
T Consensus 54 ~~Ge~td~v~kemY~F~Dkg-gr~laLRpe~Tapv~R~~~en~~~~~-~p~k~yy~g~vfRyEr----PQ~G--R~RqF~ 125 (429)
T COG0124 54 KSGEETDVVEKEMYTFKDKG-GRSLALRPELTAPVARAVAENKLDLP-KPLKLYYFGPVFRYER----PQKG--RYRQFY 125 (429)
T ss_pred ccCCcccccccceEEEEeCC-CCEEEecccCcHHHHHHHHhcccccc-CCeeEEEecceecCCC----CCCC--CceeeE
Confidence 34543322246999999998 89999999999999988876554444 8999999999999997 3344 999999
Q ss_pred EeeEEEEcCcc-hHHHHHHHHHHHHHHHHHHhCCc-eEEEEccCCCcC
Q psy1870 92 KIEMFGVTLPE-DSEKQLEQFLQFEESLFGELGIH-TRTLNMGANELG 137 (264)
Q Consensus 92 ~~E~~~f~~pe-~s~~~~~~~~~~~~~i~~~Lglp-yr~v~~~~~dl~ 137 (264)
|.+.-+|-.+. .++ .+++.+..++|+.|||. |++..-+-+.+.
T Consensus 126 Q~g~E~iG~~~~~~D---AEvi~l~~~~l~~lGi~~~~l~iN~~g~l~ 170 (429)
T COG0124 126 QFGVEVIGSDSPDAD---AEVIALAVEILEALGIGGFTLEINSRGILE 170 (429)
T ss_pred EcCeEEeCCCCcccC---HHHHHHHHHHHHHcCCCcEEEEEcCcccHH
Confidence 99999987664 222 35677888999999996 777555544443
No 49
>PLN02530 histidine-tRNA ligase
Probab=98.64 E-value=2e-07 Score=91.25 Aligned_cols=98 Identities=22% Similarity=0.332 Sum_probs=80.2
Q ss_pred CCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcC
Q psy1870 21 RSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTL 100 (264)
Q Consensus 21 ~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~ 100 (264)
.++||++.|+. ++.+.|||.--.+++-++.....+ ..+|+|+|.++++||+|.+ .+| |.|||+|.++..|..
T Consensus 126 ~~~~y~f~D~~-g~~l~LRpD~T~~iaR~~~~~~~~-~~~P~r~~y~g~vfR~e~~----q~g--r~REf~Q~giEiiG~ 197 (487)
T PLN02530 126 TDQLYNFEDKG-GRRVALRPELTPSLARLVLQKGKS-LSLPLKWFAIGQCWRYERM----TRG--RRREHYQWNMDIIGV 197 (487)
T ss_pred ccceEEEECCC-CCEEecCCCCcHHHHHHHHhcccc-cCCCeEEEEEcCEEcCcCC----CCC--CccceEEcCeeEeCC
Confidence 56899999987 889999999999999888764433 3699999999999999972 344 899999999999987
Q ss_pred cch-HHHHHHHHHHHHHHHHHHhCCc---eEEE
Q psy1870 101 PED-SEKQLEQFLQFEESLFGELGIH---TRTL 129 (264)
Q Consensus 101 pe~-s~~~~~~~~~~~~~i~~~Lglp---yr~v 129 (264)
+.. ++ .+++..+.++|+.|||+ |.+.
T Consensus 198 ~~~~aD---aEvi~l~~~~l~~lgl~~~~~~i~ 227 (487)
T PLN02530 198 PGVEAE---AELLAAIVTFFKRVGITSSDVGIK 227 (487)
T ss_pred CCcchh---HHHHHHHHHHHHHcCCCCCceEEE
Confidence 753 43 35777788899999995 6653
No 50
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=98.61 E-value=2.5e-07 Score=88.78 Aligned_cols=97 Identities=19% Similarity=0.268 Sum_probs=79.7
Q ss_pred CCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcC
Q psy1870 21 RSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTL 100 (264)
Q Consensus 21 ~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~ 100 (264)
.++||++.|+. ++.++|||....+++-+++.. ....+|+|+|.++++||+|.+ ..| |.|||.|.+...|..
T Consensus 62 ~~~~~~~~D~~-g~~l~LRpD~T~~iaR~va~~--~~~~~p~r~~y~g~vfR~~~~----~~g--r~rE~~Q~g~EiiG~ 132 (423)
T PRK12420 62 LKEIYTLTDQG-KRDLALRYDLTIPFAKVVAMN--PNIRLPFKRYEIGKVFRDGPI----KQG--RFREFIQCDVDIVGV 132 (423)
T ss_pred ccceEEEecCC-CceecccccccHHHHHHHHhC--cCCCCCeeEEEEcceECCCCC----CCC--ccceeEECCeeeECC
Confidence 56899999987 889999999999999888764 234689999999999999863 233 899999999999986
Q ss_pred cc-hHHHHHHHHHHHHHHHHHHhCCceEEE
Q psy1870 101 PE-DSEKQLEQFLQFEESLFGELGIHTRTL 129 (264)
Q Consensus 101 pe-~s~~~~~~~~~~~~~i~~~Lglpyr~v 129 (264)
+. .++ .+++..+.++++.||+++.+.
T Consensus 133 ~~~~ad---aEvi~la~~~l~~lg~~~~i~ 159 (423)
T PRK12420 133 ESVMAE---AELMSMAFELFRRLNLEVTIQ 159 (423)
T ss_pred CCCccc---HHHHHHHHHHHHHCCCCEEEE
Confidence 64 333 567778889999999987654
No 51
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=98.58 E-value=1.3e-06 Score=78.33 Aligned_cols=159 Identities=18% Similarity=0.155 Sum_probs=97.3
Q ss_pred CCceEEeecCCC--CCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEE
Q psy1870 21 RSQIYHLEPNYY--GNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGV 98 (264)
Q Consensus 21 ~~~ly~i~~~~~--~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f 98 (264)
..+.|.+.+..+ .+..+||...--.+...+ .+.+..|++++.+|+|||+|.. +. -.+.+|.|.|....
T Consensus 64 ~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~l----~~~~~~p~kif~iG~VyR~D~~---D~---th~~~f~Qleg~~~ 133 (247)
T PF01409_consen 64 MQDTFYISNPYSAEEDYSVLRTHTSPGQLRTL----NKHRPPPIKIFEIGKVYRRDEI---DA---THLPEFHQLEGLVV 133 (247)
T ss_dssp GTTSEBSCSSSBCECSSEEE-SSTHHHHHHHH----TTTSHSSEEEEEEEEEESSSCS---BS---SBESEEEEEEEEEE
T ss_pred cccceeeeccccccchhhhhhhhhhHHHHHHH----HHhcCCCeEEEecCceEecCCc---cc---ccCccceeEeeEEE
Confidence 457788855542 356777764443444333 4667799999999999999972 22 25679999999876
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHh-CCceEEEEccCCCcCchhhcccceeeecCcccccceeEecCCccchhhcccce--
Q psy1870 99 TLPEDSEKQLEQFLQFEESLFGEL-GIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNI-- 175 (264)
Q Consensus 99 ~~pe~s~~~~~~~~~~~~~i~~~L-glpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~qa~rl~i-- 175 (264)
...- .+..+....+.+++.| |....+...++---...-+.+.|+....+..++|.||..|.-.---..+.+++
T Consensus 134 ~~~~----~f~~Lk~~l~~l~~~lfG~~~~~r~~ps~fPftePs~e~~i~~~~~~~~~wiEvgg~G~vhP~Vl~~~gid~ 209 (247)
T PF01409_consen 134 DKNV----TFEDLKGTLEELLKELFGIDVKVRFRPSYFPFTEPSREADIYCGVCKGGGWIEVGGCGMVHPEVLENWGIDE 209 (247)
T ss_dssp ETTE-----HHHHHHHHHHHHHHHHTTTEEEEEEECEETTEEEEEEEEEEEECTTTTCEEEEEEEEEE-HHHHHHTT--T
T ss_pred eccc----chhHHHHHHHHHHHHHhhcccceEeecCCCCcccCCeEEEEEEeeccCCCceEEeecccccHhhhhccCcCc
Confidence 5532 3667778888899888 88733322332211111223444443335567899998875321112455666
Q ss_pred eecCCCceeEEecccccHhHHHHHH
Q psy1870 176 RTEDGKFAHTLNGTACAIPRLLMAL 200 (264)
Q Consensus 176 ~y~~~~~~ht~~gtg~~v~Rll~al 200 (264)
+| +.-+.|+|++|+....
T Consensus 210 ~~-------~~~A~G~GleRlam~~ 227 (247)
T PF01409_consen 210 EY-------PGFAFGLGLERLAMLK 227 (247)
T ss_dssp TS-------EEEEEEEEHHHHHHHH
T ss_pred cc-------eEEEecCCHHHHHHHH
Confidence 32 2447889999986544
No 52
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=98.58 E-value=6.4e-07 Score=87.20 Aligned_cols=147 Identities=18% Similarity=0.228 Sum_probs=96.7
Q ss_pred CceEEeCCchHHHHHHHhccccC--C-CC-CcceEEEecceeccCc-cCCccCCCceeeEEEEEeeEEEEcCcchHHHHH
Q psy1870 34 NGWCLSGTAEMGIARYLMNQTLP--E-SQ-LPKQIAAMSKCYRAEI-SVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQL 108 (264)
Q Consensus 34 ~~~~L~pTaE~~i~~l~~~~~~s--y-r~-LPl~l~q~s~~fR~E~-s~g~~~~GL~R~reF~~~E~~~f~~pe~s~~~~ 108 (264)
.++.||+-.-...+.++....-. + .. -|+++++++++||+|. ..+ |.+||+|+|..++..+- .+
T Consensus 326 ~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~Dat-------H~~eFhQ~Eg~vi~~~~----s~ 394 (494)
T PTZ00326 326 RKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETLDAT-------HLAEFHQVEGFVIDRNL----TL 394 (494)
T ss_pred ccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCCCCC-------cCceeEEEEEEEEeCCC----CH
Confidence 46889885554555444432111 1 22 3999999999999997 222 88999999999987764 35
Q ss_pred HHHHHHHHHHHHHhCC-ceEEEEccCCCcCchhhcccceeeecCcccccceeEecCCccchhhcccceeecCCCceeEEe
Q psy1870 109 EQFLQFEESLFGELGI-HTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDGKFAHTLN 187 (264)
Q Consensus 109 ~~~~~~~~~i~~~Lgl-pyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~qa~rl~i~y~~~~~~ht~~ 187 (264)
..++.....+|++||+ ..|+. |+ -+..-.-.+.++++.|..++|.||.+|....--..+.+++. . -.+..
T Consensus 395 ~~L~~~l~~f~~~lG~~~~Rfr--P~--yfPfTEPS~Ev~v~~~~~gkWIEIgg~Gm~rpevL~~~Gi~---~--~~~~~ 465 (494)
T PTZ00326 395 GDLIGTIREFFRRIGITKLRFK--PA--FNPYTEPSMEIFGYHPGLKKWVEVGNSGIFRPEMLRPMGFP---E--DVTVI 465 (494)
T ss_pred HHHHHHHHHHHHhcCCCceEEe--cC--CCCCCCCeeEEEEEecCCCcEEEEeCcCccCHHHHHhcCCC---C--cceEE
Confidence 6778888899999998 34442 21 11112223567788888888999988775431223455652 1 12345
Q ss_pred cccccHhHHHHHH
Q psy1870 188 GTACAIPRLLMAL 200 (264)
Q Consensus 188 gtg~~v~Rll~al 200 (264)
+.|+|++|+....
T Consensus 466 A~GlGleRlaMi~ 478 (494)
T PTZ00326 466 AWGLSLERPTMIK 478 (494)
T ss_pred EEEecHHHHHHHH
Confidence 8899999986543
No 53
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=98.49 E-value=8e-07 Score=82.14 Aligned_cols=98 Identities=16% Similarity=0.221 Sum_probs=81.3
Q ss_pred CCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcC
Q psy1870 21 RSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTL 100 (264)
Q Consensus 21 ~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~ 100 (264)
.++||++.|.. ++.++|+|.-..+++.+++.... ..++|+|++.+|++||+|.+ |.-|.|||+|.+...|..
T Consensus 49 ~~~~~~~~d~~-g~~l~LRpD~T~~iaR~~~~~~~-~~~~p~r~~y~g~VfR~~~~------~~gr~re~~Q~g~Eiig~ 120 (314)
T TIGR00443 49 NEDLFKLFDSL-GRVLGLRPDMTTPIARAVSTRLR-DRPLPLRLCYAGNVFRTNES------GAGRSREFTQAGVELIGA 120 (314)
T ss_pred hhceEEEECCC-CCEEeecCcCcHHHHHHHHHhcc-cCCCCeEEEEeceEeecCCC------cCCCcccccccceEEeCC
Confidence 56999999887 88999999988899988775433 56789999999999999973 344899999999999998
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCC-ceEE
Q psy1870 101 PEDSEKQLEQFLQFEESLFGELGI-HTRT 128 (264)
Q Consensus 101 pe~s~~~~~~~~~~~~~i~~~Lgl-pyr~ 128 (264)
+....+ .+++....++++.||+ ++.+
T Consensus 121 ~~~~ad--aEvi~l~~~~l~~lg~~~~~i 147 (314)
T TIGR00443 121 GGPAAD--AEVIALLIEALKALGLKDFKI 147 (314)
T ss_pred CCchhH--HHHHHHHHHHHHHcCCCCeEE
Confidence 765433 4888999999999999 4655
No 54
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=6e-06 Score=76.82 Aligned_cols=155 Identities=15% Similarity=0.121 Sum_probs=92.9
Q ss_pred CCceEEeecCCCCCceEEeCCchHHHH--HHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEE
Q psy1870 21 RSQIYHLEPNYYGNGWCLSGTAEMGIA--RYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGV 98 (264)
Q Consensus 21 ~~~ly~i~~~~~~~~~~L~pTaE~~i~--~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f 98 (264)
-.+.|.+++.. +.+.|| ||..++. .|..+... |+++..++++||+|... -..+.+|+|+|..+.
T Consensus 158 mqDTFy~~~~~--~~~lLR-THTs~vq~R~l~~~~~~-----P~k~~~~grvyR~D~~D------aTHs~~FhQiEGlvv 223 (335)
T COG0016 158 MQDTFYLKDDR--EKLLLR-THTSPVQARTLAENAKI-----PIKIFSPGRVYRNDTVD------ATHSPEFHQIEGLVV 223 (335)
T ss_pred ccceEEEcCCC--Cceeec-ccCcHhhHHHHHhCCCC-----CceEecccceecCCCCC------cccchheeeeEEEEE
Confidence 45777777532 234554 5555544 44433222 99999999999999621 225689999999888
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHhC-CceEEEEccCCCcCchhhcccceeeecCcccccceeEecCCccchhhcccceee
Q psy1870 99 TLPEDSEKQLEQFLQFEESLFGELG-IHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRT 177 (264)
Q Consensus 99 ~~pe~s~~~~~~~~~~~~~i~~~Lg-lpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~qa~rl~i~y 177 (264)
...-. +..+....++++..++ ....+...|+- ...-.-.+.+++|++.+++|.||..|.-.-.--.+..|+.
T Consensus 224 d~~~s----~~~Lkg~L~~f~~~~fg~~~~vRfrpsy--FPFTEPS~Evdv~~~~~~~WlEi~G~Gmv~P~VL~~~G~~- 296 (335)
T COG0016 224 DKNIS----FADLKGTLEEFAKKFFGEDVKVRFRPSY--FPFTEPSAEVDVYCPGCGGWLEILGCGMVHPNVLEAVGID- 296 (335)
T ss_pred eCCcc----HHHHHHHHHHHHHHhcCCCcceEeecCC--CCCCCCeEEEEEEEcCCCCEEEEecccccCHHHHHhcCCC-
Confidence 77644 5566666666776665 33122122221 1111224577889998888999998764322224556641
Q ss_pred cCCCceeEEecccccHhHHHHH
Q psy1870 178 EDGKFAHTLNGTACAIPRLLMA 199 (264)
Q Consensus 178 ~~~~~~ht~~gtg~~v~Rll~a 199 (264)
+ -..+--+.|+|++|+...
T Consensus 297 --~-~~~~GfAfGlGlERlAML 315 (335)
T COG0016 297 --P-EEYSGFAFGLGLERLAML 315 (335)
T ss_pred --C-CcceEEEEeecHHHHHHH
Confidence 1 111223678999998543
No 55
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.16 E-value=1.1e-05 Score=73.60 Aligned_cols=93 Identities=12% Similarity=0.173 Sum_probs=76.5
Q ss_pred CCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcC
Q psy1870 21 RSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTL 100 (264)
Q Consensus 21 ~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~ 100 (264)
.++||++.|.. ++.+.|||.--.+++-+++... ....+|+|++.++++||+|. |||+|..+-.+-.
T Consensus 57 ~~~~y~~~D~~-g~~l~LRpD~T~~iaR~~a~~~-~~~~~p~r~~Y~g~vfR~~~------------rEf~Q~GvEliG~ 122 (281)
T PRK12293 57 EKELIRFSDEK-NHQISLRADSTLDVVRIVTKRL-GRSTEHKKWFYIQPVFRYPS------------NEIYQIGAELIGE 122 (281)
T ss_pred hhceEEEECCC-CCEEEECCcCCHHHHHHHHHhc-ccCCCceeEEEeccEEecCC------------CcccccCeEeeCC
Confidence 56999999986 8899999999999998886532 23478999999999999972 7999999998876
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCceEEEEccC
Q psy1870 101 PEDSEKQLEQFLQFEESLFGELGIHTRTLNMGA 133 (264)
Q Consensus 101 pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~ 133 (264)
+.. .+++..+.+.++.||+++. +++..
T Consensus 123 ~~~-----~Evi~la~~~l~~lgl~~~-i~ig~ 149 (281)
T PRK12293 123 EDL-----SEILNIAAEIFEELELEPI-LQISN 149 (281)
T ss_pred CCH-----HHHHHHHHHHHHHcCCCCE-EEECC
Confidence 653 3889999999999999975 55443
No 56
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=98.13 E-value=2.5e-05 Score=76.57 Aligned_cols=151 Identities=17% Similarity=0.206 Sum_probs=98.0
Q ss_pred eEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcch
Q psy1870 24 IYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPED 103 (264)
Q Consensus 24 ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~ 103 (264)
+|.+.+.. .+++.|||..-.+++.++.. ..+.|++++++|++||+|... .+ |++||.|.+......+-.
T Consensus 318 ~y~~~~~~-~~~~~LR~~~T~~~~r~l~~----~~~~p~rlFeiGrVFR~e~~d----~~--~l~Ef~ql~~~i~G~~~~ 386 (489)
T PRK04172 318 GYKWDEDI-AKRLVLRTHTTALSARYLAS----RPEPPQKYFSIGRVFRPDTID----AT--HLPEFYQLEGIVMGEDVS 386 (489)
T ss_pred cCCcchhh-hhccccccCChHHHHHHHHh----cCCCCeEEEEecceEcCCCCC----cc--cCCchheEEEEEEeCCCC
Confidence 45554444 56799999888888877665 346899999999999999621 11 348999999988876422
Q ss_pred HHHHHHHHHHHHHHHHHHhCCc-eEEEEccCCCcCchhhcccceeeecCcccccceeEecCCccchhhcccceeecCCCc
Q psy1870 104 SEKQLEQFLQFEESLFGELGIH-TRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDGKF 182 (264)
Q Consensus 104 s~~~~~~~~~~~~~i~~~Lglp-yr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~qa~rl~i~y~~~~~ 182 (264)
|..+....+.+++.||++ +++. ++..-.. .....+.++.++ .+|.||+.|.-.---..+.++|...
T Consensus 387 ----f~elkg~l~~ll~~lGi~~~~~~--~~~~p~~--~P~~~~~i~~~g-~~w~eiG~~G~l~Pevl~~~gi~~~---- 453 (489)
T PRK04172 387 ----FRDLLGILKEFYKRLGFEEVKFR--PAYFPFT--EPSVEVEVYHEG-LGWVELGGAGIFRPEVLEPLGIDVP---- 453 (489)
T ss_pred ----HHHHHHHHHHHHHHhCCceEEEc--CCcCCCC--CCeEEEEEEECC-CCeEEEEeccccCHHHHHHCCCCCc----
Confidence 678888999999999995 5542 2111111 112234444544 3488887655321113466777431
Q ss_pred eeEEecccccHhHHHHHHH
Q psy1870 183 AHTLNGTACAIPRLLMALV 201 (264)
Q Consensus 183 ~ht~~gtg~~v~Rll~alL 201 (264)
+.+.+++++|++...+
T Consensus 454 ---v~~~el~le~l~m~~~ 469 (489)
T PRK04172 454 ---VLAWGLGIERLAMLRL 469 (489)
T ss_pred ---eEEEEEcHHHHHHHHh
Confidence 3467788999865543
No 57
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=98.13 E-value=4.6e-05 Score=74.20 Aligned_cols=146 Identities=16% Similarity=0.166 Sum_probs=90.2
Q ss_pred CceEEeC-CchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcchHHHHHHHHH
Q psy1870 34 NGWCLSG-TAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFL 112 (264)
Q Consensus 34 ~~~~L~p-TaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~s~~~~~~~~ 112 (264)
+.+.||. |+...+-.|..... ...-|++++.++++||+|.-. =..+.+|+|+|..+....-. +..++
T Consensus 316 ~~~vLRTHTTa~s~r~L~~~~~--~~~~p~k~fsigrVfR~d~iD------atH~~eFhQ~EG~vvd~~~t----~~~L~ 383 (492)
T PLN02853 316 NKNLLRTHTTAVSSRMLYKLAQ--KGFKPKRYFSIDRVFRNEAVD------RTHLAEFHQVEGLVCDRGLT----LGDLI 383 (492)
T ss_pred cccccCCCCCHHHHHHHHHhhc--cCCCCcEEEeccceecCCCCC------cccCccceeEEEEEEeCCCC----HHHHH
Confidence 3566665 44444445553221 224699999999999999711 11567999999998865422 55677
Q ss_pred HHHHHHHHHhCCc-eEEEEccCCCcCchhhcccceeeecCcccccceeEecCCccchhhcccceeecCCCceeEEecccc
Q psy1870 113 QFEESLFGELGIH-TRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDGKFAHTLNGTAC 191 (264)
Q Consensus 113 ~~~~~i~~~Lglp-yr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~qa~rl~i~y~~~~~~ht~~gtg~ 191 (264)
.....||.+||.. .|+ .|+- +..-.-.+.+++|.+..++|.||..|.-.---..+.+++. . ..+..+.|+
T Consensus 384 g~l~~f~~~lg~~~~Rf--rP~y--fPfTEPS~Ei~v~~~~~gkWiEi~g~Gm~rpevl~~~Gi~---~--~~~~~A~Gl 454 (492)
T PLN02853 384 GVLEDFFSRLGMTKLRF--KPAY--NPYTEPSMEIFSYHEGLKKWVEVGNSGMFRPEMLLPMGLP---E--DVNVIAWGL 454 (492)
T ss_pred HHHHHHHHHcCCceEEE--ecCC--CCCCCCeEEEEEEecCCCCEEEEecCcCcCHHHHHhCCCC---C--cceEEEEEe
Confidence 7778899998872 333 2321 1222223455667777667999987764221224456661 1 123458899
Q ss_pred cHhHHHHHH
Q psy1870 192 AIPRLLMAL 200 (264)
Q Consensus 192 ~v~Rll~al 200 (264)
|++|+....
T Consensus 455 GleRlaMl~ 463 (492)
T PLN02853 455 SLERPTMIL 463 (492)
T ss_pred cHHHHHHHH
Confidence 999986543
No 58
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=98.11 E-value=2.6e-05 Score=74.91 Aligned_cols=160 Identities=19% Similarity=0.211 Sum_probs=98.4
Q ss_pred hhhhhcCCCCC-CCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCcee
Q psy1870 8 ALECNSKINSK-GERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYR 86 (264)
Q Consensus 8 ~l~~~~G~~~~-~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R 86 (264)
.++++-|.... ...+++|.+. +.++|||+...+++.++.... ....+|+|++++|++||+|... . -|
T Consensus 270 E~~E~m~~~~g~eI~n~Iyk~e-----e~lvLRPdLTPsLaR~La~N~-~~l~~PqKIFEIGkVFR~E~~~----~--th 337 (453)
T TIGR02367 270 EYIERMGIDNDTELSKQIFRVD-----KNFCLRPMLAPNLYNYLRKLD-RALPDPIKIFEIGPCYRKESDG----K--EH 337 (453)
T ss_pred HHHHhhcCccCCcccccceEec-----CceEecccCHHHHHHHHHHhh-hhccCCeeEEEEcCeEecCCCC----C--CC
Confidence 34555554321 1245888864 469999999888887665421 1236899999999999999731 2 27
Q ss_pred eEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEecCCcc
Q psy1870 87 VHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCT 166 (264)
Q Consensus 87 ~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~ 166 (264)
++||+|.+..++..+.. |.++......+|+.||+.|++.+.+. .+.+ +.-+|. .+|.|+.. ...+
T Consensus 338 lREF~QL~~eIaG~~at----faDlealL~e~Lr~LGIdfeitE~s~-FI~G---R~A~I~------~G~~Ev~~-GvfG 402 (453)
T TIGR02367 338 LEEFTMLNFCQMGSGCT----RENLEAIIKDFLDHLEIDFEIVGDSC-MVYG---DTLDIM------HGDLELSS-AVVG 402 (453)
T ss_pred cCeEEEEEEEEECCCCC----HHHHHHHHHHHHHHCCCceEEeCCCc-eEec---ceeeee------cCCEEEee-EEEe
Confidence 89999999998876543 33444577889999999988853211 1111 111211 12344411 0001
Q ss_pred ch-hhcccceeecCCCceeEEecccccHhHHHHHHH
Q psy1870 167 DY-QARRLNIRTEDGKFAHTLNGTACAIPRLLMALV 201 (264)
Q Consensus 167 D~-qa~rl~i~y~~~~~~ht~~gtg~~v~Rll~alL 201 (264)
-- -.+.|+|.+- +.+.+++++|++...+
T Consensus 403 EihpL~~fGIe~P-------VvAfEI~LeRLam~~~ 431 (453)
T TIGR02367 403 PIPLDREWGIDKP-------WIGAGFGLERLLKVKH 431 (453)
T ss_pred ecccccccCCCCc-------cEEEEeehhHHHHHHh
Confidence 00 1456666431 4588899999876654
No 59
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.09 E-value=2.6e-05 Score=73.98 Aligned_cols=93 Identities=15% Similarity=0.250 Sum_probs=74.0
Q ss_pred CCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcC
Q psy1870 21 RSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTL 100 (264)
Q Consensus 21 ~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~ 100 (264)
..+||++.|.. ++.++|||.--.+++-++... ....|+|+|.++++||+| .| |.|||+|.+.-.|-.
T Consensus 46 ~~~~~~f~D~~-G~~l~LRpD~T~piaR~~~~~---~~~~p~R~~Y~g~VfR~~--~g-------r~rEf~Q~GvEiiG~ 112 (373)
T PRK12295 46 RRRIFVTSDEN-GEELCLRPDFTIPVCRRHIAT---AGGEPARYAYLGEVFRQR--RD-------RASEFLQAGIESFGR 112 (373)
T ss_pred hcceEEEECCC-CCEEeeCCCCcHHHHHHHHHc---CCCCCeEEEEEccEEECC--CC-------CCCcceEeeEEeeCC
Confidence 35899999987 889999999999999776543 246799999999999998 22 679999999999975
Q ss_pred cc--hHHHHHHHHHHHHHHHHHHhCCc-eEEE
Q psy1870 101 PE--DSEKQLEQFLQFEESLFGELGIH-TRTL 129 (264)
Q Consensus 101 pe--~s~~~~~~~~~~~~~i~~~Lglp-yr~v 129 (264)
++ .++ .+++....++++.||+. +.+.
T Consensus 113 ~~~~~aD---aEvi~l~~~~L~~lgl~~~~i~ 141 (373)
T PRK12295 113 ADPAAAD---AEVLALALEALAALGPGDLEVR 141 (373)
T ss_pred CCCccch---HHHHHHHHHHHHHcCCCceEEE
Confidence 43 333 35677788899999985 6653
No 60
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.07 E-value=2.4e-05 Score=74.50 Aligned_cols=98 Identities=15% Similarity=0.147 Sum_probs=78.8
Q ss_pred CCceEEeecC-CCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEc
Q psy1870 21 RSQIYHLEPN-YYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVT 99 (264)
Q Consensus 21 ~~~ly~i~~~-~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~ 99 (264)
..+||++.|. + ++.+.|||.--.+++-+++.. ......|+|+|.++++||+|.+ +.-|.|||.|.+.-.|.
T Consensus 59 ~~~~~~f~d~~~-g~~l~LRpD~T~~iaR~~a~~-~~~~~~p~r~~y~g~vfR~~~~------~~gr~ref~Q~g~EiiG 130 (391)
T PRK12292 59 DLRTFKLVDQLS-GRTLGLRPDMTAQIARIAATR-LANRPGPLRLCYAGNVFRAQER------GLGRSREFLQSGVELIG 130 (391)
T ss_pred hhhhEEEeecCC-CCEEEECCCCcHHHHHHHHHh-ccCCCCCeEEEeeceeeecCCC------cCCCccchhccceEEeC
Confidence 4689999998 6 889999999999999887753 2344689999999999999962 22289999999999998
Q ss_pred Ccch-HHHHHHHHHHHHHHHHHHhCCc-eEEE
Q psy1870 100 LPED-SEKQLEQFLQFEESLFGELGIH-TRTL 129 (264)
Q Consensus 100 ~pe~-s~~~~~~~~~~~~~i~~~Lglp-yr~v 129 (264)
.+.. ++ .+++....++++.||++ |.+.
T Consensus 131 ~~~~~aD---aEvi~l~~~~l~~lgl~~~~i~ 159 (391)
T PRK12292 131 DAGLEAD---AEVILLLLEALKALGLPNFTLD 159 (391)
T ss_pred CCCchHH---HHHHHHHHHHHHHcCCCCeEEE
Confidence 6643 33 37888889999999995 6553
No 61
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=98.02 E-value=7.7e-05 Score=72.11 Aligned_cols=145 Identities=17% Similarity=0.234 Sum_probs=91.0
Q ss_pred CceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcchHHHHHHHHHH
Q psy1870 34 NGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQ 113 (264)
Q Consensus 34 ~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~s~~~~~~~~~ 113 (264)
..+.||...--+....+.. +.....+|++++.+|+|||+|... +. -++++|.|.|.......-. |..+..
T Consensus 181 ~~~lLRTHTTpgqirtL~~-L~~~~~~PiRIFsIGRVfRrD~~~--Da---THl~eFhQlEGLVVdedVS----f~DLKg 250 (533)
T TIGR00470 181 TTLTLRSHMTSGWFITLSS-IIDKRKLPLKLFSIDRCFRREQRE--DR---SHLMTYHSASCVVVDEEVS----VDDGKA 250 (533)
T ss_pred hCcccccCChhHHHHHHHH-HhhcCCCCeEEEeeeeEEecCCCC--CC---ccCceeeeEEEEEECCCCC----HHHHHH
Confidence 3566666443333322221 122456899999999999999521 11 2579999999988776433 667777
Q ss_pred HHHHHHHHhCCc-eEEEEccCCC--c-CchhhcccceeeecCcccccceeEecCCccchhhcccceeecCCCceeEEecc
Q psy1870 114 FEESLFGELGIH-TRTLNMGANE--L-GAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDGKFAHTLNGT 189 (264)
Q Consensus 114 ~~~~i~~~Lglp-yr~v~~~~~d--l-~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~qa~rl~i~y~~~~~~ht~~gt 189 (264)
..+.+++.||+. +|+. ++.. . .+. ..+..+.++.|...+|.||..|.-..---.+.++|.+. ....
T Consensus 251 vLe~LLr~LG~~~vRFR--PsekrskyYFP-FTEaEVdV~~~k~~gWiEIgG~GmVhPeVL~~~GId~P-------V~AF 320 (533)
T TIGR00470 251 VAEGLLAQFGFTKFRFR--PDEKKSKYYIP-ETQTEVYAYHPKLGEWIEVATFGVYSPIALAKYNIDVP-------VMNL 320 (533)
T ss_pred HHHHHHHHhCCceEEec--cCcCCCCCcCC-CceEEEEEEccCCCceEEEEeccccCHHHHHHcCCCCc-------eEEE
Confidence 788899999974 5553 3311 1 111 11246667777777899998876433223456677432 1478
Q ss_pred cccHhHHHH
Q psy1870 190 ACAIPRLLM 198 (264)
Q Consensus 190 g~~v~Rll~ 198 (264)
|+|++|+..
T Consensus 321 GIGVERlAM 329 (533)
T TIGR00470 321 GLGVERLAM 329 (533)
T ss_pred EecHHHHHH
Confidence 899999844
No 62
>PLN02972 Histidyl-tRNA synthetase
Probab=97.92 E-value=8.1e-05 Score=76.02 Aligned_cols=94 Identities=21% Similarity=0.233 Sum_probs=75.3
Q ss_pred CceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCc
Q psy1870 22 SQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLP 101 (264)
Q Consensus 22 ~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~p 101 (264)
.+||++.|+. ++.+.|||.--.+++-++.... ..|+|+|+++++||+|.+ ..| |.|||.|.+.-++-..
T Consensus 383 k~mY~f~D~g-Gr~LaLRPDlTvPiAR~vA~n~----~~p~KrYyiG~VFR~e~p----qkG--R~REF~Q~G~EIIG~~ 451 (763)
T PLN02972 383 KLIYDLADQG-GELCSLRYDLTVPFARYVAMNG----ITSFKRYQIAKVYRRDNP----SKG--RYREFYQCDFDIAGVY 451 (763)
T ss_pred hheEEEECCC-CCEEEeCCCChHHHHHHHHhCC----CCcceEEEeccEEecCCC----CCC--CCccceEEeEEEEcCC
Confidence 4899999987 8899999999999998877542 248999999999999963 355 8899999999999753
Q ss_pred c--hHHHHHHHHHHHHHHHHHHhCCc-eEEE
Q psy1870 102 E--DSEKQLEQFLQFEESLFGELGIH-TRTL 129 (264)
Q Consensus 102 e--~s~~~~~~~~~~~~~i~~~Lglp-yr~v 129 (264)
+ .++ .+++....++++.||++ |.+.
T Consensus 452 ~~~~aD---AEVI~La~E~L~~LGi~df~I~ 479 (763)
T PLN02972 452 EPMGPD---FEIIKVLTELLDELDIGTYEVK 479 (763)
T ss_pred Ccchhh---HHHHHHHHHHHHhCCCCceEEE
Confidence 2 233 35777888999999994 6653
No 63
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=97.91 E-value=0.0004 Score=64.99 Aligned_cols=151 Identities=17% Similarity=0.194 Sum_probs=86.1
Q ss_pred CceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCc
Q psy1870 22 SQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLP 101 (264)
Q Consensus 22 ~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~p 101 (264)
.+.|.|. +...||...--.....+.+ ..+|+++..+|++||++... -.+..+|+|+|.......
T Consensus 156 ~DTfyI~-----~~~lLRThTSp~qir~L~~-----~~~Pirif~~G~VyR~D~~D------atH~~~FhQleglvvd~~ 219 (339)
T PRK00488 156 QDTFYID-----DGLLLRTHTSPVQIRTMEK-----QKPPIRIIAPGRVYRNDSDD------ATHSPMFHQVEGLVVDKN 219 (339)
T ss_pred CceEEEc-----CCceeeccCcHHHHHHHHh-----cCCCeEEEEeeeEEEcCCCC------cccCcceeeEEEEEEeCC
Confidence 4677774 3477777554444444433 67899999999999998611 125789999999988765
Q ss_pred chHHHHHHHHHHHHHHHHHHh-C--CceEEEEccCCCcCchhhcccceeeecCc--------ccccceeEecCCccchhh
Q psy1870 102 EDSEKQLEQFLQFEESLFGEL-G--IHTRTLNMGANELGAQAYKKYDVEAWMPG--------RKHWGELSSCSDCTDYQA 170 (264)
Q Consensus 102 e~s~~~~~~~~~~~~~i~~~L-g--lpyr~v~~~~~dl~~~a~~~ydiE~w~p~--------~~~~~Ev~s~s~~~D~qa 170 (264)
-. |..+....+.+++.| | +..|. .|+---.-.-|.+.|+.....+ ..+|.||..|.-..--..
T Consensus 220 vt----f~dLK~~L~~fl~~~fg~~~~~R~--rpsyFPFTePS~Evdv~~~~~~g~gc~~ck~~~WiEilG~Gmv~p~vl 293 (339)
T PRK00488 220 IS----FADLKGTLEDFLKAFFGEDVKIRF--RPSYFPFTEPSAEVDVSCFKCGGKGCRVCKGTGWLEILGCGMVHPNVL 293 (339)
T ss_pred CC----HHHHHHHHHHHHHHHcCCCCeEEe--cCCCCCCCCCceEEEEEEeccCCCcccccCCCCceEEeccCccCHHHH
Confidence 33 455555555566555 4 33333 2321111112335555432111 236999988764321123
Q ss_pred cccceeecCCCceeEEecccccHhHHHH
Q psy1870 171 RRLNIRTEDGKFAHTLNGTACAIPRLLM 198 (264)
Q Consensus 171 ~rl~i~y~~~~~~ht~~gtg~~v~Rll~ 198 (264)
+..+|. + -.++--..|+|++|+..
T Consensus 294 ~~~gid---~-~~~~G~AfG~GleRlaM 317 (339)
T PRK00488 294 RNVGID---P-EEYSGFAFGMGIERLAM 317 (339)
T ss_pred HHcCCC---c-ccceEEEEeecHHHHHH
Confidence 444441 1 12233466899999854
No 64
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=97.87 E-value=0.00033 Score=63.63 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=49.6
Q ss_pred CCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEE-Ec
Q psy1870 21 RSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG-VT 99 (264)
Q Consensus 21 ~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~ 99 (264)
..+.|.+.....+++++|+-..+..+-.+... . +. ++|++++|||+| +. +. -|++||+|.|.+. |.
T Consensus 36 ~~~~f~~~~~~~g~~~~L~~Spql~~~~~~~~----~--~~-~vf~i~~~fR~e-~~---~~--~hl~EF~~le~e~~~~ 102 (269)
T cd00669 36 GARPFLVKYNALGLDYYLRISPQLFKKRLMVG----G--LD-RVFEINRNFRNE-DL---RA--RHQPEFTMMDLEMAFA 102 (269)
T ss_pred ccceEEeeecCCCCcEEeecCHHHHHHHHHhc----C--CC-cEEEEecceeCC-CC---CC--CcccceeEEEEEEecC
Confidence 45778884321167889986655443332221 1 11 999999999999 42 12 3899999999994 56
Q ss_pred CcchHHHHHHHHH
Q psy1870 100 LPEDSEKQLEQFL 112 (264)
Q Consensus 100 ~pe~s~~~~~~~~ 112 (264)
.-++..+..+.++
T Consensus 103 ~~~dvm~~~e~lv 115 (269)
T cd00669 103 DYEDVIELTERLV 115 (269)
T ss_pred CHHHHHHHHHHHH
Confidence 4455555444444
No 65
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.86 E-value=0.00013 Score=69.64 Aligned_cols=98 Identities=7% Similarity=-0.022 Sum_probs=76.0
Q ss_pred CCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcC
Q psy1870 21 RSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTL 100 (264)
Q Consensus 21 ~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~ 100 (264)
..+||++.|..+++.+.|||.--.+++-+.+... ....|+|+|.++++||.+.+ ..| |.|||.|...-.|-.
T Consensus 63 ~~~~y~f~D~~~g~~l~LRpD~T~~iaR~~a~~~--~~~~p~R~~Y~g~VfR~~~~----~~g--r~rEf~Q~GvEiiG~ 134 (392)
T PRK12421 63 KLQTFKLIDQLSGRLMGVRADITPQVARIDAHLL--NREGVARLCYAGSVLHTLPQ----GLF--GSRTPLQLGAELYGH 134 (392)
T ss_pred hhceEEEEcCCCCcEEEECCcCCHHHHHHHHhhc--CCCCceEEEEeeeEEEcCCC----cCC--CcCccceeceEEeCC
Confidence 3479999986226789999999999998776542 23679999999999999862 344 999999999998876
Q ss_pred cc-hHHHHHHHHHHHHHHHHHHhCCc-eEEE
Q psy1870 101 PE-DSEKQLEQFLQFEESLFGELGIH-TRTL 129 (264)
Q Consensus 101 pe-~s~~~~~~~~~~~~~i~~~Lglp-yr~v 129 (264)
+. .++ .+++....++++.||++ +.+.
T Consensus 135 ~~~~aD---aEvi~l~~e~l~~lgi~~~~l~ 162 (392)
T PRK12421 135 AGIEAD---LEIIRLMLGLLRNAGVPALHLD 162 (392)
T ss_pred CCchhH---HHHHHHHHHHHHHcCCCCeEEE
Confidence 54 333 35677788899999995 6653
No 66
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=97.58 E-value=0.00085 Score=61.47 Aligned_cols=97 Identities=20% Similarity=0.262 Sum_probs=76.7
Q ss_pred CceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCc
Q psy1870 22 SQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLP 101 (264)
Q Consensus 22 ~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~p 101 (264)
+++|++.|++ ++.++|+|---.+++.+++... . ...|.|++.++++||++..+ .| |.|||.|...-.+..+
T Consensus 52 ~~~~~~~D~~-G~~l~LR~D~T~~iaR~~a~~~-~-~~~~~r~~y~g~vfR~~~~~----~g--~~re~~Q~g~Eiig~~ 122 (311)
T PF13393_consen 52 DNMYRFLDRS-GRVLALRPDLTVPIARYVARNL-N-LPRPKRYYYIGPVFRYERPG----KG--RPREFYQCGFEIIGSS 122 (311)
T ss_dssp GCSEEEECTT-SSEEEE-SSSHHHHHHHHHHCC-G-SSSSEEEEEEEEEEEEETTT----TT--BESEEEEEEEEEESSS
T ss_pred hhhEEEEecC-CcEeccCCCCcHHHHHHHHHhc-C-cCCCceEEEEcceeeccccC----CC--CCceeEEEEEEEECCC
Confidence 3899999886 8999999999999998887753 2 67899999999999999632 22 8899999999999777
Q ss_pred chHHHHHHHHHHHHHHHHH-HhCC-ceEEE
Q psy1870 102 EDSEKQLEQFLQFEESLFG-ELGI-HTRTL 129 (264)
Q Consensus 102 e~s~~~~~~~~~~~~~i~~-~Lgl-pyr~v 129 (264)
.- .. =.+++....++++ .||+ ++.+.
T Consensus 123 ~~-~~-daEvi~l~~e~l~~~l~~~~~~i~ 150 (311)
T PF13393_consen 123 SL-EA-DAEVIKLADEILDRELGLENFTIR 150 (311)
T ss_dssp SH-HH-HHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred CH-HH-HHHHHHHHHHHHHhhcCCCCcEEE
Confidence 32 22 3467788889997 9999 46654
No 67
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.00048 Score=67.58 Aligned_cols=45 Identities=24% Similarity=0.471 Sum_probs=39.2
Q ss_pred eeEEecccccHhHHHHHHHHhccccCCceeccCCccccccceeeecCC
Q psy1870 183 AHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDT 230 (264)
Q Consensus 183 ~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~~~ 230 (264)
+-++.|+|+|++|+++++||+++|++| |.||..++||. ..+++.+
T Consensus 371 ~~~mg~ygigvsr~v~a~ieq~~d~~g-i~w~~a~apf~--~~iv~~n 415 (500)
T COG0442 371 PKTMGCYGIGVSRLVAALLEQIHDENG-IIWPKAIAPFD--VHIVPVN 415 (500)
T ss_pred ceEEEehhhhhhhHHHHHHHHhccccc-CccccccCcce--eEEEEcC
Confidence 345789999999999999999999998 99999999999 5555555
No 68
>KOG1936|consensus
Probab=97.08 E-value=0.00076 Score=64.41 Aligned_cols=101 Identities=22% Similarity=0.258 Sum_probs=73.0
Q ss_pred CCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHh-ccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEE
Q psy1870 14 KINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLM-NQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTK 92 (264)
Q Consensus 14 G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~-~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~ 92 (264)
|..-++ ...+|-++|++ ++-..||+.--+|++-+.+ |.+.| ++.|+|++.||++.+ +-++| |.|||.|
T Consensus 109 gKYGEd-skLiYdlkDQG-GEl~SLRYDLTVPfARylAmNki~s-----ikRy~iAkVyRRd~P--~mtrG--R~REFYQ 177 (518)
T KOG1936|consen 109 GKYGED-SKLIYDLKDQG-GELCSLRYDLTVPFARYLAMNKITS-----IKRYHIAKVYRRDQP--AMTRG--RYREFYQ 177 (518)
T ss_pred hhcccc-cceeEehhhcC-CcEEEeecccccHHHHHHHHccccc-----ceeeeEEEEEeccCc--hhhch--hhhhhhc
Confidence 444445 57999999998 8889999999999995544 44444 677999999999974 24677 8899999
Q ss_pred eeEEEEc--CcchHHHHHHHHHHHHHHHHHHhCC-ceEE
Q psy1870 93 IEMFGVT--LPEDSEKQLEQFLQFEESLFGELGI-HTRT 128 (264)
Q Consensus 93 ~E~~~f~--~pe~s~~~~~~~~~~~~~i~~~Lgl-pyr~ 128 (264)
-|+=+-- .|--.+ .+++++..++|+.||| +|.+
T Consensus 178 cDFDIAG~~d~M~pd---aE~lkiv~e~L~~l~Igd~~i 213 (518)
T KOG1936|consen 178 CDFDIAGQFDPMIPD---AECLKIVVEILSRLGIGDYGI 213 (518)
T ss_pred cCccccccCCCCCch---HHHHHHHHHHHhhcCccceEE
Confidence 8876543 221122 2456667788888888 4654
No 69
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=96.95 E-value=0.014 Score=53.67 Aligned_cols=142 Identities=14% Similarity=0.080 Sum_probs=84.1
Q ss_pred ceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcchHHHHHHHHHHH
Q psy1870 35 GWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQF 114 (264)
Q Consensus 35 ~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~s~~~~~~~~~~ 114 (264)
..+||++.-.++...++.... .|++++++|++||++... .+ ++.||.+.++.+...+ . .|..+...
T Consensus 128 ~~vLRtsl~p~ll~~l~~N~~----~pirlFEiGrVfr~d~~d--~~----~~pef~ql~gl~~~~~--~--~f~dLKg~ 193 (294)
T TIGR00468 128 RLLLRTHTTAVQLRTMEENEK----PPIRIFSPGRVFRNDTVD--AT----HLPEFHQVEGLVIDKN--V--SFTNLKGF 193 (294)
T ss_pred CcceecccHHHHHHHHHhcCC----CCceEEEecceEEcCCCC--Cc----cCChhhEEEEEEECCC--C--CHHHHHHH
Confidence 468888877766655543221 799999999999997521 11 1349999998855422 1 27788888
Q ss_pred HHHHHHHhCCc--eEEEEccCCCcCchhhcccceeeecCcccccceeEecCCccchhhcccceeecCCCceeEEeccccc
Q psy1870 115 EESLFGELGIH--TRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDGKFAHTLNGTACA 192 (264)
Q Consensus 115 ~~~i~~~Lglp--yr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~qa~rl~i~y~~~~~~ht~~gtg~~ 192 (264)
.+.+++.||+. ++. .++..-...-+.+.++ +++...+|.||+.|.-.-=-..+.++|.. . ......+++
T Consensus 194 le~ll~~l~~~~~~~~--~~~~~p~~~Ps~e~~i--~~~~g~~w~eiG~~G~vhP~Vl~~~gi~~---~--~~v~afel~ 264 (294)
T TIGR00468 194 LEEFLKKMFGETEIRF--RPSYFPFTEPSAEIDV--YCWEGKTWLEVLGAGMFRPEVLEPMGIDP---T--YPGFAWGIG 264 (294)
T ss_pred HHHHHHHhCCCcceee--ccCCCCCCCCCEEEEE--EEeCCCccEEEEEeccCcHHHHHHCCCCC---C--CeEEEEEee
Confidence 99999999986 343 2221111111223333 33222358898876532111245566642 1 123467788
Q ss_pred HhHHHHH
Q psy1870 193 IPRLLMA 199 (264)
Q Consensus 193 v~Rll~a 199 (264)
++|+...
T Consensus 265 lerl~m~ 271 (294)
T TIGR00468 265 IERLAML 271 (294)
T ss_pred HHHHHHH
Confidence 9998543
No 70
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.0011 Score=65.13 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=58.0
Q ss_pred EEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEE-EEcCcch
Q psy1870 25 YHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMF-GVTLPED 103 (264)
Q Consensus 25 y~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~-~f~~pe~ 103 (264)
|-|-.|-+..++|=-|-|.|-+=.+.+-.=+ =|||||.+|||+|..+ .+ |+=||+|+|+. +|++.++
T Consensus 179 fLVPSRv~~G~FYALPQSPQlfKQLLMvsGf------dRYyQIarCFRDEDlR-aD-----RQPEFTQiD~EmSF~~~ed 246 (585)
T COG0173 179 FLVPSRVHPGKFYALPQSPQLFKQLLMVAGF------DRYYQIARCFRDEDLR-AD-----RQPEFTQIDLEMSFVDEED 246 (585)
T ss_pred cccccccCCCceeecCCCHHHHHHHHHHhcc------cceeeeeeeecccccc-cc-----cCCcceeEeEEeecCCHHH
Confidence 4444443244688888888766655543222 2799999999999843 23 77899999998 5999999
Q ss_pred HHHHHHHHHHHHHH
Q psy1870 104 SEKQLEQFLQFEES 117 (264)
Q Consensus 104 s~~~~~~~~~~~~~ 117 (264)
..+..+.++.....
T Consensus 247 v~~~~E~l~~~vf~ 260 (585)
T COG0173 247 VMELIEKLLRYVFK 260 (585)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888865444
No 71
>KOG2411|consensus
Probab=96.50 E-value=0.0032 Score=61.12 Aligned_cols=74 Identities=24% Similarity=0.294 Sum_probs=54.3
Q ss_pred CceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEE-EEcCcchHHHHHHHHH
Q psy1870 34 NGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMF-GVTLPEDSEKQLEQFL 112 (264)
Q Consensus 34 ~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~-~f~~pe~s~~~~~~~~ 112 (264)
..+|--|-+.|.+-.|.+..-+ =+|||+.+|||+|.++ .+ |+=||+|+||. +|+..++.++..+.++
T Consensus 226 g~FYaLpQSPQQfKQlLMvsGi------drYyQiARCfRDEdlR-~D-----RQPEFTQvD~EMsF~~~~dim~liEdll 293 (628)
T KOG2411|consen 226 GKFYALPQSPQQFKQLLMVSGI------DRYYQIARCFRDEDLR-AD-----RQPEFTQVDMEMSFTDQEDIMKLIEDLL 293 (628)
T ss_pred CceeecCCCHHHHHHHHHHhch------hhHHhHHhhhcccccC-cc-----cCCcceeeeeEEeccCHHHHHHHHHHHH
Confidence 4567777777777665554333 2789999999999843 12 88899999997 5888888888888887
Q ss_pred HHHHHHH
Q psy1870 113 QFEESLF 119 (264)
Q Consensus 113 ~~~~~i~ 119 (264)
.......
T Consensus 294 ~~~ws~~ 300 (628)
T KOG2411|consen 294 RYVWSED 300 (628)
T ss_pred HHhchhh
Confidence 6655433
No 72
>PLN02788 phenylalanine-tRNA synthetase
Probab=96.43 E-value=0.047 Score=52.42 Aligned_cols=145 Identities=18% Similarity=0.236 Sum_probs=86.0
Q ss_pred CCceEEeecCCCCCceEEeC-CchHHHHHHHhccccCCCCCcceEEEecceeccCc-cCCccCCCceeeEEEEEeeEEEE
Q psy1870 21 RSQIYHLEPNYYGNGWCLSG-TAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADEKGVYRVHCFTKIEMFGV 98 (264)
Q Consensus 21 ~~~ly~i~~~~~~~~~~L~p-TaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~-s~g~~~~GL~R~reF~~~E~~~f 98 (264)
..+.|.|. +++.||- |+...+-.|.+. .| ++...|++||++. -. + ...+|+|+|....
T Consensus 119 ~~DTfy~~-----~~~lLRTHTSa~q~~~l~~~-------~~-~~~~~g~VyRrD~iD~---t----H~p~FhQ~EG~~v 178 (402)
T PLN02788 119 YNDTYYVD-----AQTVLRCHTSAHQAELLRAG-------HT-HFLVTGDVYRRDSIDA---T----HYPVFHQMEGVRV 178 (402)
T ss_pred ccceEEec-----CCccccCCCcHHHHHHHHhC-------CC-cEEEEeeEeecCCCCc---c----cCccceeEEEEEE
Confidence 45666664 3567776 455444444431 23 8999999999996 21 1 3468999999987
Q ss_pred cCcch--------HHHHHHHHHHHHHHHHHHh-CCc-eEEEEccCCCcCchhhcccceeeecCcccccceeEecCCccch
Q psy1870 99 TLPED--------SEKQLEQFLQFEESLFGEL-GIH-TRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDY 168 (264)
Q Consensus 99 ~~pe~--------s~~~~~~~~~~~~~i~~~L-glp-yr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~ 168 (264)
.++++ ..-.+..+....+.++..| |+. +|.. ++- ..+ -.-.+.+++++.+ .|.|+.. ||-.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~dLKg~Le~l~~~lfg~~~~r~~--~s~-fPf-t~Ps~e~dI~~~g--~WlEvlG---~G~v 249 (402)
T PLN02788 179 FSPEEWEASGLDGTDLAAEDLKKTLEGLARHLFGDVEMRWV--DAY-FPF-TNPSFELEIFFKG--EWLEVLG---CGVT 249 (402)
T ss_pred ecccccccccccccccCHHHHHHHHHHHHHHhcCCCceEEe--cCC-CCC-CCCCeEEEEEECC--EEEEEee---EEEE
Confidence 64421 1123667777778888877 773 4442 211 111 1223345566543 6999877 4433
Q ss_pred h---hcccceeecCCCceeEEecccccHhHHHHHH
Q psy1870 169 Q---ARRLNIRTEDGKFAHTLNGTACAIPRLLMAL 200 (264)
Q Consensus 169 q---a~rl~i~y~~~~~~ht~~gtg~~v~Rll~al 200 (264)
. .+.+++... +.-+.|++++|+....
T Consensus 250 hP~Vl~~~gi~~~------~g~AfglgLeRLaml~ 278 (402)
T PLN02788 250 EQEILKNNGRSDN------VAWAFGLGLERLAMVL 278 (402)
T ss_pred cHHHHHHcCCCCC------cEEEEEEeHHHHHHhh
Confidence 2 445665321 3346788999997655
No 73
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=96.17 E-value=0.0073 Score=57.08 Aligned_cols=127 Identities=17% Similarity=0.232 Sum_probs=65.1
Q ss_pred ccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCC-ceEEEEcc
Q psy1870 54 TLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGI-HTRTLNMG 132 (264)
Q Consensus 54 ~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lgl-pyr~v~~~ 132 (264)
++...++|++++.|-+|||.|.. .+..-||--|.-. +.....+ -+- +.=...++.++.++|+ .|+++ +
T Consensus 200 i~~r~~~PlklFSIDRCFRREQ~--ED~shLmtYhSAS---CVvvde~-vtv---D~GKaVAEglL~qfGFe~F~Fr--p 268 (536)
T COG2024 200 ILKREDPPLKLFSIDRCFRREQR--EDASHLMTYHSAS---CVVVDED-VTV---DDGKAVAEGLLRQFGFEKFRFR--P 268 (536)
T ss_pred HHhccCCCceeeehhHHhhhhhh--cchhhhhhhccce---EEEEcCc-ccc---cccHHHHHHHHHHhCccceeec--c
Confidence 45678999999999999999983 2334455544432 2222211 111 1112235788999999 47763 2
Q ss_pred CCCcCchhhccccee--eecCcc--------cccceeEecCCccchhhcccceeecCCCceeEEecccccHhHHHH
Q psy1870 133 ANELGAQAYKKYDVE--AWMPGR--------KHWGELSSCSDCTDYQARRLNIRTEDGKFAHTLNGTACAIPRLLM 198 (264)
Q Consensus 133 ~~dl~~~a~~~ydiE--~w~p~~--------~~~~Ev~s~s~~~D~qa~rl~i~y~~~~~~ht~~gtg~~v~Rll~ 198 (264)
..-+.-+-.-.-.-| ++-|.. .+|.||++.....--.....+|.|- .| .-|+|++|+-.
T Consensus 269 DEK~SKYYvP~TQTEVyAyHPkL~gs~~kysdgWiEiATFGlYSP~ALaeY~Id~p------VM-NLGlGVERlaM 337 (536)
T COG2024 269 DEKKSKYYVPGTQTEVYAYHPKLVGSIEKYSDGWIEIATFGLYSPIALAEYGIDYP------VM-NLGLGVERLAM 337 (536)
T ss_pred ccccccccCCCccceEEEecccccccccccCCCcEEEEeecccChHHHHHcCCCCc------ee-ecchhHHHHHH
Confidence 211110000000112 222322 3688888765332122233445332 34 46789999743
No 74
>PLN02903 aminoacyl-tRNA ligase
Probab=95.46 E-value=0.023 Score=57.62 Aligned_cols=46 Identities=26% Similarity=0.308 Sum_probs=35.4
Q ss_pred ceEEEecceeccCccCCccCCCceeeEEEEEeeEEE-EcCcchHHHHHHHHHH
Q psy1870 62 KQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG-VTLPEDSEKQLEQFLQ 113 (264)
Q Consensus 62 l~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~~pe~s~~~~~~~~~ 113 (264)
=++|||++|||+|.++ --|.-||+|.|++. |..-++.++..+.++.
T Consensus 273 ~RvFqIa~~FR~E~~~------t~RhpEFTqLE~E~sf~d~~dvm~~~E~li~ 319 (652)
T PLN02903 273 DRYYQIARCFRDEDLR------ADRQPEFTQLDMELAFTPLEDMLKLNEDLIR 319 (652)
T ss_pred CcEEEEehhhccCCCC------CCcccceeeeeeeecCCCHHHHHHHHHHHHH
Confidence 3789999999999843 12668999999994 7765677777776664
No 75
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=95.44 E-value=0.11 Score=48.35 Aligned_cols=81 Identities=17% Similarity=0.319 Sum_probs=52.6
Q ss_pred CCceEEeec----CCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEE
Q psy1870 21 RSQIYHLEP----NYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMF 96 (264)
Q Consensus 21 ~~~ly~i~~----~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~ 96 (264)
..+.|.+.. .. +.++||..+.+.-+=.+...- + =++||+++|||+|-+. +-..+-||+|.|.+
T Consensus 57 ~~~~F~v~~~~~~~~-~~~~~L~~Spql~~k~ll~~g------~-~~vf~i~~~FR~E~~~-----~~rHl~EFtmLE~e 123 (335)
T PF00152_consen 57 GAEPFSVDSEPGKYF-GEPAYLTQSPQLYLKRLLAAG------L-ERVFEIGPCFRNEESR-----TRRHLPEFTMLEWE 123 (335)
T ss_dssp SSCSEEEEESTTEET-TEEEEE-SSSHHHHHHHHHTT------H-SEEEEEEEEE-BSSSC-----BTTBSSEEEEEEEE
T ss_pred cccccccccchhhhc-ccceecCcChHHHHhhhcccc------c-hhhhheecceeccCcc-----cccchhhhhhhhhc
Confidence 568899872 22 578999998886554333321 1 3689999999999752 22345699999999
Q ss_pred E-EcCcchHHHHHHHHHHH
Q psy1870 97 G-VTLPEDSEKQLEQFLQF 114 (264)
Q Consensus 97 ~-f~~pe~s~~~~~~~~~~ 114 (264)
. |.+.++..+..+.++..
T Consensus 124 ~a~~~~~~lm~~~e~li~~ 142 (335)
T PF00152_consen 124 MAFADYDDLMDLIEELIKY 142 (335)
T ss_dssp EETSSHHHHHHHHHHHHHH
T ss_pred cccCcHHHhHHHHHHHHHH
Confidence 7 55656655555554443
No 76
>PRK09350 poxB regulator PoxA; Provisional
Probab=95.35 E-value=0.024 Score=52.47 Aligned_cols=67 Identities=21% Similarity=0.226 Sum_probs=43.7
Q ss_pred CCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEE-EcCcchHHHHHHHH
Q psy1870 33 GNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG-VTLPEDSEKQLEQF 111 (264)
Q Consensus 33 ~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~~pe~s~~~~~~~ 111 (264)
++.++|+-..+..+..++..- + -++|++++|||+|.+. --+..||+|.|.+. +.+-++..+..+.+
T Consensus 57 ~~~~~L~~SPe~~~kr~la~~------~-~rvf~i~~~FR~e~~~------~~H~~EFt~lE~y~~~~d~~dlm~~~E~l 123 (306)
T PRK09350 57 GKTLWLMTSPEYHMKRLLAAG------S-GPIFQICKSFRNEEAG------RYHNPEFTMLEWYRPHYDMYRLMNEVDDL 123 (306)
T ss_pred CcceEEecCHHHHHHHHhhcc------c-cceEEecceeecCCCC------CCCCcHHHhhhhhhhCCCHHHHHHHHHHH
Confidence 677899855555544333221 2 2999999999999741 24788999999995 44334454444444
Q ss_pred H
Q psy1870 112 L 112 (264)
Q Consensus 112 ~ 112 (264)
+
T Consensus 124 i 124 (306)
T PRK09350 124 L 124 (306)
T ss_pred H
Confidence 4
No 77
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=95.31 E-value=0.024 Score=56.89 Aligned_cols=47 Identities=23% Similarity=0.366 Sum_probs=35.9
Q ss_pred ceEEEecceeccCccCCccCCCceeeEEEEEeeEE-EEcCcchHHHHHHHHHHH
Q psy1870 62 KQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMF-GVTLPEDSEKQLEQFLQF 114 (264)
Q Consensus 62 l~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~-~f~~pe~s~~~~~~~~~~ 114 (264)
=++||+++|||+|.++ + -|.-||+|.|++ +|.+-++.++..+.++..
T Consensus 207 ervfqI~~~FR~E~~~---t---~r~pEFT~le~E~af~d~~dvm~~~E~li~~ 254 (583)
T TIGR00459 207 DRYYQIARCFRDEDLR---A---DRQPEFTQIDMEMSFMTQEDVMELIEKLVSH 254 (583)
T ss_pred CcEEEEcceeeCCCCC---C---CCCcccCcceeeecCCCHHHHHHHHHHHHHH
Confidence 3789999999999853 1 166899999999 477656777777776643
No 78
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=95.05 E-value=0.02 Score=58.62 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=36.0
Q ss_pred eEEEecceeccCccCCccCCCceeeEEEEEeeEE-EEcCcchHHHHHHHHHHH
Q psy1870 63 QIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMF-GVTLPEDSEKQLEQFLQF 114 (264)
Q Consensus 63 ~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~-~f~~pe~s~~~~~~~~~~ 114 (264)
++|||++|||+|.++ . -|.-||+|.|++ +|.+-++.++..+.++..
T Consensus 226 rvfqI~~~FR~E~~~--t----~r~pEFT~LE~E~af~d~~dvm~l~E~li~~ 272 (706)
T PRK12820 226 RYFQLARCFRDEDLR--P----NRQPEFTQLDIEASFIDEEFIFELIEELTAR 272 (706)
T ss_pred cEEEEechhcCCCCC--C----CcCccccccceeeccCCHHHHHHHHHHHHHH
Confidence 789999999999853 1 266899999999 587667777777776653
No 79
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=94.71 E-value=0.034 Score=55.96 Aligned_cols=46 Identities=22% Similarity=0.393 Sum_probs=34.6
Q ss_pred ceEEEecceeccCccCCccCCCceeeEEEEEeeEE-EEcCcchHHHHHHHHHH
Q psy1870 62 KQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMF-GVTLPEDSEKQLEQFLQ 113 (264)
Q Consensus 62 l~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~-~f~~pe~s~~~~~~~~~ 113 (264)
=++||+++|||+|.+.+ . |.-||+|.|++ +|.+-++.++..+.++.
T Consensus 210 ~rvfqi~~~FR~E~~~~--~----r~~EFt~le~e~af~~~~dvm~~~E~li~ 256 (588)
T PRK00476 210 DRYYQIARCFRDEDLRA--D----RQPEFTQIDIEMSFVTQEDVMALMEGLIR 256 (588)
T ss_pred CceEEEeceeecCCCCC--C----cCcccccceeeecCCCHHHHHHHHHHHHH
Confidence 37899999999998531 1 44499999999 47766677776666664
No 80
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=94.26 E-value=1.5 Score=42.81 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=36.1
Q ss_pred CCceEEeecCCCCCceEEeC-CchHHHHHHHhccccCCCCCcce--EEEecceeccCc-cCCccCCCceeeEEEEEeeEE
Q psy1870 21 RSQIYHLEPNYYGNGWCLSG-TAEMGIARYLMNQTLPESQLPKQ--IAAMSKCYRAEI-SVVADEKGVYRVHCFTKIEMF 96 (264)
Q Consensus 21 ~~~ly~i~~~~~~~~~~L~p-TaE~~i~~l~~~~~~syr~LPl~--l~q~s~~fR~E~-s~g~~~~GL~R~reF~~~E~~ 96 (264)
..+.|.|. ++.+||. ||...+-.| ....-. .-|++ +...|.+||++. -. + ....|+|+|..
T Consensus 98 ~~DT~Yi~-----~~~lLRTHTSa~q~~~~-~~~~~~--~~~~~~~~i~~G~VYRrD~iDa---t----H~p~FHQ~EG~ 162 (460)
T TIGR00469 98 KSDCYYIN-----EQHLLRAHTSAHELECF-QGGLDD--SDNIKSGFLISADVYRRDEIDK---T----HYPVFHQADGA 162 (460)
T ss_pred cccceEec-----CCceeCCCCcHHHHHHH-Hhcccc--CCCcceeeEeecceeeCCCCcc---c----cCccceeeEEE
Confidence 34555553 4567776 444444444 332111 24888 888899999885 21 0 23578888864
Q ss_pred EE
Q psy1870 97 GV 98 (264)
Q Consensus 97 ~f 98 (264)
..
T Consensus 163 ~v 164 (460)
T TIGR00469 163 AI 164 (460)
T ss_pred EE
Confidence 43
No 81
>PLN02850 aspartate-tRNA ligase
Probab=93.80 E-value=0.15 Score=50.71 Aligned_cols=78 Identities=14% Similarity=0.317 Sum_probs=47.5
Q ss_pred CCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEE-EEc
Q psy1870 21 RSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMF-GVT 99 (264)
Q Consensus 21 ~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~-~f~ 99 (264)
+.+.|.+.-. +..+||+-..+.-.=.+.. + .+ =++|+|++|||+|-|.+ .+ .+-||+|.|++ .|.
T Consensus 260 ga~~F~v~yf--~~~~~L~qSpql~kq~li~----~--g~-~rVfeIgp~FRaE~s~t-~R----Hl~EFt~Le~Em~~~ 325 (530)
T PLN02850 260 GSAVFRLDYK--GQPACLAQSPQLHKQMAIC----G--DF-RRVFEIGPVFRAEDSFT-HR----HLCEFTGLDLEMEIK 325 (530)
T ss_pred ccceeeeccC--CcceecCCCHHHHHHHHHH----h--cC-CceEEEecccccCCCCC-Cc----cchhhccchhhhhhh
Confidence 3467887533 5778887544422111111 1 12 28999999999998531 11 35699999999 676
Q ss_pred Cc-chHHHHHHHHH
Q psy1870 100 LP-EDSEKQLEQFL 112 (264)
Q Consensus 100 ~p-e~s~~~~~~~~ 112 (264)
.. ++..+..+.++
T Consensus 326 ~~y~evm~~~E~ll 339 (530)
T PLN02850 326 EHYSEVLDVVDELF 339 (530)
T ss_pred cCHHHHHHHHHHHH
Confidence 54 45554444444
No 82
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=93.75 E-value=0.41 Score=47.36 Aligned_cols=149 Identities=18% Similarity=0.244 Sum_probs=82.4
Q ss_pred ceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcchHHHHHHHHHHH
Q psy1870 35 GWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQF 114 (264)
Q Consensus 35 ~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~s~~~~~~~~~~ 114 (264)
.-+||++---++....+ ..++.+..|++++++|++||.+.. .+.. ++..+..... +..+++.. |..+...
T Consensus 183 ~svLRtSLlPGLL~tLs-~Nl~Rg~~piRLFEIGRVFr~d~~--eE~t---~La~llsGs~--W~~~e~vD--FfDlKGi 252 (529)
T PRK06253 183 RLTLRSHMTSGWFITLS-SLLEKRPLPIKLFSIDRCFRREQR--EDAS---RLMTYHSASC--VIADEDVT--VDDGKAV 252 (529)
T ss_pred cCccccchHHHHHHHHH-HHHhCCCCCEEEEEEeeEEecCCc--cchh---heeEEEEccc--cccCCCCC--HHHHHHH
Confidence 45777776666553332 234567899999999999988531 0111 2222222211 12233322 7788888
Q ss_pred HHHHHHHhCCc-eEEEEccCCCcCchhhcccceeeecCcccccceeEecCCccchhhcccceeecCCCceeEEecccccH
Q psy1870 115 EESLFGELGIH-TRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDGKFAHTLNGTACAI 193 (264)
Q Consensus 115 ~~~i~~~Lglp-yr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~qa~rl~i~y~~~~~~ht~~gtg~~v 193 (264)
.+.++..||+. +++.......-...-....++.+|.|..++|.+|+.+.-..=-..+.++|.+. +....+.+
T Consensus 253 LE~LL~~LGI~~i~f~pse~~~p~fHPGRSAeI~v~hp~~dGwkeIG~fGELHP~VLk~fDI~~p-------V~aFELDL 325 (529)
T PRK06253 253 AEGLLSQFGFTKFKFRPDEKRSKYYTPDTQTEVYAYHPKLDGWVEVATFGIYSPVALAEYGIDVP-------VMNLGLGV 325 (529)
T ss_pred HHHHHHHcCCCeEEEeecccCCCCcCCCeEEEEEEEeecCCCCEEEEEEEEECHHHHHHcCCCCc-------eEEEEEeH
Confidence 99999999997 55522100111111223446666767766666776544221112456666531 23566789
Q ss_pred hHHHHHH
Q psy1870 194 PRLLMAL 200 (264)
Q Consensus 194 ~Rll~al 200 (264)
+|++...
T Consensus 326 ErL~~i~ 332 (529)
T PRK06253 326 ERLAMIL 332 (529)
T ss_pred HHHHhhh
Confidence 9986544
No 83
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=93.69 E-value=0.12 Score=49.39 Aligned_cols=97 Identities=16% Similarity=0.220 Sum_probs=70.2
Q ss_pred CCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcC
Q psy1870 21 RSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTL 100 (264)
Q Consensus 21 ~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~ 100 (264)
..++|++.|.. ++.++|||.--.+++-++.....+ .|.|++-.|++||...+ ..| |..||+|.=+..+-.
T Consensus 59 ~~~~f~l~d~~-g~~l~LRpD~T~pVaR~~~~~~~~---~P~Rl~Y~G~Vfr~~~~----~~g--~~~Ef~QaGiEllG~ 128 (390)
T COG3705 59 RRRLFKLEDET-GGRLGLRPDFTIPVARIHATLLAG---TPLRLSYAGKVFRAREG----RHG--RRAEFLQAGIELLGD 128 (390)
T ss_pred hhhheEEecCC-CCeEEecccccHHHHHHHHHhcCC---CCceeeecchhhhcchh----ccC--cccchhhhhhHHhCC
Confidence 46899999988 788999999999999888764444 99999999999999731 122 556999876555544
Q ss_pred cc-hHHHHHHHHHHHHHHHHHHhCCc-eEEEE
Q psy1870 101 PE-DSEKQLEQFLQFEESLFGELGIH-TRTLN 130 (264)
Q Consensus 101 pe-~s~~~~~~~~~~~~~i~~~Lglp-yr~v~ 130 (264)
+. .|+. +++......++.+|++ +.+..
T Consensus 129 ~~~~ADa---Evi~la~~~L~~~gl~~~~l~L 157 (390)
T COG3705 129 DSAAADA---EVIALALAALKALGLADLKLEL 157 (390)
T ss_pred CcchhhH---HHHHHHHHHHHHcCCcCeEEEe
Confidence 32 3442 3455566778888874 66543
No 84
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=93.67 E-value=0.097 Score=51.61 Aligned_cols=78 Identities=14% Similarity=0.169 Sum_probs=48.3
Q ss_pred ceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEE-EcCc
Q psy1870 23 QIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG-VTLP 101 (264)
Q Consensus 23 ~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~~p 101 (264)
+.|.+..+.-+.++||+-..|.-+=.+.. +- + =++|++++|||+|-+. + -++-||+|.|+|. |.+-
T Consensus 209 ~pF~t~~~~~~~~~yL~~Spql~lk~l~v----~g--~-~rVfei~~~FR~E~~~---~---rH~pEFt~lE~e~a~~d~ 275 (491)
T PRK00484 209 RPFITHHNALDIDLYLRIAPELYLKRLIV----GG--F-ERVYEIGRNFRNEGID---T---RHNPEFTMLEFYQAYADY 275 (491)
T ss_pred eeeeeccccCCCceEeccCHHHHHHHHHh----cc--C-CcEEEEecceecCCCC---C---CcCCceEEEEEEEecCCH
Confidence 56654322115678887544432222221 11 1 4789999999999842 1 4778999999984 7654
Q ss_pred chHHHHHHHHHH
Q psy1870 102 EDSEKQLEQFLQ 113 (264)
Q Consensus 102 e~s~~~~~~~~~ 113 (264)
++.++..+.++.
T Consensus 276 ~d~m~~~E~li~ 287 (491)
T PRK00484 276 NDMMDLTEELIR 287 (491)
T ss_pred HHHHHHHHHHHH
Confidence 666666666654
No 85
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=93.54 E-value=0.1 Score=48.59 Aligned_cols=76 Identities=13% Similarity=0.164 Sum_probs=47.0
Q ss_pred CceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEE-Ec-
Q psy1870 22 SQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG-VT- 99 (264)
Q Consensus 22 ~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~- 99 (264)
.+.|.+.-- +.++||+-+.|-.+=.+.. + + =++|++++|||+|-+. +--.+.||+|.|.+. |.
T Consensus 60 ~~~f~~~~~--~~~~yL~~Spql~lk~l~~----~---~-~~vf~i~~~FR~E~~~-----~~rHl~EFtmlE~e~~~~~ 124 (322)
T cd00776 60 AELFKVSYF--GKPAYLAQSPQLYKEMLIA----A---L-ERVYEIGPVFRAEKSN-----TRRHLSEFWMLEAEMAFIE 124 (322)
T ss_pred CCccccccC--CCcceecCCHHHHHHHHHH----h---h-hhhEEeccccccCCCC-----cCCCcceeeccceeeeccC
Confidence 345655322 5788998665543322222 1 1 3679999999999742 123678999999995 55
Q ss_pred CcchHHHHHHHHH
Q psy1870 100 LPEDSEKQLEQFL 112 (264)
Q Consensus 100 ~pe~s~~~~~~~~ 112 (264)
.-++..+..+.++
T Consensus 125 ~~~dlm~~~e~ll 137 (322)
T cd00776 125 DYNEVMDLIEELI 137 (322)
T ss_pred CHHHHHHHHHHHH
Confidence 3355555554444
No 86
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=93.16 E-value=0.063 Score=43.39 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=22.1
Q ss_pred HHhccccCCceeccCCccccccceeeecC
Q psy1870 201 VETHQNQDGTVNIPECLQPFMFNKRIIGD 229 (264)
Q Consensus 201 LE~~~~~~G~i~lP~~LaP~~~~~~~i~~ 229 (264)
+|++.++.| |+||+.||||+ +.+++.
T Consensus 10 iE~~~d~~G-l~~P~~iAP~q--V~Iipi 35 (128)
T cd02426 10 RKKGRQRQV-LKLHPCLAPYK--VAIDCG 35 (128)
T ss_pred hhcCCCCcE-EECCCCCCCeE--EEEEec
Confidence 488888888 99999999999 666654
No 87
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=93.14 E-value=0.14 Score=47.81 Aligned_cols=77 Identities=14% Similarity=0.167 Sum_probs=48.1
Q ss_pred ceEEee-cCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEE-EcC
Q psy1870 23 QIYHLE-PNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG-VTL 100 (264)
Q Consensus 23 ~ly~i~-~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~~ 100 (264)
+.|.+. +.. +...||.-..+..+=.+.. +. + =++||+++|||+|.++ -.++-||+|.|.+. |.+
T Consensus 45 ~~f~~~~~~~-~~~~yL~~Spql~~k~ll~----~g--~-~~vf~i~~~FR~E~~~------~rHl~EFt~le~e~~~~~ 110 (329)
T cd00775 45 RPFITHHNAL-DMDLYLRIAPELYLKRLIV----GG--F-ERVYEIGRNFRNEGID------LTHNPEFTMIEFYEAYAD 110 (329)
T ss_pred eeEEeccCCC-CcceeeccCHHHHHHHHHh----cC--C-CcEEEEeccccCCCCC------CCCCCceEEEEEeeecCC
Confidence 566553 222 6778887555533222221 11 2 5789999999999842 24678999999985 554
Q ss_pred cchHHHHHHHHHH
Q psy1870 101 PEDSEKQLEQFLQ 113 (264)
Q Consensus 101 pe~s~~~~~~~~~ 113 (264)
-++..+..+.++.
T Consensus 111 ~~~~m~~~e~li~ 123 (329)
T cd00775 111 YNDMMDLTEDLFS 123 (329)
T ss_pred HHHHHHHHHHHHH
Confidence 4566655555554
No 88
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=92.97 E-value=0.14 Score=50.68 Aligned_cols=68 Identities=16% Similarity=0.189 Sum_probs=45.0
Q ss_pred CCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEE-EcCcchHHHHHHHH
Q psy1870 33 GNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG-VTLPEDSEKQLEQF 111 (264)
Q Consensus 33 ~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~~pe~s~~~~~~~ 111 (264)
+.++||+=..|..+=.+.. +- + =++|+++++||+|-+ +--+.-||+|.|+|. |..-++.++..+.+
T Consensus 231 ~~~~yL~~SpELylKrliv----gG--~-~rVfeIg~~FRnE~~------~~rH~pEFTmlE~y~a~~d~~d~m~l~E~l 297 (505)
T PRK12445 231 DLDMYLRIAPELYLKRLVV----GG--F-ERVFEINRNFRNEGI------SVRHNPEFTMMELYMAYADYHDLIELTESL 297 (505)
T ss_pred CcceeeecCHHHHHHHHHh----cc--C-CcEEEEehhccCCCC------CCCcCcccceeeeeeecCCHHHHHHHHHHH
Confidence 5678887666543322221 11 1 378999999999973 124677999999996 66546666666666
Q ss_pred HH
Q psy1870 112 LQ 113 (264)
Q Consensus 112 ~~ 113 (264)
+.
T Consensus 298 i~ 299 (505)
T PRK12445 298 FR 299 (505)
T ss_pred HH
Confidence 54
No 89
>PLN02502 lysyl-tRNA synthetase
Probab=92.93 E-value=0.095 Score=52.38 Aligned_cols=68 Identities=15% Similarity=0.198 Sum_probs=46.3
Q ss_pred CCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEE-EEcCcchHHHHHHHH
Q psy1870 33 GNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMF-GVTLPEDSEKQLEQF 111 (264)
Q Consensus 33 ~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~-~f~~pe~s~~~~~~~ 111 (264)
+.++||+=..|.-+=.++.. . + =++|+++++||+|-+. + .+.-||+|.|.| .|..-++.++..+.+
T Consensus 276 ~~~~yL~~Spel~lK~L~v~---g---~-~rVfeIg~~FRnE~~~---~---rH~pEFtmlE~y~a~~d~~dlm~~~E~l 342 (553)
T PLN02502 276 NMDLYLRIATELHLKRLVVG---G---F-ERVYEIGRQFRNEGIS---T---RHNPEFTTCEFYQAYADYNDMMELTEEM 342 (553)
T ss_pred CcceeeecCHHHHHHHHHHh---c---c-CCEEEEcCeeeCCCCC---C---ccccceeehhhhhhcCCHHHHHHHHHHH
Confidence 56789987766533332221 1 1 3789999999999742 1 577899999998 476556666666665
Q ss_pred HH
Q psy1870 112 LQ 113 (264)
Q Consensus 112 ~~ 113 (264)
+.
T Consensus 343 i~ 344 (553)
T PLN02502 343 VS 344 (553)
T ss_pred HH
Confidence 54
No 90
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=92.89 E-value=0.15 Score=51.93 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=49.2
Q ss_pred CceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEE-EcC
Q psy1870 22 SQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG-VTL 100 (264)
Q Consensus 22 ~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~~ 100 (264)
...|.+..+..+.++||+=..|.-+=.+.. +- + =++|+++++||+|-+. + -+.-||+|.|.|. |.+
T Consensus 269 a~pF~t~~n~~~~~~yL~~SPELylKrLiv----gG--~-erVyeIg~~FRnE~~~---~---rH~pEFTmlE~y~a~~d 335 (659)
T PTZ00385 269 AKSFVTHHNANAMDLFLRVAPELHLKQCIV----GG--M-ERIYEIGKVFRNEDAD---R---SHNPEFTSCEFYAAYHT 335 (659)
T ss_pred ccceEeecccCCCCEEecCChHHHHHHHhh----cc--c-CCEEEEeceecCCCCC---C---CccccccceeeeeecCC
Confidence 355655422115678887666633322221 11 1 4789999999999742 1 3677999999995 554
Q ss_pred cchHHHHHHHHHH
Q psy1870 101 PEDSEKQLEQFLQ 113 (264)
Q Consensus 101 pe~s~~~~~~~~~ 113 (264)
-++.++..++++.
T Consensus 336 ~~d~m~l~E~li~ 348 (659)
T PTZ00385 336 YEDLMPMTEDIFR 348 (659)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666665554
No 91
>PRK06462 asparagine synthetase A; Reviewed
Probab=92.49 E-value=0.15 Score=47.85 Aligned_cols=69 Identities=16% Similarity=0.160 Sum_probs=42.9
Q ss_pred CCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEE-EcCcchHHHHHHHH
Q psy1870 33 GNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG-VTLPEDSEKQLEQF 111 (264)
Q Consensus 33 ~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~~pe~s~~~~~~~ 111 (264)
+.++||+...+-- -.+. +.- + =++|+|++|||+|.++ +-+=-.+-||+|.|.+. |..-++..+..+.+
T Consensus 82 ~~~~yL~~Spql~-k~ll----~~g--~-~rVfeI~p~FR~E~~~---~~~~rHl~EFtmlE~e~~~~d~~dlm~~~e~l 150 (335)
T PRK06462 82 GVEYYLADSMILH-KQLA----LRM--L-GKIFYLSPNFRLEPVD---KDTGRHLYEFTQLDIEIEGADLDEVMDLIEDL 150 (335)
T ss_pred CCceeeccCHHHH-HHHH----Hhh--c-CcEEEEeccccCCCCC---CCCCCCCCchheeeehhhcCCHHHHHHHHHHH
Confidence 5778997766532 2222 111 2 4789999999999842 11123667999999994 65445555544444
Q ss_pred H
Q psy1870 112 L 112 (264)
Q Consensus 112 ~ 112 (264)
+
T Consensus 151 v 151 (335)
T PRK06462 151 I 151 (335)
T ss_pred H
Confidence 4
No 92
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=92.47 E-value=0.18 Score=49.18 Aligned_cols=78 Identities=18% Similarity=0.172 Sum_probs=48.6
Q ss_pred CCceEEeec--------CCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEE
Q psy1870 21 RSQIYHLEP--------NYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTK 92 (264)
Q Consensus 21 ~~~ly~i~~--------~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~ 92 (264)
..+.|.+.. -. +.++||.-..+.-+ .++. + .+ =++||+++|||+|.+.+ =-.+-||+|
T Consensus 168 ~~~~F~v~~~~~~~~~~~~-~~~~~L~~Spql~l-q~l~----~--g~-~rVf~i~~~FR~E~~~t-----~rHl~EFt~ 233 (450)
T PRK03932 168 AGELFRVTTLDLDFSKDFF-GKEAYLTVSGQLYA-EAYA----M--AL-GKVYTFGPTFRAENSNT-----RRHLAEFWM 233 (450)
T ss_pred CCCceEeeccccccccccc-CCCcccccCHHHHH-HHHH----h--cc-CCeEEeeeccccCCCCC-----ccccccccc
Confidence 456787742 11 56788877665433 3322 1 23 47899999999998521 123469999
Q ss_pred eeEEE-EcCcchHHHHHHHHH
Q psy1870 93 IEMFG-VTLPEDSEKQLEQFL 112 (264)
Q Consensus 93 ~E~~~-f~~pe~s~~~~~~~~ 112 (264)
.|++. |..-++.++..+.++
T Consensus 234 lE~e~~~~~~~~~m~~~e~li 254 (450)
T PRK03932 234 IEPEMAFADLEDNMDLAEEML 254 (450)
T ss_pred cceEEeccCHHHHHHHHHHHH
Confidence 99995 665566555544444
No 93
>KOG0555|consensus
Probab=92.39 E-value=0.12 Score=49.39 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=29.9
Q ss_pred eEEEecceeccCccCCccCCCceeeEEEEEeeEEE-EcCcchHHHHHH
Q psy1870 63 QIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG-VTLPEDSEKQLE 109 (264)
Q Consensus 63 ~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~~pe~s~~~~~ 109 (264)
..|.|+..||.|.|+ .++ .+-||+.+|+.. |.+-++..+.++
T Consensus 310 dvy~I~~SyRAEkSr--TRR---HLsEytHVEaE~afltfd~ll~~iE 352 (545)
T KOG0555|consen 310 DVYCIQQSYRAEKSR--TRR---HLSEYTHVEAECAFLTFDDLLDRIE 352 (545)
T ss_pred ceeEecHhhhhhhhh--hhh---hhhhheeeeeecccccHHHHHHHHH
Confidence 468999999999973 333 357999999986 666565444333
No 94
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=92.38 E-value=0.2 Score=50.34 Aligned_cols=46 Identities=20% Similarity=0.125 Sum_probs=32.2
Q ss_pred ceEEEecceeccCccCCccCCCceeeEEEEEeeEEE-EcCcchHHHHHHHHH
Q psy1870 62 KQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG-VTLPEDSEKQLEQFL 112 (264)
Q Consensus 62 l~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~~pe~s~~~~~~~~ 112 (264)
=++|++++|||+|.+.. . -.+-||+|.|++. |..-++.++..+.++
T Consensus 344 ~rVf~i~p~FRaE~s~t-~----RHL~EFt~lE~E~af~d~~d~m~~~E~li 390 (586)
T PTZ00425 344 GDVYTFGPTFRAENSHT-S----RHLAEFWMIEPEIAFADLYDNMELAESYI 390 (586)
T ss_pred CCEEEEeceEeCCCCCC-C----CCCcccceEEEEEecCCHHHHHHHHHHHH
Confidence 37899999999998631 1 1346999999994 775566555544444
No 95
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=92.35 E-value=0.15 Score=49.40 Aligned_cols=78 Identities=15% Similarity=0.223 Sum_probs=47.5
Q ss_pred CCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEE-EEc
Q psy1870 21 RSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMF-GVT 99 (264)
Q Consensus 21 ~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~-~f~ 99 (264)
..+.|.+.-- +..+||+-..+.-.=.+.. + .+ =++||+++|||+|.+. +. -..-||+|.|++ +|.
T Consensus 171 ~~~~f~~~~~--~~~~~L~~Spql~~q~l~~----~--g~-~rVf~i~~~FR~E~~~---t~--rHl~EFt~lE~e~a~~ 236 (437)
T PRK05159 171 GAELFPIDYF--EKEAYLAQSPQLYKQMMVG----A--GF-ERVFEIGPVFRAEEHN---TS--RHLNEYTSIDVEMGFI 236 (437)
T ss_pred CcceEeEEec--CCceEecCCHHHHHHHHHh----c--CC-CcEEEEeceeeCCCCC---Cc--ccchhhheeeeeeeec
Confidence 4457776432 5778886665532222221 1 12 3789999999999842 11 134599999999 477
Q ss_pred C-cchHHHHHHHHH
Q psy1870 100 L-PEDSEKQLEQFL 112 (264)
Q Consensus 100 ~-pe~s~~~~~~~~ 112 (264)
. -++.++..+.++
T Consensus 237 ~~~~~lm~~~e~lv 250 (437)
T PRK05159 237 DDHEDVMDLLENLL 250 (437)
T ss_pred ccHHHHHHHHHHHH
Confidence 6 456555544444
No 96
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=92.17 E-value=0.24 Score=49.88 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=46.0
Q ss_pred CCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEE-EcCcchHHHHHHHH
Q psy1870 33 GNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG-VTLPEDSEKQLEQF 111 (264)
Q Consensus 33 ~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~~pe~s~~~~~~~ 111 (264)
+.++||+-..|-.+=.+... - + =++|++|++||+|-+. + ...-||+|.|.|. |..-++.++..+.+
T Consensus 300 d~~lYLriSpEL~lKrLlvg----G--~-~rVfeIgp~FRnE~~~---~---rHnpEFTmlE~y~ay~dy~dlM~l~E~L 366 (585)
T PTZ00417 300 DLDLYLRIATELPLKMLIVG----G--I-DKVYEIGKVFRNEGID---N---THNPEFTSCEFYWAYADFYDLIKWSEDF 366 (585)
T ss_pred CcceEEeecHHHHHHHHHHh----C--C-CCEEEEcccccCCCCC---C---CccceeeeeeeeeecCCHHHHHHHHHHH
Confidence 56789987777544333321 1 1 3789999999999742 1 4566999999995 66446666666665
Q ss_pred HH
Q psy1870 112 LQ 113 (264)
Q Consensus 112 ~~ 113 (264)
+.
T Consensus 367 i~ 368 (585)
T PTZ00417 367 FS 368 (585)
T ss_pred HH
Confidence 54
No 97
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=91.99 E-value=0.22 Score=48.20 Aligned_cols=78 Identities=12% Similarity=0.146 Sum_probs=47.9
Q ss_pred CCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEE-Ec
Q psy1870 21 RSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG-VT 99 (264)
Q Consensus 21 ~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~ 99 (264)
..+.|.++-- +.++||+-..+.-.=.+.. + .+ =++|++++|||+|-+. +. -.+-||+|.|.+. |.
T Consensus 168 ~~~~f~v~~~--~~~~yL~~Spql~~q~li~----~--g~-~rVf~i~~~FR~E~~~---t~--rHl~EFt~lE~e~a~~ 233 (428)
T TIGR00458 168 GTELFPITYF--EREAFLGQSPQLYKQQLMA----A--GF-ERVYEIGPIFRAEEHN---TH--RHLNEATSIDIEMAFE 233 (428)
T ss_pred CcceeeeEec--CCcEEECcCHHHHHHHHHh----c--cc-CcEEEEecccccCCCC---Cc--cchheeeEeeeeeccC
Confidence 4567776432 5778886554432212221 1 12 3789999999999842 11 1345999999995 66
Q ss_pred CcchHHHHHHHHH
Q psy1870 100 LPEDSEKQLEQFL 112 (264)
Q Consensus 100 ~pe~s~~~~~~~~ 112 (264)
+-++.++..++++
T Consensus 234 ~~~dlm~~~e~li 246 (428)
T TIGR00458 234 DHHDVMDILEELV 246 (428)
T ss_pred CHHHHHHHHHHHH
Confidence 6566665555544
No 98
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=91.68 E-value=0.28 Score=44.85 Aligned_cols=46 Identities=24% Similarity=0.329 Sum_probs=33.1
Q ss_pred ceEEEecceeccCccCCccCCCceeeEEEEEeeEEE-EcCcchHHHHHHHHHH
Q psy1870 62 KQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG-VTLPEDSEKQLEQFLQ 113 (264)
Q Consensus 62 l~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~~pe~s~~~~~~~~~ 113 (264)
=++|+++++||+|.+. .+ |-.||+|.|.+. |.+-++..+..+.++.
T Consensus 70 ~~v~~i~~~fR~e~~~----~~--r~~Ef~~~e~e~~~~~~~dlm~~~e~li~ 116 (280)
T cd00777 70 DRYFQIARCFRDEDLR----AD--RQPEFTQIDIEMSFVDQEDIMSLIEGLLK 116 (280)
T ss_pred CcEEEeccceeCCCCC----CC--ccceeEEeEeeeccCCHHHHHHHHHHHHH
Confidence 3789999999999842 22 557999999995 6644566665555553
No 99
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=91.57 E-value=1.2 Score=38.90 Aligned_cols=74 Identities=20% Similarity=0.139 Sum_probs=54.5
Q ss_pred ceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcchHHHHHHHHHHH
Q psy1870 35 GWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQF 114 (264)
Q Consensus 35 ~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~s~~~~~~~~~~ 114 (264)
.-+||++--.++....+.. ..|++++++|++||.+... . + ++.||.+.+......+- .|.++...
T Consensus 59 ~~~LR~sLlp~LL~~l~~N-----~~~~~lFEiG~Vf~~~~~~---~-~--~~~E~~~l~~~~~g~~~----df~dlkg~ 123 (218)
T cd00496 59 RLLLRTHTSAVQARALAKL-----KPPIRIFSIGRVYRNDEID---A-T--HLPEFHQIEGLVVDKGL----TFADLKGT 123 (218)
T ss_pred eEEEeccCcHHHHHHHHhc-----CCCeeEEEEcCeEECCCCC---C-C--cCCccEEEEEEEECCCC----CHHHHHHH
Confidence 4689998887777544433 7799999999999987521 1 1 13399988877665432 27888889
Q ss_pred HHHHHHHhC
Q psy1870 115 EESLFGELG 123 (264)
Q Consensus 115 ~~~i~~~Lg 123 (264)
.+.+++.||
T Consensus 124 ve~ll~~l~ 132 (218)
T cd00496 124 LEEFAKELF 132 (218)
T ss_pred HHHHHHHhc
Confidence 999999999
No 100
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=91.13 E-value=0.27 Score=47.99 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=45.4
Q ss_pred CCceEEeecCC-------CCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEe
Q psy1870 21 RSQIYHLEPNY-------YGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKI 93 (264)
Q Consensus 21 ~~~ly~i~~~~-------~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~ 93 (264)
..++|.+..++ -+..+||.-..+. |.....+ .+ =++|++++|||+|.+. +. -.+-||+|.
T Consensus 171 ~~~~F~v~~~~~~~~~~~~~~~~yL~~Spql-----~lq~l~~--g~-~rVf~i~~~FR~E~~~---t~--rHl~EFt~l 237 (453)
T TIGR00457 171 AGELFRVSTDGIDFSQDFFGKEAYLTVSGQL-----YLETYAL--AL-SKVYTFGPTFRAEKSN---TS--RHLSEFWMI 237 (453)
T ss_pred CCCceEecccccccchhccCCccccccCHHH-----HHHHHhh--cc-cCceEeeeccccCCCC---CC--cCcchhccc
Confidence 45677765210 1456777665542 2221111 23 3689999999999853 11 133599999
Q ss_pred eEE-EEcCcchHHHHHHHH
Q psy1870 94 EMF-GVTLPEDSEKQLEQF 111 (264)
Q Consensus 94 E~~-~f~~pe~s~~~~~~~ 111 (264)
|++ +|..-++.++..+.+
T Consensus 238 e~e~~~~~~~dvm~~~E~l 256 (453)
T TIGR00457 238 EPEMAFANLNDLLQLAETL 256 (453)
T ss_pred eeeeecCCHHHHHHHHHHH
Confidence 999 477555555444433
No 101
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=91.11 E-value=0.11 Score=47.92 Aligned_cols=81 Identities=22% Similarity=0.201 Sum_probs=48.8
Q ss_pred CCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEE-EcCcchHHHHHHHH
Q psy1870 33 GNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG-VTLPEDSEKQLEQF 111 (264)
Q Consensus 33 ~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~~pe~s~~~~~~~ 111 (264)
+++.||+-..|..+=.+.. +- + =++|++|+|||+|.++ =-.+-||+|.|.+. |.+-++..+..+.+
T Consensus 52 ~~~~yL~~Spql~lk~ll~----~g--~-~rVfeigp~FRaE~~~------~rHl~EFtmLE~e~~~~d~~d~m~~~e~l 118 (304)
T TIGR00462 52 GRPLYLQTSPEYAMKRLLA----AG--S-GPIFQICKVFRNGERG------RRHNPEFTMLEWYRPGFDYHDLMDEVEAL 118 (304)
T ss_pred CcceeeecCHHHHHHHHHh----cc--C-CCEEEEcCceeCCCCC------CCcccHHHhHHHHHHcCCHHHHHHHHHHH
Confidence 4678998777643332222 11 2 4789999999999852 13567999999984 44334555555544
Q ss_pred HHHHHHHHHHhCCceEEE
Q psy1870 112 LQFEESLFGELGIHTRTL 129 (264)
Q Consensus 112 ~~~~~~i~~~Lglpyr~v 129 (264)
+. .+++.+..|+..+
T Consensus 119 i~---~i~~~~~~~~~~i 133 (304)
T TIGR00462 119 LQ---ELLGDPFAPWERL 133 (304)
T ss_pred HH---HHHHhcCCCcEEE
Confidence 43 3333344455543
No 102
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=91.04 E-value=0.2 Score=49.51 Aligned_cols=79 Identities=18% Similarity=0.207 Sum_probs=49.9
Q ss_pred ceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEE-EcCc
Q psy1870 23 QIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG-VTLP 101 (264)
Q Consensus 23 ~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~~p 101 (264)
+-|.+....-+.++||+-+.|--+=.+.. +- + =++|+++++||+|-+. + -+.-||+|.|.|. |..-
T Consensus 209 ~pF~t~~~~~~~~~yLriSpELylKrliv----gG--~-~rVfeIg~~FRnE~~~---~---rH~pEFTmlE~y~a~~d~ 275 (496)
T TIGR00499 209 RPFITHHNALDMDLYLRIAPELYLKRLIV----GG--F-EKVYEIGRNFRNEGVD---T---THNPEFTMIEFYQAYADY 275 (496)
T ss_pred eeEEeecccCCCceEEecCHHHHHHHHHh----CC--C-CceEEEecceecCCCC---C---cccchhheeehhhhcCCH
Confidence 44655321115789998776643322221 11 1 3789999999999742 1 4667999999984 6654
Q ss_pred chHHHHHHHHHHH
Q psy1870 102 EDSEKQLEQFLQF 114 (264)
Q Consensus 102 e~s~~~~~~~~~~ 114 (264)
++.++..++++..
T Consensus 276 ~dlm~~~E~li~~ 288 (496)
T TIGR00499 276 EDLMDLTENLFKF 288 (496)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666543
No 103
>KOG2784|consensus
Probab=90.02 E-value=0.29 Score=46.39 Aligned_cols=90 Identities=16% Similarity=0.207 Sum_probs=59.6
Q ss_pred CcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCc-eEEEEccCCCcCc
Q psy1870 60 LPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIH-TRTLNMGANELGA 138 (264)
Q Consensus 60 LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglp-yr~v~~~~~dl~~ 138 (264)
-|-+|+.|-++||||+-. -..+-||.|+|..+-...-. ...++..-+++|..||+. .|. .|+..-..
T Consensus 332 ~p~K~FSIDrVFRNEtvD------aTHLAEFHQVEGviad~glt----LgdLig~l~~ff~~lg~tnlrf--KPaynpYt 399 (483)
T KOG2784|consen 332 KPAKYFSIDRVFRNETVD------ATHLAEFHQVEGVIADKGLT----LGDLIGILMEFFTKLGATNLRF--KPAYNPYT 399 (483)
T ss_pred Ccccccchhhhhhccccc------hHHHHHHhhhceeeecCCCc----HHHHHHHHHHHHhccCCccccc--cCCCCCCC
Confidence 599999999999999821 12457999999998876543 456677778999999984 443 34443322
Q ss_pred hhhcccceeeecCcccccceeEecC
Q psy1870 139 QAYKKYDVEAWMPGRKHWGELSSCS 163 (264)
Q Consensus 139 ~a~~~ydiE~w~p~~~~~~Ev~s~s 163 (264)
..+.+ +-.|-.+...|.||+...
T Consensus 400 epsme--if~yh~gl~kwvEvgnSg 422 (483)
T KOG2784|consen 400 EPSME--IFSYHHGLFKWVEVGNSG 422 (483)
T ss_pred CceeE--EEEeccccceEEEEcCCC
Confidence 22221 123455666788886543
No 104
>PLN02221 asparaginyl-tRNA synthetase
Probab=89.73 E-value=0.5 Score=47.46 Aligned_cols=42 Identities=21% Similarity=0.143 Sum_probs=30.2
Q ss_pred eEEEecceeccCccCCccCCCceeeEEEEEeeEE-EEcCcchHHHHHH
Q psy1870 63 QIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMF-GVTLPEDSEKQLE 109 (264)
Q Consensus 63 ~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~-~f~~pe~s~~~~~ 109 (264)
+.|+++++||+|.+. .. -.+-||+|.|++ .|..-++.++..+
T Consensus 328 rVfeIgP~FRAE~s~--T~---RHL~EFtmlE~Emaf~d~~dvm~l~E 370 (572)
T PLN02221 328 SVYTFGPTFRAENSH--TS---RHLAEFWMVEPEIAFADLEDDMNCAE 370 (572)
T ss_pred CeEEEccceecCCCC--CC---cccccccceeeeeecCCHHHHHHHHH
Confidence 689999999999852 11 356899999999 4764455544433
No 105
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=89.40 E-value=0.26 Score=49.24 Aligned_cols=78 Identities=12% Similarity=0.173 Sum_probs=46.4
Q ss_pred CCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEE-EEc
Q psy1870 21 RSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMF-GVT 99 (264)
Q Consensus 21 ~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~-~f~ 99 (264)
+.++|.+.-- +..+||.-..+. |+...+. .++ =++|++++|||+|-++ ++ -.+-||+|.|++ .|.
T Consensus 248 ga~~F~v~yf--~~~~~L~qSpql-----~kq~li~-~g~-~rVfeI~p~FRaE~s~---T~--RHl~EFt~Le~E~~~~ 313 (550)
T PTZ00401 248 GANVFKLEYF--NRFAYLAQSPQL-----YKQMVLQ-GDV-PRVFEVGPVFRSENSN---TH--RHLTEFVGLDVEMRIN 313 (550)
T ss_pred cccccccccC--CCCeecCCCHHH-----HHHHHHh-cCC-CCEEEEeCeEeCCCCC---CC--CCccchhhhhhhhHhc
Confidence 4566776432 567888554442 2221111 112 3689999999999853 11 134699999994 676
Q ss_pred Cc-chHHHHHHHHH
Q psy1870 100 LP-EDSEKQLEQFL 112 (264)
Q Consensus 100 ~p-e~s~~~~~~~~ 112 (264)
.+ ++..+..+.++
T Consensus 314 ~~y~evm~~~e~l~ 327 (550)
T PTZ00401 314 EHYYEVLDLAESLF 327 (550)
T ss_pred CCHHHHHHHHHHHH
Confidence 54 45555555544
No 106
>PLN02532 asparagine-tRNA synthetase
Probab=89.33 E-value=0.53 Score=47.77 Aligned_cols=46 Identities=13% Similarity=0.111 Sum_probs=33.1
Q ss_pred ceEEEecceeccCccCCccCCCceeeEEEEEeeEEE-EcCcchHHHHHHHHH
Q psy1870 62 KQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG-VTLPEDSEKQLEQFL 112 (264)
Q Consensus 62 l~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~~pe~s~~~~~~~~ 112 (264)
=+.|+|+++||+|.+. ++ -.+-||+|+|.+. |..-++.++..+.++
T Consensus 390 ~rVYeIgP~FRAE~s~---T~--RHL~EFtmlE~Emaf~d~~dvM~l~E~lI 436 (633)
T PLN02532 390 GNVYTFGPRFRADRID---SA--RHLAEMWMVEVEMAFSELEDAMNCAEDYF 436 (633)
T ss_pred CceEEEccceecCCCC---CC--cccccccceeeeehhcCHHHHHHHHHHHH
Confidence 4789999999999853 21 2478999999994 775456655555444
No 107
>PLN02603 asparaginyl-tRNA synthetase
Probab=88.46 E-value=0.71 Score=46.35 Aligned_cols=41 Identities=20% Similarity=0.067 Sum_probs=29.1
Q ss_pred ceEEEecceeccCccCCccCCCceeeEEEEEeeEEE-EcCcchHHHH
Q psy1870 62 KQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG-VTLPEDSEKQ 107 (264)
Q Consensus 62 l~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~~pe~s~~~ 107 (264)
=++|+++++||+|.|. +. -.+-||+|.|++. |..-++.++.
T Consensus 322 ~rVy~igp~FRaE~s~---T~--RHL~EF~mlE~E~af~dl~d~m~~ 363 (565)
T PLN02603 322 SDVYTFGPTFRAENSN---TS--RHLAEFWMIEPELAFADLNDDMAC 363 (565)
T ss_pred cceEEEecceeCCCCC---Cc--cccccceeeeeeeecCCHHHHHHH
Confidence 3579999999999863 11 1346999999995 7654554443
No 108
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=88.24 E-value=0.37 Score=51.92 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=48.8
Q ss_pred ceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEE-EcCc
Q psy1870 23 QIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG-VTLP 101 (264)
Q Consensus 23 ~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~~p 101 (264)
+.|.+.....+.++||+=..|.-+=.+. .+- + =++|+|+++||+|-+. + -..-||+|.|.|. |.+-
T Consensus 807 ~pF~t~~~~~~~~~yLriSPELylKrLi----vgG--~-erVFEIg~~FRnE~~~---~---rHnpEFTmLE~y~a~~dy 873 (1094)
T PRK02983 807 RPFVTHINAYDMDLYLRIAPELYLKRLC----VGG--V-ERVFELGRNFRNEGVD---A---THNPEFTLLEAYQAHADY 873 (1094)
T ss_pred ceeEeeecCCCccchhhcChHHHHHHHH----hcc--c-CceEEEcceecCCCCC---C---CccccccchhhhhhcCCH
Confidence 4465432221567888766664322222 111 2 3789999999999842 2 3667999999996 5544
Q ss_pred chHHHHHHHHHH
Q psy1870 102 EDSEKQLEQFLQ 113 (264)
Q Consensus 102 e~s~~~~~~~~~ 113 (264)
++.++..++++.
T Consensus 874 ~d~m~l~E~li~ 885 (1094)
T PRK02983 874 DTMRDLTRELIQ 885 (1094)
T ss_pred HHHHHHHHHHHH
Confidence 666666666664
No 109
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=88.22 E-value=0.36 Score=43.29 Aligned_cols=64 Identities=30% Similarity=0.405 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCc---eEEEEccCCCcCchhhcccceeeecCcccccceeEecCCccchh
Q psy1870 104 SEKQLEQFLQFEESLFGELGIH---TRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQ 169 (264)
Q Consensus 104 s~~~~~~~~~~~~~i~~~Lglp---yr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~q 169 (264)
+.++++..++....+++.+||+ .+.......++++++...+|+|...+- +|.|++.+.+++||.
T Consensus 186 a~~~~d~~~~~~~~w~e~~Gi~~~~~~~l~~~~~e~a~y~~~~~d~~~~~~~--~~~E~~g~~dR~~~d 252 (254)
T cd00774 186 ANETLDYFYAFPHGFLELEGIANRGDRFLQHHPNESAHYASDCWDAEKLYVP--GWIEVSGGADRTDYD 252 (254)
T ss_pred hHHHHHHHHHHhhhHHHHcCCCcchhHHHhCChhhhhchHHhccCcceeeCC--ceEEEeeeechHHhh
Confidence 4778999998888999999997 444456677889999999999977666 699999999999885
No 110
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=86.96 E-value=4.5 Score=36.86 Aligned_cols=80 Identities=8% Similarity=-0.025 Sum_probs=55.2
Q ss_pred EEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcchH
Q psy1870 25 YHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDS 104 (264)
Q Consensus 25 y~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~s 104 (264)
+.+.+.. ++.+.|||---.+++-+.+... .-|.|++-++++||++. +|+|...-.+-...++
T Consensus 53 ~~~~~~~-Gr~laLRpD~T~~iAR~~a~~~----~~~~Rl~Y~g~VfR~~~-------------~~~Q~GvEliG~~~~a 114 (272)
T PRK12294 53 RSFWQHE-HQIYALRNDFTDQLLRYYSMYP----TAATKVAYAGLIIRNNE-------------AAVQVGIENYAPSLAN 114 (272)
T ss_pred eeeecCC-CCEEEEcCCCCHHHHHHHHhcC----CCCceEEEeccEeccCC-------------CcceeceEEECCCchh
Confidence 4455544 8899999999999998886431 34679999999999973 2677766666522222
Q ss_pred HHHHHHHHHHHHHHHHHhCCc
Q psy1870 105 EKQLEQFLQFEESLFGELGIH 125 (264)
Q Consensus 105 ~~~~~~~~~~~~~i~~~Lglp 125 (264)
. .+.+..+.+.++.+|+.
T Consensus 115 ~---~e~l~la~~~l~~~g~~ 132 (272)
T PRK12294 115 V---QQSFKLFIQFIQQQLRD 132 (272)
T ss_pred H---HHHHHHHHHHHHHhCCC
Confidence 2 34446666778888553
No 111
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=83.23 E-value=1.9 Score=39.66 Aligned_cols=54 Identities=26% Similarity=0.343 Sum_probs=39.8
Q ss_pred CCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEc
Q psy1870 33 GNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVT 99 (264)
Q Consensus 33 ~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~ 99 (264)
...+||.+.-|..+--+.+.-. -.++|++++||||- .|=+.-=||+|.|=|...
T Consensus 68 ~~~l~L~TSPEy~mKrLLAag~-------~~ifql~kvfRN~E------~G~~H~PEFTMLEWYrv~ 121 (322)
T COG2269 68 GKPLWLHTSPEYHMKRLLAAGS-------GPIFQLGKVFRNEE------MGRLHNPEFTMLEWYRVG 121 (322)
T ss_pred cceeeeecCcHHHHHHHHHccC-------CcchhhhHHHhccc------ccccCCCceeEeeeeccC
Confidence 4679999988988776666532 35799999999986 232222399999999743
No 112
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=79.18 E-value=0.88 Score=44.71 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=34.1
Q ss_pred CCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCc-cCCccCCCceeeEEEEEeeEEE
Q psy1870 33 GNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADEKGVYRVHCFTKIEMFG 97 (264)
Q Consensus 33 ~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~-s~g~~~~GL~R~reF~~~E~~~ 97 (264)
+-++|||=..|--+--+ ++.- + =+.|++++.||||- +. + .-=||+|.|.|.
T Consensus 227 d~dlyLRIApELyLKRl----iVGG--~-erVfEIgr~FRNEGid~---t----HNPEFTmlE~Y~ 278 (502)
T COG1190 227 DMDLYLRIAPELYLKRL----IVGG--F-ERVFEIGRNFRNEGIDT---T----HNPEFTMLEFYQ 278 (502)
T ss_pred CCceEEeeccHHHHHHH----HhcC--c-hhheeeccccccCCCcc---c----cCcchhhHHHHH
Confidence 56799998877543322 2221 1 27899999999996 31 1 113899999885
No 113
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=78.58 E-value=1.9 Score=41.91 Aligned_cols=74 Identities=14% Similarity=0.181 Sum_probs=47.2
Q ss_pred CCCCCCceEEeecCCCCCceEEeCCchHHHH-HHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeE
Q psy1870 17 SKGERSQIYHLEPNYYGNGWCLSGTAEMGIA-RYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEM 95 (264)
Q Consensus 17 ~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~-~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~ 95 (264)
..+ .+++|.++-- +.+.||.=+. .+. .++... + =+.|.+|++||.|.|. .++ .+-||.|+|+
T Consensus 166 ~EG-g~elF~v~yf--~~~a~LtqS~--QLyke~~~~a-l------~rVf~igP~FRAE~s~--T~R---HL~EF~~ld~ 228 (435)
T COG0017 166 TEG-GGELFKVDYF--DKEAYLTQSP--QLYKEALAAA-L------ERVFTIGPTFRAEKSN--TRR---HLSEFWMLDP 228 (435)
T ss_pred CCC-CceeEEEeec--CcceEEecCH--HHHHHHHHHH-h------CceEEecCceecCCCC--Ccc---hhhhHheecc
Confidence 345 6699998754 4667885432 221 111111 1 3689999999999964 222 5789999999
Q ss_pred EE-EcCcchHHHH
Q psy1870 96 FG-VTLPEDSEKQ 107 (264)
Q Consensus 96 ~~-f~~pe~s~~~ 107 (264)
.. |++-++.++.
T Consensus 229 Emaf~~~~d~m~l 241 (435)
T COG0017 229 EMAFADLNDVMDL 241 (435)
T ss_pred eeccCcHHHHHHH
Confidence 85 7775554433
No 114
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=76.57 E-value=1.4 Score=42.07 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=28.4
Q ss_pred ccHhHHHHHHHHhccccCCceeccCCccccccceeeecCC
Q psy1870 191 CAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDT 230 (264)
Q Consensus 191 ~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~~~ 230 (264)
+-++|+++++|++-.+++ -++||+||+|++ +.+++..
T Consensus 247 ~~~~r~~~~~L~~a~~e~-~~~LPpwLAP~q--V~IIpl~ 283 (387)
T PRK14938 247 VDVGLLVYYFLLESIRKQ-PPTLPDWLNPIQ--VRILPVK 283 (387)
T ss_pred EEecHHHHHHHHHhhhHH-hCcCCCccCcce--EEEEEeC
Confidence 457999999999866655 369999999999 4455443
No 115
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=71.54 E-value=30 Score=34.60 Aligned_cols=93 Identities=12% Similarity=0.134 Sum_probs=63.1
Q ss_pred eEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcch
Q psy1870 24 IYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPED 103 (264)
Q Consensus 24 ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~ 103 (264)
..+|.+.-+.+.-+||++-=.++....+... .+..|++++++|++|+.+... .. ..+|+.+..+..... +
T Consensus 403 ~i~l~NPls~e~svLRtsLlpgLL~~~~~N~--~~~~~~~lFEiG~Vf~~~~~~--~~----~~~e~~~l~~~~~g~--~ 472 (552)
T PRK09616 403 YVEVLNPISEDYTVVRTSLLPSLLEFLSNNK--HREYPQKIFEIGDVVLIDEST--ET----GTRTERKLAAAIAHS--E 472 (552)
T ss_pred eEEEcCCCccchheEeccchHHHHHHHHhcc--CCCCCeeEEEeeEEEecCCcc--cc----CcchhhEEEEEEECC--C
Confidence 5667655435667899988888886655433 557899999999999875311 11 124666555444332 2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCceEE
Q psy1870 104 SEKQLEQFLQFEESLFGELGIHTRT 128 (264)
Q Consensus 104 s~~~~~~~~~~~~~i~~~Lglpyr~ 128 (264)
. .|..+....+.++..||+++.+
T Consensus 473 ~--df~dlKg~ve~ll~~lgi~~~~ 495 (552)
T PRK09616 473 A--SFTEIKSVVQALLRELGIEYEV 495 (552)
T ss_pred C--CHHHHHHHHHHHHHHcCCeEEE
Confidence 1 2778888999999999997554
No 116
>PRK05425 asparagine synthetase AsnA; Provisional
Probab=62.78 E-value=4.4 Score=37.78 Aligned_cols=72 Identities=24% Similarity=0.267 Sum_probs=46.0
Q ss_pred ceeeecCcccccceeEecCCccchhhc--c---------cceeecCC----CceeEEecccccHhHHHHHHHHhccccCC
Q psy1870 145 DVEAWMPGRKHWGELSSCSDCTDYQAR--R---------LNIRTEDG----KFAHTLNGTACAIPRLLMALVETHQNQDG 209 (264)
Q Consensus 145 diE~w~p~~~~~~Ev~s~s~~~D~qa~--r---------l~i~y~~~----~~~ht~~gtg~~v~Rll~alLE~~~~~~G 209 (264)
||-+|.|-.+.-.|++|...+-|+.+- + ..+.|--. ..+.|+ |-|+|++|+...||..-+-.+-
T Consensus 228 Dilvw~~~l~~a~ELSSmGiRVd~e~L~~Qlk~~g~~dr~~l~~h~~ll~g~LP~Ti-GgGIGqsRL~M~LL~k~HIgEV 306 (327)
T PRK05425 228 DILVWNPVLDDAFELSSMGIRVDEEALKRQLKLTGDEDRLELEWHQALLNGELPLTI-GGGIGQSRLCMLLLQKAHIGEV 306 (327)
T ss_pred eEEEEccccCceeeecCcceEecHHHHHHHHHHcCCCccccCHHHHHHHhCCCCCcc-cccccHHHHHHHHhccchhccc
Confidence 788999988888999998877776432 1 11211111 245666 7789999999999976332111
Q ss_pred c-eeccCCc
Q psy1870 210 T-VNIPECL 217 (264)
Q Consensus 210 ~-i~lP~~L 217 (264)
. =.||+..
T Consensus 307 q~svW~~~~ 315 (327)
T PRK05425 307 QASVWPDEV 315 (327)
T ss_pred ccccCCHHH
Confidence 1 1666654
No 117
>TIGR00669 asnA aspartate--ammonia ligase, AsnA-type. The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer.
Probab=60.16 E-value=5.3 Score=37.22 Aligned_cols=73 Identities=25% Similarity=0.279 Sum_probs=45.5
Q ss_pred cceeeecCcccccceeEecCCccchhh--c---------ccceeecCC----CceeEEecccccHhHHHHHHHHhccccC
Q psy1870 144 YDVEAWMPGRKHWGELSSCSDCTDYQA--R---------RLNIRTEDG----KFAHTLNGTACAIPRLLMALVETHQNQD 208 (264)
Q Consensus 144 ydiE~w~p~~~~~~Ev~s~s~~~D~qa--~---------rl~i~y~~~----~~~ht~~gtg~~v~Rll~alLE~~~~~~ 208 (264)
-||-+|.|-.+.-.|++|+...-|-.+ + |..+.|--. ..+.|+ |-|+|++|+...||..-.-.+
T Consensus 234 GDilvw~~vl~~a~ElSSMGIRVd~~~L~~Qlk~~g~~dr~~l~~h~ell~g~LP~Ti-GGGIGqsRL~MfLL~k~HIgE 312 (330)
T TIGR00669 234 GDILVWNPVLGDAFELSSMGIRVDEDALRHQLALTGDEDRLELEWHQDLLNGELPQTI-GGGIGQSRLAMLLLQLKHIGE 312 (330)
T ss_pred ceEEEEchhcCceeeeecceeEECHHHHHHHHHHcCCCccccCHHHHHHHcCCCCccc-cccccHHHHHHHHhccccccc
Confidence 478888888778899999887766432 1 222222111 256676 778999999999997633211
Q ss_pred Cc-eeccCCc
Q psy1870 209 GT-VNIPECL 217 (264)
Q Consensus 209 G~-i~lP~~L 217 (264)
=. =.||+..
T Consensus 313 VQ~svW~~~~ 322 (330)
T TIGR00669 313 VQASVWPAAV 322 (330)
T ss_pred eeeeeCCHHH
Confidence 01 1677643
No 118
>PTZ00213 asparagine synthetase A; Provisional
Probab=55.45 E-value=5.9 Score=37.18 Aligned_cols=73 Identities=21% Similarity=0.144 Sum_probs=45.7
Q ss_pred cceeeecCcccccceeEecCCccchhhc--c---------cceeecCC----CceeEEecccccHhHHHHHHHHhccccC
Q psy1870 144 YDVEAWMPGRKHWGELSSCSDCTDYQAR--R---------LNIRTEDG----KFAHTLNGTACAIPRLLMALVETHQNQD 208 (264)
Q Consensus 144 ydiE~w~p~~~~~~Ev~s~s~~~D~qa~--r---------l~i~y~~~----~~~ht~~gtg~~v~Rll~alLE~~~~~~ 208 (264)
-||-+|.|-.+.-.|++|...+-|+.+- + ..+.|.-. ..+.|+ |-|+|++|+...||..-+-.+
T Consensus 253 GDilvw~~~l~~a~ELSSmGiRVd~esL~~Qlk~~g~~dr~~l~~h~~ll~g~LP~Ti-GGGIGqsRL~M~LL~k~HIgE 331 (348)
T PTZ00213 253 GDILVYNPVLDDVLELSSMGIRVDAEALRRQLEITNNTDRLKCMWHQMLLNGELPQTI-GGGIGQSRLCMFMLRKKHIGE 331 (348)
T ss_pred ceEEEechhcCceeecCCcceEEcHHHHHHHHHHcCCCccccCHHHHHHHcCCCCCcc-cccccHHHHHHHHhCcchhcc
Confidence 4788888877777899988877676532 1 22222111 255666 778999999999997533211
Q ss_pred Cc-eeccCCc
Q psy1870 209 GT-VNIPECL 217 (264)
Q Consensus 209 G~-i~lP~~L 217 (264)
=. =.||+..
T Consensus 332 VQ~svW~~~~ 341 (348)
T PTZ00213 332 VQCSVWPHET 341 (348)
T ss_pred eeeeeCCHHH
Confidence 01 1677643
No 119
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=49.70 E-value=11 Score=29.57 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=14.4
Q ss_pred eeccCCccccccceeeecCC
Q psy1870 211 VNIPECLQPFMFNKRIIGDT 230 (264)
Q Consensus 211 i~lP~~LaP~~~~~~~i~~~ 230 (264)
++||.||+|++ ..+++..
T Consensus 18 ~~~P~~lap~~--v~Ii~~~ 35 (121)
T cd00858 18 LRLPPALAPIK--VAVLPLV 35 (121)
T ss_pred EEcCCCcCCcE--EEEEecC
Confidence 69999999999 5566544
No 120
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors. Peptide chain release factors are important for protein synthesis since they direct the termination of translation in response to the peptide chain termination codons UAG and UAA. These are structurally distinct but both contain the PCRF domain [].; GO: 0016149 translation release factor activity, codon specific, 0006415 translational termination, 0005737 cytoplasm; PDB: 3D5A_X 3D5C_X 3MR8_V 3MS0_V 3F1G_X 3F1E_X 1ZBT_A 2IHR_1 2X9R_Y 2X9T_Y ....
Probab=47.31 E-value=69 Score=25.10 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=34.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhh
Q psy1870 100 LPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAY 141 (264)
Q Consensus 100 ~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~ 141 (264)
-..+|..+-..++++|.++.+.-|..+.++....++.++..+
T Consensus 57 GG~EA~lfa~~L~~MY~~~a~~~gw~~~~l~~~~~~~~G~k~ 98 (115)
T PF03462_consen 57 GGDEACLFAEELFRMYQRYAERRGWKVEVLDYSPGEEGGIKS 98 (115)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSSSEEE
T ss_pred CchHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCccceeE
Confidence 345788999999999999999999999999999988875443
No 121
>cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB.
Probab=37.85 E-value=18 Score=33.48 Aligned_cols=59 Identities=27% Similarity=0.328 Sum_probs=39.4
Q ss_pred ceeeecCcccccceeEecCCccchh--h---------cccceeecCC----CceeEEecccccHhHHHHHHHHhc
Q psy1870 145 DVEAWMPGRKHWGELSSCSDCTDYQ--A---------RRLNIRTEDG----KFAHTLNGTACAIPRLLMALVETH 204 (264)
Q Consensus 145 diE~w~p~~~~~~Ev~s~s~~~D~q--a---------~rl~i~y~~~----~~~ht~~gtg~~v~Rll~alLE~~ 204 (264)
||-+|.|-.+.-.|++|...+-|-. . .|..+.|... ..+.|+ |-|+|++|+...||..-
T Consensus 218 Dil~w~~~l~~a~ELSSmGiRVdee~L~~Ql~~~g~~dr~~l~~h~~ll~g~LP~Ti-GgGIGqsRL~M~LL~k~ 291 (309)
T cd00645 218 DILVWNPVLQRAFELSSMGIRVDEESLQKQLKLAGDEDRLELPFHKMLLNGELPQTI-GGGIGQSRLCMFLLQKA 291 (309)
T ss_pred eEEEEchhcCceeeecCcceEecHHHHHHHHHHcCCCccccCHHHHHHHcCCCCccc-cccccHHHHHHHHhccc
Confidence 7889988887888998877554321 1 1233333211 256666 77899999999999753
No 122
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=37.81 E-value=1.7e+02 Score=31.36 Aligned_cols=126 Identities=18% Similarity=0.267 Sum_probs=69.2
Q ss_pred eEEEecceeccCccCCccCCCce--eeEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCc-eEEEE-ccCCCcCc
Q psy1870 63 QIAAMSKCYRAEISVVADEKGVY--RVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIH-TRTLN-MGANELGA 138 (264)
Q Consensus 63 ~l~q~s~~fR~E~s~g~~~~GL~--R~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglp-yr~v~-~~~~dl~~ 138 (264)
+++..++|.|-.- -+.-|.- ..-=|+|.=-|+|-.|++-.-+=++.++.+.++++.|||| =+++. =.-+++|+
T Consensus 115 r~~~sQkCiR~nD---ldnVG~t~rH~TfFEMlGn~sFg~~~~~dYfK~EaI~~a~e~l~~lgi~~~~i~~~enfW~~GG 191 (902)
T TIGR03683 115 PLVISQPCIRLND---IDNVGRTGRHLTCFEMMAHHAFNYPDKEIYWKDETVEYCFEFLEELGIDPEEITYKESPWEGGG 191 (902)
T ss_pred Cceeccccccccc---cccccCCCCcchhhhhccceeeCCCCcccCcHHHHHHHHHHHHHHcCCCHHHeeecCCccCCCC
Confidence 5666678999754 1222322 1224677777999988875555667888888999779996 22222 23455664
Q ss_pred hhhcccceeeecCcccccceeEecCCccchhhcc---cce---eecCCCceeEEecccccHhHHHHHH
Q psy1870 139 QAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARR---LNI---RTEDGKFAHTLNGTACAIPRLLMAL 200 (264)
Q Consensus 139 ~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~qa~r---l~i---~y~~~~~~ht~~gtg~~v~Rll~al 200 (264)
++--.. |+.. . -.||++.-- .+|.-.. ..| +|. +++....=||.|++|+...+
T Consensus 192 pcGPcs--Ei~~--~--glEiwnlVF-mq~~~~~~~~~~~~~g~~~--~Lp~k~VDTG~GLER~~~v~ 250 (902)
T TIGR03683 192 NAGPCF--EVIV--G--GLELATLVF-MQYEEDKEGEIEIKGGRYS--EMPLKIVDTGYGLERFVWAS 250 (902)
T ss_pred CCCCce--eeee--C--cEeeeeeee-eeeccccccccccCCCeee--eCCCCceecCCCHHHHHHHH
Confidence 432222 2222 1 166655321 1121100 111 121 34444457888999987765
No 123
>PF15518 L_protein_N: L protein N-terminus; PDB: 2XI5_D 2XI7_D.
Probab=37.47 E-value=58 Score=27.82 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=25.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhCCceEEEEcc
Q psy1870 100 LPEDSEKQLEQFLQFEESLFGELGIHTRTLNMG 132 (264)
Q Consensus 100 ~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~ 132 (264)
..+.++.++++.-+....+++.|||+|.++-.-
T Consensus 98 ~~eSs~iT~eKY~~~~~~i~~~lgi~~EivIIR 130 (183)
T PF15518_consen 98 DNESSEITYEKYNEIFGDIFSQLGIDYEIVIIR 130 (183)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHT--EEEEEEE
T ss_pred cCcccHHHHHHHHHHHHHHHhhcCCCeEEEEEE
Confidence 345688999999999999999999998887643
No 124
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=33.09 E-value=2e+02 Score=30.89 Aligned_cols=124 Identities=17% Similarity=0.178 Sum_probs=68.2
Q ss_pred eEEEecceeccCccCCccCCCce--eeEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHH-hCCc-eEEEE-ccCCCcC
Q psy1870 63 QIAAMSKCYRAEISVVADEKGVY--RVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGE-LGIH-TRTLN-MGANELG 137 (264)
Q Consensus 63 ~l~q~s~~fR~E~s~g~~~~GL~--R~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~-Lglp-yr~v~-~~~~dl~ 137 (264)
+++..++|.|-.- -+.-|.- ..-=|+|.=-|+|-.|++-.-+=++.++.+.+++.+ |||| =+++. =.-+++|
T Consensus 118 ~~~~sQ~CiR~nD---ldnVG~t~rH~T~FEMlGn~sFg~~~~~~YfK~eaI~~a~e~lt~~lgi~~~~I~~~enfW~~G 194 (900)
T PRK13902 118 PLVISQPCIRLND---IDNVGRTGRHLTSFEMMAHHAFNYPDKEVYWKDETVEYCFEFFTKELGIDPEEITFKESWWEGG 194 (900)
T ss_pred Cceecccccchhh---hhhccccCCchhhhhhccceeeCCCCcccccHHHHHHHHHHHHHhhcCCCHHHeeecccccCCC
Confidence 5566668999754 1222222 122477887899998887555667788888899965 9997 22221 2345555
Q ss_pred chhhcccceeeecCcccccceeEecCCccchhhcccceeecCCCceeEEecccccHhHHHHHH
Q psy1870 138 AQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDGKFAHTLNGTACAIPRLLMAL 200 (264)
Q Consensus 138 ~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~qa~rl~i~y~~~~~~ht~~gtg~~v~Rll~al 200 (264)
+++--. .|+... -.||++.-- .+| +|.+=+|. +++....-||.|++|+...+
T Consensus 195 GpcGPc--sEi~~~----glEiwnlVF-mqy--~~~~g~~~--~Lp~k~VDTG~GLER~~~v~ 246 (900)
T PRK13902 195 GNAGPC--FEVLVR----GLELATLVF-MQY--KKDGNRYV--EMPLKIVDTGYGLERIAWAS 246 (900)
T ss_pred CCCCCc--eeeeeC----CEEeeeeee-eEE--EcCCCeee--eCCCCeeeCCcCHHHHHHHH
Confidence 433222 222221 156654321 112 11111222 34444447888999997766
No 125
>PRK08179 prfH peptide chain release factor-like protein; Reviewed
Probab=32.98 E-value=86 Score=27.36 Aligned_cols=38 Identities=11% Similarity=0.058 Sum_probs=33.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcC
Q psy1870 100 LPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELG 137 (264)
Q Consensus 100 ~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~ 137 (264)
-++++..+-..++.+|.++.+..|+.+.++....++.+
T Consensus 11 Gg~Ea~~fa~~L~~my~~~a~~~g~~~~ii~~~~~~~~ 48 (200)
T PRK08179 11 GPAECCLAVAKALERLLKEAARQGVRVTVLETETGRYP 48 (200)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence 35688889999999999999999999999999988873
No 126
>TIGR03072 release_prfH putative peptide chain release factor H. Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon.
Probab=31.63 E-value=98 Score=27.03 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=33.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcC
Q psy1870 100 LPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELG 137 (264)
Q Consensus 100 ~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~ 137 (264)
-++++..+-..++.+|.++.+..|+.+.++....++.+
T Consensus 10 GG~Ea~lfa~~L~~my~~~a~~~g~~~eii~~~~~~~~ 47 (200)
T TIGR03072 10 GPAECCLAVAKALERLTREAAARGVRVEVLEQEPGEVP 47 (200)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence 45688888999999999999999999999999888863
No 127
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=30.59 E-value=77 Score=21.04 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhCCceEEEEccCCC
Q psy1870 111 FLQFEESLFGELGIHTRTLNMGANE 135 (264)
Q Consensus 111 ~~~~~~~i~~~Lglpyr~v~~~~~d 135 (264)
.+..+.++|++.|++|..+++...+
T Consensus 11 ~C~~~~~~L~~~~i~y~~~dv~~~~ 35 (60)
T PF00462_consen 11 YCKKAKEFLDEKGIPYEEVDVDEDE 35 (60)
T ss_dssp HHHHHHHHHHHTTBEEEEEEGGGSH
T ss_pred CHHHHHHHHHHcCCeeeEcccccch
Confidence 3566788999999999999987663
No 128
>COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism]
Probab=30.10 E-value=39 Score=30.86 Aligned_cols=71 Identities=28% Similarity=0.338 Sum_probs=45.6
Q ss_pred ceeeecCcccccceeEecCCccchhhc-----------ccceeecCC----CceeEEecccccHhHHHHHHHHhccccCC
Q psy1870 145 DVEAWMPGRKHWGELSSCSDCTDYQAR-----------RLNIRTEDG----KFAHTLNGTACAIPRLLMALVETHQNQDG 209 (264)
Q Consensus 145 diE~w~p~~~~~~Ev~s~s~~~D~qa~-----------rl~i~y~~~----~~~ht~~gtg~~v~Rll~alLE~~~~~~G 209 (264)
||-+|.|-.+.--|++|....-|-++- |++..|... .++-|+ |-|+|-+|+...||..-.- |
T Consensus 235 Dilvwn~~l~~afElSSMGIRVde~~l~~Ql~ltgdeDrl~~~wHq~llng~lP~TI-GGGIGQSRl~M~lL~k~HI--G 311 (330)
T COG2502 235 DILVWNPVLGDAFELSSMGIRVDEDALKRQLALTGDEDRLELEWHQMLLNGELPQTI-GGGIGQSRLCMLLLQKKHI--G 311 (330)
T ss_pred cEEEechhccchheeecceeEecHHHHHHHHhccCchhhhcCHHHHHHHcCCCCccc-cCcccHHHHHHHHhccccc--c
Confidence 777888877777889888777664432 233333222 367777 7789999998888865221 3
Q ss_pred ce---eccCCcc
Q psy1870 210 TV---NIPECLQ 218 (264)
Q Consensus 210 ~i---~lP~~La 218 (264)
++ +||...+
T Consensus 312 eVQ~sVWp~ev~ 323 (330)
T COG2502 312 EVQASVWPQEVR 323 (330)
T ss_pred eeeeccCcHHHH
Confidence 22 6776543
No 129
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=29.92 E-value=4.1e+02 Score=24.26 Aligned_cols=88 Identities=18% Similarity=0.242 Sum_probs=53.9
Q ss_pred CCCCCcceEEEecceeccCccC-CccCCCceeeEEEEEeeEEEEcCc--chHHHHHHHHHHHHHHHHHHhCCc-----eE
Q psy1870 56 PESQLPKQIAAMSKCYRAEISV-VADEKGVYRVHCFTKIEMFGVTLP--EDSEKQLEQFLQFEESLFGELGIH-----TR 127 (264)
Q Consensus 56 syr~LPl~l~q~s~~fR~E~s~-g~~~~GL~R~reF~~~E~~~f~~p--e~s~~~~~~~~~~~~~i~~~Lglp-----yr 127 (264)
+-..=|.+.+-+.+|.|.-.++ |...+=|.+-+||. +...| ++..+.| .+=++.|||+ .|
T Consensus 41 ~Lgpepw~vAYVqPsrRP~DGRYGeNPNRLq~y~QfQ-----ViiKPsP~niQelY-------L~SL~~lGid~~~hDIR 108 (279)
T cd00733 41 ALGPEPWNVAYVEPSRRPTDGRYGENPNRLQHYYQFQ-----VIIKPSPDNIQELY-------LESLEALGINPKEHDIR 108 (279)
T ss_pred hcCCCcceeccccCCCCCCCCCcCCCchhhhhheeeE-----EEECCCCccHHHHH-------HHHHHHhCCCccccCee
Confidence 3444589999999999998743 65556677777774 45555 4666555 4456778884 77
Q ss_pred EEEcc--CCCcCchhhcccceeeecCcccccceeEec
Q psy1870 128 TLNMG--ANELGAQAYKKYDVEAWMPGRKHWGELSSC 162 (264)
Q Consensus 128 ~v~~~--~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~ 162 (264)
+|+=. +-.+|++- .-=|+|+.+ .||+..
T Consensus 109 FVEDnWEsPTLGAwG---LGWEVWldG----MEITQF 138 (279)
T cd00733 109 FVEDNWESPTLGAWG---LGWEVWLDG----MEVTQF 138 (279)
T ss_pred EeecCCCCCcccccc---cccEEEECC----eeeeee
Confidence 76522 11233321 234778766 677543
No 130
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=28.66 E-value=4e+02 Score=26.70 Aligned_cols=93 Identities=15% Similarity=0.150 Sum_probs=56.3
Q ss_pred eEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcch
Q psy1870 24 IYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPED 103 (264)
Q Consensus 24 ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~ 103 (264)
..+|.+.-+.+.-+||++-=.++....+... .+..|++++++|++|..... ..+ +.+++...-+- .+. ..
T Consensus 405 ~v~l~NPis~e~s~lR~SLlp~LL~~~~~N~--~~~~~~~lFEiG~Vf~~~~~-----~~~-~e~~~~~l~~~-~~g-~~ 474 (551)
T TIGR00471 405 DVKVANPKTLEYTIVRTSLLPGLLETLSENK--HHELPQKIFEIGDVVVKDDK-----SET-RSRVVTKLAVG-ITH-SE 474 (551)
T ss_pred cEEeCCCCchhhhHhHhhhHHHHHHHHHhcc--cCCCCeeEEEEEEEEEcCCc-----ccc-ccceeeEEEEE-EEC-CC
Confidence 4555554324455777777666664444333 56889999999999954221 011 33444433222 222 12
Q ss_pred HHHHHHHHHHHHHHHHHHhCCceEE
Q psy1870 104 SEKQLEQFLQFEESLFGELGIHTRT 128 (264)
Q Consensus 104 s~~~~~~~~~~~~~i~~~Lglpyr~ 128 (264)
+ .|..+....+.++..||+++..
T Consensus 475 ~--df~d~Kg~ve~ll~~l~i~~~~ 497 (551)
T TIGR00471 475 A--NFNEIKSIVAALARELGIEYEI 497 (551)
T ss_pred C--CHHHHHHHHHHHHHHcCCceEE
Confidence 2 2778888999999999997554
No 131
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=28.31 E-value=1e+02 Score=29.35 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=39.5
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccce
Q psy1870 99 TLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDV 146 (264)
Q Consensus 99 ~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydi 146 (264)
.-+.+|..+-..++.+|.++.+..|+.+.++....++.|+..+-.+.|
T Consensus 121 ~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g~ksa~l~i 168 (359)
T PRK00591 121 TGGDEAALFAGDLFRMYSRYAERQGWKVEILSASEGELGGYKEVIAEI 168 (359)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCceeEEEEEE
Confidence 345689999999999999999999999999999998877655444444
No 132
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=27.10 E-value=33 Score=31.72 Aligned_cols=88 Identities=19% Similarity=0.241 Sum_probs=45.7
Q ss_pred HhCCceEEEEccCCCcCchhh-------cccceeeecCcccccceeEecCC-ccchh--hccc---cee----------e
Q psy1870 121 ELGIHTRTLNMGANELGAQAY-------KKYDVEAWMPGRKHWGELSSCSD-CTDYQ--ARRL---NIR----------T 177 (264)
Q Consensus 121 ~Lglpyr~v~~~~~dl~~~a~-------~~ydiE~w~p~~~~~~Ev~s~s~-~~D~q--a~rl---~i~----------y 177 (264)
..+-|+.+..-|...-.++.. ..-.+|+.+++ .|+++++. +.|+. .+|+ ++. |
T Consensus 218 ~~~~p~fI~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~g----~Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~y 293 (335)
T PF00152_consen 218 YFTDPVFITDYPAEQSPFYKPPNDDDPGVAERFDLYIPG----GEIANGSQREHDPEELRERFEEQGIDPEEEMPIDEWY 293 (335)
T ss_dssp HSSSEEEEEEEBGGGSTTTBBBSSSTTTBBSEEEEEETT----EEEEEEEEB--SHHHHHHHHHHTTHHGGGSHHHGHHH
T ss_pred ccCCcEEEEecccccCcccccccccccccccceeEEEeC----EEEehHHhhhhHHHHHHHHhhhcccccccccchhHhH
Confidence 445578888877653222221 12244555555 89988875 45553 2332 221 1
Q ss_pred cCC-C--ceeEEecccccHhHHHHHHHHhccccCCceecc
Q psy1870 178 EDG-K--FAHTLNGTACAIPRLLMALVETHQNQDGTVNIP 214 (264)
Q Consensus 178 ~~~-~--~~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP 214 (264)
.+. + .+. .+|.|+|++|++..++..-.-.|- +.+|
T Consensus 294 l~~~~~G~pp-~~G~glG~eRLvm~l~g~~~Irdv-~~FP 331 (335)
T PF00152_consen 294 LEALKYGMPP-HGGFGLGLERLVMLLLGLKNIRDV-IPFP 331 (335)
T ss_dssp HHHHHTT--S-EEEEEEEHHHHHHHHHT-SSGGGG-SSS-
T ss_pred HHhhhccCcc-cCcceehHHHHHHHHcCCCcHHhe-ecCC
Confidence 111 1 233 269999999999999876443332 3444
No 133
>KOG2726|consensus
Probab=26.33 E-value=91 Score=29.97 Aligned_cols=45 Identities=13% Similarity=0.245 Sum_probs=38.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccce
Q psy1870 102 EDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDV 146 (264)
Q Consensus 102 e~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydi 146 (264)
.+|+.+-.+++++|.++.+.+|-.+++++.+.+++++..+....|
T Consensus 149 ~Ea~ift~el~~MY~~~a~~~~w~~~~l~~~~~~~~Gi~~At~~i 193 (386)
T KOG2726|consen 149 QEAQIFTMELVDMYQKYAERLGWKARVLEKAPGESGGIKSATLEI 193 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccceeehhcCCcccccceeeeeEe
Confidence 478999999999999999999999999999999999655444443
No 134
>PRK08787 peptide chain release factor 2; Provisional
Probab=25.52 E-value=1.3e+02 Score=28.06 Aligned_cols=47 Identities=11% Similarity=0.091 Sum_probs=38.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccce
Q psy1870 100 LPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDV 146 (264)
Q Consensus 100 ~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydi 146 (264)
-+.+|..+-..++.+|.++.+.-|+.+.+++...++.++..+-.+.|
T Consensus 76 GG~Ea~~~a~~LlrMY~r~A~~~g~~~evi~~~~g~~~Giksa~l~I 122 (313)
T PRK08787 76 GGTEAQDWAEILLRMYLRWAESRGWKTELMEVSGGEVAGIKSATVRI 122 (313)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCceeeEEEEEE
Confidence 45689999999999999999999999999999888877655444433
No 135
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=23.48 E-value=1.1e+02 Score=24.40 Aligned_cols=34 Identities=15% Similarity=0.336 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCc--eEEEEccCCCcC
Q psy1870 104 SEKQLEQFLQFEESLFGELGIH--TRTLNMGANELG 137 (264)
Q Consensus 104 s~~~~~~~~~~~~~i~~~Lglp--yr~v~~~~~dl~ 137 (264)
-.+..+++++.....|+.+||. +..+.+++.+++
T Consensus 21 Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~~~~ 56 (120)
T PF10865_consen 21 TGETLREAVKELAPVLAPLGIEVRLEEIELDEEEFA 56 (120)
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEEEECChHHHh
Confidence 4566777777778889999996 666666666654
No 136
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=22.94 E-value=1.5e+02 Score=28.28 Aligned_cols=48 Identities=4% Similarity=-0.014 Sum_probs=39.0
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccce
Q psy1870 99 TLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDV 146 (264)
Q Consensus 99 ~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydi 146 (264)
.-+.+|..+-..++.+|.++.+.-|+.+.++....++.|+..+-.+.|
T Consensus 134 ~GG~Ea~~~a~~L~~mY~~~a~~~g~~~evi~~~~~~~~g~ks~~~~i 181 (364)
T TIGR00020 134 AGGTEAQDWASMLYRMYLRWAERRGFKVEIIDYSEGEEAGIKSVTILI 181 (364)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEE
Confidence 345688899999999999999999999999999998887655444433
No 137
>KOG0554|consensus
Probab=22.76 E-value=35 Score=33.02 Aligned_cols=81 Identities=14% Similarity=0.267 Sum_probs=47.0
Q ss_pred CCceEEeecCCC------CCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEee
Q psy1870 21 RSQIYHLEPNYY------GNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIE 94 (264)
Q Consensus 21 ~~~ly~i~~~~~------~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E 94 (264)
..|||.++...+ ++..||.-..--.+-.+... + -+.|-+|++||.|.|. ..+ .+-||.|.|
T Consensus 167 aGE~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE~~a~~--L------srvyTfgP~FRAEnS~--tsR---HLAEFwMlE 233 (446)
T KOG0554|consen 167 AGEVFQVTTLTDYSKDFFGRPAFLTVSGQLHLEAMACA--L------SRVYTFGPTFRAENSH--TSR---HLAEFWMLE 233 (446)
T ss_pred CcceEEEEecCcccccccCCceEEEEeceehHHHHHhh--h------cceEeeccceecccCC--chh---HHhhhhhhh
Confidence 569999865432 55666655432222122111 1 2568899999999864 112 356899999
Q ss_pred EE-EEcCc-ch----HHHHHHHHHHH
Q psy1870 95 MF-GVTLP-ED----SEKQLEQFLQF 114 (264)
Q Consensus 95 ~~-~f~~p-e~----s~~~~~~~~~~ 114 (264)
.. +|+.. ++ +++.++.|++.
T Consensus 234 aE~AF~~sl~d~m~~~e~~~K~mik~ 259 (446)
T KOG0554|consen 234 AELAFAESLDDLMSCAEAYIKHMIKY 259 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 96 47772 32 34445555443
No 138
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=22.35 E-value=46 Score=30.33 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=20.8
Q ss_pred ecccccHhHHHHHHHHhccccCCceeccCC
Q psy1870 187 NGTACAIPRLLMALVETHQNQDGTVNIPEC 216 (264)
Q Consensus 187 ~gtg~~v~Rll~alLE~~~~~~G~i~lP~~ 216 (264)
+|.|+|++|++..++..-.-.+ .+.+|.+
T Consensus 250 ~G~giGidRL~m~~~g~~~Ird-v~~FPr~ 278 (280)
T cd00777 250 GGIALGLDRLVMLLTGSESIRD-VIAFPKT 278 (280)
T ss_pred CeEeEhHHHHHHHHcCCCchhe-EeecCCC
Confidence 6999999999999886544333 2556654
No 139
>PF01841 Transglut_core: Transglutaminase-like superfamily; InterPro: IPR002931 This domain is found in many proteins known to have transglutaminase activity, i.e. which cross-link proteins through an acyl-transfer reaction between the gamma-carboxamide group of peptide-bound glutamine and the epsilon-amino group of peptide-bound lysine, resulting in a epsilon-(gamma-glutamyl)lysine isopeptide bond. Tranglutaminases have been found in a diverse range of species, from bacteria through to mammals. The enzymes require calcium binding and their activity leads to post-translational modification of proteins through acyl-transfer reactions, involving peptidyl glutamine residues as acyl donors and a variety of primary amines as acyl acceptors, with the generation of proteinase resistant isopeptide bonds []. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' []. On the basis of the experimentally demonstrated activity of the Methanobacterium phage psiM2 pseudomurein endoisopeptidase [], it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease []. A subunit of plasma Factor XIII revealed that each Factor XIIIA subunit is composed of four domains (termed N-terminal beta-sandwich, core domain (containing the catalytic and the regulatory sites), and C-terminal beta-barrels 1 and 2) and that two monomers assemble into the native dimer through the surfaces in domains 1 and 2, in opposite orientation. This organisation in four domains is highly conserved during evolution among transglutaminase isoforms [].; PDB: 2F4M_A 2F4O_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B ....
Probab=22.19 E-value=1.6e+02 Score=21.79 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhCCceEEEEccCC
Q psy1870 112 LQFEESLFGELGIHTRTLNMGAN 134 (264)
Q Consensus 112 ~~~~~~i~~~Lglpyr~v~~~~~ 134 (264)
-.....+++.+|||-|++.....
T Consensus 58 a~l~~allr~~Gipar~v~g~~~ 80 (113)
T PF01841_consen 58 ASLFVALLRALGIPARVVSGYVK 80 (113)
T ss_dssp HHHHHHHHHHHT--EEEEEEEEE
T ss_pred HHHHHHHHhhCCCceEEEEEEcC
Confidence 33455688999999998865544
No 140
>PRK07342 peptide chain release factor 2; Provisional
Probab=21.91 E-value=2.2e+02 Score=27.00 Aligned_cols=47 Identities=13% Similarity=0.029 Sum_probs=38.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccce
Q psy1870 100 LPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDV 146 (264)
Q Consensus 100 ~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydi 146 (264)
-+.+|..+-..++.+|.++.+.-|+.+.++....++.++..+-.+.|
T Consensus 99 GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g~ksa~l~i 145 (339)
T PRK07342 99 GGTESQDWASMLLRMYTRWAERQGRKVEVLEVHDGEEAGIKSATILV 145 (339)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEE
Confidence 45689999999999999999999999999999998887654444433
No 141
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=21.07 E-value=1.8e+02 Score=27.73 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=38.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccce
Q psy1870 100 LPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDV 146 (264)
Q Consensus 100 ~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydi 146 (264)
-+.+|..+-..++.+|.++.+.-|+.+.++....++.|+..+-...|
T Consensus 122 GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g~ksa~l~i 168 (360)
T TIGR00019 122 GGDEAAIFAGDLFRMYSRYAESKGWKVEILSANETELGGYKEVIAEI 168 (360)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCcceEEEEEE
Confidence 45689999999999999999999999999999988877655444443
No 142
>PRK05589 peptide chain release factor 2; Provisional
Probab=20.98 E-value=2.4e+02 Score=26.50 Aligned_cols=47 Identities=9% Similarity=0.078 Sum_probs=38.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccce
Q psy1870 100 LPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDV 146 (264)
Q Consensus 100 ~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydi 146 (264)
-+.+|..+-..++.+|.++.+..|+.+.++....++.++..+-.+.|
T Consensus 96 GG~Ea~~fa~~L~~mY~~~a~~~g~~~~vi~~~~~~~~g~ks~~~~i 142 (325)
T PRK05589 96 GGTDAQDWTEMLLRMYTRWAEKKGYKVEIIDLLEGDEAGIKSVTLKI 142 (325)
T ss_pred CchHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEE
Confidence 44588999999999999999999999999999998887654444433
No 143
>PRK06746 peptide chain release factor 2; Provisional
Probab=20.54 E-value=2.5e+02 Score=26.43 Aligned_cols=54 Identities=9% Similarity=0.031 Sum_probs=41.8
Q ss_pred eeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccce
Q psy1870 93 IEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDV 146 (264)
Q Consensus 93 ~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydi 146 (264)
+|+..=.-+.+|..+-..++.+|.++.+.-|+.+.++....++.++..+-.+.|
T Consensus 90 leI~aG~GG~Ea~~~a~~Ll~MY~r~a~~~g~~~evi~~~~~~~~g~ksa~l~i 143 (326)
T PRK06746 90 LELHPGAGGTESQDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLI 143 (326)
T ss_pred EEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEE
Confidence 333334456789999999999999999999999999999988887654444433
No 144
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=20.24 E-value=1.9e+02 Score=27.71 Aligned_cols=47 Identities=9% Similarity=0.089 Sum_probs=38.4
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccc
Q psy1870 99 TLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYD 145 (264)
Q Consensus 99 ~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~yd 145 (264)
.-+++|.-+-..++.+|.++.+.-|+.+.++....++.|+..+-.+.
T Consensus 134 ~GG~Ea~lfa~~L~~mY~~~a~~~g~~~evi~~~~~~~gg~ks~~~~ 180 (367)
T PRK00578 134 AGGTEAQDWASMLLRMYLRWAERHGFKVEVLDYSEGEEAGIKSATFK 180 (367)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCCeeEEEEE
Confidence 34568889999999999999999999999999999888755444433
Done!