Query psy1870
Match_columns 264
No_of_seqs 170 out of 1352
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 18:26:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1870.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1870hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vbb_A Seryl-tRNA synthetase, 100.0 2E-67 7E-72 508.5 17.2 232 6-239 230-480 (522)
2 3lss_A Seryl-tRNA synthetase; 100.0 3.6E-67 1.2E-71 503.8 17.1 228 6-237 237-477 (484)
3 3qne_A Seryl-tRNA synthetase, 100.0 1.8E-66 6.3E-71 498.6 14.5 239 6-248 214-464 (485)
4 3err_A Fusion protein of micro 100.0 8.6E-65 2.9E-69 494.3 16.7 221 6-232 304-531 (536)
5 1wle_A Seryl-tRNA synthetase; 100.0 4.9E-64 1.7E-68 485.1 17.9 227 6-234 248-480 (501)
6 1ses_A Seryl-tRNA synthetase; 100.0 2.1E-60 7.1E-65 452.5 13.6 217 7-229 196-419 (421)
7 2dq0_A Seryl-tRNA synthetase; 100.0 4.3E-60 1.5E-64 454.0 15.2 219 6-230 222-446 (455)
8 2dq3_A Seryl-tRNA synthetase; 100.0 2.4E-58 8.2E-63 438.9 17.0 217 7-229 202-424 (425)
9 3mf2_A BLL0957 protein; aminoa 100.0 2.4E-50 8.2E-55 370.9 12.5 209 6-227 92-336 (346)
10 2cja_A Seryl-tRNA synthetase; 100.0 2.7E-46 9.2E-51 362.6 10.6 207 7-224 262-515 (522)
11 3ial_A Prolyl-tRNA synthetase; 100.0 8.9E-46 3E-50 359.1 11.8 213 8-230 86-308 (518)
12 4hvc_A Bifunctional glutamate/ 100.0 6E-44 2E-48 346.7 17.1 215 7-230 91-317 (519)
13 1nj1_A PROR, proline-tRNA synt 100.0 6.7E-44 2.3E-48 345.8 14.6 213 7-229 100-322 (501)
14 3ikl_A DNA polymerase subunit 100.0 4.9E-39 1.7E-43 307.0 16.0 197 7-224 133-353 (459)
15 1nj8_A Proline-tRNA synthetase 100.0 2.5E-37 8.5E-42 296.9 16.1 212 8-229 69-290 (459)
16 1hc7_A Prolyl-tRNA synthetase; 100.0 2.9E-36 1E-40 290.7 17.5 212 8-230 75-296 (477)
17 1qf6_A THRRS, threonyl-tRNA sy 100.0 4.4E-37 1.5E-41 305.9 8.3 204 7-230 301-548 (642)
18 3uh0_A Threonyl-tRNA synthetas 100.0 2.1E-35 7.1E-40 283.6 17.6 208 7-230 95-354 (460)
19 1ati_A Glycyl-tRNA synthetase; 100.0 1.1E-35 3.9E-40 288.4 10.4 189 35-230 182-407 (505)
20 2i4l_A Proline-tRNA ligase; al 100.0 5.3E-34 1.8E-38 273.5 16.0 215 7-229 97-373 (458)
21 2j3l_A Prolyl-tRNA synthetase; 100.0 8.9E-34 3.1E-38 278.3 15.9 130 8-142 78-208 (572)
22 1evl_A Threonyl-tRNA synthetas 100.0 2.7E-34 9.3E-39 270.8 8.2 204 7-230 60-307 (401)
23 1g5h_A Mitochondrial DNA polym 100.0 2.8E-32 9.7E-37 261.4 13.9 183 33-227 134-344 (454)
24 1nyr_A Threonyl-tRNA synthetas 100.0 5.4E-33 1.8E-37 276.6 9.0 209 7-230 301-554 (645)
25 3a32_A Probable threonyl-tRNA 99.9 4.2E-27 1.4E-31 226.3 14.4 205 7-228 79-345 (471)
26 2zt5_A Glycyl-tRNA synthetase; 99.9 6.1E-27 2.1E-31 234.3 12.9 130 33-167 237-412 (693)
27 1qe0_A Histidyl-tRNA synthetas 99.7 4E-17 1.4E-21 153.9 10.6 115 8-132 47-165 (420)
28 1h4v_B Histidyl-tRNA synthetas 99.6 5.8E-15 2E-19 139.2 12.7 115 8-131 48-164 (421)
29 1wu7_A Histidyl-tRNA synthetas 99.6 1.1E-14 3.9E-19 138.0 10.6 113 8-134 51-166 (434)
30 1htt_A Histidyl-tRNA synthetas 99.5 2.4E-14 8.2E-19 135.1 11.0 115 8-132 49-166 (423)
31 3dsq_A Pyrrolysyl-tRNA synthet 99.5 3E-13 1E-17 122.4 16.6 165 7-201 100-265 (288)
32 4e51_A Histidine--tRNA ligase; 99.5 1.3E-13 4.3E-18 132.4 10.7 114 8-130 77-192 (467)
33 1z7m_A ATP phosphoribosyltrans 99.4 8.6E-13 3E-17 122.0 12.5 112 8-132 67-181 (344)
34 3rac_A Histidine-tRNA ligase; 99.3 1.5E-11 5.1E-16 114.9 11.8 116 8-131 68-187 (373)
35 3od1_A ATP phosphoribosyltrans 99.3 3.4E-11 1.2E-15 113.5 12.2 110 8-130 55-165 (400)
36 3lc0_A Histidyl-tRNA synthetas 99.1 3E-10 1E-14 108.7 12.4 100 21-130 85-187 (456)
37 4g84_A Histidine--tRNA ligase, 99.0 1.2E-09 4E-14 103.9 10.5 98 21-128 69-167 (464)
38 4g85_A Histidine-tRNA ligase, 99.0 1.5E-09 5.3E-14 105.0 10.3 98 21-128 122-220 (517)
39 3net_A Histidyl-tRNA synthetas 99.0 3.4E-09 1.2E-13 101.5 11.8 109 9-129 58-183 (465)
40 1usy_A ATP phosphoribosyltrans 98.8 2.1E-08 7.3E-13 89.7 9.4 90 28-134 41-132 (275)
41 3qtc_A Pyrrolysyl-tRNA synthet 98.5 5.4E-07 1.8E-11 81.0 10.4 105 9-129 108-213 (290)
42 1nnh_A Asparaginyl-tRNA synthe 98.2 1.6E-05 5.6E-10 71.7 12.3 76 22-112 58-137 (294)
43 3l4g_A Phenylalanyl-tRNA synth 98.1 2.2E-05 7.5E-10 75.8 11.3 146 34-198 320-466 (508)
44 1b7y_A Phers, protein (phenyla 97.7 0.00066 2.2E-08 62.7 13.5 144 34-198 171-324 (350)
45 2du3_A O-phosphoseryl-tRNA syn 97.5 0.0015 5.2E-08 63.3 13.6 148 35-200 180-337 (534)
46 3pco_A Phenylalanyl-tRNA synth 96.9 0.0052 1.8E-07 56.1 10.2 141 35-200 163-306 (327)
47 1wyd_A Hypothetical aspartyl-t 96.7 0.0071 2.4E-07 57.2 9.6 76 21-112 169-246 (429)
48 1x54_A Asparaginyl-tRNA synthe 96.6 0.005 1.7E-07 58.3 8.5 76 21-112 170-247 (434)
49 2odr_B Phosphoseryl-tRNA synth 96.6 0.043 1.5E-06 54.0 15.0 149 34-200 198-348 (648)
50 2odr_A Phosphoseryl-tRNA synth 96.6 0.045 1.5E-06 54.0 15.0 149 34-200 198-348 (665)
51 2odr_D Phosphoseryl-tRNA synth 96.6 0.047 1.6E-06 54.0 15.0 149 34-200 198-348 (685)
52 2odr_C Phosphoseryl-tRNA synth 96.5 0.046 1.6E-06 54.2 14.6 148 35-200 199-348 (701)
53 2du7_A O-phosphoseryl-tRNA syn 96.5 0.028 9.5E-07 54.6 12.7 149 35-201 192-342 (549)
54 3a74_A Lysyl-tRNA synthetase; 96.5 0.012 4E-07 56.7 10.0 79 22-114 210-290 (493)
55 2rhq_A Phenylalanyl-tRNA synth 96.4 0.036 1.2E-06 49.5 12.1 146 34-200 108-266 (294)
56 1eov_A ASPRS, aspartyl-tRNA sy 96.1 0.016 5.6E-07 55.5 8.6 77 21-112 213-292 (487)
57 1e1o_A Lysyl-tRNA synthetase, 96.1 0.021 7.1E-07 55.0 9.2 80 22-114 219-299 (504)
58 3a5y_A GENX, putative lysyl-tR 96.1 0.0049 1.7E-07 56.7 4.5 80 22-114 73-157 (345)
59 3nem_A Aspartyl-tRNA synthetas 95.8 0.022 7.6E-07 53.9 8.2 82 17-113 169-252 (438)
60 1l0w_A Aspartyl-tRNA synthetas 95.5 0.013 4.4E-07 57.4 5.3 78 25-114 182-260 (580)
61 1c0a_A Aspartyl tRNA synthetas 95.5 0.013 4.3E-07 57.6 5.2 78 25-114 176-254 (585)
62 1n9w_A Aspartyl-tRNA synthetas 95.5 0.021 7.3E-07 53.8 6.5 76 21-112 160-238 (422)
63 4ah6_A Aspartate--tRNA ligase, 95.5 0.012 4.2E-07 58.0 4.9 76 24-113 186-263 (617)
64 3m4p_A Ehasnrs, asparaginyl-tR 95.4 0.016 5.4E-07 55.2 5.3 77 21-112 191-268 (456)
65 2xgt_A Asparaginyl-tRNA synthe 95.1 0.021 7E-07 54.0 5.2 77 21-113 167-245 (435)
66 3bju_A Lysyl-tRNA synthetase; 94.7 0.029 9.9E-07 54.3 5.1 80 22-114 212-292 (521)
67 4ex5_A Lysine--tRNA ligase; st 94.6 0.033 1.1E-06 54.0 5.1 79 23-114 241-320 (529)
68 3i7f_A Aspartyl-tRNA synthetas 93.3 0.088 3E-06 51.2 5.4 78 21-112 279-358 (548)
69 3cmq_A Phenylalanyl-tRNA synth 86.1 4.1 0.00014 38.0 10.0 147 22-199 105-286 (415)
70 3l4g_B Phenylalanyl-tRNA synth 78.4 11 0.00039 36.5 10.2 91 23-125 435-525 (589)
71 2rhq_B Phenylalanyl-tRNA synth 77.6 9.3 0.00032 38.6 9.5 98 24-129 535-639 (795)
72 12as_A Asparagine synthetase; 73.4 1.7 5.7E-05 39.4 2.5 62 142-204 232-308 (330)
73 1qe0_A Histidyl-tRNA synthetas 67.9 2.8 9.5E-05 38.5 2.8 33 188-229 305-337 (420)
74 1b7y_B Phers, protein (phenyla 67.8 11 0.00039 37.9 7.5 91 24-129 530-627 (785)
75 1htt_A Histidyl-tRNA synthetas 67.1 3.6 0.00012 37.8 3.4 34 188-230 303-336 (423)
76 1h4v_B Histidyl-tRNA synthetas 66.3 3.4 0.00012 37.9 3.1 34 188-230 304-337 (421)
77 3net_A Histidyl-tRNA synthetas 62.6 4.2 0.00014 38.2 3.0 31 183-221 342-373 (465)
78 3ig2_A Phenylalanyl-tRNA synth 45.9 1.2E+02 0.0042 24.8 11.8 106 23-129 46-161 (213)
79 1wu7_A Histidyl-tRNA synthetas 43.9 12 0.00042 34.4 2.8 26 188-222 309-335 (434)
80 3ica_A Phenylalanyl-tRNA synth 41.4 1.5E+02 0.005 24.3 11.2 106 23-129 46-161 (213)
81 2xi5_A RNA polymerase L, L-pro 30.7 60 0.002 26.6 4.5 46 87-132 85-131 (184)
82 4e51_A Histidine--tRNA ligase; 30.1 1.1E+02 0.0039 28.3 7.1 89 113-221 265-356 (467)
83 2f4m_A Peptide N-glycanase; gl 27.5 88 0.003 27.7 5.5 44 114-165 149-192 (295)
84 1x3z_A Peptide: N-glycanase; h 26.6 81 0.0028 28.5 5.1 51 109-167 185-235 (335)
85 1t1v_A SH3BGRL3, SH3 domain-bi 26.3 87 0.003 21.7 4.4 40 94-133 3-42 (93)
86 4g84_A Histidine--tRNA ligase, 23.5 54 0.0018 30.1 3.5 37 188-230 339-375 (464)
87 2d10_E Ezrin-radixin-moesin bi 22.7 15 0.00051 20.9 -0.3 14 229-242 9-22 (28)
88 3isr_A Transglutaminase-like e 22.1 1.2E+02 0.004 26.6 5.2 48 115-165 188-235 (293)
89 2d11_E Na(+)/H(+) exchange reg 20.9 17 0.00059 20.7 -0.3 14 229-242 9-22 (28)
No 1
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=100.00 E-value=2e-67 Score=508.55 Aligned_cols=232 Identities=35% Similarity=0.530 Sum_probs=208.8
Q ss_pred chhhhhhcCCCCCCCCCceEEeecCC-------CCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCc-cC
Q psy1870 6 CNALECNSKINSKGERSQIYHLEPNY-------YGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SV 77 (264)
Q Consensus 6 ~~~l~~~~G~~~~~~~~~ly~i~~~~-------~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~-s~ 77 (264)
...+|++||+++.+ .++||++++++ .++++||+||+|++++++|+++++||++||++++|+|+|||+|+ |+
T Consensus 230 ~~el~~~sG~l~~f-~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~ 308 (522)
T 3vbb_A 230 RKEVMQEVAQLSQF-DEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSH 308 (522)
T ss_dssp EHHHHHHHSCCC-C-CSCCCEEC------------CCEEECSSTHHHHHTTSTTCEECTTTCCEEEEEEEEEECSCCCC-
T ss_pred chHHHhhcCCcccC-cccceEeecCCccccccccCcceeEcccCcHHHHHHHhhhecccccCCeeEEEecccccCCCCcC
Confidence 35689999999988 88999998652 14689999999999999999999999999999999999999999 56
Q ss_pred CccCCCceeeEEEEEeeEEEEcCcch--HHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccc
Q psy1870 78 VADEKGVYRVHCFTKIEMFGVTLPED--SEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKH 155 (264)
Q Consensus 78 g~~~~GL~R~reF~~~E~~~f~~pe~--s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~ 155 (264)
|++++||+|+|||+|+|+|+||+|++ |+++|+++++.+++||+.||||||++.++++|||++++++||+|+|+|++++
T Consensus 309 GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~e~il~~LGLpyrvv~l~tgdlg~~asktyDiE~w~P~~~~ 388 (522)
T 3vbb_A 309 GRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGA 388 (522)
T ss_dssp ---CCCSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGCCTTCSEEEEEEEEETTTTE
T ss_pred CccCCCcceeeeeEEEEEEEEeCCChHHHHHHHHHHHHHHHHHHHHcCCceEEEEcCCccCCCchhheeceeEecCCCCc
Confidence 89999999999999999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred cceeEecCCccchhhcccceeecCC-------CceeEEecccccHhHHHHHHHHhccccCCceeccCCccccccce--ee
Q psy1870 156 WGELSSCSDCTDYQARRLNIRTEDG-------KFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNK--RI 226 (264)
Q Consensus 156 ~~Ev~s~s~~~D~qa~rl~i~y~~~-------~~~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~--~~ 226 (264)
|+||+|||||+|||++|++|+|.+. .|+||+||||+|++|+|+|||||||++|| |+||+.|+|||+|. .+
T Consensus 389 y~EIsScSnc~DyqArr~~iry~~~~~~~~k~~~vhtlNgs~lav~R~l~AiLEn~q~~dG-i~iP~~L~Py~~~~~~~~ 467 (522)
T 3vbb_A 389 FRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEFVHMLNATMCATTRTICAILENYQTEKG-ITVPEKLKEFMPPGLQEL 467 (522)
T ss_dssp EEEEEEEEECTTHHHHHHTCEESCC---CCCCCBCEEEEEEEEEHHHHHHHHHHHHBCSSE-EECCHHHHTTSCTTSSSE
T ss_pred eeEEEEecCCCCCccceeeeEEccccccCCCeeeceEEeccchHHHHHHHHHHHhCCCCCC-eecChHhcCeeCCCcceE
Confidence 9999999999999999999999752 49999999999999999999999999999 99999999999865 89
Q ss_pred ecCCCCCCccccc
Q psy1870 227 IGDTRGAPSLVKV 239 (264)
Q Consensus 227 i~~~~~~~~~~~~ 239 (264)
|+-.+..|...-.
T Consensus 468 ip~~~~~~~~~~~ 480 (522)
T 3vbb_A 468 IPFVKPAPIEQEP 480 (522)
T ss_dssp EECCSCCCC----
T ss_pred eecCCCCCcchhH
Confidence 9988888874333
No 2
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=100.00 E-value=3.6e-67 Score=503.78 Aligned_cols=228 Identities=35% Similarity=0.569 Sum_probs=213.7
Q ss_pred chhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCc-cCCccCCCc
Q psy1870 6 CNALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADEKGV 84 (264)
Q Consensus 6 ~~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~-s~g~~~~GL 84 (264)
...+|++||+++.+ +++||+++++ ++++||+||+|++++++++++++||++||++++|+|+|||+|+ |+|++++||
T Consensus 237 ~~~l~~~sG~~~~f-~e~mf~v~~~--~~~~~L~PTaE~~l~~l~~~~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL 313 (484)
T 3lss_A 237 NRDVMGEVAQLSQF-DEELYQVSGD--GDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGI 313 (484)
T ss_dssp EHHHHHHHSCHHHH-HHTCCEEESS--SSCEEECSSTHHHHHHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTT
T ss_pred cHHHHHhcCCcccc-cccceEeecC--CcceEEeccCcHHHHHHHhccccchhhCCeeEEeecCccCCCCCcCCcccCCc
Confidence 35789999999988 8899999875 5789999999999999999999999999999999999999999 668999999
Q ss_pred eeeEEEEEeeEEEEcCcch--HHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEec
Q psy1870 85 YRVHCFTKIEMFGVTLPED--SEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSC 162 (264)
Q Consensus 85 ~R~reF~~~E~~~f~~pe~--s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~ 162 (264)
+|+|||+|+|+|+||+|++ ++++|+++++++++||+.||||||++.++++|||++++++||+|+|+|++++|+||+||
T Consensus 314 ~RvrqF~kvE~~~f~~pe~~~s~~e~e~~~~~~e~il~~LGLpyrvv~l~tgdlg~~a~~~yDiE~w~P~~~~~~EIsS~ 393 (484)
T 3lss_A 314 FRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNICSGALNNAAAKKYDLEAWFPASGAFRELVSC 393 (484)
T ss_dssp SSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHTCCEEEEECCTTTCCSSCSEEEEEEEEETTTTEEEEEEEE
T ss_pred ceeeeEEEEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCCcccCCchhheechheecCCCCCeeEEEEe
Confidence 9999999999999999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhcccceeecCC----------CceeEEecccccHhHHHHHHHHhccccCCceeccCCccccccceeeecCCCC
Q psy1870 163 SDCTDYQARRLNIRTEDG----------KFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDTRG 232 (264)
Q Consensus 163 s~~~D~qa~rl~i~y~~~----------~~~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~~~~~ 232 (264)
|||+||||+|++|+|.+. .|+||+||||+|++|+|+|||||||++|| |+||+.|+|||+|..+|+....
T Consensus 394 Snc~dyqArr~~iry~~~~~~~~~~~~~~~vhtlNgt~~av~R~l~AiLEn~q~~dG-i~iP~~L~pym~g~~~i~~~~~ 472 (484)
T 3lss_A 394 SNCTDYQSQSVNCRYGPNLRGTAAQNVKEYCHMLNGTLCAITRTMCCICENYQTEEG-VVIPDVLRPYMMGIEMIRFENN 472 (484)
T ss_dssp EECTTHHHHHHTCEESSCCC----CCSCEECEEEEEEEEEHHHHHHHHHHHHBCSSE-EECCGGGGGGTTTCCEEECCCC
T ss_pred cCcccccccccceEEeccccccccCCCceeeeEEeccchHHHHHHHHHHHhcCCCCC-eeCChhhcCccCCcceeecCcc
Confidence 999999999999999742 39999999999999999999999999999 9999999999999999988877
Q ss_pred CCccc
Q psy1870 233 APSLV 237 (264)
Q Consensus 233 ~~~~~ 237 (264)
+|...
T Consensus 473 ~~~~~ 477 (484)
T 3lss_A 473 AQAEG 477 (484)
T ss_dssp -----
T ss_pred CCccc
Confidence 77643
No 3
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=100.00 E-value=1.8e-66 Score=498.56 Aligned_cols=239 Identities=33% Similarity=0.537 Sum_probs=212.5
Q ss_pred chhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccC--CCCCcceEEEecceeccCc-cCCccCC
Q psy1870 6 CNALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLP--ESQLPKQIAAMSKCYRAEI-SVVADEK 82 (264)
Q Consensus 6 ~~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~s--yr~LPl~l~q~s~~fR~E~-s~g~~~~ 82 (264)
...+|++||+++.+ +++||+++++ ++++||+||+|+++++++++++++ |++||++++|+|+|||+|+ ++|++++
T Consensus 214 ~~~l~~~sG~l~~f-~eemf~v~~~--~~~~~LipTaE~pl~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~ 290 (485)
T 3qne_A 214 NKEVMAKTAQLSQF-DEELYKVIDG--EDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAW 290 (485)
T ss_dssp EHHHHHHHSCHHHH-TTTCCEEEET--TEEEEECSSTHHHHHHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CC
T ss_pred cHHHHhhcCCcccc-ccceEEEeCC--CCeEEEeccccHHHHHHHhccccccchhcCCeeEEEecccccCCCCCCCccCC
Confidence 35789999999988 8899999875 468999999999999999999997 9999999999999999999 6689999
Q ss_pred CceeeEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEec
Q psy1870 83 GVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSC 162 (264)
Q Consensus 83 GL~R~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~ 162 (264)
||+|+|||+|+|+|+||+|++|+++|+++++.+++||+.||||||++.++++|||++++++||+|+|+|++++|+||+||
T Consensus 291 GL~RvhqF~kvE~~~f~~pe~s~~e~e~ml~~~e~il~~LgLpyrvv~~~tgdlg~~a~~tyDiE~w~P~~~~~~Eiss~ 370 (485)
T 3qne_A 291 GIFRVHAFEKIEQFVLTEPEKSWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGELNNAAAKKYDLEAWFPFQQEYKELVSC 370 (485)
T ss_dssp SSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGCCTTCSEEEEEEEEETTTTEEEEEEEE
T ss_pred CceeeeeeeeeeEEEEeCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCCcccCCchhhheeeeEeccCCCceeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhcccceeecCC-------CceeEEecccccHhHHHHHHHHhccccCCceeccCCccccccce-eeecCCCCCC
Q psy1870 163 SDCTDYQARRLNIRTEDG-------KFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNK-RIIGDTRGAP 234 (264)
Q Consensus 163 s~~~D~qa~rl~i~y~~~-------~~~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~-~~i~~~~~~~ 234 (264)
|||+||||+|++|+|.+. .|+||+||||+|++|+|+|||||||++|| |+||+.|+|||+|. .+|+-.+.+|
T Consensus 371 Snc~dyqArr~~iry~~~~~~~~~~~~vhtlNgt~lav~R~l~AiLEn~q~~dG-i~iP~~L~py~~g~~~~i~~~~~~~ 449 (485)
T 3qne_A 371 SNCTDYQSRNLEIRCGIKQQNQQEKKYVHCLNSTLSATERTICCILENYQKEDG-LVIPEVLRKYIPGEPEFIPYIKELP 449 (485)
T ss_dssp EECTTHHHHHTTCEECC------CCCBCEEEEEEEEEHHHHHHHHHHHSEETTE-EECCHHHHTTSTTCCSEEECCCCCS
T ss_pred cCCcCccccccceEEecccccCCCceeeEEEecchhHHHHHHHHHHHhcCCCCc-eecChhhcCccCCcceEeeccccCC
Confidence 999999999999999853 49999999999999999999999999999 99999999999999 9999998899
Q ss_pred c-ccccccccchHhh
Q psy1870 235 S-LVKVKTGISKAKK 248 (264)
Q Consensus 235 ~-~~~~~~~~~~~~~ 248 (264)
. .+-.|.++||.-|
T Consensus 450 ~~~~~~~~~~~~~~~ 464 (485)
T 3qne_A 450 KNTTSVKKAKGKNPK 464 (485)
T ss_dssp SCC------------
T ss_pred cccccccccCCCCCC
Confidence 8 5555555665433
No 4
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=100.00 E-value=8.6e-65 Score=494.34 Aligned_cols=221 Identities=31% Similarity=0.516 Sum_probs=210.9
Q ss_pred chhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCc-cCCccCCCc
Q psy1870 6 CNALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADEKGV 84 (264)
Q Consensus 6 ~~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~-s~g~~~~GL 84 (264)
...+|++||++|++ +++||+++ ++++||+||+|++++++++++++||++||++++|+|+|||+|+ |+|++++||
T Consensus 304 ~~~l~~~sG~~~~f-~e~mf~~~----~~~~~L~PT~E~~~~~l~~~~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL 378 (536)
T 3err_A 304 REKAFLGTGHFPAY-RDQVWAIA----ETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGL 378 (536)
T ss_dssp EHHHHHHHTCTTTT-GGGCCEET----TTTEEECSSTHHHHHHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTT
T ss_pred cHHHHHhcCCcccC-hhhceEec----CCCEEEccCCcHHHHHHHhcccccHhhCCeeEEEecccccCCccccCCCCCCc
Confidence 46799999999998 88999998 4689999999999999999999999999999999999999999 678999999
Q ss_pred eeeEEEEEeeEEEEcCcc--hHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEec
Q psy1870 85 YRVHCFTKIEMFGVTLPE--DSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSC 162 (264)
Q Consensus 85 ~R~reF~~~E~~~f~~pe--~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~ 162 (264)
+|+|||+|+|+|+||+|+ +++++|+++++.+++||+.||||||++.++++|||++++++||+|+|+|++++|+||+||
T Consensus 379 ~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~~i~~~LgLpyrvv~~~tgdlg~~a~~~yDiE~w~p~~~~~~Ei~s~ 458 (536)
T 3err_A 379 MRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSC 458 (536)
T ss_dssp SSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCTTTSCTTCSEEEEEEEEEGGGTEEEEEEEE
T ss_pred eeeeeeEEEEEEEEECCchHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCCcccCCChhheeeeeEecCCCCCeEEEEEe
Confidence 999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhcccceeecCC----CceeEEecccccHhHHHHHHHHhccccCCceeccCCccccccceeeecCCCC
Q psy1870 163 SDCTDYQARRLNIRTEDG----KFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDTRG 232 (264)
Q Consensus 163 s~~~D~qa~rl~i~y~~~----~~~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~~~~~ 232 (264)
|||+|||++|++|+|.++ .|+||+||||+|++|+|+|||||||++||+|+||+.|+||+ |..+|.|..+
T Consensus 459 sn~~dyqarr~~iry~~~~~k~~~vhtlngs~~a~~R~l~ailen~q~~dg~i~iP~~L~py~-g~~~~~~~~~ 531 (536)
T 3err_A 459 SALLDWQARRANLRYRDPEGRVRYAYTLNNTALATPRILAMLLENHQLQDGRVRVPQALIPYM-GKEVLEPGAH 531 (536)
T ss_dssp EEEETHHHHHHTCEEECTTSCEEECEEEEEEEEEETHHHHHHHHHHBCTTSCEECCGGGHHHH-TSSEECCC--
T ss_pred cCccChhhcccCeEEECCCCCeEeeeEEeccchhHHHHHHHHHHhcCCCCCcEeCChhhCCcc-CCcccCCCcc
Confidence 999999999999999975 49999999999999999999999999999999999999999 6889988643
No 5
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=100.00 E-value=4.9e-64 Score=485.06 Aligned_cols=227 Identities=44% Similarity=0.791 Sum_probs=211.4
Q ss_pred chhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCce
Q psy1870 6 CNALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVY 85 (264)
Q Consensus 6 ~~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~ 85 (264)
...+|++||++|++.+++||++++++ ++++||+||+|++++++++++++||++||++++|+|+|||+|+++|++++||+
T Consensus 248 ~~~l~~~sG~~~~f~e~emf~v~~~~-~~~l~L~PTaE~~~~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~ 326 (501)
T 1wle_A 248 RGVVFEGCGMTPNAKPSQIYNIDPSR-FEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLY 326 (501)
T ss_dssp CHHHHHHHTCCSSSSSCSSCBBCTTT-SSSCEECSSHHHHHHHHHTTEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSS
T ss_pred cHHHHHhhcCCCccCccccEEEecCC-CCeEEECCcCcHHHHHHHhhccCCcccCCeeEEeccCcccCCCCCCCCCcCce
Confidence 35689999999998444999998765 57899999999999999999999999999999999999999998778999999
Q ss_pred eeEEEEEeeEEEEcCc--chHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEecC
Q psy1870 86 RVHCFTKIEMFGVTLP--EDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCS 163 (264)
Q Consensus 86 R~reF~~~E~~~f~~p--e~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s 163 (264)
|+|||+|+|+|+||+| ++++++|+++++.+++||+.||||||++.++++|||++++++||+|+|+|++++|.|+++||
T Consensus 327 RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~~il~~LgLpyrvv~l~tgdlg~~a~~~~DiE~w~p~~~~~~Ei~s~s 406 (501)
T 1wle_A 327 RVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSAS 406 (501)
T ss_dssp SCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSTTTCSEEEEEEEEETTTTEEEEEEEEE
T ss_pred eeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCcccCCchhheecHhhcccccccceeEEecc
Confidence 9999999999999999 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhcccceeecCC----CceeEEecccccHhHHHHHHHHhccccCCceeccCCccccccceeeecCCCCCC
Q psy1870 164 DCTDYQARRLNIRTEDG----KFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDTRGAP 234 (264)
Q Consensus 164 ~~~D~qa~rl~i~y~~~----~~~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~~~~~~~ 234 (264)
||+|||++||+|+|.++ .++||+||||+|++|+|+|||||||++||+|+||++|+|||+ ..+|+++...|
T Consensus 407 n~~DfqarR~~iry~~~~gk~~~vHtlngSglav~R~l~alLEn~q~~dG~i~iP~~L~Py~g-~~~i~~~~~~~ 480 (501)
T 1wle_A 407 NCTDFQSRRLHIMFQTEAGELQFAHTVNATGCAVPRLLIALLESYQQKDGSVLVPPALQPYLG-TDRITTPTHVP 480 (501)
T ss_dssp ECTTHHHHHHTCEEECSSSCEEECEEEEEEEEEHHHHHHHHHHHHBCTTSCEECCGGGHHHHS-SSEECCCSSCC
T ss_pred ccccchhhhcCcEEECCCCCEEEEEEECCccchHHHHHHHHHHhCCCCCCCEeCChhhcCccC-cccccCcccCc
Confidence 99999999999999975 399999999999999999999999999999999999999996 88887544455
No 6
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=100.00 E-value=2.1e-60 Score=452.53 Aligned_cols=217 Identities=32% Similarity=0.539 Sum_probs=208.6
Q ss_pred hhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCc-cCCccCCCce
Q psy1870 7 NALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADEKGVY 85 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~-s~g~~~~GL~ 85 (264)
..+|++||+++++ .++||+++ +++++|+||+|++++++++++++||++||++++|+|+|||+|+ +.|++++||+
T Consensus 196 ~~l~~~sG~~~~f-~~emy~~~----d~~l~L~Pt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~ 270 (421)
T 1ses_A 196 EKAFLGTGHFPAY-RDQVWAIA----ETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLM 270 (421)
T ss_dssp HHHHHHHTCTTTT-GGGSCBBT----TSSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTS
T ss_pred HHHHHhcCCCCcC-chhcEEEc----CCeEEEeecCcHHHHHHhcccccCchhCCEEEEecCCeecCCccccCcCCCCCe
Confidence 5689999999998 88999997 4679999999999999999999999999999999999999999 6689999999
Q ss_pred eeEEEEEeeEEEEcCc--chHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEecC
Q psy1870 86 RVHCFTKIEMFGVTLP--EDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCS 163 (264)
Q Consensus 86 R~reF~~~E~~~f~~p--e~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s 163 (264)
|+|||+|+|+|+||+| ++++++|+++++.+++||+.||||||++.++++++|++++++||+|+|+|++++|.|+++||
T Consensus 271 R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il~~LGL~~rvv~l~t~dlg~~a~~~~DiE~w~p~~~~~~ei~s~s 350 (421)
T 1ses_A 271 RVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCS 350 (421)
T ss_dssp SCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCHHHHCTTCSEEEEEEEEETTTTEEEEEEEEE
T ss_pred eeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHHHHCCCceEEEEecCccCCchhhhcccHhheechhccchheeecc
Confidence 9999999999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhcccceeecCC----CceeEEecccccHhHHHHHHHHhccccCCceeccCCccccccceeeecC
Q psy1870 164 DCTDYQARRLNIRTEDG----KFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGD 229 (264)
Q Consensus 164 ~~~D~qa~rl~i~y~~~----~~~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~~ 229 (264)
+|+|||++|++|+|.++ .++||+||||+|++|+|+|||||||++||+|+||++|+||+ |..+|+|
T Consensus 351 ~~~Dfqarr~~i~y~~~~~~~~~vhtlngs~lav~R~l~allE~~~~~dG~i~iP~~L~Py~-g~~~i~~ 419 (421)
T 1ses_A 351 ALLDWQARRANLRYRDPEGRVRYAYTLNNTALATPRILAMLLENHQLQDGRVRVPQALIPYM-GKEVLEP 419 (421)
T ss_dssp EEETHHHHHHTCEEECTTSCEEECEEEEEEEEEETHHHHHHHHHHBCTTSCEECCGGGHHHH-SSSEECC
T ss_pred ccchhhhhhhcCEeECCCCCEEEEEecCCccchHHHHHHHHHHhCCCCCCCEecChhcCCcc-CccccCC
Confidence 99999999999999875 39999999999999999999999999999999999999999 8888875
No 7
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=100.00 E-value=4.3e-60 Score=453.98 Aligned_cols=219 Identities=40% Similarity=0.599 Sum_probs=209.4
Q ss_pred chhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCc-cCCccCCCc
Q psy1870 6 CNALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADEKGV 84 (264)
Q Consensus 6 ~~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~-s~g~~~~GL 84 (264)
...+|++||+++.+ .++||+++ +++++|+||+|++++.+|+++++||++||++++|+|+|||+|+ ++|++++||
T Consensus 222 ~~~l~~~sG~~~~f-~~emy~~~----d~~l~LrPt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL 296 (455)
T 2dq0_A 222 RRFVEEGSTSFEDF-EDVIYKVE----DEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGI 296 (455)
T ss_dssp CHHHHHTTSCTTHH-HHTCCBBT----TSSCEECSSTHHHHHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSS
T ss_pred CHHHHHhcCCCCCC-hHhhCeec----CCcEEEcCcCcHHHHHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCc
Confidence 35789999999998 88999997 5679999999999999999999999999999999999999999 668899999
Q ss_pred eeeEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEecCC
Q psy1870 85 YRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSD 164 (264)
Q Consensus 85 ~R~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~ 164 (264)
+|+|||+|+|+|+||+|++++++++++++.+++||+.|||||+++.++++++|++++++||+|+|+|++++|.|++|||+
T Consensus 297 ~R~rqF~kvE~~~f~~pe~s~~~~~e~l~~~~~il~~LGL~yrv~~~~~gdlg~~a~~~~diE~w~p~~~~~~ei~s~s~ 376 (455)
T 2dq0_A 297 FRVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEIPYRVVNICTGDLGYVAAKKYDIEAWMPGQGKFREVVSASN 376 (455)
T ss_dssp SSCSEEEEEEEEEEECTTTHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCSSCSEEEEEEEEETTTTEEEEEEEEEE
T ss_pred eeeeeeEeeeEEEecCHHHHHHHHHHHHHHHHHHHHHcCCceEEEECCCccccChhhceeeeeeecCcCCcccEEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhcccceeecCC-----CceeEEecccccHhHHHHHHHHhccccCCceeccCCccccccceeeecCC
Q psy1870 165 CTDYQARRLNIRTEDG-----KFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDT 230 (264)
Q Consensus 165 ~~D~qa~rl~i~y~~~-----~~~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~~~ 230 (264)
|+|||++||+|+|.++ .++||+||||+|++|+|+|||||||+++|+++||+||+||| |..+|+|+
T Consensus 377 c~DfqarR~~iry~~~~~g~~~~vHtlngs~lav~R~i~allE~~~~~dG~i~iP~~LaP~~-g~~~i~~~ 446 (455)
T 2dq0_A 377 CTDWQARRLNIRFRDRTDEKPRYVHTLNSTAIATSRAIVAILENHQEEDGTVRIPKVLWKYT-GFKEIVPV 446 (455)
T ss_dssp CTTTTHHHHTEEEESSTTSCCEECEEEEEEEEEHHHHHHHHHHHSBCTTSCEECCGGGHHHH-SCSEECCC
T ss_pred chhhHhhccCcEEecCCCCcEEEEEEEechHhHHHHHHHHHHHHccCCCCcEeCChhhCCcc-cccccCcc
Confidence 9999999999999864 39999999999999999999999999999999999999999 89999854
No 8
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=100.00 E-value=2.4e-58 Score=438.88 Aligned_cols=217 Identities=34% Similarity=0.599 Sum_probs=207.8
Q ss_pred hhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCc-cCCccCCCce
Q psy1870 7 NALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI-SVVADEKGVY 85 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~-s~g~~~~GL~ 85 (264)
..+|++||+++.+ .++||+++ +++++|+||+|++++.+++++++|+++||++++|+|+|||+|+ +.|++++||+
T Consensus 202 ~~l~~~sG~~~~f-~~emy~~~----~~~l~LrPt~e~~i~~~~~~~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~ 276 (425)
T 2dq3_A 202 PEILIGTGQLPKF-EEDLYKCE----RDNLYLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGII 276 (425)
T ss_dssp HHHHHHHSCTTTT-GGGSCBCT----TTCCEECSSTHHHHHGGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSS
T ss_pred HHHHHhcCCCCcC-hhhheEec----CCeEEEcCCCcHHHHHHHHhhccccccCCeEEEEecCEecCCCCcccccccCcc
Confidence 4689999999998 88999997 5689999999999999999999999999999999999999999 5689999999
Q ss_pred eeEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEecCCc
Q psy1870 86 RVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDC 165 (264)
Q Consensus 86 R~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~ 165 (264)
|+|||+|+|+|+||+|++++++++++++.+.++|+.|||||+++.++++++|++++++||+|+|+|++++|.|+++||||
T Consensus 277 R~reF~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~LGL~~rvv~l~~gdlg~~a~~~~diE~w~p~~~~~~ei~s~sn~ 356 (425)
T 2dq3_A 277 RQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLPYRVVELCTGDLGFSAAKTYDIEVWFPSQNKYREISSCSNC 356 (425)
T ss_dssp SCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTCCEEEEECCTTTCCTTCSEEEEEEEEEGGGTEEEEEEEEEEC
T ss_pred cccceEEeeEEEECCHHHHHHHHHHHHHHHHHHHHHCCCceEEEEecCCcCCChHHhccchhhccchhHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhcccceeecCC-----CceeEEecccccHhHHHHHHHHhccccCCceeccCCccccccceeeecC
Q psy1870 166 TDYQARRLNIRTEDG-----KFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGD 229 (264)
Q Consensus 166 ~D~qa~rl~i~y~~~-----~~~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~~ 229 (264)
+|||++||+|+|.++ .++|++||||+|++|+|+|||||||++||+|+||+||+|||+ ..+|+|
T Consensus 357 ~Dfqa~r~~i~y~~~~~~k~~~vHtl~Gs~~av~R~i~allE~~~~~~G~i~iP~~L~P~~~-~~~i~~ 424 (425)
T 2dq3_A 357 EDFQARRMNTRFKDSKTGKNRFVHTLNGSGLAVGRTLAAILENYQQEDGSVVVPEVLRDYVG-TDVIRP 424 (425)
T ss_dssp TTHHHHHHTEEEECTTTCSEEECEEEEEEEEEHHHHHHHHHHHTBCTTSCEECCTTTHHHHS-CSEECC
T ss_pred cccCcccCCeEEECCCCCeeEEEEEEeccccHHHHHHHHHHHhCCCCCCCEecCccccCccC-cccCCC
Confidence 999999999999974 399999999999999999999999999999999999999998 888873
No 9
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=100.00 E-value=2.4e-50 Score=370.87 Aligned_cols=209 Identities=17% Similarity=0.126 Sum_probs=187.8
Q ss_pred chhhhhhcCCCCCCCCCceEEeecCC-----------------------CCCceEEeCCchHHHHHHHhcc-ccCCCCCc
Q psy1870 6 CNALECNSKINSKGERSQIYHLEPNY-----------------------YGNGWCLSGTAEMGIARYLMNQ-TLPESQLP 61 (264)
Q Consensus 6 ~~~l~~~~G~~~~~~~~~ly~i~~~~-----------------------~~~~~~L~pTaE~~i~~l~~~~-~~syr~LP 61 (264)
...+|++||+++++ +++||.+..-. .+.++||+||+|.+++++++++ +++ +.|
T Consensus 92 ~~~~~e~SGhl~~F-~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l~~~d~~LiPtacvpl~~~~~~eg~i~--~~p 168 (346)
T 3mf2_A 92 SRAQLEKSGYLKSF-PNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLSPADLVLSPAACYPVYPIAASRGPLP--KGG 168 (346)
T ss_dssp EHHHHHHTTHHHHC-GGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGEEEEEEEECSSSSTTHHHHHHTTCSCC--TTC
T ss_pred CHHHHHhcCCcccC-hhhcceeecccccchhhhhhhhhhccccccccccCCCCEEEcccccHHHHHHHccCCccc--ccC
Confidence 46799999999999 99999985311 0247999999999999999986 777 449
Q ss_pred ceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCch--
Q psy1870 62 KQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQ-- 139 (264)
Q Consensus 62 l~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~-- 139 (264)
+++..+|+|||+|+| +||+|+|||+|+|++.||+||++.++++++++.++++|+.||||||++.. +|++++
T Consensus 169 lr~~~~g~CFR~EaS-----~GL~RvhqF~kvE~v~~~tpEqs~~e~e~l~~~ae~il~~LgLpyrv~~~--~D~~f~~~ 241 (346)
T 3mf2_A 169 LRFDVAADCFRREPS-----KHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARDLGLTFRVDYA--SDPFFGRV 241 (346)
T ss_dssp EEEEEEEEEECCCCC-----SSTTSCSEEEEEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEC--CCCCCHHH
T ss_pred eEEEEECCccCCcCC-----CCCeeeeeeEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEc--cCCCcCcc
Confidence 999999999999984 59999999999999999999999999999999999999999999999866 688876
Q ss_pred ----------hhcccceeeecCcccccceeEecCCccchhhcccceeecCCCceeEEecccccHhHHHHHHHHhccccCC
Q psy1870 140 ----------AYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDGKFAHTLNGTACAIPRLLMALVETHQNQDG 209 (264)
Q Consensus 140 ----------a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~qa~rl~i~y~~~~~~ht~~gtg~~v~Rll~alLE~~~~~~G 209 (264)
+.++||+|+|+|+++.|.||+|||||+|||++|++|+|.+..++||. |+|+|++|+++|||||||++.
T Consensus 242 G~l~~~~Q~~~~~kyDlevw~p~~~~y~EisS~Sn~~dfqarR~~Ir~~~~~~vHT~-~sglav~R~l~AiLen~G~d~- 319 (346)
T 3mf2_A 242 GQMKAVSQKQQQLKFELLIPLRSEEQPTACMSFNYHREHFGTTWGIQDANGEPAHTG-CVAFGMDRLAVAMFHTHGTDL- 319 (346)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSCSSSCEEEEEEEECTTHHHHHHTCBCTTSSBCEEE-EEEEEHHHHHHHHHHHHCSCG-
T ss_pred cchhhhccccccceEEEEEEcCCCCCeeEEEeeecccchhhhhhcceeCCCCeEEEc-ccchHHHHHHHHHHHHcCCCc-
Confidence 35799999999999999999999999999999999999876899997 999999999999999999875
Q ss_pred ceeccCCccccccceeee
Q psy1870 210 TVNIPECLQPFMFNKRII 227 (264)
Q Consensus 210 ~i~lP~~LaP~~~~~~~i 227 (264)
..||+.|++|+++.+-+
T Consensus 320 -~~wP~~lr~~l~~~~~~ 336 (346)
T 3mf2_A 320 -SAWPAKVRDILGLQPHV 336 (346)
T ss_dssp -GGSCHHHHHHTTSCCC-
T ss_pred -cccCHHHHHHhCCCccc
Confidence 58999999999866443
No 10
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=100.00 E-value=2.7e-46 Score=362.60 Aligned_cols=207 Identities=17% Similarity=0.156 Sum_probs=184.0
Q ss_pred hhhhhhcCCCCCCCCCceEEee-----c-------------------------CCCCCceEEeCCchHHHHHHHhccccC
Q psy1870 7 NALECNSKINSKGERSQIYHLE-----P-------------------------NYYGNGWCLSGTAEMGIARYLMNQTLP 56 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~-----~-------------------------~~~~~~~~L~pTaE~~i~~l~~~~~~s 56 (264)
..+|++||+++.+ .++||++. + .. +++++|+||+|++++.+++++++|
T Consensus 262 ~el~~~SGh~~~F-~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~l~LrPt~e~~i~~~f~~~i~s 339 (522)
T 2cja_A 262 WEVWMKSGHAKGV-YPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIA-EPIGGMCYAQCPPFWMYVAGETLP 339 (522)
T ss_dssp HHHHHHHTGGGTC-GGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHHHHHHHBC-CCCEEECSSSSGGGGGGTTTCEEC
T ss_pred HHHHhhcCCcCcc-ccceeeeecCCccchhhhhhhhhhhhccccccccccccccC-CCcEEEccCCcHHHHHHHHhcccc
Confidence 5689999999988 88999995 2 12 578999999999999999999999
Q ss_pred CCCCcceEEE-ecceeccCccCCccCCCceeeEEEEEeeEEEEcCcchHHHHHHHHH-HHHHHHHHHhCCceEEEEccCC
Q psy1870 57 ESQLPKQIAA-MSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFL-QFEESLFGELGIHTRTLNMGAN 134 (264)
Q Consensus 57 yr~LPl~l~q-~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~s~~~~~~~~-~~~~~i~~~Lglpyr~v~~~~~ 134 (264)
|++||++++| +|+|||+| + ++++||+|+|||+|+|+|+||+|+++++++++++ ...+.+++.|||| ++ .. .+
T Consensus 340 ~~~LPlrl~q~ig~~FR~E-p--gs~~GL~R~REF~q~E~~~F~~pe~s~ee~ee~i~~~~~~~l~~LGLp-~v-~~-~~ 413 (522)
T 2cja_A 340 NEEIPVKVFDRSGTSHRYE-S--GGIHGIERVDEFHRIEIVWIGTKEEVLKCAEELHDRYMHIFNDILDIE-WR-KA-RV 413 (522)
T ss_dssp GGGCSEEEEECSSEEECCC-S--SSCCCTTSCSEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHTSCCC-EE-EE-EC
T ss_pred cccCCeeEEEEcCceEeCC-C--CCCCCCeEeEEEEEeeEEEEeChHHHHHHHHHHHHHHHHHHHHHcCCC-EE-ee-cc
Confidence 9999999999 99999999 4 3589999999999999999999999999999999 8888888999999 54 33 33
Q ss_pred CcCc------------hhhcccceeeecC---cccccceeEecCCccchhhcccceeecCCCceeEEecccccHhHHHHH
Q psy1870 135 ELGA------------QAYKKYDVEAWMP---GRKHWGELSSCSDCTDYQARRLNIRTEDGKFAHTLNGTACAIPRLLMA 199 (264)
Q Consensus 135 dl~~------------~a~~~ydiE~w~p---~~~~~~Ev~s~s~~~D~qa~rl~i~y~~~~~~ht~~gtg~~v~Rll~a 199 (264)
|.++ .++.+||+|+|+| +++.+.|++||++|+|||++||+|+|.+..++|| +|+|+|++|+|+|
T Consensus 414 D~f~~a~~G~~G~~q~~a~~k~DiE~~~P~~~g~~~~~eisS~s~~~d~qarr~~Ir~~~~~~vht-~~~Glgv~Rli~A 492 (522)
T 2cja_A 414 TPWFMAQEGLLGLAEENTVGTTDYEACLPYRGPDGEWLEFQNVSINGDKYPKGFNVKLQSGDELWS-GCSGVGLERWAAV 492 (522)
T ss_dssp ----------------CCCEEEEEEECCGGGCTTCCCEEEEEEEECTTHHHHHHTCEETTCCCEEE-EEEEEEHHHHHHH
T ss_pred CCccccccccccchhccccceEEEEEecccccCCCcEEEEeeechhhhhcccccceEcCCCCEEEE-eccCcHHHHHHHH
Confidence 4333 2678999999999 5889999999999999999999999987789999 6999999999999
Q ss_pred HHHhccccCCceeccCCccccccce
Q psy1870 200 LVETHQNQDGTVNIPECLQPFMFNK 224 (264)
Q Consensus 200 lLE~~~~~~G~i~lP~~LaP~~~~~ 224 (264)
|||+||++++ .||+.|+||++|.
T Consensus 493 lLE~~~~~~~--~wP~~lr~ym~g~ 515 (522)
T 2cja_A 493 FLAQKGLDPA--NWPEEFRNRVGEM 515 (522)
T ss_dssp HHHHHCSCGG--GSCHHHHHHHCSC
T ss_pred HHHHcCCCCC--cCchHHHHhhCCC
Confidence 9999999876 9999999999875
No 11
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=8.9e-46 Score=359.11 Aligned_cols=213 Identities=16% Similarity=0.150 Sum_probs=191.5
Q ss_pred hhhh-hcCCCCCCCCCceEEeecCCC---CCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCC
Q psy1870 8 ALEC-NSKINSKGERSQIYHLEPNYY---GNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKG 83 (264)
Q Consensus 8 ~l~~-~~G~~~~~~~~~ly~i~~~~~---~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~G 83 (264)
.+|+ .+|+++.+ .++||++++++. +++++|+||+|++++.++++++.||++||++++|+++|||+|++ +++|
T Consensus 86 el~~k~sgh~~~f-~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~---~~~G 161 (518)
T 3ial_A 86 SFLKKESDHIKGF-EAECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETK---NTKP 161 (518)
T ss_dssp HHHTSSHHHHHHH-GGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCC---SCBT
T ss_pred HHHHhhcCCcccc-cccEEEEecCCCcccCcceeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCC---CCCC
Confidence 4565 58888766 889999998631 36899999999999999999999999999999999999999984 4799
Q ss_pred ceeeEEEEEeeEEEE-cCcchHHHHHHHHHHHHHHHH-HHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEe
Q psy1870 84 VYRVHCFTKIEMFGV-TLPEDSEKQLEQFLQFEESLF-GELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSS 161 (264)
Q Consensus 84 L~R~reF~~~E~~~f-~~pe~s~~~~~~~~~~~~~i~-~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s 161 (264)
|+|+|||+|+|+|+| |+++++++++..++++|.+|| +.|||||+++..+++|++.++.++++||+|+|+ +++.|+++
T Consensus 162 L~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~~~i~~~~LGlp~~~~~~~~~e~~~gA~yt~~iE~~~pd-gr~ie~gt 240 (518)
T 3ial_A 162 LIRVREIHWNEAHCCHATAEDAVSQLSDYWKVIDTIFSDELCFKGQKLRRVCWDRFPGADYSEVSDVVMPC-GRVLQTAG 240 (518)
T ss_dssp TTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHTTTTCCCCEEEEECGGGCCTTCSEEEEEEEECTT-SCEEEEEE
T ss_pred CceeeEEEEeeEEEEECCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeeecChhhccCCCccceEEEEEcCC-CCEEEEec
Confidence 999999999999999 888999999999999999999 999999999999999999889999999999998 68899999
Q ss_pred cCCccchhhcccceeecCC----CceeEEecccccHhHHHHHHHHhccccCCceeccCCccccccceeeecCC
Q psy1870 162 CSDCTDYQARRLNIRTEDG----KFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDT 230 (264)
Q Consensus 162 ~s~~~D~qa~rl~i~y~~~----~~~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~~~ 230 (264)
++++++.+++||+|+|.++ .++|+ ++.|++ +|+|+||||+|++++| ++||+|||||| +.|||..
T Consensus 241 ~~~Lg~~~s~rf~i~y~d~~g~~~~~h~-~~~G~~-~R~iaaliE~~~de~G-l~lP~~LAP~q--V~IiPi~ 308 (518)
T 3ial_A 241 IHNLGQRFSSTFDILYANKANESVHPYL-TCAGIS-TRVLACALSIHGDSGG-LVLPPLIAPIH--VVIIPIG 308 (518)
T ss_dssp EEEEETHHHHHTTCCEECTTCCEECCEE-EEEEEE-THHHHHHHHHHCBTTB-CCCCGGGCSCS--EEEEEES
T ss_pred eecccchhhhhcCcEEECCCCCEeeeEE-eccchH-HHHHHHHHHHhCCCCc-cccCCccceEE--EEEEEee
Confidence 9888887899999999987 38895 355555 9999999999999998 99999999999 6666644
No 12
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=100.00 E-value=6e-44 Score=346.73 Aligned_cols=215 Identities=14% Similarity=0.093 Sum_probs=193.8
Q ss_pred hhhhhh-cCCCCCCCCCceEEeecCCC---CCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCC
Q psy1870 7 NALECN-SKINSKGERSQIYHLEPNYY---GNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEK 82 (264)
Q Consensus 7 ~~l~~~-~G~~~~~~~~~ly~i~~~~~---~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~ 82 (264)
..||++ +|+++.+ .++||++++++. +++++|+||+|++++.+|++++.||++||++++|+++|||+|++ +++
T Consensus 91 ~~l~~k~sGh~~~f-~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~---~~~ 166 (519)
T 4hvc_A 91 QSALEKEKTHVADF-APEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFK---HPQ 166 (519)
T ss_dssp HHHHTTSCCSCGGG-GGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCS---CCB
T ss_pred HHHHhcccCCcccc-cccceEEeccCCcccccceeeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCC---CCC
Confidence 357776 8999886 889999987641 13699999999999999999999999999999999999999984 469
Q ss_pred CceeeEEEEEeeEEE-EcCcchHHHHHHHHHHHHHHHHHHh-CCceEEEEccCCCcCchhhcccceeeecCcccccceeE
Q psy1870 83 GVYRVHCFTKIEMFG-VTLPEDSEKQLEQFLQFEESLFGEL-GIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELS 160 (264)
Q Consensus 83 GL~R~reF~~~E~~~-f~~pe~s~~~~~~~~~~~~~i~~~L-glpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~ 160 (264)
||+|+|||+|+|+|+ ||+++++++++..+++.+.++|+.| ||||+++..+.++.+.++..+||+|+|+|+.+++.|++
T Consensus 167 Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~~~i~~~ll~lp~~~~~~t~~e~~~Ga~~t~~iEa~~p~~gr~~q~g 246 (519)
T 4hvc_A 167 PFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISASGRAIQGG 246 (519)
T ss_dssp TTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSCCCCEEEECCTTTSCTTSSEEEEEEEEETTTTEEEEEE
T ss_pred CCcceeEEEEeeEEEEecCHHHHHHHHHHHHHHHHHHHHHhcCCcceeeecCCccccCCchhheeeeeeeccCCCEEeec
Confidence 999999999999998 8999999999999999999999997 99999988877888888889999999999888999999
Q ss_pred ecCCccchhhcccceeecCC------CceeEEecccccHhHHHHHHHHhccccCCceeccCCccccccceeeecCC
Q psy1870 161 SCSDCTDYQARRLNIRTEDG------KFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDT 230 (264)
Q Consensus 161 s~s~~~D~qa~rl~i~y~~~------~~~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~~~ 230 (264)
+|++|++++++||+++|.++ .++|+ +|.|++ +|+|++|+|+|++++| +.||+||+|+| +.||+..
T Consensus 247 T~~~Lg~~~s~~~~i~y~d~~~~g~~~~vh~-~~~Gi~-~R~l~aliE~~~d~~g-l~~P~~laP~q--V~Iipi~ 317 (519)
T 4hvc_A 247 TSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQ-NSWGLT-TRTIGVMTMVHGDNMG-LVLPPRVACVQ--VVIIPCG 317 (519)
T ss_dssp EEEEEETHHHHHHTCEEECTTSTTCEEECEE-EEEEEE-THHHHHHHHHHCBTTB-CCCCTTTCSCS--EEEEECC
T ss_pred ccccccchhhhhcCcEEeccccCCCEEEEEE-ccccHH-HHHHHHHHHHhCcccc-ccccccCCCeE--EEEEEec
Confidence 99999999999999999983 38897 477777 9999999999999998 99999999999 6677654
No 13
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=100.00 E-value=6.7e-44 Score=345.80 Aligned_cols=213 Identities=15% Similarity=0.174 Sum_probs=194.1
Q ss_pred hhhhhh-cCCCCCCCCCceEEeecCCC---CCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCC
Q psy1870 7 NALECN-SKINSKGERSQIYHLEPNYY---GNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEK 82 (264)
Q Consensus 7 ~~l~~~-~G~~~~~~~~~ly~i~~~~~---~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~ 82 (264)
..+|++ +|+++.+ .++||++++++. +++++|+||+|++++.++++++.||++||++++|+++|||+|.+ +++
T Consensus 100 ~~l~~~~sG~~~~f-~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~---~~r 175 (501)
T 1nj1_A 100 EDELAKEAIHVKGF-EDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETK---HTR 175 (501)
T ss_dssp HHHHTTSHHHHHHT-TTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCS---CCB
T ss_pred HHHHhcccCCcccC-CcceEEEecCCCcccCCeeEEccCCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCC---CCC
Confidence 356776 8988866 889999987521 36799999999999999999999999999999999999999984 367
Q ss_pred CceeeEEEE-EeeEEE-EcCcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeE
Q psy1870 83 GVYRVHCFT-KIEMFG-VTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELS 160 (264)
Q Consensus 83 GL~R~reF~-~~E~~~-f~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~ 160 (264)
||+|+|||+ |+|+|+ |+++++++++++++++.+.++|+.|||||+++..+.++++.++..+||+|+|+|+ +.+.|++
T Consensus 176 Gl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~Lgl~~~~~~~~~~e~~~~a~~~~die~~l~~-g~~~ei~ 254 (501)
T 1nj1_A 176 PLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPWDKFPGSEYTVAFDTLMPD-GKTLQIG 254 (501)
T ss_dssp TTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCTTTSCTTCSEEEEEEEECTT-SCEEEEE
T ss_pred CCceeEEEeeeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchhhcCCcccceEEEEEcCC-CCEEEEE
Confidence 999999999 999996 6888999999999999999999999999999999999999999999999999998 6789999
Q ss_pred ecCCccchhhcccceeecCC----CceeEEecccccHhHHHHHHHHhccccCCceeccCCccccccceeeecC
Q psy1870 161 SCSDCTDYQARRLNIRTEDG----KFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGD 229 (264)
Q Consensus 161 s~s~~~D~qa~rl~i~y~~~----~~~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~~ 229 (264)
+|++|+|+++++++++|.++ .++|+ +|+|+| +|+|++|||+|++++| +.||+||+|++ +.||+.
T Consensus 255 t~~~lg~~~a~~~~~ry~~~~g~~~~~h~-~g~Gig-eRli~aliE~~~d~~G-l~~P~~laP~q--V~Iipi 322 (501)
T 1nj1_A 255 TVHNLGQTFARTFEIKFETPEGDHEYVHQ-TCYGLS-DRVIASVIAIHGDESG-LCLPPDVAAHQ--VVIVPI 322 (501)
T ss_dssp EEEEEETHHHHHHTCEEECTTSCEEECEE-EEEEEC-THHHHHHHHHTCCSSS-EECCTTTSSCS--EEEEEC
T ss_pred EEEeccccchhhcCeEEECCCCCEEeeee-ccccHH-HHHHHHHHHHcCcccC-ccCCccccCce--EEEEEe
Confidence 99999999999999999876 38898 799999 9999999999999999 99999999999 566665
No 14
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=100.00 E-value=4.9e-39 Score=307.00 Aligned_cols=197 Identities=14% Similarity=0.102 Sum_probs=160.0
Q ss_pred hhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCC-CCcceEEEecceeccCccCCccCCCce
Q psy1870 7 NALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPES-QLPKQIAAMSKCYRAEISVVADEKGVY 85 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr-~LPl~l~q~s~~fR~E~s~g~~~~GL~ 85 (264)
..+|+.||++..+ . ++|+|+++++++..|++...|++ +||++++|+|+|||+|+....+++||+
T Consensus 133 ~~~~~~SGH~d~~-~--------------~~LRPeTaqg~~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~ 197 (459)
T 3ikl_A 133 HKPGPLLPGDSAF-R--------------GGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVK 197 (459)
T ss_dssp BCCSCCCSSCSCC-T--------------TB-CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC----------C
T ss_pred ccccccCcchhhh-c--------------ceECCCCChhHHHHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcc
Confidence 3457788887666 2 89999999988888888888888 999999999999999962113679999
Q ss_pred eeEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCc---eEEEEccCCCcCchhhcccceeeecCcccccceeEec
Q psy1870 86 RVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIH---TRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSC 162 (264)
Q Consensus 86 R~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglp---yr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~ 162 (264)
|+|||+|+|+|.||+|++++++++++++....||+.|||+ ||+...+..+ +..++|||+|+|. +|.|+.+|
T Consensus 198 RvrEFtq~E~~~F~~Pe~~~e~~~~~~~~~~~~~~~LGi~~~~~r~~~~~~ee----A~~~~DiE~~~p~--G~~E~~g~ 271 (459)
T 3ikl_A 198 SIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNFSSSDCQDEE----GRKGNKLYYNFPW--GKELIETL 271 (459)
T ss_dssp CCCEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHCSSGGGEEEEEECCSS----SSCEEEEEEECSS--CEEEEEEE
T ss_pred cccceeeeeEEEEeChhHHHHHHHHHHHHHHHHHHHhCCChhhEEEeecCchH----HHhhcCeEEEcCC--ceEEEeee
Confidence 9999999999999999999999999999999999999998 9999986555 6779999999999 69999999
Q ss_pred CCccchhhcc----cceeecC--C--CceeEEecccccHhHHHHHHHHhccccCC------------ceeccCCcccccc
Q psy1870 163 SDCTDYQARR----LNIRTED--G--KFAHTLNGTACAIPRLLMALVETHQNQDG------------TVNIPECLQPFMF 222 (264)
Q Consensus 163 s~~~D~qa~r----l~i~y~~--~--~~~ht~~gtg~~v~Rll~alLE~~~~~~G------------~i~lP~~LaP~~~ 222 (264)
+||+|||+++ ++++|.+ . +++|+++++++|++|+++|+||+..+++| .++||+||||||+
T Consensus 272 sn~tDfqL~~~~~~~~~~~~~~dg~~k~~P~vi~~s~Gv~R~~~AiLe~~~de~~~~~~~~~~~~R~vl~lP~~LAP~qV 351 (459)
T 3ikl_A 272 WNLGDHELLHMYPGNVSKLHGRDGRKNVVPCVLSVNGDLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKV 351 (459)
T ss_dssp EEEETHHHHHHSCSCSSSSCCBSSSCBCCCEEEEEEEEHHHHHHHHHHTTCC-------------CCCCCCCTTTCSCCE
T ss_pred eccchhhhhccccccCceeEccCCCeeeeeEEEEecccHHHHHHHHHHHHhhhccccccccccccceEEEeCcccCCceE
Confidence 9999999876 3345543 3 47888889999999999999999666443 1899999999995
Q ss_pred ce
Q psy1870 223 NK 224 (264)
Q Consensus 223 ~~ 224 (264)
.+
T Consensus 352 ~I 353 (459)
T 3ikl_A 352 AL 353 (459)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 15
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=100.00 E-value=2.5e-37 Score=296.87 Aligned_cols=212 Identities=15% Similarity=0.173 Sum_probs=187.4
Q ss_pred hhhh-hcCCCCCCCCCceEEeecCCC---CCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCC
Q psy1870 8 ALEC-NSKINSKGERSQIYHLEPNYY---GNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKG 83 (264)
Q Consensus 8 ~l~~-~~G~~~~~~~~~ly~i~~~~~---~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~G 83 (264)
.||+ ++|++..+ .++||++++++. +++++|+||+|++++.++++++.||++||+++||+++|||+|.+ ..+|
T Consensus 69 ~l~~~~~G~~~~~-~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~---~~rG 144 (459)
T 1nj8_A 69 DLLAKEAEHIKGF-EDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETK---HTRP 144 (459)
T ss_dssp HHHHHHCSSSGGG-GGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCS---CCBT
T ss_pred HHHhhhcCccccc-chhhEEEeccCcccCCCeeEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccC---CCCC
Confidence 4566 49999554 889999998731 46899999999999999999999999999999999999999984 2679
Q ss_pred ceeeEEEE-EeeEEE-EcCcchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEe
Q psy1870 84 VYRVHCFT-KIEMFG-VTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSS 161 (264)
Q Consensus 84 L~R~reF~-~~E~~~-f~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s 161 (264)
|+|+|||+ |.|+|+ +++++++++++.++++.+.++|+.|||||++...+..+.+.++..++++|+++|. +...|+++
T Consensus 145 l~R~REF~qq~d~~~~~~~~~~a~~e~~~~i~~~~~~~~~LGl~~~~~~~~~~ek~~ga~~~~~ie~~~~d-g~~~e~gt 223 (459)
T 1nj8_A 145 LIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTLGIPYLISKRPEWDKFPGAEYTMAFDTIFPD-GRTMQIAT 223 (459)
T ss_dssp TTBCSBCSCEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECTTSCCTTCSEEEEEEEECTT-SCEEEEEE
T ss_pred ceEeeeeeccCcEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCceEEeecCchhhcCCcccceeEEEEcCC-CcEEEEEE
Confidence 99999999 999998 5778899999999999999999999999998888877888888889999999997 45678999
Q ss_pred cCCccchhhcccceeecCC----CceeEEecccccHhHHHHHHHHhccccCCceeccCCccccccceeeecC
Q psy1870 162 CSDCTDYQARRLNIRTEDG----KFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGD 229 (264)
Q Consensus 162 ~s~~~D~qa~rl~i~y~~~----~~~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~~ 229 (264)
++++++.++++++++|.+. +++|+ +|+|+| +|+|++|+|+|++++| +.||+||+|++ +.||+.
T Consensus 224 ~~~lg~~~s~~~~~~Y~~~~G~~~~v~~-~~~Gig-eRli~alie~~~d~~g-l~~P~~laP~q--v~Iipi 290 (459)
T 1nj8_A 224 VHNLGQNFSKTFEIIFETPTGDKDYAYQ-TCYGIS-DRVIASIIAIHGDEKG-LILPPIVAPIQ--VVIVPL 290 (459)
T ss_dssp EEEEETHHHHHTTCEEECTTSSEEECEE-EEEEEC-THHHHHHHHHHCBTTB-CCCCTTSCSSS--EEEEEC
T ss_pred EeecccccccccCeEEECCCCCEeeeeE-eeccHH-HHHHHHHHHHhCCCce-eEcCCcCCCCc--EEEEec
Confidence 9889888899999999876 37787 699999 9999999999999888 99999999999 566655
No 16
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=100.00 E-value=2.9e-36 Score=290.67 Aligned_cols=212 Identities=17% Similarity=0.119 Sum_probs=176.9
Q ss_pred hhhhh-cCCCCCCCCCceEEeecCCC---CCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCC
Q psy1870 8 ALECN-SKINSKGERSQIYHLEPNYY---GNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKG 83 (264)
Q Consensus 8 ~l~~~-~G~~~~~~~~~ly~i~~~~~---~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~G 83 (264)
.||++ +|++..+ .++||++++++. +++++|+||+|++++.++++++.||++||+++||++++||+|.+ .+|
T Consensus 75 el~~~~sgh~d~f-~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~----~rG 149 (477)
T 1hc7_A 75 SFLRKEAEHVEGF-SPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMR----TRP 149 (477)
T ss_dssp TTC---------C-CTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSS----CBT
T ss_pred HHHhhcCCccccc-ccceEEEECCCCccCCCeEEEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCC----CCC
Confidence 46666 8987766 889999998631 36799999999999999999999999999999999999999984 359
Q ss_pred ceeeEEEEEeeEEE-EcCcchHHHHHHHHHHHHHHHH-HHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEe
Q psy1870 84 VYRVHCFTKIEMFG-VTLPEDSEKQLEQFLQFEESLF-GELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSS 161 (264)
Q Consensus 84 L~R~reF~~~E~~~-f~~pe~s~~~~~~~~~~~~~i~-~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s 161 (264)
|+|+|||+|.|+|+ +++++++++++..+++.+.++| +.|||||++...+..+....+..++++|++++.. +..++++
T Consensus 150 l~R~REF~q~d~~~~~~~~~~ad~E~~~~l~~~~~i~~~~Lgl~~~~~~~~~~e~~~g~~~~~~ie~~~~dg-r~~~~gt 228 (477)
T 1hc7_A 150 FLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALMKDG-KALQAGT 228 (477)
T ss_dssp TTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCTTTSCTTSSEEEEEEEECTTS-CEEEEEE
T ss_pred cceeEEEEEccEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCChHHhcCCcccceEEEEEcCCC-cEEEEee
Confidence 99999999999999 6788899999999999999999 8999999988777667666666789999999974 4457877
Q ss_pred cCCccchhhcccceeecCC----CceeEEecccccHhHHHHHHHHhccccCCceeccCCccccccceeeecCC
Q psy1870 162 CSDCTDYQARRLNIRTEDG----KFAHTLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDT 230 (264)
Q Consensus 162 ~s~~~D~qa~rl~i~y~~~----~~~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~~~ 230 (264)
+..+++..+++++++|.+. .++|+ .|.|++ +|+|++|+|+|++++| +.||++|+|++ +.||+..
T Consensus 229 ~~~lg~~~s~~~g~~y~~~~G~~~~~~~-~~~Gig-eRli~~lie~~~d~~g-l~~P~~laP~q--V~Iipi~ 296 (477)
T 1hc7_A 229 SHYLGENFARAFDIKFQDRDLQVKYVHT-TSWGLS-WRFIGAIIMTHGDDRG-LVLPPRLAPIQ--VVIVPIY 296 (477)
T ss_dssp EEEEETHHHHHTTCEEECTTSCEEECEE-EEEEEE-THHHHHHHHHHCBTTB-CCCCTTTCSCS--EEEEECC
T ss_pred eEEcccccccccCeEEECCCCCEEeeeE-eeccHH-HHHHHHHHHHhCcccc-ccCCcccCCce--EEEEEcC
Confidence 7777655699999999876 37886 588999 9999999999999988 89999999999 5666543
No 17
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=100.00 E-value=4.4e-37 Score=305.85 Aligned_cols=204 Identities=17% Similarity=0.266 Sum_probs=169.3
Q ss_pred hhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCcee
Q psy1870 7 NALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYR 86 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R 86 (264)
..||++||+++.+ .++||+ .+++ +++++|+||+|++++.++++...||++||+++||+|+|||+|.++ +++||+|
T Consensus 301 ~~l~~~sGh~~~~-~~~my~-~d~~-~~~~~LrP~~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~g--~~~GL~R 375 (642)
T 1qf6_A 301 RVLWEKTGHWDNY-KDAMFT-TSSE-NREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSG--SLHGLMR 375 (642)
T ss_dssp THHHHHHSHHHHH-GGGCEE-EEET-TEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGG--GCBTTTB
T ss_pred HHHHhhcCccccc-ccccee-eecC-CceEEecCCCCHHHHHHHHhhhhhccccCeEEEEeccEEecCCCc--cccCCce
Confidence 4689999999776 889999 7766 789999999999999999999999999999999999999999963 7899999
Q ss_pred eEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCC-ceEEEEccCCCcCchhhcccceeeecCcccccceeEecC--
Q psy1870 87 VHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGI-HTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCS-- 163 (264)
Q Consensus 87 ~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lgl-pyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s-- 163 (264)
+|||+|.|+|+||+|++++++++++++.+.++|+.||| +|++ .+++++ +....+.|+|.++++.+.++.+++
T Consensus 376 ~ReF~q~d~~~f~~~~~~~~e~~~~i~~~~~i~~~lGl~~~~v-~l~~~~----e~~~g~~e~w~~a~~~l~~~l~~~g~ 450 (642)
T 1qf6_A 376 VRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVV-KLSTRP----EKRIGSDEMWDRAEADLAVALEENNI 450 (642)
T ss_dssp CSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHGGGTCCCCEE-EEECCC----SSCCSCHHHHHHHHHHHHHHHHTTTC
T ss_pred eeeEEEccEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCCceEE-EEecCc----ccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999 7987 566654 344556677765443322221111
Q ss_pred ----------------------------Ccc----chh-hcccceeecCC------C-cee-EEecccccHhHHHHHHHH
Q psy1870 164 ----------------------------DCT----DYQ-ARRLNIRTEDG------K-FAH-TLNGTACAIPRLLMALVE 202 (264)
Q Consensus 164 ----------------------------~~~----D~q-a~rl~i~y~~~------~-~~h-t~~gtg~~v~Rll~alLE 202 (264)
+|+ ||+ ++|++++|.+. + ++| +++|+ ++|+|++|+|
T Consensus 451 ~~~~~~g~~afygpk~d~~~~d~~G~~~~~gti~~df~l~~r~~~~y~~~~g~~~~P~~~hrai~G~---ieR~i~~liE 527 (642)
T 1qf6_A 451 PFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILGS---MERFIGILTE 527 (642)
T ss_dssp CCEEETTCSCTTCCEEEEEEECTTCCEEEEEEEEEESSHHHHTTCCEECTTSCEECCEEEEEEEEEE---HHHHHHHHHH
T ss_pred CcEEcCCCcccccCcccEEEEccCCceEEeeeEEEeccCCccCCCEEEecCCCCcCcEEEEeccCCC---HHHHHHHHHH
Confidence 455 888 99999999865 2 567 56664 9999999999
Q ss_pred hccccCCceeccCCccccccceeeecCC
Q psy1870 203 THQNQDGTVNIPECLQPFMFNKRIIGDT 230 (264)
Q Consensus 203 ~~~~~~G~i~lP~~LaP~~~~~~~i~~~ 230 (264)
+|+ | .||.||+|++ +.||+..
T Consensus 528 ~~~---~--~~P~~laP~q--v~vipi~ 548 (642)
T 1qf6_A 528 EFA---G--FFPTWLAPVQ--VVIMNIT 548 (642)
T ss_dssp HHT---T--CCCTTTCSSC--EEEEESS
T ss_pred Hhc---C--CCCcccCCce--EEEEEeC
Confidence 998 4 7999999999 5666653
No 18
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=100.00 E-value=2.1e-35 Score=283.58 Aligned_cols=208 Identities=16% Similarity=0.200 Sum_probs=162.3
Q ss_pred hhhhhhcCCCCCCCCCceEEeecCC-CCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCce
Q psy1870 7 NALECNSKINSKGERSQIYHLEPNY-YGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVY 85 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~~~~-~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~ 85 (264)
..||++||+++.+ .++||+++++. .+++++|+||+|++++.+++++++||++||++++|+|+|||+|.++ .++||+
T Consensus 95 ~~l~~~sGh~~~~-~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~--~~~GL~ 171 (460)
T 3uh0_A 95 KTLWEKSGHWENY-ADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASG--ALSGLT 171 (460)
T ss_dssp HHHHHHHTCTTTS-GGGSCEECC------CEEECSCSHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTT--TCBTTT
T ss_pred HHHHHhcCCcccc-ccceEEEecCCCCCceEEEcccCcHHHHHHHHhccccccccCeEEEEecCeeeCCCCC--CCCCce
Confidence 4689999999877 88999998752 1578999999999999999999999999999999999999999853 379999
Q ss_pred eeEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHH-HHhCCc---------eEEEEccCCC---cCchhh---c-------
Q psy1870 86 RVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLF-GELGIH---------TRTLNMGANE---LGAQAY---K------- 142 (264)
Q Consensus 86 R~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~-~~Lglp---------yr~v~~~~~d---l~~~a~---~------- 142 (264)
|+|||+|+|+|+||+|+++++++.++++.+.++| +.|||+ |++. ++++. +|..+. .
T Consensus 172 R~ReF~q~d~~~f~~~e~~~~e~~~~i~~~~~~~~~~lGl~~~~~~~~~~~~~~-l~t~pe~~~G~~~~w~~ae~~L~~~ 250 (460)
T 3uh0_A 172 RLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFVKGGSGAESNYFIN-FSTRPDHFIGDLKVWNHAEQVLKEI 250 (460)
T ss_dssp BCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHTTTSCCC-----CCSSCEEE-EECCCSSCCSCHHHHHHHHHHHHHH
T ss_pred eeeeEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcccccccceEEE-EccCCcccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 999998 6553 45432 342111 0
Q ss_pred --------------------ccceeeecCcccccceeEecCCccchh-hcccceeecCC------C-ceeEEecccccHh
Q psy1870 143 --------------------KYDVEAWMPGRKHWGELSSCSDCTDYQ-ARRLNIRTEDG------K-FAHTLNGTACAIP 194 (264)
Q Consensus 143 --------------------~ydiE~w~p~~~~~~Ev~s~s~~~D~q-a~rl~i~y~~~------~-~~ht~~gtg~~v~ 194 (264)
+.|+.+. +..++.-+++++ +.||+ ++||+++|.++ + ++|+ .+.| +++
T Consensus 251 l~~~g~~~~~~~g~gafygpkid~~~~-d~~gr~~q~~Ti--qld~~~~~rf~l~y~~~~g~~~~P~~ih~-~~~G-g~e 325 (460)
T 3uh0_A 251 LEESGKPWKLNPGDGAFYGPKLDIMVT-DHLRKTHQVATI--QLDFQLPERFDLKFKDQDNSYKRPIMIHR-ATFG-SIE 325 (460)
T ss_dssp HHHHTCCEEEETTCSCSSCCEEEEEEE-CTTSCEEEEEEE--EEESHHHHHTTCCEECTTSCEECCEEEEE-EEEE-EHH
T ss_pred HHHhCCCeeECCCccccccceEEEEEE-ccCCCeeeeccc--ccccccccccceEEECCCCCccCcEEEec-Ccch-HHH
Confidence 1222221 122222333343 46775 88999999987 2 5675 3677 899
Q ss_pred HHHHHHHHhccccCCceeccCCccccccceeeecCC
Q psy1870 195 RLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDT 230 (264)
Q Consensus 195 Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~~~ 230 (264)
|+|++|+|+|. | .||.||+|++ +.||+..
T Consensus 326 Rli~~Lie~~~---g--~~P~~laP~q--v~Vipi~ 354 (460)
T 3uh0_A 326 RFMALLIDSNE---G--RWPFWLNPYQ--AVIIPVN 354 (460)
T ss_dssp HHHHHHHHHHT---T--CCCGGGCSCC--EEEEESS
T ss_pred HHHHHHHHHcC---C--CCCCCCCCce--EEEEEec
Confidence 99999999985 4 8999999999 6666655
No 19
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=100.00 E-value=1.1e-35 Score=288.36 Aligned_cols=189 Identities=19% Similarity=0.183 Sum_probs=161.9
Q ss_pred ceEEeCCchHHHHHHHhccccCC-CCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcchHHHHHHHHHH
Q psy1870 35 GWCLSGTAEMGIARYLMNQTLPE-SQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQ 113 (264)
Q Consensus 35 ~~~L~pTaE~~i~~l~~~~~~sy-r~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~s~~~~~~~~~ 113 (264)
.++|||+++++++..+++...|| ++||+++||+|+|||+|++ +++||+|+|||+|+|+|.||+|+++.+++.++++
T Consensus 182 ~~~LRPE~t~~i~~~~~~~~~sy~r~LP~rl~qig~~FR~E~~---pr~GL~R~REF~q~d~~~f~~~e~~~~~~~~~i~ 258 (505)
T 1ati_A 182 LAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEIT---PRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVE 258 (505)
T ss_dssp EEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSS---CCTGGGSCSEEEEEEEEEEECGGGHHHHHHHHHH
T ss_pred ceeecccchhHHHHHHHHHHHhcCCCCCEEEEEeeceeeCCCC---CCCCCCcccceEEeeEEEEECHHHHHHHHHHHHH
Confidence 57999999999998888888999 9999999999999999984 6899999999999999999999999999999999
Q ss_pred HHHHHHHHhCCceEEEEccC---CCcCchhhcccceeeecCcccccceeEecCCccchh-----h---------------
Q psy1870 114 FEESLFGELGIHTRTLNMGA---NELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQ-----A--------------- 170 (264)
Q Consensus 114 ~~~~i~~~Lglpyr~v~~~~---~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~q-----a--------------- 170 (264)
.+.+||++|||+++.+..++ +++.+++...||+|+|+|. +|.|+.+|++|+|++ +
T Consensus 259 ~~~~i~~~LGl~~~~v~~~~~~~~~~~~~~~~~~d~E~~~p~--~~~e~~g~~~~~d~~L~~~~~~~~~~~~~~~~~~n~ 336 (505)
T 1ati_A 259 ERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFPH--GSLELEGIAQRTDFDLGSHTKDQEALGITARVLRNE 336 (505)
T ss_dssp HHHHHHHHTTCCGGGEEEEECCTTTSCTTCSEEEEEEEEETT--EEEEEEEEEECTTHHHHHHCSSTTTTTCCSCCCCCS
T ss_pred HHHHHHHHcCCCeEEEEECCCChHhhhcccHHHHhHHhhcCC--CCccchhhhcccceecchhhccccccceeeeecccc
Confidence 99999999999865555444 5666677788999999987 689999999999987 2
Q ss_pred -cccceeecCC----CceeEEecccccHhHHHHHHHHhccc--------cCCceeccCCccccccceeeecCC
Q psy1870 171 -RRLNIRTEDG----KFAHTLNGTACAIPRLLMALVETHQN--------QDGTVNIPECLQPFMFNKRIIGDT 230 (264)
Q Consensus 171 -~rl~i~y~~~----~~~ht~~gtg~~v~Rll~alLE~~~~--------~~G~i~lP~~LaP~~~~~~~i~~~ 230 (264)
++++++|.++ ++.+++.+.++|++|++++|+|++++ +++.++||+||+|++ +.|++..
T Consensus 337 ~~~~~~~y~d~~g~~~y~p~vig~s~GieRli~alle~~~~~~~~~~gd~~~gl~~p~~laP~~--v~Vip~~ 407 (505)
T 1ati_A 337 HSTQRLAYRDPETGKWFVPYVIEPSAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIK--VAVIPLV 407 (505)
T ss_dssp CCCSCCCEECSSSCCEECCEEEEEEEEHHHHHHHHHHHHEEEEECTTSCEEEEECCCGGGCSCS--EEEEESC
T ss_pred cceeEEEEEcCCCCeeecceEEEEeeEHHHHHHHHHHHHhhhcccccccccccccCCcccCCce--EEEEEcC
Confidence 6899999876 25666667889999999999998632 133488999999999 5666554
No 20
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=100.00 E-value=5.3e-34 Score=273.54 Aligned_cols=215 Identities=13% Similarity=0.136 Sum_probs=171.8
Q ss_pred hhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCcee
Q psy1870 7 NALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYR 86 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R 86 (264)
..||+++|++... .++||++.|++ +++++|+||+|+.++.++++.+.||++||+++||+++|||+|++ +++||+|
T Consensus 97 ~el~~~sg~~d~~-~~em~~~~d~~-~~~~~LrPt~ee~t~~i~r~~~~s~~~lP~rl~~ig~~fR~E~~---p~~Gl~R 171 (458)
T 2i4l_A 97 ADLWRESGRYDAY-GPEMLRIADRH-KRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQR---PRFGVMR 171 (458)
T ss_dssp HHHHHHHTHHHHS-CTTSEEEECTT-CCEEEECSCCHHHHHHHHHHHCCBGGGCSEEEEEEEEEECCCSS---CBTGGGB
T ss_pred HHHHHhcCCcccc-ccceEEEEeCC-CCeEEECCCChHHHHHHHHHHHhhccccCeeeEEecCEeeCCCC---CCCCccc
Confidence 3589999987666 78999999988 89999999999999999999999999999999999999999983 5799999
Q ss_pred eEEEEEeeEEEEcC-cchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhccccee-----------------e
Q psy1870 87 VHCFTKIEMFGVTL-PEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVE-----------------A 148 (264)
Q Consensus 87 ~reF~~~E~~~f~~-pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE-----------------~ 148 (264)
+|||+|.|+|+|+. +++++.++..+++++.++|++|||+|+++..+.+.+++..+++|... .
T Consensus 172 ~REF~q~d~~~f~~~~~~ad~e~~~~~~~~~~i~~~lGl~~~~~~~~~g~~gg~~s~e~~~l~~~ged~i~~~~~~~~~n 251 (458)
T 2i4l_A 172 GREFLMKDAYSFDVDEAGARKSYNKMFVAYLRTFARMGLKAIPMRAETGPIGGDLSHEFIVLAETGESGVYIDRDVLNLP 251 (458)
T ss_dssp CSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTTCCEEEEECCCCSSCSSCEEEEEEECTTCSEEEEEEGGGGGCC
T ss_pred ccceEEeEEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEccccccCCccchhhhhhhhcCcceEEecccccccC
Confidence 99999999999995 46789999999999999999999999999999999888777664210 0
Q ss_pred ecCcccc--------------cceeE-------ec--CCc------------------cchhhcccceeecCC--C-cee
Q psy1870 149 WMPGRKH--------------WGELS-------SC--SDC------------------TDYQARRLNIRTEDG--K-FAH 184 (264)
Q Consensus 149 w~p~~~~--------------~~Ev~-------s~--s~~------------------~D~qa~rl~i~y~~~--~-~~h 184 (264)
|...+.. +..+. .| ..| +...+.+++.+|.+. + .+-
T Consensus 252 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~rgl~~G~iFelg~~~s~~~g~ry~~~~G~~~p~ 331 (458)
T 2i4l_A 252 VPDENVDYDGDLTPIIKQWTSVYAATEDVHEPARYESEVPEANRLNTRGIEVGQIFYFGTKYSDSMKANVTGPDGTDAPI 331 (458)
T ss_dssp CCCTTCCTTSCCHHHHHHHHHSCEEETTTCCTTHHHHHSCTTTEEEEEEEEEEEEEEEETHHHHHTTCEEECTTSCEEEC
T ss_pred HHHHhccccHhHHHHHhcCchhhhcChhhcccccccCCCCCcCceeeeeeccCcEEEecccccccCCcEEECCCCCEece
Confidence 1000000 00000 01 122 222367789999766 2 222
Q ss_pred EEecccccHhHHHHHHHHhccccCCceeccCCccccccceeeecC
Q psy1870 185 TLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGD 229 (264)
Q Consensus 185 t~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~~ 229 (264)
.++|+|+|++|++++|+|++++++| +.||.|++|++ +.|++.
T Consensus 332 ~~~gfgiGveRli~al~e~~~d~~g-~~~p~~~ap~~--v~vi~~ 373 (458)
T 2i4l_A 332 HGGSYGVGVSRLLGAIIEACHDDNG-IIWPEAVAPFR--VTILNL 373 (458)
T ss_dssp EEEEEEEEHHHHHHHHHHHSEETTE-ECCCTTTCSCS--EEEEES
T ss_pred EEeeecccHHHHHHHHHHhhccccC-CcCCcccCCce--EEEEec
Confidence 2679999999999999999999988 99999999999 556654
No 21
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=100.00 E-value=8.9e-34 Score=278.27 Aligned_cols=130 Identities=15% Similarity=0.230 Sum_probs=119.5
Q ss_pred hhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceee
Q psy1870 8 ALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRV 87 (264)
Q Consensus 8 ~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~ 87 (264)
.||++||+++.. .++||++.|++ +++++|+||+|++++.+++++..||++||+++||+++|||+|.+ +++||+|+
T Consensus 78 ~l~~~sG~~~~~-~~~m~~~~d~~-~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~---~~~Gl~R~ 152 (572)
T 2j3l_A 78 ELWKESGRYETY-GPNLYRLKDRN-DRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKR---SRSGLLRG 152 (572)
T ss_dssp HHHHHHSHHHHS-CTTSCEEECTT-CCEEEECSCCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSS---CCTGGGSC
T ss_pred HHHHhcCCcccc-chheEEEecCC-CCeEEEccccHHHHHHHHHhhccChhhcCHhhheecCeeccCcC---cccCcccc
Confidence 489999998776 88999999887 88999999999999999999999999999999999999999985 38999999
Q ss_pred EEEEEeeEEEEcC-cchHHHHHHHHHHHHHHHHHHhCCceEEEEccCCCcCchhhc
Q psy1870 88 HCFTKIEMFGVTL-PEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYK 142 (264)
Q Consensus 88 reF~~~E~~~f~~-pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~ 142 (264)
|||+|.|+|+||. ++++++++..+++++.++|+.|||+|+++..+++.+|+..++
T Consensus 153 ReF~q~d~~~f~~~~~~~~~e~~~~~~~~~~~~~~lgl~~~~~~~~~g~~g~~~s~ 208 (572)
T 2j3l_A 153 REFIMKDGYSFHADEASLDQSYRDYEKAYSRIFERCGLEFRAIIGDGGAMGGKDSK 208 (572)
T ss_dssp SEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGTCSSEE
T ss_pred ceeEEeeeEEEcCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecccccCCCcccE
Confidence 9999999999999 568999999999999999999999999999888887776544
No 22
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=100.00 E-value=2.7e-34 Score=270.82 Aligned_cols=204 Identities=17% Similarity=0.273 Sum_probs=160.6
Q ss_pred hhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCcee
Q psy1870 7 NALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYR 86 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R 86 (264)
..||++||+++.+ .++||+ .|++ +++++|+||+|++++.+++++..||++||+++||+++|||+|.++ +++||+|
T Consensus 60 ~~l~~~sG~~~~~-~~em~~-~d~~-~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~--p~~Gl~R 134 (401)
T 1evl_A 60 RVLWEKTGHWDNY-KDAMFT-TSSE-NREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSG--SLHGLMR 134 (401)
T ss_dssp HHHHHHHTHHHHS-GGGCCE-EEET-TEEEEECSCSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCGG--GCBTTTB
T ss_pred HHHHHhcCcHhhh-chhhEe-EecC-CceEEEcCCCCHHHHHHHHhhhhhhhhCChhhccccceecCCCCc--ccccccc
Confidence 4689999999665 789999 6766 789999999999999999999999999999999999999999852 6899999
Q ss_pred eEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCC-ceEEEEccCCCcCchhhcccceeeecCcccccce-------
Q psy1870 87 VHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGI-HTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGE------- 158 (264)
Q Consensus 87 ~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lgl-pyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~E------- 158 (264)
+|||+|.|+|+|+++++++++|+++++.+.++|+.||| +|++ .+++++ +....+.+.|.++.+.+.+
T Consensus 135 ~reF~q~d~~~f~~~~~~~~e~~e~i~~~~~~~~~lgl~~~~~-~~~~~~----~~~~~~~~~~~~a~~~~~~~l~~~g~ 209 (401)
T 1evl_A 135 VRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVV-KLSTRP----EKRIGSDEMWDRAEADLAVALEENNI 209 (401)
T ss_dssp CSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHTTTCSCCEE-EEECCC----SSCCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred cCcEEecceEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCceEE-EEecCC----cccCCCHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999 7987 455553 2233344445432211110
Q ss_pred -------------------eEe----cCCcc----chh-hcccceeecCC------C-cee-EEecccccHhHHHHHHHH
Q psy1870 159 -------------------LSS----CSDCT----DYQ-ARRLNIRTEDG------K-FAH-TLNGTACAIPRLLMALVE 202 (264)
Q Consensus 159 -------------------v~s----~s~~~----D~q-a~rl~i~y~~~------~-~~h-t~~gtg~~v~Rll~alLE 202 (264)
+.. .-+|+ ||+ +++++++|.+. + ++| +++| |++|++++|+|
T Consensus 210 ~~~~~~~~~~~y~~~~d~~~~~~~G~~~~~gt~~~d~~l~~~~~~~y~~~~g~~~~p~~~~~~~~G---gieRli~~l~e 286 (401)
T 1evl_A 210 PFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILG---SMERFIGILTE 286 (401)
T ss_dssp CCEEETTCSBTTBCEEEEEEECTTCCEEEEEEEEEESSHHHHTTCCEECTTSCEECCEEEEEEEEE---EHHHHHHHHHH
T ss_pred CceecCCCccccCCCcCeEEEecCCCeEEeeeeeeccccccccCCEEECCCCCCcCcEEEEecCCC---cHHHHHHHHHH
Confidence 110 00233 888 89999999865 2 345 3433 59999999999
Q ss_pred hccccCCceeccCCccccccceeeecCC
Q psy1870 203 THQNQDGTVNIPECLQPFMFNKRIIGDT 230 (264)
Q Consensus 203 ~~~~~~G~i~lP~~LaP~~~~~~~i~~~ 230 (264)
+|+ | .||.+++|++ +.|++..
T Consensus 287 ~~~---~--~~p~~~ap~~--v~vi~~~ 307 (401)
T 1evl_A 287 EFA---G--FFPTWLAPVQ--VVIMNIT 307 (401)
T ss_dssp HHT---T--CCCTTTCSSC--EEEEESS
T ss_pred HhC---C--cCCCCCCCeE--EEEEecC
Confidence 987 4 6999999998 5555543
No 23
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=99.97 E-value=2.8e-32 Score=261.36 Aligned_cols=183 Identities=16% Similarity=0.142 Sum_probs=146.6
Q ss_pred CCceEEeCCchHHHHHHHhccccCCC-CCcceEEEecceec---cCccCCccCCCceeeEEEEEeeEEEEcCcchHHHHH
Q psy1870 33 GNGWCLSGTAEMGIARYLMNQTLPES-QLPKQIAAMSKCYR---AEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQL 108 (264)
Q Consensus 33 ~~~~~L~pTaE~~i~~l~~~~~~syr-~LPl~l~q~s~~fR---~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~s~~~~ 108 (264)
+..+||+|+++++++..|++...|++ +||++++|+|+||| ||+++ ++||+|+|||+|+|+|.||+|+++++++
T Consensus 134 ~~~~~LRPeta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~---~~Gl~R~REF~q~E~~~F~~pe~~~e~~ 210 (454)
T 1g5h_A 134 KTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQT---PSSVTRVGEKTEASLVWFTPTRTSSQWL 210 (454)
T ss_dssp HHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC------------CEEEEEEEEEEEEEECHHHHHHHH
T ss_pred CcceeecccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccC---CCCccccCceehhheEEEeCHhhHHHHH
Confidence 35799999999999988888887777 99999999999999 69963 7999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCc---eEEEEccCCCcCchhhcccceeeecCcccccceeEecCCccchhh------cccceeecC
Q psy1870 109 EQFLQFEESLFGELGIH---TRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQA------RRLNIRTED 179 (264)
Q Consensus 109 ~~~~~~~~~i~~~Lglp---yr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~qa------~rl~i~y~~ 179 (264)
+.+++.+.++|+.|||+ +|..+... +. +..++++|+++|. ++.|+.+|++++||+. .+++++|.+
T Consensus 211 ~~~~~~~~~~~~~lgi~~~~~r~~~~~~-~~---a~~~~~ie~~~p~--g~~e~~g~~~~td~~l~~~~~~s~~~l~y~d 284 (454)
T 1g5h_A 211 DFWLRHRLLWWRKFAMSPSNFSSADCQD-EL---GRKGSKLYYSFPW--GKEPIETLWNLGDQELLHTYPGNVSTIQGRD 284 (454)
T ss_dssp HHHHHHHHHHHHTTCSSGGGEEEEEEEC-TT---SCEEEEEEEEETT--EEEEEEEEEEEESHHHHHHSTTCGGGSCEEE
T ss_pred HHHHHHHHHHHHHcCCCceeEEecCCHH-HH---HhcCCCcEEecCC--CceEEEEecCCCHHHHHhccCCceeeEEEEC
Confidence 99999999999999997 77655322 22 4678999999987 6889999999999975 467999987
Q ss_pred C--C-ceeEEecccccHhHHHHHHHHhccccC------C------ceeccCCccccccceeee
Q psy1870 180 G--K-FAHTLNGTACAIPRLLMALVETHQNQD------G------TVNIPECLQPFMFNKRII 227 (264)
Q Consensus 180 ~--~-~~ht~~gtg~~v~Rll~alLE~~~~~~------G------~i~lP~~LaP~~~~~~~i 227 (264)
. + .+|++. +++|++|+++|+||++.+++ | .++||+||||++ +.|+
T Consensus 285 ~~~~~~P~vi~-~s~Gv~R~i~aile~~~~~~~~~~~~g~d~~r~~l~~P~~lAP~q--V~Ii 344 (454)
T 1g5h_A 285 GRKNVVPCVLS-VSGDVDLGTLAYLYDSFQLAENSFARKKSLQRKVLKLHPCLAPIK--VALD 344 (454)
T ss_dssp TTEEECCEEEE-EEEEHHHHHHHHHHHHEEC------------CCEECCCTTTCSCC--EEEE
T ss_pred CCCcEeeEEEe-CcccHHHHHHHHHHHhcchhhcccccCCcccceeEecCcccCCCe--EEEE
Confidence 6 2 466664 46899999999888754431 2 489999999999 4555
No 24
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.97 E-value=5.4e-33 Score=276.56 Aligned_cols=209 Identities=16% Similarity=0.175 Sum_probs=164.1
Q ss_pred hhhhhhcCCCCCCCCCceEEeecCCCC-CceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCce
Q psy1870 7 NALECNSKINSKGERSQIYHLEPNYYG-NGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVY 85 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~~~~~~-~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~ 85 (264)
..||++||+++.. .++||++.+++ + ++++|+||+|.+++.++++...||++||+++||+|+|||+|.++ +++||+
T Consensus 301 ~~l~~~sG~~d~~-~~~mf~~~d~~-~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~~--~~~GL~ 376 (645)
T 1nyr_A 301 VDLYKTSGHWDHY-QEDMFPPMQLD-ETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASG--AVSGLQ 376 (645)
T ss_dssp THHHHHHTHHHHC-TTSSCCCEEET-TTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTT--TCBTTT
T ss_pred HHHHhhCCCcccc-ccCcceeEecC-CCeEEEeCCCCCHHHHHHHHhhhhhccCCCeEEEEeccEEecCCCc--cccCcc
Confidence 4689999988777 88999998876 7 89999999999999999999999999999999999999999963 689999
Q ss_pred eeEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCC-ceEEEEccCCCcCchhhcccceeeecCccc----------
Q psy1870 86 RVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGI-HTRTLNMGANELGAQAYKKYDVEAWMPGRK---------- 154 (264)
Q Consensus 86 R~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lgl-pyr~v~~~~~dl~~~a~~~ydiE~w~p~~~---------- 154 (264)
|+|||+|.|+|+||+++++.++|.+++..+.++|+.||| +|++ .+++.+++......++.|.|.+...
T Consensus 377 R~ReF~Q~d~~~f~~~~~~~d~~~e~i~~~~~~l~~lGl~~~~~-~l~~~~~~~~e~~~g~~e~~~~~~~~l~~~l~~~g 455 (645)
T 1nyr_A 377 RVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSF-RLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELG 455 (645)
T ss_dssp BCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCCCEEE-EEEECCCCCSSSSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred eeeeEEEccEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCCeEEE-EEeCCCcccchhhcCChHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999 6887 5566554322333334455532210
Q ss_pred ----------c-------------cceeEecC-Cccchh-hcccceeecCC------C-ceeE-EecccccHhHHHHHHH
Q psy1870 155 ----------H-------------WGELSSCS-DCTDYQ-ARRLNIRTEDG------K-FAHT-LNGTACAIPRLLMALV 201 (264)
Q Consensus 155 ----------~-------------~~Ev~s~s-~~~D~q-a~rl~i~y~~~------~-~~ht-~~gtg~~v~Rll~alL 201 (264)
. .+....|. .+.||+ ++||++.|.+. + ++|. +.| +++|++++|+
T Consensus 456 ~~~~~~~~~~~~ygpki~~~~~d~lg~~~~~gtiq~D~~l~~~~d~~Y~~~~g~~~~P~~ih~~~~G---gieR~i~~li 532 (645)
T 1nyr_A 456 LSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVS---TMERFVAFLT 532 (645)
T ss_dssp CCCCCEESCSBTTBCEEEEEECCTTSCCEEEEEEEEESSHHHHTTCCEECTTSCEECCEEEEEEEEE---EHHHHHHHHH
T ss_pred CCeEecCCCCceeCCccceehhhhhCchhhcceEEeecccccccceEEECCCCCccCcEEEEeccCC---cHHHHHHHHH
Confidence 0 01111221 123665 89999999865 2 4563 333 4999999999
Q ss_pred HhccccCCceeccCCccccccceeeecCC
Q psy1870 202 ETHQNQDGTVNIPECLQPFMFNKRIIGDT 230 (264)
Q Consensus 202 E~~~~~~G~i~lP~~LaP~~~~~~~i~~~ 230 (264)
|+|+ | .||.||+|++ +.||+..
T Consensus 533 E~~~---~--~~P~~lap~q--v~vip~~ 554 (645)
T 1nyr_A 533 EETK---G--AFPTWLAPKQ--VQIIPVN 554 (645)
T ss_dssp HHHT---T--CCCTTTCSSC--EEEEESS
T ss_pred HHhc---C--CCCCCCCCce--EEEEEcc
Confidence 9987 4 7999999999 5666543
No 25
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=99.94 E-value=4.2e-27 Score=226.32 Aligned_cols=205 Identities=16% Similarity=0.146 Sum_probs=152.4
Q ss_pred hhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCC---CCcceEEEecceeccCccCCccCCC
Q psy1870 7 NALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPES---QLPKQIAAMSKCYRAEISVVADEKG 83 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr---~LPl~l~q~s~~fR~E~s~g~~~~G 83 (264)
..+|.++|+++.+ .++||++ |++ ++.++|+||+|++++.+++++..||+ +||+++||+++|||+|.++ .++|
T Consensus 79 ~~l~~~sg~~~~~-~~emy~~-d~~-~~~l~LRP~~t~~i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~--~~~G 153 (471)
T 3a32_A 79 TELFKVSGHIEFY-RNNMYLF-DIE-GHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSG--SIYG 153 (471)
T ss_dssp THHHHHTCCCTTG-GGGSEEE-EET-TEEEEECSCSHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGG--GCBT
T ss_pred hHHhhhccCcccc-ccceEEE-ecC-CcEEEEccccHHHHHHHHHhhhhhccccccCCeEEeeccceeccCCCc--cccc
Confidence 3689999987776 8899999 665 78999999999999999999999998 9999999999999999852 2499
Q ss_pred ceeeEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHH-hCC-----ceEEEEccCC------CcCchhhccc-------
Q psy1870 84 VYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGE-LGI-----HTRTLNMGAN------ELGAQAYKKY------- 144 (264)
Q Consensus 84 L~R~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~-Lgl-----pyr~v~~~~~------dl~~~a~~~y------- 144 (264)
|+|+|||+|.|+|+|++++++.+++.+++..+.++|+. ||| +|+++..... ++.+++ ..+
T Consensus 154 l~R~REF~Q~~~e~f~~~~~~~de~~e~i~~~~~~l~~~lGl~~~~~~~~l~i~~~~~~~~~e~~~g~~-~~~d~~~~~l 232 (471)
T 3a32_A 154 LLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLFKLGVSSETFKVRLSMSDKSLIGKEFMGSK-EEWEGAEEAL 232 (471)
T ss_dssp TTBCSEEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHTSCCCCSTTTEEEEEECCCGGGBTTTBCSCH-HHHHHHHHHH
T ss_pred ceeEEEEEECCeEEEcChHHHHHHHHHHHHHHHHHHHHhhCCCcCCCCeEEEEecCCCCcccccccCCH-HHHHHHHHHH
Confidence 99999999999999999999999999999999999999 999 5887654432 111110 001
Q ss_pred ---------------------------ceeeecCc----ccccceeEecCCccchh-hcccceeecC----CC----cee
Q psy1870 145 ---------------------------DVEAWMPG----RKHWGELSSCSDCTDYQ-ARRLNIRTED----GK----FAH 184 (264)
Q Consensus 145 ---------------------------diE~w~p~----~~~~~Ev~s~s~~~D~q-a~rl~i~y~~----~~----~~h 184 (264)
.++..+.. .+...++++ ...|+. +++|+++|.+ .. ++|
T Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~gp~i~~~l~d~~~~l~~~~~~g~--~~lD~~l~r~~d~~Yyt~~~~G~~e~~~i~ 310 (471)
T 3a32_A 233 REAASRINEKYGIDIVELEGEAAFYGPKLDFIMMVEESGVSKEWQMGT--IQFDFNLPRRFRLYDVVREEFGIEEVYIIH 310 (471)
T ss_dssp HHHHHHHHHHHCCEEEEETTCSBTTBCEEEEEEEEESSSCEEEEEEEE--EEEESSHHHHTTHHHHHHHHHCCSCEEEEE
T ss_pred HHHHHHHHHhcCCceEecccchhhCCCccceEEeccHHhhhhhheeee--EEecccccccCCceEeccccCCceeeEEEe
Confidence 01111111 011111111 123443 6789988887 41 344
Q ss_pred EEecccccHhHHHHHHHHhccccCCceeccCCccccccceeeec
Q psy1870 185 TLNGTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIG 228 (264)
Q Consensus 185 t~~gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~ 228 (264)
. .++| |++|+++++||++. | .||.|++|++ +.|++
T Consensus 311 ~-~i~G-gieRli~~lie~~~---g--~~p~~~ap~q--v~Iip 345 (471)
T 3a32_A 311 R-ALLG-SIERFLGVYLEHRR---G--RMPFTLAPIQ--FAVIA 345 (471)
T ss_dssp E-EEEE-EHHHHHHHHHHHTT---T--CCCGGGCSCS--EEEEE
T ss_pred c-cccC-cHHHHHHHHHHHhC---C--CCCCCcCCce--EEEEE
Confidence 2 1232 79999999999986 5 7999999999 45554
No 26
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=99.94 E-value=6.1e-27 Score=234.29 Aligned_cols=130 Identities=24% Similarity=0.267 Sum_probs=110.3
Q ss_pred CCceEEeCCchHHHHHHHhccccC-CCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcchH-------
Q psy1870 33 GNGWCLSGTAEMGIARYLMNQTLP-ESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDS------- 104 (264)
Q Consensus 33 ~~~~~L~pTaE~~i~~l~~~~~~s-yr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~s------- 104 (264)
+...||||...++++..|++...+ |++||+++||+|++||||++ +++||+|+|||+|.|+|+||+|++.
T Consensus 237 ~~~~~LRPEtaqg~f~~f~r~~~~~~~~LP~~~aqiG~~fRnEis---Pr~GLlR~REF~q~d~e~F~~p~~~~~~~y~~ 313 (693)
T 2zt5_A 237 NMPGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEIS---PRSGLIRVREFTMAEIEHFVDPSEKDHPKFQN 313 (693)
T ss_dssp SSEEEECSCSHHHHHTTHHHHHHHTTTCSCEEEEEEEEEECCCSS---CCSGGGSCSEEEEEEEEEEECTTCCCCTTGGG
T ss_pred CcceeeccccchHHHHHHHHHHHHhCcCCCEEEEeecceecCCCC---CCCCCccceeeEEccceEEeCcchhcchhHHH
Confidence 568999999999999777777665 89999999999999999994 6899999999999999999999764
Q ss_pred -----------------------------------HHHHHHHHHHHHHHHHHhCCc---eEEEEccCCCcCchhhcccce
Q psy1870 105 -----------------------------------EKQLEQFLQFEESLFGELGIH---TRTLNMGANELGAQAYKKYDV 146 (264)
Q Consensus 105 -----------------------------------~~~~~~~~~~~~~i~~~Lglp---yr~v~~~~~dl~~~a~~~ydi 146 (264)
.+++.+++..+.+||..|||+ +++......++.+++...+|+
T Consensus 314 v~da~~~~~~~~~~~~~~~~~~~~~~ea~~~g~i~~e~~~~~i~~~~~f~~~lGi~~~~~~~~~~~~~e~a~ya~~~~d~ 393 (693)
T 2zt5_A 314 VADLHLYLYSAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDA 393 (693)
T ss_dssp TTTCEEEEECHHHHHTTCCCEEEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTCCGGGEEEEECCGGGSCTTCSSEEEE
T ss_pred HHHHHHhhhhhhhhccccccccchhhhhhhhcccchHHHHHHHHHHHHHHHHcCcCccEEEEeccCchhhccchhhhhhe
Confidence 367889999999999999996 676666566788889899999
Q ss_pred eeecCcccccceeEecCCccc
Q psy1870 147 EAWMPGRKHWGELSSCSDCTD 167 (264)
Q Consensus 147 E~w~p~~~~~~Ev~s~s~~~D 167 (264)
|+.++. +|.|+..|...++
T Consensus 394 e~~~~~--g~~e~~~~a~r~~ 412 (693)
T 2zt5_A 394 ESKTSY--GWIEIVGCADRSC 412 (693)
T ss_dssp EEEETT--EEEEEEEEECCCS
T ss_pred hhhccC--ChHHHHHHHHHHH
Confidence 988755 5777777665443
No 27
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=99.70 E-value=4e-17 Score=153.89 Aligned_cols=115 Identities=11% Similarity=0.175 Sum_probs=88.9
Q ss_pred hhhhhc--CCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCC-CCCcceEEEecceeccCccCCccCCCc
Q psy1870 8 ALECNS--KINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPE-SQLPKQIAAMSKCYRAEISVVADEKGV 84 (264)
Q Consensus 8 ~l~~~~--G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~sy-r~LPl~l~q~s~~fR~E~s~g~~~~GL 84 (264)
.+|.++ |+++.. .++||++.|++ ++.++|+||++.+++.++++...|| ++||+++|++++|||+|.+. .
T Consensus 47 ~l~~~~~g~~~~~~-~~~m~~~~D~~-g~~~~Lrp~~t~~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E~~~----~-- 118 (420)
T 1qe0_A 47 DLFARGVGDSTDVV-QKEMYTFKDKG-DRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQ----K-- 118 (420)
T ss_dssp HHHCC------------CCEEECHHH-HCCEEECSCSHHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC-----------
T ss_pred HHhhhccCCccchh-hhheEEEEcCC-CCEEEeCCCChHHHHHHHHhccccccCCCCeEEEEecCEeecCCCc----C--
Confidence 578888 777766 88999999877 7899999999999999999988999 99999999999999999632 2
Q ss_pred eeeEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCc-eEEEEcc
Q psy1870 85 YRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIH-TRTLNMG 132 (264)
Q Consensus 85 ~R~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglp-yr~v~~~ 132 (264)
.|+|||+|.|+++|+.+++..+ .+++..+.++|+.|||+ |+++...
T Consensus 119 gR~reF~q~~~e~~~~~~~~~d--~e~i~~~~~~l~~lgl~~~~i~l~~ 165 (420)
T 1qe0_A 119 GRYRQFNQFGVEAIGAENPSVD--AEVLAMVMHIYQSFGLKHLKLVINS 165 (420)
T ss_dssp --CCEEEEEEEEEESCCCHHHH--HHHHHHHHHHHHHTTCCCEEEEEEE
T ss_pred CCcccEEEeeEEEECCCCchhH--HHHHHHHHHHHHHcCCCceEEEEcc
Confidence 5999999999999999876444 67888889999999998 8876543
No 28
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=99.59 E-value=5.8e-15 Score=139.22 Aligned_cols=115 Identities=13% Similarity=0.155 Sum_probs=95.7
Q ss_pred hhhhhc-CCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCcee
Q psy1870 8 ALECNS-KINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYR 86 (264)
Q Consensus 8 ~l~~~~-G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R 86 (264)
.+|.++ |..-.....+||++.|++ ++.++|+|+.+.+++.++.....++++||+|+|+++++||+|.+ ..| |
T Consensus 48 el~~~~~G~~~d~~~~em~~~~D~~-g~~l~Lrpd~t~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e~p----~~g--R 120 (421)
T 1h4v_B 48 QVFEKGVGAATDIVRKEMFTFQDRG-GRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERP----QKG--R 120 (421)
T ss_pred HHhhhccCCcccccccceEEEECCC-CCEEeeCCcchHHHHHHHHhccccccCCCeEEEEecCeecCCCC----CCC--C
Confidence 467777 883333377999999988 89999999999999999987778999999999999999999952 355 9
Q ss_pred eEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCc-eEEEEc
Q psy1870 87 VHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIH-TRTLNM 131 (264)
Q Consensus 87 ~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglp-yr~v~~ 131 (264)
.|||+|.|+++|+.++... -.+++.++.++|++|||+ |+++..
T Consensus 121 ~REf~Q~g~e~~g~~~~~a--d~e~i~~~~~~l~~lgl~~~~i~i~ 164 (421)
T 1h4v_B 121 YRQFHQVNYEALGSENPIL--DAEAVVLLYECLKELGLRRLKVKLS 164 (421)
T ss_pred cccEEEccEEEECCCChhh--hHHHHHHHHHHHHHcCCCceEEEEc
Confidence 9999999999999876422 236788999999999997 777544
No 29
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=99.55 E-value=1.1e-14 Score=138.03 Aligned_cols=113 Identities=16% Similarity=0.093 Sum_probs=93.8
Q ss_pred hhhhh-cCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCcee
Q psy1870 8 ALECN-SKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYR 86 (264)
Q Consensus 8 ~l~~~-~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R 86 (264)
.+|.+ +|+ ...++||++.|++ ++.++|+|+.+.+++.++... .++ +||+|+|+++++||+|.+ ..| |
T Consensus 51 el~~~~~G~---~~~~em~~~~D~~-g~~l~LrPd~t~~~aR~~~~~-~~~-~lP~rl~~~g~vfR~erp----~~g--R 118 (434)
T 1wu7_A 51 DLYRIKSGE---ELLQQTYSFVDKG-GREVTLIPEATPSTVRMVTSR-KDL-QRPLRWYSFPKVWRYEEP----QAG--R 118 (434)
T ss_dssp HHHHTTSCT---TGGGGSCEEECTT-SCEEEECSCSHHHHHHHHTTC-TTC-CSSEEEEECCEEECCCCS----CSS--C
T ss_pred HHhhhccCC---ccccceEEEECCC-CCEEEeCCCChHHHHHHHHhc-CCC-CCCeEEEEEcCeecCCCC----CCC--C
Confidence 56776 688 2366999999987 899999999999999998876 666 899999999999999952 355 9
Q ss_pred eEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCc--eEEEEccCC
Q psy1870 87 VHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIH--TRTLNMGAN 134 (264)
Q Consensus 87 ~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglp--yr~v~~~~~ 134 (264)
.|||+|.|+++|+.++... -.+++.++.++|++|||+ |+++....+
T Consensus 119 ~REF~Q~d~ei~g~~~~~a--d~E~i~~~~~~l~~lgl~~~~~i~l~~~g 166 (434)
T 1wu7_A 119 YREHYQFNADIFGSDSPEA--DAEVIALASSILDRLGLQDIYEIRINSRK 166 (434)
T ss_dssp CSEEEEEEEEEESCCSHHH--HHHHHHHHHHHHHHTTTTTSEEEEEEEHH
T ss_pred ccceEEeeEEEEcCCChHh--hHHHHHHHHHHHHHcCCCCceEEEECChh
Confidence 9999999999999886532 235788999999999997 888765443
No 30
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=99.53 E-value=2.4e-14 Score=135.07 Aligned_cols=115 Identities=16% Similarity=0.159 Sum_probs=92.9
Q ss_pred hhhhhc-CCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCcee
Q psy1870 8 ALECNS-KINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYR 86 (264)
Q Consensus 8 ~l~~~~-G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R 86 (264)
.+|.++ |+.-.....+||++.|++ ++.++|+|+.+.+++.++... .++++||+|+|+++++||+|.+ ..| |
T Consensus 49 el~~~~~G~~~d~~~~em~~~~D~~-g~~l~Lrpd~t~~~aR~~~~~-~~~~~~P~rl~~~g~vfR~e~p----~~g--R 120 (423)
T 1htt_A 49 PLFKRAIGEVTDVVEKEMYTFEDRN-GDSLTLRPEGTAGCVRAGIEH-GLLYNQEQRLWYIGPMFRHERP----QKG--R 120 (423)
T ss_dssp HHHHHHHCSSSHHHHHTCEEEECTT-SCEEEECSCSHHHHHHHHHHH-TCSTTCCEEEEEEEEEECCCCC----CSS--C
T ss_pred HHHhhccCCchhhhhhheEEEEcCC-CCEEEeCCCchHHHHHHHHhc-ccccCCCeEEEEEcCEecCCCC----CCC--c
Confidence 477777 873222256999999988 899999999999999888754 4688999999999999999952 355 9
Q ss_pred eEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCC--ceEEEEcc
Q psy1870 87 VHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGI--HTRTLNMG 132 (264)
Q Consensus 87 ~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lgl--pyr~v~~~ 132 (264)
.|||+|.|+++|+.++... -.+++.++.++|++||| +|+++...
T Consensus 121 ~Ref~Q~d~e~~g~~~~~a--d~e~i~~~~~~l~~lgl~~~~~i~i~~ 166 (423)
T 1htt_A 121 YRQFHQLGCEVFGLQGPDI--DAELIMLTARWWRALGISEHVTLELNS 166 (423)
T ss_dssp CSEEEEEEEEEESCCSHHH--HHHHHHHHHHHHHHHTCGGGCEEEEEE
T ss_pred cceeEEeeEEEECCCCchh--hHHHHHHHHHHHHHCCCCCCcEEEEcC
Confidence 9999999999999876422 23567899999999999 48876544
No 31
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.52 E-value=3e-13 Score=122.39 Aligned_cols=165 Identities=16% Similarity=0.169 Sum_probs=115.2
Q ss_pred hhhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCcee
Q psy1870 7 NALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYR 86 (264)
Q Consensus 7 ~~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R 86 (264)
..+|+++|+++.. ++|.+.+.- +++++|||+.+.++..+++....+ +++|++++++|+|||+|.+ |..|
T Consensus 100 ~~l~~~~g~~~~~---~m~~~~npl-~e~~~LRp~l~p~l~~~~r~~~~~-~~~PlrlfeiG~vFR~E~~------~~~r 168 (288)
T 3dsq_A 100 KSALAKMTIGEDH---PLFSQVFWL-DGKKCLRPMLAPNLYTLWRELERL-WDKPIRIFEIGTCYRKESQ------GAQH 168 (288)
T ss_dssp HHHHHTTSSCC-----CCTTTSCEE-ETTEEECSCSHHHHHHHHHHHTTT-SCSCEEEEEEEEEECSCCS------SSCC
T ss_pred HHHHhhcCCCccc---ccEEeeccc-ccchhhhhcChHHHHHHHHHHHhC-CCCCEEEEEEeeEEecCCC------CCCc
Confidence 4578888886631 333322211 246899999999888877765555 8999999999999999973 3458
Q ss_pred eEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCC-ceEEEEccCCCcCchhhcccceeeecCcccccceeEecCCc
Q psy1870 87 VHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGI-HTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDC 165 (264)
Q Consensus 87 ~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lgl-pyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~ 165 (264)
++||+|.|++.++.+++. .|.++...++.+|+.||+ +|++..- +.+.. ...+|+- .+|.||++|+..
T Consensus 169 ~~EF~qle~~i~g~~~~~--~f~elkg~le~ll~~LGl~~~~~~~~-s~e~~---~~~~~l~------~~~~eig~~Gv~ 236 (288)
T 3dsq_A 169 LNEFTMLNLTELGTPLEE--RHQRLEDMARWVLEAAGIREFELVTE-SSVVY---GDTVDVM------KGDLELASGAMG 236 (288)
T ss_dssp CSEEEEEEEEEETCCGGG--HHHHHHHHHHHHHHHHTCCCCEEEEC-CCCSS---CCCEEEE------ETTEEEEEEEEE
T ss_pred CccEEEEEEEEEcCCchh--hHHHHHHHHHHHHHHcCCCCcEEecC-CcceE---EEEEEEE------eCCEEEEEEEec
Confidence 899999999999987554 388999999999999999 6887653 33322 1233431 247899988722
Q ss_pred cchhhcccceeecCCCceeEEecccccHhHHHHHHH
Q psy1870 166 TDYQARRLNIRTEDGKFAHTLNGTACAIPRLLMALV 201 (264)
Q Consensus 166 ~D~qa~rl~i~y~~~~~~ht~~gtg~~v~Rll~alL 201 (264)
.+...++++|. ..| .|.|++++|++..+.
T Consensus 237 p~vl~~~~gi~-----~~~--~gfglglerl~m~~~ 265 (288)
T 3dsq_A 237 PHFLDEKWEIF-----DPW--VGLGFGLERLLMIRE 265 (288)
T ss_dssp SCTTTTTTTCC-----SCE--EEEEEEHHHHHHHHH
T ss_pred HHHHHHhcCCC-----CCe--EEEEECHHHHHHHHc
Confidence 22222566663 123 367999999987654
No 32
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=99.47 E-value=1.3e-13 Score=132.42 Aligned_cols=114 Identities=12% Similarity=0.189 Sum_probs=93.4
Q ss_pred hhhhhc-CCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCcee
Q psy1870 8 ALECNS-KINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYR 86 (264)
Q Consensus 8 ~l~~~~-G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R 86 (264)
.+|.++ |+......++||++.|+.+++.++|+|+.+.+++.++.....++ +||+|+|+++++||+|.+. . .|
T Consensus 77 el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRPd~t~~~ar~~~~~~~~~-~lP~r~~~~g~vfR~E~~~----~--gR 149 (467)
T 4e51_A 77 PLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAIEHNMLY-DGPKRLWYIGPMFRHERPQ----R--GR 149 (467)
T ss_dssp HHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECSCSHHHHHHHHHHTTTTT-TSCEEEEEEEEEECCCCC---------C
T ss_pred HHhhhccCCcccccccceEEEecCCCCCEEEeCcccHHHHHHHHHHccccc-CCCEEEEEEccEEccCCCC----C--CC
Confidence 477777 88433225699999876425789999999999999999888898 6999999999999999742 2 39
Q ss_pred eEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCC-ceEEEE
Q psy1870 87 VHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGI-HTRTLN 130 (264)
Q Consensus 87 ~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lgl-pyr~v~ 130 (264)
+|||+|.++++|+.++...+ .+++..+.++|+.||| +|++..
T Consensus 150 ~ReF~Q~d~ei~g~~~~~ad--aEvi~l~~~~l~~lGl~~~~i~i 192 (467)
T 4e51_A 150 YRQFHQVGVEALGFAGPDAD--AEIVMMCQRLWEDLGLTGIKLEI 192 (467)
T ss_dssp CSEEEEEEEEEETCCCSHHH--HHHHHHHHHHHHHHTCCCEEEEE
T ss_pred cCceEEEEEEEEeCCChHHH--HHHHHHHHHHHHHcCCCceEEEE
Confidence 99999999999999876443 6899999999999999 577643
No 33
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=99.43 E-value=8.6e-13 Score=122.02 Aligned_cols=112 Identities=14% Similarity=0.139 Sum_probs=87.5
Q ss_pred hhhhhc--CCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCce
Q psy1870 8 ALECNS--KINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVY 85 (264)
Q Consensus 8 ~l~~~~--G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~ 85 (264)
.+|.++ |.+... .++||++.|+. ++.++|+|....+++-++... ++++|+|+|+++++||+|.+ ..|
T Consensus 67 el~~~s~~g~~~~~-~~~my~~~D~~-g~~l~LRpd~T~~~aR~~~~~---~~~~P~rl~y~g~vfR~e~p----~~g-- 135 (344)
T 1z7m_A 67 QLYTALESNGKTFN-QEKMFQFIKHE-GQSITLRYDFTLPLVRLYSQI---KDSTSARYSYFGKIFRKEKR----HKG-- 135 (344)
T ss_dssp HHHHHHHCSSSCCC-TTSCCEEECTT-CCEEEECCCSHHHHHHHHHTC---CSCCCEEEEEEEECCCCCC----------
T ss_pred HHHhhccCCccccc-cccEEEEECCC-CCEEecCCCCcHHHHHHHHhc---CCCCCeEEEEECcEEccCCC----CCC--
Confidence 467765 666555 67999999987 899999999999999888765 77899999999999999963 244
Q ss_pred eeEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCc-eEEEEcc
Q psy1870 86 RVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIH-TRTLNMG 132 (264)
Q Consensus 86 R~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglp-yr~v~~~ 132 (264)
|.|||+|.++++|+.++...+ .+++..+.++|+.||++ |++....
T Consensus 136 R~REF~Q~g~ei~g~~~~~aD--aEvi~l~~~~l~~lgl~~~~i~l~~ 181 (344)
T 1z7m_A 136 RSTENYQIGIELFGESADKSE--LEILSLALQVIEQLGLNKTVFEIGS 181 (344)
T ss_dssp ---CCEEEEEEEESSCHHHHH--HHHHHHHHHHHHHHTCSSEEEEEEE
T ss_pred CcceeEEEEEEEEcCCCcHHH--HHHHHHHHHHHHHCCCCcEEEEECC
Confidence 999999999999998763222 47888999999999996 7765433
No 34
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=99.29 E-value=1.5e-11 Score=114.95 Aligned_cols=116 Identities=13% Similarity=0.099 Sum_probs=87.3
Q ss_pred hhhhhcCCCCCCCC-CceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCC--Cc
Q psy1870 8 ALECNSKINSKGER-SQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEK--GV 84 (264)
Q Consensus 8 ~l~~~~G~~~~~~~-~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~--GL 84 (264)
.+|.++|.. .. .+||++.|+. ++.++|+|....+++-++.... ..+++|+|+|+++++||+|.++ ... +.
T Consensus 68 el~~~~g~~---~~~~~my~~~D~~-g~~l~LRpd~T~~~aR~~~~~~-~~~~~P~r~~y~g~vfR~e~~g--~~~~~~~ 140 (373)
T 3rac_A 68 DTLLRARSP---ESSRDWIRLFDGG-GDAVALRPEMTPSIARMAAPRV-AAGRTPIRWCYCERVYRRTDDP--ASLSWAS 140 (373)
T ss_dssp HHHHTTSCT---TSCCCCCBCCCCS-SSCEEECSSSHHHHHHHHHHHH-HTTCCCCEEEEEEEEEECC------------
T ss_pred HHHhhcCCc---cchhceEEEECCC-CCEEEECCcCHHHHHHHHHhcc-ccCCCCeEEEEEcceEccCCCc--ccccccC
Confidence 467777632 24 6999999987 8999999999999998887643 3478999999999999999742 111 44
Q ss_pred eeeEEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCC-ceEEEEc
Q psy1870 85 YRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGI-HTRTLNM 131 (264)
Q Consensus 85 ~R~reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lgl-pyr~v~~ 131 (264)
-|.|||+|.++++|+.+++.... .+++..+.++|+.||+ +|++...
T Consensus 141 gR~ReF~Q~g~ei~g~~d~~~aD-aEvi~l~~~~l~~lgl~~~~i~l~ 187 (373)
T 3rac_A 141 GKAAESTQVGIERIGEEASVDVD-MDVLRLLHEASAAAGVRHHRIVVS 187 (373)
T ss_dssp --CEEEEEEEEEECSSCCCHHHH-HHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred CccceeEEeeeEEECCCCCHHHH-HHHHHHHHHHHHHcCCCceEEEec
Confidence 59999999999999998543333 4789999999999999 5776443
No 35
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=99.25 E-value=3.4e-11 Score=113.49 Aligned_cols=110 Identities=18% Similarity=0.199 Sum_probs=88.5
Q ss_pred hhhhhcCCCCCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceee
Q psy1870 8 ALECNSKINSKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRV 87 (264)
Q Consensus 8 ~l~~~~G~~~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~ 87 (264)
.+|.++|. .. ..+||++.|++ ++.++|+|....+++-++... ..++++|+|+|+++++||+|.+ ..| |.
T Consensus 55 el~~~~g~--~~-~~~my~f~D~~-g~~l~LRpd~T~~~aR~~~~~-~~~~~~P~r~~y~g~vfR~e~~----~~g--R~ 123 (400)
T 3od1_A 55 ETVGVVSA--IL-DQQLFKLLDQQ-GNTLVLRPDMTAPIARLVASS-LKDRAYPLRLAYQSNVYRAQQN----EGG--KP 123 (400)
T ss_dssp TTHHHHSS--SC-GGGSCEEECTT-SCEEEECSCSHHHHHHHHHHH-CSSSCSCEEEEEEEEEECCCC-------C--CC
T ss_pred HHHhhcCC--cc-ccceEEEECCC-CCEEEECCCCHHHHHHHHHhh-cccCCCCeEEEEEcCEEeCCCC----CCC--CC
Confidence 46777763 22 56999999988 899999999999999887754 4578999999999999999963 233 99
Q ss_pred EEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCC-ceEEEE
Q psy1870 88 HCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGI-HTRTLN 130 (264)
Q Consensus 88 reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lgl-pyr~v~ 130 (264)
|||+|.++++|+.++...+ .+++..+.++|+.||+ +|++..
T Consensus 124 Ref~Q~g~ei~G~~~~~aD--aEvi~l~~~~l~~lgl~~~~i~l 165 (400)
T 3od1_A 124 AEFEQLGVELIGDGTASAD--GEVIALMIAALKRAGLSEFKVAI 165 (400)
T ss_dssp SEEEEEEEEEESCCSHHHH--HHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CccEEeEEEEECCCChHhH--HHHHHHHHHHHHHCCCCceEEEe
Confidence 9999999999998764322 4788999999999999 477644
No 36
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=99.13 E-value=3e-10 Score=108.67 Aligned_cols=100 Identities=18% Similarity=0.221 Sum_probs=81.5
Q ss_pred CCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcC
Q psy1870 21 RSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTL 100 (264)
Q Consensus 21 ~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~ 100 (264)
..+||++.|++ ++.+.|+|....+++-++.... .++++|+|+|+++++||+|.+ ..| |.|||+|.++++|+.
T Consensus 85 ~~~my~f~D~~-g~~l~LRpd~T~~~aR~~~~~~-~~~~~P~r~~y~g~vfR~e~~----~~g--R~ReF~Q~g~ei~G~ 156 (456)
T 3lc0_A 85 TEQMFNFITKG-GHRVALRPEMTPSLARLLLGKG-RSLLLPAKWYSIPQCWRYEAI----TRG--RRREHYQWNMDIVGV 156 (456)
T ss_dssp HHTCEEEECSS-SCEEEECSCSHHHHHHHHHHSC-TTCCSSEEEEECCEEECCCC-----------CCEEEEEEEEEESC
T ss_pred hhceEEEEcCC-CCEEecCCcCHHHHHHHHHhcC-cccCCCEEEEEeccEEecCCC----CCC--CccceEEEEEEEEcC
Confidence 45899999987 8999999999999998887654 478899999999999999963 234 999999999999998
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCC---ceEEEE
Q psy1870 101 PEDSEKQLEQFLQFEESLFGELGI---HTRTLN 130 (264)
Q Consensus 101 pe~s~~~~~~~~~~~~~i~~~Lgl---pyr~v~ 130 (264)
++...+ .+++..+.++|+.||| +|++..
T Consensus 157 ~~~~~D--aEvi~l~~~~l~~lgl~~~~~~i~i 187 (456)
T 3lc0_A 157 KSVSAE--VELVCAACWAMRSLGLSSKDVGIKV 187 (456)
T ss_dssp CSTHHH--HHHHHHHHHHHHHTTCCTTTEEEEE
T ss_pred CChHhh--HHHHHHHHHHHHHcCCCCCceEEEE
Confidence 864322 3788999999999999 476643
No 37
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=99.00 E-value=1.2e-09 Score=103.91 Aligned_cols=98 Identities=17% Similarity=0.106 Sum_probs=74.6
Q ss_pred CCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcC
Q psy1870 21 RSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTL 100 (264)
Q Consensus 21 ~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~ 100 (264)
.++||++.|++ ++.++|+|.-..+++-++. +++.+|+++|+++++||+|. +..|..|.|||+|.++.+|..
T Consensus 69 ~~~~y~f~D~~-g~~l~LRPd~T~~~aR~~~----~~~~~p~k~~y~g~vfR~er----p~~~~gR~Ref~Q~g~ei~G~ 139 (464)
T 4g84_A 69 SKLIYDLKDQG-GELLSLRYDLTVPFARYLA----MNKLTNIKRYHIAKVYRRDN----PAMTRGRYREFYQCDFDIAGN 139 (464)
T ss_dssp --CCCBBCCCS-SCCEEECSCSHHHHHHHHH----HTTCSCEEEEEEEEEECCCC----------CCSEEEEEEEEEESC
T ss_pred cceeEEEECCC-CCEEEeCCcCcHHHHHHHH----hcCCCCceeEEEecceeccC----CccccCccceeeecceeccCC
Confidence 35899999998 8999999988778876654 35678999999999999995 345677999999999999987
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCc-eEE
Q psy1870 101 PEDSEKQLEQFLQFEESLFGELGIH-TRT 128 (264)
Q Consensus 101 pe~s~~~~~~~~~~~~~i~~~Lglp-yr~ 128 (264)
++...... +++..+.++|+.||+. +.+
T Consensus 140 ~~~~~aDa-Evi~l~~~~l~~lgl~~~~i 167 (464)
T 4g84_A 140 FDPMIPDA-ECLKIMCEILSSLQIGDFLV 167 (464)
T ss_dssp CSTTHHHH-HHHHHHHHHHHHHTCCCEEE
T ss_pred ccchhhHH-HHHHHHHHHHHHhCCCCcce
Confidence 65432222 5778888999999996 544
No 38
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=98.98 E-value=1.5e-09 Score=104.98 Aligned_cols=98 Identities=18% Similarity=0.160 Sum_probs=74.4
Q ss_pred CCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcC
Q psy1870 21 RSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTL 100 (264)
Q Consensus 21 ~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~ 100 (264)
.++||++.|++ ++.++|+|.-..+++-++. +++.+|+|+|+++++||+|.++ ..+| |.|||+|.++++|+.
T Consensus 122 ~~~my~f~D~~-g~~l~LRPd~T~~~aR~~~----~~~~~p~k~yyig~vfR~Erp~--~~~G--R~ReF~Q~g~ei~G~ 192 (517)
T 4g85_A 122 SKLIYDLKDQG-GELLSLRYDLTVPFARYLA----MNKLTNIKRYHIAKVYRRDNPA--MTRG--RYREFYQCDFDIAGN 192 (517)
T ss_dssp --CSCBBCCTT-SCCEEECSCSHHHHHHHHH----HTTCSCEEEEEEEEEECCCC-----------CCEEEEEEEEEESC
T ss_pred cceeEEEECCC-CCEEEeCCcCcHHHHHHHH----hCCCCCceeEEEeceEeccCcc--cccC--ccceeeeeceeccCC
Confidence 35799999998 8999999988888886665 3467899999999999999631 2344 999999999999997
Q ss_pred cchHHHHHHHHHHHHHHHHHHhCCc-eEE
Q psy1870 101 PEDSEKQLEQFLQFEESLFGELGIH-TRT 128 (264)
Q Consensus 101 pe~s~~~~~~~~~~~~~i~~~Lglp-yr~ 128 (264)
++...... +++..+.++|+.||+. +.+
T Consensus 193 ~~~~~aDa-Evi~l~~~~l~~lgl~~~~i 220 (517)
T 4g85_A 193 FDPMIPDA-ECLKIMCEILSSLQIGDFLV 220 (517)
T ss_dssp CCTTHHHH-HHHHHHHHHHHHHCCCCEEE
T ss_pred ccchHHHH-HHHHHHHHHHHhhcCCcccc
Confidence 66432222 5788889999999995 554
No 39
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=98.96 E-value=3.4e-09 Score=101.46 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=80.4
Q ss_pred hhhhcCCCCCCCCCc-eEEeecCC--------------CCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceecc
Q psy1870 9 LECNSKINSKGERSQ-IYHLEPNY--------------YGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRA 73 (264)
Q Consensus 9 l~~~~G~~~~~~~~~-ly~i~~~~--------------~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~ 73 (264)
+|.+.| . . ..+ ||++.|+. +++.++|+|....+++-++.... .+..+|+|+|+++++||+
T Consensus 58 ~~~~~G--~-~-~ke~m~~~~d~~~~g~~~~~~~~~~~~g~~l~LRpd~T~~~aR~~~~~~-~~~~~p~r~~y~g~vfR~ 132 (465)
T 3net_A 58 VLQAKG--N-Q-GDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTVPLAAYIARHL-NDLTFPFARYQMDVVFRG 132 (465)
T ss_dssp HHHGGG--C-C---CBEEEEEEEC----------------CCEEECSCSHHHHHHHHHHHG-GGSCSSEEEEECCEEECB
T ss_pred HHhccC--C-C-CccceEEEecccccccccccccccCCCCCEEEeCCCChHHHHHHHHhcc-cccCCCeEEEEeccEEec
Confidence 455557 2 2 246 99998871 26889999999999998887654 467899999999999999
Q ss_pred CccCCccCCCceeeEEEEEeeEEEEcCcc-hHHHHHHHHHHHHHHHHHHhCCc-eEEE
Q psy1870 74 EISVVADEKGVYRVHCFTKIEMFGVTLPE-DSEKQLEQFLQFEESLFGELGIH-TRTL 129 (264)
Q Consensus 74 E~s~g~~~~GL~R~reF~~~E~~~f~~pe-~s~~~~~~~~~~~~~i~~~Lglp-yr~v 129 (264)
|.+ ..| |.|||+|.++.+|+.++ .+.... +++..+.++|+.|||+ |.+.
T Consensus 133 e~~----~~g--r~Ref~Q~g~ei~G~~~~~a~~Da-Evi~l~~~~l~~lgl~~~~i~ 183 (465)
T 3net_A 133 ERA----KDG--RFRQFRQCDIDVVGREKLSLLYDA-QMPAIITEIFEAVNIGDFVIR 183 (465)
T ss_dssp C------------CCEEEEEEEEEECSSCCCHHHHH-HHHHHHHHHHHHHTCSCEEEE
T ss_pred CCC----CCC--CcceeEEeeEEEECCCCccchhhH-HHHHHHHHHHHHcCCCceEEE
Confidence 963 233 99999999999999876 341112 7888899999999995 6654
No 40
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=98.77 E-value=2.1e-08 Score=89.70 Aligned_cols=90 Identities=11% Similarity=-0.030 Sum_probs=72.7
Q ss_pred ecCCCCCceEEeCCchHHHHHHHhccccCCCC-CcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcchHHH
Q psy1870 28 EPNYYGNGWCLSGTAEMGIARYLMNQTLPESQ-LPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEK 106 (264)
Q Consensus 28 ~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~-LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~s~~ 106 (264)
.|+. ++.+.|+|..+.+++ .. ...+++ +|+|++.+|++||+|.+. - |||+|.++++|+.++...+
T Consensus 41 ~d~~-g~~l~LRpd~T~~~a---~~-~~~~~~~~p~R~~y~g~vfR~e~~~------~---Ref~Q~g~ei~g~~~~~~D 106 (275)
T 1usy_A 41 LDRK-GNLFSIREDFTKTVL---NH-RKRYSPDSQIKVWYADFVYRYSGSD------L---VAEYQLGLEKVPRNSLDDS 106 (275)
T ss_dssp EETT-SCEEEECCCHHHHHH---HH-HTTCTTCCCEEEECCEEEEEEETTE------E---EEEEEEEEEEESCCSHHHH
T ss_pred CCCC-CCEEEeCCcChHHHH---HH-HhhcCCCCceEEEEeceEEecCCCC------C---CeeeEeCEEEecCCCchhH
Confidence 4665 889999999999999 22 234777 999999999999999742 1 9999999999999876444
Q ss_pred HHHHHHHHHHHHHHHhCCc-eEEEEccCC
Q psy1870 107 QLEQFLQFEESLFGELGIH-TRTLNMGAN 134 (264)
Q Consensus 107 ~~~~~~~~~~~i~~~Lglp-yr~v~~~~~ 134 (264)
.+++....++|+.||++ |.+ .+++.
T Consensus 107 --aEvi~l~~~~l~~lgl~~~~i-~l~~~ 132 (275)
T 1usy_A 107 --LEVLEIIVESASEFFEGPVIV-EIGHT 132 (275)
T ss_dssp --HHHHHHHHHHHHHHCCSCEEE-EEEET
T ss_pred --HHHHHHHHHHHHHcCCCCeEE-EeCCH
Confidence 78899999999999995 765 44433
No 41
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=98.49 E-value=5.4e-07 Score=81.02 Aligned_cols=105 Identities=18% Similarity=0.269 Sum_probs=78.2
Q ss_pred hhhhcCCCCCC-CCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceee
Q psy1870 9 LECNSKINSKG-ERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRV 87 (264)
Q Consensus 9 l~~~~G~~~~~-~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~ 87 (264)
.|++.|..... ...++|.++ +..+|+||...++...++. ..+..++|+++|++|+|||+|... .-|.
T Consensus 108 ~~~~~~~~~~~p~~~~~~~~~-----~~~~LR~slsp~L~~~l~~-n~~~~~~p~rlfeiG~vFR~E~~~------~~~~ 175 (290)
T 3qtc_A 108 YIERMGIDNDTELSKQIFRVD-----KNFCLRPMLTPNLYNYLRK-LDRALPDPIKIFEIGPCYRKESDG------KEHL 175 (290)
T ss_dssp HHHHTTCCTTSSGGGGCCEET-----TTEEECSCSHHHHHHHHHH-HTTTSCSSEEEEEEEEEECCCSCS------SSCC
T ss_pred HHHhcCCCcCCchhhhheeeC-----CCeeEcccChHHHHHHHHH-hhccCCCCeEEEEEcCEEecCCCC------CcCc
Confidence 45555543322 123567663 4699999999888865543 346678999999999999999621 2278
Q ss_pred EEEEEeeEEEEcCcchHHHHHHHHHHHHHHHHHHhCCceEEE
Q psy1870 88 HCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTL 129 (264)
Q Consensus 88 reF~~~E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v 129 (264)
+||+|.|++.+..... |.++...++.+++.||++|++.
T Consensus 176 ~Ef~ql~~~~~g~~~~----f~elkg~le~ll~~lGl~~~~~ 213 (290)
T 3qtc_A 176 EEFTMLVFWQMGSGCT----RENLESIITDFLNHLGIDFKIV 213 (290)
T ss_dssp SEEEEEEEEEESTTCC----HHHHHHHHHHHHHHHTCCCEEE
T ss_pred chheEEEEEEEcCChH----HHHHHHHHHHHHHHcCCCcEEe
Confidence 9999999999876532 6788899999999999998875
No 42
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=98.17 E-value=1.6e-05 Score=71.65 Aligned_cols=76 Identities=20% Similarity=0.127 Sum_probs=48.2
Q ss_pred CceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCc--cCCccCCCceeeE-EEEEeeEEEE
Q psy1870 22 SQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEI--SVVADEKGVYRVH-CFTKIEMFGV 98 (264)
Q Consensus 22 ~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~--s~g~~~~GL~R~r-eF~~~E~~~f 98 (264)
.++|.+.-- +++++|+...|..+-.+.. + =|.|+|++++|||+|. +. .+ |-+ ||+|.|.+..
T Consensus 58 a~~f~~~~~--~~~~~L~~Spe~~~~~l~~----~---g~~rvf~ig~~FR~E~pq~~----~~--RH~~EFtqle~e~~ 122 (294)
T 1nnh_A 58 MEPAEVEIY--GVKMRLTHSMILHKQLAIA----M---GLKKIFVLSPNIRLESRQKD----DG--RHAYEFTQLDFEVE 122 (294)
T ss_dssp CCCCEEEET--TEEEEECSCSHHHHHHHHH----T---TCCEEEEEEEEECCCCGGGC----SS--SCCSEEEEEEEEEE
T ss_pred ceeEEEEcC--CCCEEeccChHHHHHHHhh----c---CccceEEEEccEeCCCCCCC----CC--ccccceeEEEEEec
Confidence 567876422 4678997544543323222 1 2689999999999997 42 01 556 9999999986
Q ss_pred cCc-chHHHHHHHHH
Q psy1870 99 TLP-EDSEKQLEQFL 112 (264)
Q Consensus 99 ~~p-e~s~~~~~~~~ 112 (264)
..+ ++..+..+.++
T Consensus 123 ~~~~~~l~~~~e~l~ 137 (294)
T 1nnh_A 123 RAKMEDIMRLIERLV 137 (294)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 554 34444444444
No 43
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=98.06 E-value=2.2e-05 Score=75.75 Aligned_cols=146 Identities=16% Similarity=0.152 Sum_probs=90.5
Q ss_pred CceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcchHHHHHHHHHH
Q psy1870 34 NGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQ 113 (264)
Q Consensus 34 ~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~s~~~~~~~~~ 113 (264)
+...||++.-.++...+.......+..|++++++|++||+|... -.++.+|+|+|.+....+ -.|..+..
T Consensus 320 ~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~D------atHlpeFhQlegl~~~~~----v~f~dLKg 389 (508)
T 3l4g_A 320 RKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLD------ATHLAEFHQIEGVVADHG----LTLGHLMG 389 (508)
T ss_dssp TBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCC------SSSCSEEEEEEEEEEEES----CCHHHHHH
T ss_pred ccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCC------CCcCCeEEEEEEEEECCC----CCHHHHHH
Confidence 46899987776666555432222456899999999999999621 125678999999876433 23667778
Q ss_pred HHHHHHHHhCC-ceEEEEccCCCcCchhhcccceeeecCcccccceeEecCCccchhhcccceeecCCCceeEEeccccc
Q psy1870 114 FEESLFGELGI-HTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDGKFAHTLNGTACA 192 (264)
Q Consensus 114 ~~~~i~~~Lgl-pyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~qa~rl~i~y~~~~~~ht~~gtg~~ 192 (264)
..+.+++.||+ .+|+.. +-.-. ..-.+.+.++.++.++|.||..|.-.---..+.++|. . -+.....|++
T Consensus 390 ~Le~~l~~lG~~~~rfrp--s~fPf--tePS~ev~i~~~G~~~W~EIGg~G~vhP~VL~~~Gip---e--~~~v~AfgLg 460 (508)
T 3l4g_A 390 VLREFFTKLGITQLRFKP--AYNPY--TEPSMEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGLP---E--NVSVIAWGLS 460 (508)
T ss_dssp HHHHHHHTTTCCCCEEEE--CCCTT--CSSEEEEEECCSTTSSCEEEEEEECCCHHHHGGGTCC---T--TEEEEEEEEE
T ss_pred HHHHHHHHcCCcceEeec--cCCCC--CCCeEEEEEEECCccceEEEEeeeeEcHHHHHHCCCC---C--CceEEEEEec
Confidence 88889999998 466432 21110 0011233444455557999987753221124567662 0 0234567889
Q ss_pred HhHHHH
Q psy1870 193 IPRLLM 198 (264)
Q Consensus 193 v~Rll~ 198 (264)
++|++.
T Consensus 461 LeRLam 466 (508)
T 3l4g_A 461 LERPTM 466 (508)
T ss_dssp SHHHHT
T ss_pred HHHHHH
Confidence 999854
No 44
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=97.66 E-value=0.00066 Score=62.66 Aligned_cols=144 Identities=17% Similarity=0.155 Sum_probs=85.5
Q ss_pred CceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcchHHHHHHHHHH
Q psy1870 34 NGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQ 113 (264)
Q Consensus 34 ~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~s~~~~~~~~~ 113 (264)
+..+||.+....+...+.. ...|++++++|++||+|.. +.. ...||+|+|.+....+-+ |..+..
T Consensus 171 ~~~vLRt~tsp~llr~l~~-----~~~piriFEiGrVFR~d~~---d~t---H~pEF~qlegl~~g~~v~----f~dLKg 235 (350)
T 1b7y_A 171 GRLLLRTHTSPMQVRYMVA-----HTPPFRIVVPGRVFRFEQT---DAT---HEAVFHQLEGLVVGEGIA----MAHLKG 235 (350)
T ss_dssp SCEEECSSSTHHHHHHHHH-----CCSSEEEEEEEEEECCCCC---CSS---CCSEEEEEEEEEEETTCC----HHHHHH
T ss_pred ccceeeccchHHHHHHHHh-----cCCCeeEEEeeeEEECCCC---CCC---CCChhHEEEEEEECCCCC----HHHHHH
Confidence 5678998777776655544 4689999999999998751 111 337999999999876322 667777
Q ss_pred HHHHHHHHh-CCc--eEEEEccCCCcCchhhcccceeeecCcccccceeEecCCccchhhccc-------ceeecCCCce
Q psy1870 114 FEESLFGEL-GIH--TRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRL-------NIRTEDGKFA 183 (264)
Q Consensus 114 ~~~~i~~~L-glp--yr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~qa~rl-------~i~y~~~~~~ 183 (264)
..+.+++.| |++ ++... +..-...-+.+.| +++...++|.||..|.-.---..+.+ +|.-... .
T Consensus 236 ~le~ll~~lfG~~~~~r~rp--s~fPft~Ps~e~~--i~~~~~g~w~eIg~~G~VhP~Vl~~~~~~~~~~gid~~~~--~ 309 (350)
T 1b7y_A 236 AIYELAQALFGPDSKVRFQP--VYFPFVEPGAQFA--VWWPEGGKWLELGGAGMVHPKVFQAVDAYRERLGLPPAYR--G 309 (350)
T ss_dssp HHHHHHHHHSCSSCCEEEEE--CCBTTEEEEEEEE--EEETTTTEEEEEEEEEEECHHHHHHHHHHHHHTTCCCCCT--T
T ss_pred HHHHHHHhhcCCCceEEEec--CCCCCCCCccEEE--EEEEeCCCeEEEEEEEEEeHHHHHhhccccccCCCCCccc--c
Confidence 788888887 864 55432 2111111122333 33322346888887652211113344 6631001 1
Q ss_pred eEEecccccHhHHHH
Q psy1870 184 HTLNGTACAIPRLLM 198 (264)
Q Consensus 184 ht~~gtg~~v~Rll~ 198 (264)
+.....|++++|+..
T Consensus 310 ~~~~afglglerl~m 324 (350)
T 1b7y_A 310 VTGFAFGLGVERLAM 324 (350)
T ss_dssp CEEEEEEEEHHHHHH
T ss_pred ceEEEEEEeHHHHHH
Confidence 233467888999854
No 45
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=97.46 E-value=0.0015 Score=63.30 Aligned_cols=148 Identities=16% Similarity=0.194 Sum_probs=92.6
Q ss_pred ceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcchHHHHHHHHHHH
Q psy1870 35 GWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQF 114 (264)
Q Consensus 35 ~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~s~~~~~~~~~~ 114 (264)
...||++--.++....+. ..+.+..|++++++|++||+|..- ..+ +.+||.|.++.....+.+ |..+...
T Consensus 180 ~svLRTsLlPgLL~~lr~-N~~r~~~pvrLFEIG~VFr~d~~~---d~t--h~~Ef~qLagli~G~~vd----f~dLKgi 249 (534)
T 2du3_A 180 TLTLRSHMTTGWFITLSH-IADKLPLPIKLFSIDRCFRREQGE---DAT--RLYTYFSASCVLVDEELS----VDDGKAV 249 (534)
T ss_dssp EEEECSSHHHHHHHHHHT-TTTTSCSSEEEEEEEEEECCCTTC---SSS--CCSEEEEEEEEEECSSCC----HHHHHHH
T ss_pred ccccCccchhhHHHHHHH-HHhCCCCCeeEEEEeeEEecCccc---ccc--ccceeeEEEEEEECCCCC----HHHHHHH
Confidence 478999887777755543 335668999999999999976410 111 448999999998765333 5677888
Q ss_pred HHHHHHHhCCc-eEEEEccCCC-cCchhhcccceeeecCcc--------cccceeEecCCccchhhcccceeecCCCcee
Q psy1870 115 EESLFGELGIH-TRTLNMGANE-LGAQAYKKYDVEAWMPGR--------KHWGELSSCSDCTDYQARRLNIRTEDGKFAH 184 (264)
Q Consensus 115 ~~~i~~~Lglp-yr~v~~~~~d-l~~~a~~~ydiE~w~p~~--------~~~~Ev~s~s~~~D~qa~rl~i~y~~~~~~h 184 (264)
.+.+++.||+. +++....... ..+. ..+..+.++.+.. ++|.||+.|.-..--..+.+++.+
T Consensus 250 lE~LL~~LGi~~~r~~~~~~~~~~yhP-gt~aeI~v~~~~~~g~~~~~~~gW~eIG~~G~vhP~VL~~~gi~~------- 321 (534)
T 2du3_A 250 AEALLRQFGFENFRFRKDEKRSKYYIP-DTQTEVFAFHPKLVGSSTKYSDGWIEIATFGIYSPTALAEYDIPY------- 321 (534)
T ss_dssp HHHHHGGGTCCEEEEEECTTCCTTBCT-TTCEEEEEEEEEEETCSSSCTEEEEEEEEEEEBCHHHHHTTTCCS-------
T ss_pred HHHHHHHcCCCeEEEEECCCCcccccC-CeEEEEEEEeccccccccccCCCCEEEEEEEEECHHHHHHcCCCC-------
Confidence 89999999995 7765321110 0111 1224555554421 357888776532111245677742
Q ss_pred EEecccccHhHHHHHH
Q psy1870 185 TLNGTACAIPRLLMAL 200 (264)
Q Consensus 185 t~~gtg~~v~Rll~al 200 (264)
.....|++++|+...+
T Consensus 322 ~v~afeLgLErLaMl~ 337 (534)
T 2du3_A 322 PVMNLGLGVERLAMIL 337 (534)
T ss_dssp CEEEEEEEHHHHHHHH
T ss_pred cEEEEEecHHHHHHhh
Confidence 2346678899986543
No 46
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=96.89 E-value=0.0052 Score=56.11 Aligned_cols=141 Identities=15% Similarity=0.117 Sum_probs=80.9
Q ss_pred ceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcchHHHHHHHHHHH
Q psy1870 35 GWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQF 114 (264)
Q Consensus 35 ~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~s~~~~~~~~~~ 114 (264)
..+||.+.-..+...+. ++..|++++++|++||++.. .+ .+.+|+|+|......+-+ |..+...
T Consensus 163 ~~vLRThtsp~~lr~l~-----~~~~pirifeiGrVyR~d~d---~t----h~p~fhqlegl~v~~~v~----f~dLKg~ 226 (327)
T 3pco_A 163 TRLLRTQTSGVQIRTMK-----AQQPPIRIIAPGRVYRNDYD---QT----HTPMFHQMEGLIVDTNIS----FTNLKGT 226 (327)
T ss_dssp SCEECSCTHHHHHHHHT-----TCCSSCCBCCEECCBCSCCB---TT----BCSBCCEEEEEEEETTCC----HHHHHHH
T ss_pred CceecccCCHHHHHHHH-----hCCCCeeEEeeccEEecCCC---cc----cCCcccEEEEEEECCCCC----HHHHHHH
Confidence 45788766555554443 35789999999999999741 11 334688888776543322 5666677
Q ss_pred HHHHHHHh---CCceEEEEccCCCcCchhhcccceeeecCcccccceeEecCCccchhhcccceeecCCCceeEEecccc
Q psy1870 115 EESLFGEL---GIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDGKFAHTLNGTAC 191 (264)
Q Consensus 115 ~~~i~~~L---glpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~qa~rl~i~y~~~~~~ht~~gtg~ 191 (264)
.+.+++.| ++.+|.. ++-.-...-+.+ +++++. .++|.||..|.-.----.+.++|. + -.++....|+
T Consensus 227 Le~~l~~lfg~~~~vr~r--ps~fPftePs~e--adI~~~-~G~w~EIgg~G~VHP~Vl~~~gid---~-~~~~g~AFgl 297 (327)
T 3pco_A 227 LHDFLRNFFEEDLQIRFR--PSYFPFTEPSAE--VDVMGK-NGKWLEVLGCGMVHPNVLRNVGID---P-EVYSGFAFGM 297 (327)
T ss_dssp HHHHHHHHHCSCSEEEEE--EECCTTEEEEEE--EEEECS-SSCEEEEEEEEEECHHHHHTTTCC---T-TTCEEEEEEE
T ss_pred HHHHHHHHhCCCceEEEe--cCcCCCCCCcEE--EEEEEe-CCCeEEEEEEEEECHHHHHHcCCC---C-ccceEEEEEe
Confidence 77777777 4666542 222111111223 334442 356899988753211123455653 1 1123457788
Q ss_pred cHhHHHHHH
Q psy1870 192 AIPRLLMAL 200 (264)
Q Consensus 192 ~v~Rll~al 200 (264)
+++|+....
T Consensus 298 gleRlaml~ 306 (327)
T 3pco_A 298 GMERLTMLR 306 (327)
T ss_dssp EHHHHHHHH
T ss_pred chHHHHHHH
Confidence 999985543
No 47
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=96.66 E-value=0.0071 Score=57.17 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=48.0
Q ss_pred CCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeE-EEEEeeEEEEc
Q psy1870 21 RSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVH-CFTKIEMFGVT 99 (264)
Q Consensus 21 ~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~r-eF~~~E~~~f~ 99 (264)
..++|.+.- . +++++|+-..|..+-. +.. . +-++||+++|||+|.+. .+ |-+ ||+|.|.+...
T Consensus 169 ~~~~f~~~~-~-~~~~~L~~Spql~~~~-~~~---g----~~rvf~ig~~FR~E~~~----~~--RH~pEFtqle~e~~~ 232 (429)
T 1wyd_A 169 GAQLFPVIY-F-GKEAFLAQSPQLYKEL-MAG---V----VERVFEVAPAWRAEESD----TP--FHLAEFISMDVEMAF 232 (429)
T ss_dssp TCCCCEEEE-T-TEEEEECSCCHHHHHH-HHH---H----HSEEEEEEEEECCCCCC----SS--SCCSEEEEEEEEEET
T ss_pred CceeEEEec-C-CceEEecCCcHHHHHH-HHh---C----cCceEEEcccccccCCc----cc--cccceeeEeeeeecC
Confidence 457888753 2 5679996444443222 221 1 67999999999999742 11 555 99999999854
Q ss_pred Cc-chHHHHHHHHH
Q psy1870 100 LP-EDSEKQLEQFL 112 (264)
Q Consensus 100 ~p-e~s~~~~~~~~ 112 (264)
.+ ++..+..+.++
T Consensus 233 ~~~~dlm~~~e~ll 246 (429)
T 1wyd_A 233 ADYNDVMQLLEKIL 246 (429)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44 44444444444
No 48
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=96.64 E-value=0.005 Score=58.26 Aligned_cols=76 Identities=17% Similarity=0.128 Sum_probs=48.4
Q ss_pred CCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeE-EEEEeeEEEEc
Q psy1870 21 RSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVH-CFTKIEMFGVT 99 (264)
Q Consensus 21 ~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~r-eF~~~E~~~f~ 99 (264)
..++|.+.- . +++++|+ +|.+-...++. + -|.++||+++|||+|.+. .+ |-+ ||+|.|.+...
T Consensus 170 ~~~~f~~~~-~-~~~~~Lr-~Spel~~~~~~----~---g~~rvf~ig~~FR~E~~~----~~--RH~pEFtqle~e~~~ 233 (434)
T 1x54_A 170 GATLFKLKY-F-DKYAYLS-QSAQLYLEAAI----F---GLEKVWSLTPSFRAEKSR----TR--RHLTEFWHLELEAAW 233 (434)
T ss_dssp GGGCCEEEE-T-TEEEEEC-SCSHHHHHHHH----H---HHSEEEEEEEEECCCCCC----CS--SCCSEEEEEEEEEET
T ss_pred CceeEEEee-c-CCcEEec-cChHHHHHHHh----c---CccceEEEecceecCCCC----Cc--ccccEEEEeeEEEcC
Confidence 347787742 2 5678999 55444332221 1 278999999999999742 11 455 99999999864
Q ss_pred Cc-chHHHHHHHHH
Q psy1870 100 LP-EDSEKQLEQFL 112 (264)
Q Consensus 100 ~p-e~s~~~~~~~~ 112 (264)
.+ ++..+..+.++
T Consensus 234 ~~~~dlm~~~e~ll 247 (434)
T 1x54_A 234 MDLWDIMKVEEELV 247 (434)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 44 45544444444
No 49
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.62 E-value=0.043 Score=54.01 Aligned_cols=149 Identities=15% Similarity=0.222 Sum_probs=89.5
Q ss_pred CceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcchHHHHHHHHHH
Q psy1870 34 NGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQ 113 (264)
Q Consensus 34 ~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~s~~~~~~~~~ 113 (264)
+..+||++.-.++....+. ....++.|++++++|++||++..- +.. ...||.|.++.....+-+ |..+..
T Consensus 198 ~~sVLRTsLlPGLL~~vr~-N~~R~~~pvRLFEIGrVFR~D~~l--Dat---h~~Ef~qLeGlv~G~~vd----F~DLKG 267 (648)
T 2odr_B 198 SKLTLRSHMTSGWFLTVSD-LMNKKPLPFKLFSIDRCFRREQKE--DKS---HLMTYHSASCAIAGEGVD----INDGKA 267 (648)
T ss_dssp CSEEECCCTHHHHHHHHHH-HTTTSCSCEEEEEEEEEECCCSCC--CSS---CCSEEEEEEEEEECTTCC----HHHHHH
T ss_pred ccCcccccchhhHHHHHHH-HHhcCCCCeEEEEEeeEEecCccc--ccc---CCCcceEEEEEEECCCCC----HHHHHH
Confidence 3568998877766644432 234568999999999999976410 111 237999999988875322 677888
Q ss_pred HHHHHHHHhCC-ceEEEEccC-CCcCchhhcccceeeecCcccccceeEecCCccchhhcccceeecCCCceeEEecccc
Q psy1870 114 FEESLFGELGI-HTRTLNMGA-NELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDGKFAHTLNGTAC 191 (264)
Q Consensus 114 ~~~~i~~~Lgl-pyr~v~~~~-~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~qa~rl~i~y~~~~~~ht~~gtg~ 191 (264)
..+.+++.||+ .+++..... ....++ -.+..+.+..|+.++|.||..|--.---..+.++|... ....++
T Consensus 268 vLE~LL~~LGi~~vrfrpse~~~p~yhP-GreAEI~v~~~g~~GW~EIG~~GeVHP~VLk~~GId~~-------V~AFEL 339 (648)
T 2odr_B 268 IAEGLLSQFGFTNFKFIPDEKKSKYYTP-ETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVP-------VMNLGL 339 (648)
T ss_dssp HHHHHHHTTTCCCEEEEECTTCCTTBCT-TCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSC-------EEEEEE
T ss_pred HHHHHHHHcCCCeEEEEECCCCCcCcCC-ceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCCCCC-------EEEEEE
Confidence 88999999998 476653210 111111 11233333333322578887764221112456777321 246678
Q ss_pred cHhHHHHHH
Q psy1870 192 AIPRLLMAL 200 (264)
Q Consensus 192 ~v~Rll~al 200 (264)
+++|++...
T Consensus 340 gLErLaml~ 348 (648)
T 2odr_B 340 GVERLAMIS 348 (648)
T ss_dssp EHHHHHHHH
T ss_pred eHHHHHHHh
Confidence 899987544
No 50
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.60 E-value=0.045 Score=53.99 Aligned_cols=149 Identities=15% Similarity=0.222 Sum_probs=89.5
Q ss_pred CceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcchHHHHHHHHHH
Q psy1870 34 NGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQ 113 (264)
Q Consensus 34 ~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~s~~~~~~~~~ 113 (264)
+..+||++.-.++....+. ....++.|++++++|++||++..- +.. ...||.|.++.....+-+ |..+..
T Consensus 198 ~~sVLRTSLlPGLL~~lr~-N~~R~~~pvRLFEIGrVFR~D~~l--Dat---h~~Ef~qLeGlv~G~~vd----F~DLKG 267 (665)
T 2odr_A 198 SKLTLRSHMTSGWFLTVSD-LMNKKPLPFKLFSIDRCFRREQKE--DKS---HLMTYHSASCAIAGEGVD----INDGKA 267 (665)
T ss_dssp CSEEECCCTHHHHHHHHHH-HTTTSCSCEEEEEEEEEECCCSCC--CSS---CCSEEEEEEEEEECTTCC----HHHHHH
T ss_pred ccCcccccchhhHHHHHHH-HHhcCCCCeEEEEEeeEEecCccc--ccc---CCCcceEEEEEEECCCCC----HHHHHH
Confidence 3568998877766644432 234568999999999999976410 111 237999999988875322 677888
Q ss_pred HHHHHHHHhCC-ceEEEEccC-CCcCchhhcccceeeecCcccccceeEecCCccchhhcccceeecCCCceeEEecccc
Q psy1870 114 FEESLFGELGI-HTRTLNMGA-NELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDGKFAHTLNGTAC 191 (264)
Q Consensus 114 ~~~~i~~~Lgl-pyr~v~~~~-~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~qa~rl~i~y~~~~~~ht~~gtg~ 191 (264)
..+.+++.||+ .+++..... ....++ -.+..+.+..|+.++|.||..|--.---..+.++|... ....++
T Consensus 268 vLE~LL~~LGi~~vrfrpse~~~p~yhP-GreAEI~V~~~g~~GW~EIG~~GeVHPeVLk~~GId~~-------V~AFEL 339 (665)
T 2odr_A 268 IAEGLLSQFGFTNFKFIPDEKKSKYYTP-ETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVP-------VMNLGL 339 (665)
T ss_dssp HHHHHHHTTTCCCEEEEECTTCCTTBCT-TCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSC-------EEEEEE
T ss_pred HHHHHHHHcCCCeEEEEECCCCCCCcCC-ceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCCCCC-------EEEEEE
Confidence 88999999998 476653210 111111 11233333333322578887764221112456777321 246678
Q ss_pred cHhHHHHHH
Q psy1870 192 AIPRLLMAL 200 (264)
Q Consensus 192 ~v~Rll~al 200 (264)
+++|++...
T Consensus 340 gLErLaml~ 348 (665)
T 2odr_A 340 GVERLAMIS 348 (665)
T ss_dssp EHHHHHHHH
T ss_pred eHHHHHHHh
Confidence 899987544
No 51
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.58 E-value=0.047 Score=53.96 Aligned_cols=149 Identities=15% Similarity=0.222 Sum_probs=89.3
Q ss_pred CceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcchHHHHHHHHHH
Q psy1870 34 NGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQ 113 (264)
Q Consensus 34 ~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~s~~~~~~~~~ 113 (264)
+..+||++.-.++....+. ....++.|++++++|++||++..- +.. ...||.|.++.....+-+ |..+..
T Consensus 198 ~~sVLRTSLlPGLL~~vr~-N~~R~~~pvRLFEIGrVFR~D~~l--Dat---h~~Ef~qLeGlv~G~~vD----F~DLKG 267 (685)
T 2odr_D 198 SKLTLRSHMTSGWFLTVSD-LMNKKPLPFKLFSIDRCFRREQKE--DKS---HLMTYHSASCAIAGEGVD----INDGKA 267 (685)
T ss_dssp CSEEECCCTHHHHHHHHHH-HTTTSCSCEEEEEEEEEECCCSCC--CSS---CCSEEEEEEEEEECTTCC----HHHHHH
T ss_pred ccCcccccchhhHHHHHHH-HHhCCCCCeEEEEeccEEecCccc--ccc---CCCcceEEEEEEECCCCC----HHHHHH
Confidence 3568998877766644432 234568899999999999976410 111 237999999988876322 677888
Q ss_pred HHHHHHHHhCC-ceEEEEccC-CCcCchhhcccceeeecCcccccceeEecCCccchhhcccceeecCCCceeEEecccc
Q psy1870 114 FEESLFGELGI-HTRTLNMGA-NELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDGKFAHTLNGTAC 191 (264)
Q Consensus 114 ~~~~i~~~Lgl-pyr~v~~~~-~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~qa~rl~i~y~~~~~~ht~~gtg~ 191 (264)
..+.+++.||+ .+++..... ....++ -.+..+.+..|+.++|.||..|--.---..+.++|... ....++
T Consensus 268 vLE~LL~~LGi~~vrfrpse~~~p~yHP-GreAEI~V~~~g~~GW~EIG~~GeVHPeVLk~~GId~~-------V~AFEL 339 (685)
T 2odr_D 268 IAEGLLSQFGFTNFKFIPDEKKSKYYTP-ETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVP-------VMNLGL 339 (685)
T ss_dssp HHHHHHHTTTCCCEEEEECTTCCTTBCT-TCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSC-------EEEEEE
T ss_pred HHHHHHHHcCCCeEEEEECCCCCCCcCC-ceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCCCCC-------EEEEEE
Confidence 88999999998 476653210 111111 11233333333322578887764221112456777321 246678
Q ss_pred cHhHHHHHH
Q psy1870 192 AIPRLLMAL 200 (264)
Q Consensus 192 ~v~Rll~al 200 (264)
+++|++...
T Consensus 340 gLErLamlk 348 (685)
T 2odr_D 340 GVERLAMIS 348 (685)
T ss_dssp EHHHHHHHH
T ss_pred eHHHHHHHh
Confidence 899987544
No 52
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.53 E-value=0.046 Score=54.19 Aligned_cols=148 Identities=15% Similarity=0.221 Sum_probs=88.7
Q ss_pred ceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcchHHHHHHHHHHH
Q psy1870 35 GWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQF 114 (264)
Q Consensus 35 ~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~s~~~~~~~~~~ 114 (264)
..+||++.-.++....+. ....++.|++++++|++||++..- +.. ...||.|.++.....+-+ |..+...
T Consensus 199 ~sVLRTSLlPGLL~~vr~-N~~R~~~pvRLFEIGrVFR~D~~l--Dat---h~~EfhqLeGlv~G~~vD----F~DLKGv 268 (701)
T 2odr_C 199 KLTLRSHMTSGWFLTVSD-LMNKKPLPFKLFSIDRCFRREQKE--DKS---HLMTYHSASCAIAGEGVD----INDGKAI 268 (701)
T ss_dssp EEEECCCTHHHHHHHHHH-HTTTSCSCEEEEEEEEEECCCSCC--CSS---CCSEEEEEEEEEECTTCC----HHHHHHH
T ss_pred cCcccccchhhHHHHHHH-HHhCCCCCeEEEEEeeEEccCccc--ccc---CCCcceEEEEEEECCCCC----HHHHHHH
Confidence 468888777766544432 234568999999999999976410 111 237999999988875322 6778888
Q ss_pred HHHHHHHhCC-ceEEEEccC-CCcCchhhcccceeeecCcccccceeEecCCccchhhcccceeecCCCceeEEeccccc
Q psy1870 115 EESLFGELGI-HTRTLNMGA-NELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDGKFAHTLNGTACA 192 (264)
Q Consensus 115 ~~~i~~~Lgl-pyr~v~~~~-~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~qa~rl~i~y~~~~~~ht~~gtg~~ 192 (264)
.+.+++.||+ .+++..... ....++ -.+..+.+..|+.++|.||..|--.---..+.++|... ....+++
T Consensus 269 LE~LL~~LGi~~vrfrpse~~~p~yHP-GreAEI~V~~~g~~GW~EIG~~GeVHPeVLk~~GId~~-------V~AFELg 340 (701)
T 2odr_C 269 AEGLLSQFGFTNFKFIPDEKKSKYYTP-ETQTEVYAYHPKLKEWLEVATFGVYSPVALSKYGIDVP-------VMNLGLG 340 (701)
T ss_dssp HHHHHHTTTCCCEEEEECTTCCTTBCT-TCCEEEEEEETTTTEEEEEEEEEEBCHHHHHHTTCCSC-------EEEEEEE
T ss_pred HHHHHHHcCCCeEEEEECCCCCCCcCC-ceEEEEEEecCCCCCCEEEEEEeEECHHHHHHcCCCCC-------EEEEEEe
Confidence 8999999998 476653210 111111 11233333333322578887764221112456777321 2466788
Q ss_pred HhHHHHHH
Q psy1870 193 IPRLLMAL 200 (264)
Q Consensus 193 v~Rll~al 200 (264)
++|++...
T Consensus 341 LErLamlk 348 (701)
T 2odr_C 341 VERLAMIS 348 (701)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99987544
No 53
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=96.50 E-value=0.028 Score=54.60 Aligned_cols=149 Identities=15% Similarity=0.225 Sum_probs=89.2
Q ss_pred ceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcchHHHHHHHHHHH
Q psy1870 35 GWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQF 114 (264)
Q Consensus 35 ~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~s~~~~~~~~~~ 114 (264)
..+||++.-.++....+. ....++.|++++++|++||++... +.. +.+||.|.++.....+- .|..+...
T Consensus 192 ~svLRTsLlPGLL~~vr~-N~~r~~~pvrlFEiGrVFr~D~~~--d~t---h~~ef~qLaglv~G~~v----dF~DLKG~ 261 (549)
T 2du7_A 192 TLTLRSHMTSGWFITLSS-LIKKRKLPLKLFSIDRCFRREQRE--DRS---HLMSYHSASCVVVGEDV----SVDDGKVV 261 (549)
T ss_dssp EEECCSTTHHHHHHHHHT-TTTTSCSSEEEEEEEEECCCCSSC--SSS---CCSCEEEEEEEEECTTC----CHHHHHHH
T ss_pred ccccccccchhHHHHHHH-HHhcCCCCeEEEEEeeEEecCCcc--cCc---CCCcceEEEEEEECCCC----CHHHHHHH
Confidence 468888877766654443 234568999999999999976410 111 34899999999887642 27778888
Q ss_pred HHHHHHHhCC-ceEEEEccC-CCcCchhhcccceeeecCcccccceeEecCCccchhhcccceeecCCCceeEEeccccc
Q psy1870 115 EESLFGELGI-HTRTLNMGA-NELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDGKFAHTLNGTACA 192 (264)
Q Consensus 115 ~~~i~~~Lgl-pyr~v~~~~-~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D~qa~rl~i~y~~~~~~ht~~gtg~~ 192 (264)
.+.+++.||+ .+++..... ....++ -.+..+.+..++.++|.||+.|.-.----.+.+++... ....+++
T Consensus 262 Le~ll~~LGi~~~rfrps~~~~p~yhP-Gr~AeI~v~~~g~~gw~eIG~~GeVHP~VLk~~gId~~-------v~aFELg 333 (549)
T 2du7_A 262 AEGLLAQFGFTKFKFKPDEKKSKYYTP-ETQTEVYAYHPKLGEWIEVATFGVYSPIALAKYNIDVP-------VMNLGLG 333 (549)
T ss_dssp HHHHHGGGTCCCCCCEECTTCCTTBCT-TTCEEEEECCSSSSCSEEEEEEEEBCHHHHHHTTCCSC-------EEEEEEB
T ss_pred HHHHHHHcCCCeEEEEECCCCCcccCC-ceEEEEEEecCCCCCcEEEEEEEEECHHHHHHcCCCCC-------eEEEEEe
Confidence 8999999998 355542210 111111 11223333223322678887765221112456777321 2467788
Q ss_pred HhHHHHHHH
Q psy1870 193 IPRLLMALV 201 (264)
Q Consensus 193 v~Rll~alL 201 (264)
++|++....
T Consensus 334 LErL~m~~~ 342 (549)
T 2du7_A 334 VERLAMIIY 342 (549)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999875443
No 54
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=96.49 E-value=0.012 Score=56.67 Aligned_cols=79 Identities=13% Similarity=0.075 Sum_probs=51.8
Q ss_pred CceEEee-cCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEE-Ec
Q psy1870 22 SQIYHLE-PNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG-VT 99 (264)
Q Consensus 22 ~~ly~i~-~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~ 99 (264)
.++|.+. +.. +.++||+ +|.+-...++ ..+ =.-++||+++|||+|-+. --|..||+|.|++. |+
T Consensus 210 a~~F~~~~~~~-~~~~yLr-~SpqLylk~l---~v~---G~~rVyeig~~FR~E~~~------~rH~pEFT~lE~e~af~ 275 (493)
T 3a74_A 210 ARPFITHHNAL-DMTLYMR-IAIELHLKRL---IVG---GLEKVYEIGRVFRNEGIS------TRHNPEFTMLELYEAYA 275 (493)
T ss_dssp SCCCEEEETTT-TEEEEEC-SCSHHHHHHH---HHT---TCCEEEEEEEEECCCCCB------TTBCSEEEEEEEEEETC
T ss_pred ccceEecccCC-CceeEEe-cCHHHHHHHH---hhc---ccCceEEECccccCCCCC------cccCCceeEEEEEecCC
Confidence 4788876 333 6789999 5554222211 111 135899999999999742 14889999999997 55
Q ss_pred CcchHHHHHHHHHHH
Q psy1870 100 LPEDSEKQLEQFLQF 114 (264)
Q Consensus 100 ~pe~s~~~~~~~~~~ 114 (264)
+-++.++..+.++..
T Consensus 276 d~~dlm~l~E~ll~~ 290 (493)
T 3a74_A 276 DFRDIMKLTENLIAH 290 (493)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 545666666655543
No 55
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=96.40 E-value=0.036 Score=49.53 Aligned_cols=146 Identities=17% Similarity=0.142 Sum_probs=84.9
Q ss_pred CceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcchHHHHHHHHHH
Q psy1870 34 NGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQ 113 (264)
Q Consensus 34 ~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe~s~~~~~~~~~ 113 (264)
+..+||++....+....+... ++.|++++++|++||+|.. +.. ...||+|.+.+....+-+ |..+..
T Consensus 108 e~~vLRtsl~p~ll~~l~~N~---~~~~~riFEiG~Vfr~d~~---d~~---h~~Ef~~Le~~~~g~~~d----f~dlKg 174 (294)
T 2rhq_A 108 DEILMRTHTSPVQARTMEKRN---GQGPVKIICPGKVYRRDSD---DAT---HSHQFTQIEGLVVDKNIK----MSDLKG 174 (294)
T ss_dssp SSEEECSSSHHHHHHHHHHTT---TCSCEEEEEEEEEECCCCC---BTT---BCSEEEEEEEEEEESSCC----HHHHHH
T ss_pred CcceeeccCHHHHHHHHHhcC---CCCCccEEEEcCEEecCCC---CCC---CCChhhEEEEEEECCCCC----HHHHHH
Confidence 357899998887775555433 5789999999999997641 111 225999999998775322 667777
Q ss_pred HHHHHHHHh-CCc--eEEEEccCCCcCchhhcccceeeec---Cc-------ccccceeEecCCccchhhcccceeecCC
Q psy1870 114 FEESLFGEL-GIH--TRTLNMGANELGAQAYKKYDVEAWM---PG-------RKHWGELSSCSDCTDYQARRLNIRTEDG 180 (264)
Q Consensus 114 ~~~~i~~~L-glp--yr~v~~~~~dl~~~a~~~ydiE~w~---p~-------~~~~~Ev~s~s~~~D~qa~rl~i~y~~~ 180 (264)
..+.+++.| |++ ++... +..-...-+. .++++. .+ ..+|.||..|--.---..+.+++. ..
T Consensus 175 ~le~ll~~l~g~~~~~~~~~--~~~p~~hPg~--~a~i~~~~~~g~~~~~~~~~~w~eiG~~G~vhP~Vl~~~gl~--~~ 248 (294)
T 2rhq_A 175 TLELVAKKLFGADREIRLRP--SYFPFTEPSV--EVDVSCFKCKGKGCNVCKHTGWIEILGAGMVHPNVLEMAGFD--SN 248 (294)
T ss_dssp HHHHHHHHHHCTTCCEEEEE--CCBTTEEEEE--EEEEECSSSTTSCCTTTTTSSEEEEEEEEEECHHHHHTTTCC--TT
T ss_pred HHHHHHHHHhCCCcEEEEec--CcCCCCCCcE--EEEEEEEccCCcccccccCCCCeEEEEEeeECHHHHHHcCCC--CC
Confidence 788888888 874 55432 1110100112 233333 11 124677776542111124556663 10
Q ss_pred CceeEEecccccHhHHHHHH
Q psy1870 181 KFAHTLNGTACAIPRLLMAL 200 (264)
Q Consensus 181 ~~~ht~~gtg~~v~Rll~al 200 (264)
.+ .....+++++|++...
T Consensus 249 ~~--~~~afel~le~L~m~~ 266 (294)
T 2rhq_A 249 EY--SGFAFGMGPDRIAMLK 266 (294)
T ss_dssp TC--EEEEEEECHHHHHHHH
T ss_pred cC--eEEEEEEeHHHHHHHH
Confidence 11 2335577899875443
No 56
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=96.08 E-value=0.016 Score=55.53 Aligned_cols=77 Identities=14% Similarity=0.166 Sum_probs=50.0
Q ss_pred CCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeE-EEEEeeEEE-E
Q psy1870 21 RSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVH-CFTKIEMFG-V 98 (264)
Q Consensus 21 ~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~r-eF~~~E~~~-f 98 (264)
..++|.+.-. +..+||+-..|.-+-.++. + -+-++||+++|||+|.+. .+ |-+ ||+|.|++. |
T Consensus 213 ga~~f~~~~~--~~~~~L~~Spql~~k~l~~----~---g~~rvy~ig~~FR~E~~~----~~--Rh~pEFt~le~e~af 277 (487)
T 1eov_A 213 GSSVFEVTYF--KGKAYLAQSPQFNKQQLIV----A---DFERVYEIGPVFRAENSN----TH--RHMTEFTGLDMEMAF 277 (487)
T ss_dssp SSCCCEEEET--TEEEEECSCTHHHHHHHHH----T---TCCEEEEEEEEECCCCCC----CT--TCCSEEEEEEEEEEC
T ss_pred CcccceeccC--CccEEcccChHHHHHHHHh----c---CCCceEEEeccEecCCCC----CC--ccchhhhhhhhhhhh
Confidence 4578988643 5789998555543211111 1 145999999999999842 11 556 999999975 8
Q ss_pred cCc-chHHHHHHHHH
Q psy1870 99 TLP-EDSEKQLEQFL 112 (264)
Q Consensus 99 ~~p-e~s~~~~~~~~ 112 (264)
..+ ++.++..+.++
T Consensus 278 ~~~~~dlm~l~E~ll 292 (487)
T 1eov_A 278 EEHYHEVLDTLSELF 292 (487)
T ss_dssp SSCTHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHH
Confidence 754 55555555444
No 57
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=96.05 E-value=0.021 Score=55.05 Aligned_cols=80 Identities=15% Similarity=0.078 Sum_probs=50.5
Q ss_pred CceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEE-EcC
Q psy1870 22 SQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG-VTL 100 (264)
Q Consensus 22 ~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~~ 100 (264)
.+.|.+..+..+.++||+ +|.+-...++ ..+ =.=++|||++|||+|-+. --|..||+|.|++. |++
T Consensus 219 ar~F~t~~~~~~~~~yL~-~SpqLylk~L---~v~---G~~rVyeIg~~FR~E~~~------~rH~pEFt~lE~e~af~d 285 (504)
T 1e1o_A 219 ARPFITHHNALDLDMYLR-IAPELYLKRL---VVG---GFERVFEINRNFRNEGIS------VRHNPEFTMMELYMAYAD 285 (504)
T ss_dssp CCCCEEEETTTTEEEEEC-SCSHHHHHHH---HHH---TCCEEEEEEEEECCCCCC------C-CCSEEEEEEEEEESCC
T ss_pred ccceEeccCCCCceEEec-cCHHHHHHHH---hhc---CCCcEEEEcccccCCCCC------ccccCceeeeeeeecCCC
Confidence 477877533226789998 4444222211 111 124899999999999742 15889999999997 555
Q ss_pred cchHHHHHHHHHHH
Q psy1870 101 PEDSEKQLEQFLQF 114 (264)
Q Consensus 101 pe~s~~~~~~~~~~ 114 (264)
-++.++..+.++..
T Consensus 286 ~~dlm~l~E~li~~ 299 (504)
T 1e1o_A 286 YHDLIELTESLFRT 299 (504)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666665543
No 58
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=96.05 E-value=0.0049 Score=56.68 Aligned_cols=80 Identities=18% Similarity=0.176 Sum_probs=49.1
Q ss_pred CceEEeecC----CCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEE
Q psy1870 22 SQIYHLEPN----YYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG 97 (264)
Q Consensus 22 ~~ly~i~~~----~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~ 97 (264)
.+.|++.-- ..+.++||.-..+.-+=.++..- + =++|||++|||+|.+ +--|+-||+|.|++.
T Consensus 73 ~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~~g------~-~rvyqIg~~FR~E~~------~~rH~pEFt~lE~e~ 139 (345)
T 3a5y_A 73 LVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAG------C-GPVFQLCRSFRNEEM------GRYHNPEFTMLEWYR 139 (345)
T ss_dssp CCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHHTT------C-CSEEEEEEEECCCCC------BTTBCSEEEEEEEEE
T ss_pred cceEEEEecCcccccCCCEeecCCHHHHHHHHHHcC------C-CcEEEEEcceeCCCC------cccccchhheeeeee
Confidence 456666421 10256888765554433233221 1 289999999999974 223788999999996
Q ss_pred -EcCcchHHHHHHHHHHH
Q psy1870 98 -VTLPEDSEKQLEQFLQF 114 (264)
Q Consensus 98 -f~~pe~s~~~~~~~~~~ 114 (264)
|++-++..+..+.++..
T Consensus 140 af~d~~d~m~~~E~li~~ 157 (345)
T 3a5y_A 140 PHYDMYRLMNEVDDLLQQ 157 (345)
T ss_dssp ETCCHHHHHHHHHHHHHH
T ss_pred eCCCHHHHHHHHHHHHHH
Confidence 55545555555555543
No 59
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=95.84 E-value=0.022 Score=53.90 Aligned_cols=82 Identities=11% Similarity=0.129 Sum_probs=50.4
Q ss_pred CCCCCCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEE
Q psy1870 17 SKGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMF 96 (264)
Q Consensus 17 ~~~~~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~ 96 (264)
+.+ ..++|.+..- +.++||+-..+.-+=.++. +- --++||+++|||+|.+.. .+ ..-||+|.|++
T Consensus 169 ~eg-~~~~f~~~~~--~~~~yL~~Spql~~q~l~~----~g---~~rvf~i~~~FR~E~~~t-~R----H~pEFt~le~e 233 (438)
T 3nem_A 169 TEG-GTELFPMKYF--EEDAFLAQSPQLYKQIMMA----SG---LDRVYEIAPIFRAEEHNT-TR----HLNEAWSIDSE 233 (438)
T ss_dssp SSC-SSSCCEEEET--TEEEEECSCSHHHHHHGGG----TT---CCEEEEEEEEECCCSSCC-TT----CCSEEEEEEEE
T ss_pred CCC-CccceeEeeC--CccEEEecChHHHHHHHHh----cC---CCceEEEcceEECCCCCC-cc----cccceeeeeee
Confidence 344 4567877543 5679997666543222221 11 238999999999998421 11 22499999999
Q ss_pred E-EcC-cchHHHHHHHHHH
Q psy1870 97 G-VTL-PEDSEKQLEQFLQ 113 (264)
Q Consensus 97 ~-f~~-pe~s~~~~~~~~~ 113 (264)
. |.. -++.++..+.++.
T Consensus 234 ~a~~~~~~d~m~~~E~li~ 252 (438)
T 3nem_A 234 MAFIEDEEEVMSFLERLVA 252 (438)
T ss_dssp EESCSSHHHHHHHHHHHHH
T ss_pred eccCccHHHHHHHHHHHHH
Confidence 6 666 4566555555543
No 60
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=95.51 E-value=0.013 Score=57.45 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=47.9
Q ss_pred EEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEE-EcCcch
Q psy1870 25 YHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG-VTLPED 103 (264)
Q Consensus 25 y~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~~pe~ 103 (264)
|.+..+..+.++|--|+|.|-.-.+.. .+- + =++|||++|||+|-++ . -|.=||+|.|++. |.+-++
T Consensus 182 F~v~~~~~~~~~y~L~qSPQl~kq~Lm---v~G--~-~rvfqI~~~FR~E~~~--~----~r~pEFT~lE~e~af~d~~d 249 (580)
T 1l0w_A 182 FLVPYRHEPGLFYALPQSPQLFKQMLM---VAG--L-DRYFQIARCFRDEDLR--A----DRQPDFTQLDLEMSFVEVED 249 (580)
T ss_dssp CEEECTTSTTEEEECCSCSHHHHHHHH---HTT--C-SEEEEEEEEECCCCCC--S----SCCSEEEEEEEEEESCCHHH
T ss_pred ccccccccCCceeECccCHHHHHHHHH---Hhc--c-CCeEEEeceeeCCCCC--C----CcCCCccceeeeecCCCHHH
Confidence 666544213456534566654443221 111 1 2799999999999843 1 1445999999996 776666
Q ss_pred HHHHHHHHHHH
Q psy1870 104 SEKQLEQFLQF 114 (264)
Q Consensus 104 s~~~~~~~~~~ 114 (264)
.++..+.++..
T Consensus 250 vm~~~E~li~~ 260 (580)
T 1l0w_A 250 VLELNERLMAH 260 (580)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 61
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=95.50 E-value=0.013 Score=57.58 Aligned_cols=78 Identities=15% Similarity=0.220 Sum_probs=47.9
Q ss_pred EEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEE-EcCcch
Q psy1870 25 YHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG-VTLPED 103 (264)
Q Consensus 25 y~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~~pe~ 103 (264)
|.+..+..+.++|--|+|.|-.-.++. .+- + =++|||++|||+|-++ . -|.=||+|.|++. |++-++
T Consensus 176 F~v~~~~~~~~~y~L~qSPQl~kq~Lm---v~G--~-~rvfqI~~~FR~E~~~--t----~r~pEFT~lE~e~af~d~~d 243 (585)
T 1c0a_A 176 YLVPSRVHKGKFYALPQSPQLFKQLLM---MSG--F-DRYYQIVKCFRDEDLR--A----DRQPEFTQIDVETSFMTAPQ 243 (585)
T ss_dssp CEEECSSSTTCEEECCSCSHHHHHHHH---HTT--C-CEEEEEEEEECCCCCB--T----TBCSEEEEEEEEEESCCHHH
T ss_pred ceecccccCCceEeCccCHHHHHHHHH---hcC--C-CceEEEeceeecCCCC--C----CcCcccceeeeeecCCCHHH
Confidence 766544213455534566654443221 111 1 2799999999999843 1 1555999999996 776666
Q ss_pred HHHHHHHHHHH
Q psy1870 104 SEKQLEQFLQF 114 (264)
Q Consensus 104 s~~~~~~~~~~ 114 (264)
.++..+.++..
T Consensus 244 vm~~~E~li~~ 254 (585)
T 1c0a_A 244 VREVMEALVRH 254 (585)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 62
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=95.48 E-value=0.021 Score=53.75 Aligned_cols=76 Identities=12% Similarity=0.174 Sum_probs=27.8
Q ss_pred CCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeE-EEEEeeEEEEc
Q psy1870 21 RSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVH-CFTKIEMFGVT 99 (264)
Q Consensus 21 ~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~r-eF~~~E~~~f~ 99 (264)
..++|.+. .. +.+++|+-+.|.. ..++.. . +-++||+++|||+|.+. .+ |-+ ||+|.|.+..-
T Consensus 160 ~~~~f~~~-~~-g~~~~L~~Spel~-~~~l~~------g-~~rvf~ig~~FR~E~~~----~~--RH~pEFtqle~e~~~ 223 (422)
T 1n9w_A 160 GSGLFGVD-YF-EKRAYLAQSPQLY-KQIMVG------V-FERVYEVAPVWRMEEHH----TS--RHLNEYLSLDVEMGF 223 (422)
T ss_dssp ---------------------CHHH-HHHHHH------H-HSEEEEEEEC-------------------CCEEEEEEEES
T ss_pred CceeEEEe-eC-CCcEEeeeCHHHH-HHHHhh------C-CCceeEEeCceECCCCC----CC--cccceeEEeeeeeeC
Confidence 34778774 22 5678996333433 233221 1 36999999999999742 11 556 99999999754
Q ss_pred C--cchHHHHHHHHH
Q psy1870 100 L--PEDSEKQLEQFL 112 (264)
Q Consensus 100 ~--pe~s~~~~~~~~ 112 (264)
. .++..+..+.++
T Consensus 224 ~~d~~dlm~l~e~ll 238 (422)
T 1n9w_A 224 IADEEDLMRLEEALL 238 (422)
T ss_dssp CSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 4 345554444444
No 63
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=95.46 E-value=0.012 Score=57.98 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=45.6
Q ss_pred eEEeecCCCCCceEEeCCchHHHHH-HHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEE-EcCc
Q psy1870 24 IYHLEPNYYGNGWCLSGTAEMGIAR-YLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG-VTLP 101 (264)
Q Consensus 24 ly~i~~~~~~~~~~L~pTaE~~i~~-l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~~p 101 (264)
-|.+..+..+..+||. +|.|-.-. ++. +- + =++|||++|||+|.++ . -|+-||+|.|++. |++-
T Consensus 186 ~F~v~~~~~g~~~~L~-qSpql~kq~l~v----~g--~-~rvfqi~~~FR~E~~~--t----~r~pEFt~lE~e~af~d~ 251 (617)
T 4ah6_A 186 EFLVPSREPGKFYSLP-QSPQQFKQLLMV----GG--L-DRYFQVARCYRDEGSR--P----DRQPEFTQIDIEMSFVDQ 251 (617)
T ss_dssp CCEEECSSTTCEEECC-SSTTHHHHHHHH----TS--C-SEEEEEEEEECCCSSC--S----SSCSEEEEEEEEEESCCH
T ss_pred CceeccccCCcccccc-cCHHHHHHHHHh----cc--c-CcEEEEEhheecccCC--C----CcCcceecceeeecCCCH
Confidence 3666554324456665 44432222 221 11 1 2899999999999743 1 2578999999996 6665
Q ss_pred chHHHHHHHHHH
Q psy1870 102 EDSEKQLEQFLQ 113 (264)
Q Consensus 102 e~s~~~~~~~~~ 113 (264)
++.++..+.++.
T Consensus 252 ~d~m~~~E~l~~ 263 (617)
T 4ah6_A 252 TGIQSLIEGLLQ 263 (617)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 64
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=95.38 E-value=0.016 Score=55.23 Aligned_cols=77 Identities=19% Similarity=0.213 Sum_probs=46.1
Q ss_pred CCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEE-Ec
Q psy1870 21 RSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG-VT 99 (264)
Q Consensus 21 ~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~ 99 (264)
..++|++.-- +.++||+-..+.-+ ...+. .+ =++||+++|||+|.+.+ .+ ..-||+|.|.+. |+
T Consensus 191 g~~~f~~~~~--~~~~~L~~SpqL~l-----q~l~~--g~-~rVyeig~~FR~E~~~t-~r----H~pEFtmlE~e~af~ 255 (456)
T 3m4p_A 191 GSTLFKLQYF--NEPAYLTQSSQLYL-----ESVIA--SL-GKSFCMLSSYRAEQSRT-VR----HLAEYLHLEAELPFI 255 (456)
T ss_dssp -CCCCEEEET--TEEEEECSCCHHHH-----HTTHH--HH-SSEEEEEEEECCCSCCC-SS----CCSEEEEEEEEEESC
T ss_pred cccccccccc--CCCcccccCHHHHH-----HHHHh--cc-CcEEEEEhheecCCCCC-Cc----chHHHHHhHHHHhcC
Confidence 3456766432 56788876665322 21111 12 47899999999997421 11 224999999996 66
Q ss_pred CcchHHHHHHHHH
Q psy1870 100 LPEDSEKQLEQFL 112 (264)
Q Consensus 100 ~pe~s~~~~~~~~ 112 (264)
+-++.++..+.++
T Consensus 256 d~~d~m~~~E~li 268 (456)
T 3m4p_A 256 SFEDLLNHLEDLV 268 (456)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555444444
No 65
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=95.12 E-value=0.021 Score=54.04 Aligned_cols=77 Identities=19% Similarity=0.350 Sum_probs=47.5
Q ss_pred CCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeE-EEEEeeEEE-E
Q psy1870 21 RSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVH-CFTKIEMFG-V 98 (264)
Q Consensus 21 ~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~r-eF~~~E~~~-f 98 (264)
..++|.+.-- +.++||+-..+. |....+. -+ =++||+++|||+|-+.+ . |-. ||+|.|.+. |
T Consensus 167 ~~~~F~~~~~--g~~~~L~~SpqL-----ylq~l~~--g~-~rvfeIg~~FR~E~~~t-~-----RH~~EFT~lE~e~af 230 (435)
T 2xgt_A 167 GSTLFNLDYF--GEQSFLTQSSQL-----YLETCIP--TL-GDVFCIAQSYRAEKSRT-R-----RHLAEYAHVEAECPF 230 (435)
T ss_dssp TTSCCEEEET--TEEEEECSCSHH-----HHHHHHH--HH-CSEEEEEEEECCCSSCC-T-----TCCSEEEEEEEEEES
T ss_pred chhceeeccC--CcccccCCChHH-----HHHHhhh--cc-CceEEEecceecCCCCc-c-----ccccceeEEEEEEec
Confidence 4467777532 567888755542 2211111 11 38999999999998421 1 334 999999996 6
Q ss_pred cCcchHHHHHHHHHH
Q psy1870 99 TLPEDSEKQLEQFLQ 113 (264)
Q Consensus 99 ~~pe~s~~~~~~~~~ 113 (264)
++-++.++..+.++.
T Consensus 231 ~d~~d~m~~~E~li~ 245 (435)
T 2xgt_A 231 ITLDDLMEKIEELVC 245 (435)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 655666655555543
No 66
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=94.71 E-value=0.029 Score=54.28 Aligned_cols=80 Identities=11% Similarity=0.035 Sum_probs=51.8
Q ss_pred CceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEE-EcC
Q psy1870 22 SQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG-VTL 100 (264)
Q Consensus 22 ~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~~ 100 (264)
.+.|.+..+.-+.++||+-+.|.-+=.++.. . + =++||+++|||+|-+. + -++-||+|.|.|. |++
T Consensus 212 a~~F~t~~~~~~~~~yL~~SpqL~lk~liv~---g---~-~rVyeig~~FR~E~~~---t---rH~pEFtmlE~e~af~d 278 (521)
T 3bju_A 212 AKPFITYHNELDMNLYMRIAPELYHKMLVVG---G---I-DRVYEIGRQFRNEGID---L---THNPEFTTCEFYMAYAD 278 (521)
T ss_dssp CCCCEEEETTTTEEEEECSCSHHHHHHHHHT---T---C-CEEEEEEEEECCSCCB---T---TBCSEEEEEEEEEETCC
T ss_pred ccceeeecccCCcceEeeCCHHHHHHHHHhc---C---c-CceEEEEcceeCCCCC---C---ccchhhhhhhhhhhcCC
Confidence 4677664332156799986666333222221 1 1 2799999999999742 2 3778999999996 665
Q ss_pred cchHHHHHHHHHHH
Q psy1870 101 PEDSEKQLEQFLQF 114 (264)
Q Consensus 101 pe~s~~~~~~~~~~ 114 (264)
-++.++..+.++..
T Consensus 279 ~~dlm~l~E~li~~ 292 (521)
T 3bju_A 279 YHDLMEITEKMVSG 292 (521)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666666543
No 67
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=94.58 E-value=0.033 Score=53.99 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=50.2
Q ss_pred ceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEE-EcCc
Q psy1870 23 QIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG-VTLP 101 (264)
Q Consensus 23 ~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~~p 101 (264)
+.|.+..+.-+.++||+-..|.-+=.++.. . ==++|||++|||+|-+. --+.-||+|.|.|. |++-
T Consensus 241 ~pF~t~~n~~~~~~yL~~SpqLylk~L~v~---G----~~rVyeIg~~FR~E~~~------~rH~pEFtmlE~e~af~d~ 307 (529)
T 4ex5_A 241 KPFVTHHNALDMEMFLRIAPELYLKRLIVG---G----FERVFEINRNFRNEGVS------PRHNPEFTMMEFYAAYTDY 307 (529)
T ss_dssp CCCEEEETTTTEEEEECSCSHHHHHHHHHT---T----CSEEEEEEEEECCSCCB------TTBCSEEEEEEEEEETCCH
T ss_pred cccccccccCCcceecccCHHHHHHHHHhc---C----CCcEEEeehheecCCCC------CCcccHhHhhhhhhhcCCH
Confidence 566543222156789886655433222221 1 14899999999999742 24778999999996 6655
Q ss_pred chHHHHHHHHHHH
Q psy1870 102 EDSEKQLEQFLQF 114 (264)
Q Consensus 102 e~s~~~~~~~~~~ 114 (264)
++.++..+.++..
T Consensus 308 ~dlm~l~E~li~~ 320 (529)
T 4ex5_A 308 RWLMDFTERLIRQ 320 (529)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666643
No 68
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=93.33 E-value=0.088 Score=51.18 Aligned_cols=78 Identities=13% Similarity=0.198 Sum_probs=39.6
Q ss_pred CCceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEE-Ec
Q psy1870 21 RSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFG-VT 99 (264)
Q Consensus 21 ~~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~-f~ 99 (264)
..+.|.+.-. +.++||.-..+.-+-.++.. .+ =++|||++|||+|.+.+ --..-||+|.|.+. |.
T Consensus 279 ga~~F~v~~~--~~~~yL~~Spql~~k~ll~~------g~-~rVfeI~~~FR~E~~~t-----~RHl~EFtmlE~e~af~ 344 (548)
T 3i7f_A 279 GSNIFEVKYF--DRKAYLAQSPQLYKQMAIMG------DF-RKVFEVGPVFRAENSNT-----RRHLTEFEGLDIEMEIV 344 (548)
T ss_dssp ---------------CCBCSCTHHHHHHHHTT------TC-CEEEEEEEECCCSCCCS-----SSCCSCEEEEEEEEECS
T ss_pred CcceeEEecC--CCceEeccCHHHHHHHHHhc------Cc-CcEEEEeeeEecCCCCC-----CCcchhhhchhhhhhhh
Confidence 3466765432 45678876655333222221 11 48999999999998521 11235999999994 77
Q ss_pred Cc-chHHHHHHHHH
Q psy1870 100 LP-EDSEKQLEQFL 112 (264)
Q Consensus 100 ~p-e~s~~~~~~~~ 112 (264)
.+ ++.++..+.++
T Consensus 345 ~d~~d~m~~~E~li 358 (548)
T 3i7f_A 345 ENYHECIDVMEKLF 358 (548)
T ss_dssp SCTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 43 55554444443
No 69
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=86.15 E-value=4.1 Score=37.99 Aligned_cols=147 Identities=16% Similarity=0.122 Sum_probs=79.8
Q ss_pred CceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEc--
Q psy1870 22 SQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVT-- 99 (264)
Q Consensus 22 ~~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~-- 99 (264)
.+.|.|. +...||...--....+++.. .| ++..+|.+||++.. + -....+|.|+|...+.
T Consensus 105 ~Dtfyi~-----~~~vLRThts~~~~~~l~~~------~~-k~~~~G~VyR~D~~---d---a~h~n~fhQ~egv~lfe~ 166 (415)
T 3cmq_A 105 GDNYYLN-----RTHMLRAHTSAHQWDLLHAG------LD-AFLVVGDVYRRDQI---D---SQHYPIFHQLEAVRLFSK 166 (415)
T ss_dssp GGSCBSS-----SSEEECSSGGGGHHHHHHTT------CS-EEEEEEEEECCCCC---B---TTBCSEEEEEEEEEEEEH
T ss_pred cceEEec-----CCeEEcCCCcHHHHHHHHHC------CC-CEEEeeeEEeccch---h---hhhhHHhcCCCcEEEEec
Confidence 4455553 34677774443444444331 36 99999999998741 0 1133466666665541
Q ss_pred -----------------------------CcchHHHHHHHHHHHHHHHHHHh-CCc--eEEEEccCCCcCchhhccccee
Q psy1870 100 -----------------------------LPEDSEKQLEQFLQFEESLFGEL-GIH--TRTLNMGANELGAQAYKKYDVE 147 (264)
Q Consensus 100 -----------------------------~pe~s~~~~~~~~~~~~~i~~~L-glp--yr~v~~~~~dl~~~a~~~ydiE 147 (264)
+++..+..|..+....+.+++.| |++ +++.... .. ...-+.+ ++
T Consensus 167 g~~f~~~~~~~~la~~~~g~~~~~~~~~~~~~~vd~~f~dlKg~le~ll~~lfg~~~~~~~~~~~-~p-~~hPgr~--a~ 242 (415)
T 3cmq_A 167 HELFAGIKDGESLQLFEQSSRSAHKQETHTMEAVKLVEFDLKQTLTRLMAHLFGDELEIRWVDCY-FP-FTHPSFE--ME 242 (415)
T ss_dssp HHHTTTSTTGGGCCSBCCCCCCSSCCTTBCHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEE-ET-TEEEEEE--EE
T ss_pred cceeccccccceEEEEEecCcccccccccccccccccHHHHHHHHHHHHHHHcCCCceEEEecCC-CC-CCCCceE--EE
Confidence 01122344778888999999987 985 6654211 11 1111222 23
Q ss_pred eecCcccccceeEecCCccc-hhhcccceeecCCCceeEEecccccHhHHHHH
Q psy1870 148 AWMPGRKHWGELSSCSDCTD-YQARRLNIRTEDGKFAHTLNGTACAIPRLLMA 199 (264)
Q Consensus 148 ~w~p~~~~~~Ev~s~s~~~D-~qa~rl~i~y~~~~~~ht~~gtg~~v~Rll~a 199 (264)
++. .++|.|+..| --.. -..+.+++.. .+....+++++|++..
T Consensus 243 I~~--~g~wlE~lG~-G~lhP~Vl~~~gl~~------~vg~afel~le~l~~~ 286 (415)
T 3cmq_A 243 INF--HGEWLEVLGC-GVMEQQLVNSAGAQD------RIGWAFGLGLERLAMI 286 (415)
T ss_dssp EEE--TTEEEEEEEE-EEECHHHHHHTTCTT------EEEEEEEEEHHHHHHH
T ss_pred EEE--CCeeEEEEEE-EEeCHHHHHHcCCCC------cceEEEEEcHHHHhhh
Confidence 333 2468888776 2111 1245666631 1213567889998753
No 70
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=78.36 E-value=11 Score=36.49 Aligned_cols=91 Identities=9% Similarity=0.058 Sum_probs=59.4
Q ss_pred ceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcc
Q psy1870 23 QIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPE 102 (264)
Q Consensus 23 ~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe 102 (264)
+.++|.+.-+.+.-+||++-=.++....+.. .. ++.|++++++|++||.+.. ... ..+|+.+..+.......
T Consensus 435 ~~v~L~NPis~e~svmRtsLlpgLL~~l~~N-~~-~~~~vrlFEiG~Vf~~d~~---~~~---~~~e~~~la~~~~g~~~ 506 (589)
T 3l4g_B 435 KAVHISNPKTAEFQVARTTLLPGLLKTIAAN-RK-MPLPLKLFEISDIVIKDSN---TDV---GAKNYRHLCAVYYNKNP 506 (589)
T ss_dssp CCCBBSSCSSGGGSEECSCSHHHHHHHHHHT-TT-SCSCEEEEEEEEEEEECTT---STT---SEEEEEEEEEEEESSSC
T ss_pred CeEEEcCCCchhHhHHHHHHHHHHHHHHHHH-hc-CCCceEEEEeeeEEecCCc---ccc---CCccccEEEEEEECCCC
Confidence 4555654332345688988877777444322 22 3469999999999997642 112 24678877776554332
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCc
Q psy1870 103 DSEKQLEQFLQFEESLFGELGIH 125 (264)
Q Consensus 103 ~s~~~~~~~~~~~~~i~~~Lglp 125 (264)
.|..+....+.+++.||++
T Consensus 507 ----~f~~lkg~le~ll~~lg~~ 525 (589)
T 3l4g_B 507 ----GFEIIHGLLDRIMQLLDVP 525 (589)
T ss_dssp ----CHHHHHHHHHHHHHHTTCC
T ss_pred ----CHHHHHHHHHHHHHHcCCC
Confidence 2667777788999999996
No 71
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=77.56 E-value=9.3 Score=38.57 Aligned_cols=98 Identities=3% Similarity=-0.148 Sum_probs=66.4
Q ss_pred eEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcc-
Q psy1870 24 IYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPE- 102 (264)
Q Consensus 24 ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe- 102 (264)
.+.|.+.-+.+.-+||++--.++....+. ..+.++.|++++++|++||.+... ++ . +|+.+..+.......
T Consensus 535 ~v~L~NPis~e~svLRtsLlpgLL~~l~~-N~~r~~~~vrlFEiG~Vf~~d~~~--~~----~-~e~~~la~l~~G~~~~ 606 (795)
T 2rhq_B 535 TISLLMPMSEAHATLRQSLLPHLIEATAY-NVARKNKDVRLYEIGRVFFGNGEG--EL----P-DEVEYLSGILTGEYVV 606 (795)
T ss_dssp CEECSSCSCTTSSEECSCSHHHHHHHHHH-HHHTTCCCEEEEEEEEEEECCCTT--SC----C-EEEEEEEEEEESEEEE
T ss_pred eEEEcCCCchhhhhhhhccHHHHHHHHHH-HhcCCCCCeEEEEEeeEEecCCcc--cC----c-chhhEEEEEEEecccc
Confidence 46666443245568998887777754443 345667899999999999964311 11 1 888888877665431
Q ss_pred hHH------HHHHHHHHHHHHHHHHhCCceEEE
Q psy1870 103 DSE------KQLEQFLQFEESLFGELGIHTRTL 129 (264)
Q Consensus 103 ~s~------~~~~~~~~~~~~i~~~Lglpyr~v 129 (264)
+.+ -.|..+....+.+++.||+++++.
T Consensus 607 ~~w~~~~~~~dF~dlKg~le~ll~~lG~~~~~~ 639 (795)
T 2rhq_B 607 NAWQGKKEEIDFFIAKGVVDRVAEKLNLEFSYK 639 (795)
T ss_dssp EGGGTEEEECCHHHHHHHHHHHHHHHTCCCEEE
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 122 237788899999999999986654
No 72
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=73.42 E-value=1.7 Score=39.36 Aligned_cols=62 Identities=26% Similarity=0.308 Sum_probs=46.0
Q ss_pred cccceeeecCcccccceeEecCCccchhh--c---------ccceeecCC----CceeEEecccccHhHHHHHHHHhc
Q psy1870 142 KKYDVEAWMPGRKHWGELSSCSDCTDYQA--R---------RLNIRTEDG----KFAHTLNGTACAIPRLLMALVETH 204 (264)
Q Consensus 142 ~~ydiE~w~p~~~~~~Ev~s~s~~~D~qa--~---------rl~i~y~~~----~~~ht~~gtg~~v~Rll~alLE~~ 204 (264)
..+||-+|.|-.+...|++|+...-|..+ + |+...|... .++.|+ |-|+|.+|+...||..-
T Consensus 232 LNGDilvw~~vl~~a~ElSSMGIRVd~~~L~~QL~~~g~~er~~~~yh~~ll~g~LP~Ti-GGGIGQSRLcmflL~k~ 308 (330)
T 12as_A 232 LNGDILVWNPVLEDAFELSSMGIRVDADTLKHQLALTGDEDRLELEWHQALLRGEMPQTI-GGGIGQSRLTMLLLQLP 308 (330)
T ss_dssp SEEEEEEEETTTTEEEEEEEEEEBCCHHHHHHHHHHHTCTTGGGSHHHHHHHTTCSCCEE-EEEEEHHHHHHHHHTCS
T ss_pred ccceEEEeccccCceeEEecceEEeCHHHHHHHHHHcCCChhhccHHHHHHHcCCCCccc-cccccHHHHHHHHhccc
Confidence 45688899998889999999988777643 1 333333322 378887 77899999999999873
No 73
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=67.88 E-value=2.8 Score=38.49 Aligned_cols=33 Identities=33% Similarity=0.409 Sum_probs=25.3
Q ss_pred cccccHhHHHHHHHHhccccCCceeccCCccccccceeeecC
Q psy1870 188 GTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGD 229 (264)
Q Consensus 188 gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~~ 229 (264)
|.++|++|++++| |++ | +.||. ++|++ +.|++.
T Consensus 305 g~~igveRl~~~l-e~~----~-~~~p~-~~p~~--v~i~~~ 337 (420)
T 1qe0_A 305 GFALSIERLLLAL-EEE----G-IELDI-EENLD--LFIVTM 337 (420)
T ss_dssp EEEEEHHHHHHHH-HHT----T-CCCCC-CCCCS--EEEEEC
T ss_pred EEEecHHHHHHHH-Hhc----C-CCCCC-CCCCe--EEEEEe
Confidence 9999999999986 654 3 47888 99998 445543
No 74
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=67.85 E-value=11 Score=37.91 Aligned_cols=91 Identities=16% Similarity=0.061 Sum_probs=62.1
Q ss_pred eEEeecCCCCCceEEeCCchHHHHHHHhccccCCC-CCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCcc
Q psy1870 24 IYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPES-QLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPE 102 (264)
Q Consensus 24 ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr-~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~pe 102 (264)
.+.|.+.-+.+.-+||++--.++....+. ..+.+ +.|++++++|++|| | +|+.+..+.......
T Consensus 530 ~v~L~NPis~d~svLRtsLlpgLL~~l~~-N~~r~~~~~vrlFEiG~Vf~-~-------------~e~~~lagl~~G~~~ 594 (785)
T 1b7y_B 530 RLLLLNPLAPEKAALRTHLFPGLVRVLKE-NLDLDRPERALLFEVGRVFR-E-------------REETHLAGLLFGEGV 594 (785)
T ss_dssp SCEESSCSSTTSSEECSCSHHHHHHHHHH-HHHHSCCSCEEEEEEEEEES-S-------------SEEEEEEEEEESSCB
T ss_pred eEEEcCCCchhhhhhhhhhHHHHHHHHHH-HhhcCCCCCeEEEEEeeeec-c-------------ChhhEEEEEEECCCc
Confidence 35565433245568999887777744433 23445 67999999999998 2 678887776665431
Q ss_pred -hHH-----HHHHHHHHHHHHHHHHhCCceEEE
Q psy1870 103 -DSE-----KQLEQFLQFEESLFGELGIHTRTL 129 (264)
Q Consensus 103 -~s~-----~~~~~~~~~~~~i~~~Lglpyr~v 129 (264)
..+ -.|..+....+.+++.||+.+++.
T Consensus 595 ~~~w~~~~~vdf~dlKg~le~ll~~lgi~~~~~ 627 (785)
T 1b7y_B 595 GLPWAKERLSGYFLLKGYLEALFARLGLAFRVE 627 (785)
T ss_dssp SCSSSSCCBCSHHHHHHHHHHHHHHHTCCCEEE
T ss_pred ccccCccCCcCHHHHHHHHHHHHHHcCCceEEe
Confidence 110 237788888999999999977754
No 75
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=67.05 E-value=3.6 Score=37.79 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=25.5
Q ss_pred cccccHhHHHHHHHHhccccCCceeccCCccccccceeeecCC
Q psy1870 188 GTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDT 230 (264)
Q Consensus 188 gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~~~ 230 (264)
|.|+|++|++++|.|+ | .+|++.+|++ +.|++..
T Consensus 303 Gf~igveRl~~~l~e~-----~--~~~~~~~p~~--v~i~~~~ 336 (423)
T 1htt_A 303 GFAMGLERLVLLVQAV-----N--PEFKADPVVD--IYLVASG 336 (423)
T ss_dssp EEEEEHHHHHHHHHHH-----S--TTCCCCCSCS--EEEEECS
T ss_pred EEEecHHHHHHHHHhc-----C--cCCCCCCCCc--EEEEEcC
Confidence 7999999999999885 2 2566679998 4555543
No 76
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=66.28 E-value=3.4 Score=37.91 Aligned_cols=34 Identities=24% Similarity=0.050 Sum_probs=25.0
Q ss_pred cccccHhHHHHHHHHhccccCCceeccCCccccccceeeecCC
Q psy1870 188 GTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDT 230 (264)
Q Consensus 188 gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~~~ 230 (264)
|.|+|++|++++|.|+ | .+|+|.+|++ +.|++..
T Consensus 304 Gf~igieRl~~~l~e~-----~--~~~~~~~p~~--v~i~~~~ 337 (421)
T 1h4v_B 304 GFAFGVERVALALEAE-----G--FGLPEEKGPD--LYLIPLT 337 (421)
T ss_pred EEeecHHHHHHHHHhc-----C--cCCCCCCCCe--EEEEECC
Confidence 7999999999999884 3 2566779988 4444443
No 77
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=62.59 E-value=4.2 Score=38.21 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=25.3
Q ss_pred eeEEecccccHhHHHHHHHHhccccCCceeccC-Cccccc
Q psy1870 183 AHTLNGTACAIPRLLMALVETHQNQDGTVNIPE-CLQPFM 221 (264)
Q Consensus 183 ~ht~~gtg~~v~Rll~alLE~~~~~~G~i~lP~-~LaP~~ 221 (264)
++.+ |.|+|++|++.+|.|+ | .||. |++|++
T Consensus 342 ~pav-GfaiGieRli~~L~e~-----g--~~p~~~~~p~~ 373 (465)
T 3net_A 342 MPGV-GISIGLTRLISRLLKA-----G--ILNTLPPTPAQ 373 (465)
T ss_dssp CCEE-EEEEEHHHHHHHHHHT-----T--SSCCCCSCSCC
T ss_pred Ccee-eeeccHHHHHHHHHHc-----C--CCCCcCCCCCe
Confidence 4554 8889999999999985 4 3887 899988
No 78
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=45.94 E-value=1.2e+02 Score=24.79 Aligned_cols=106 Identities=12% Similarity=0.153 Sum_probs=57.8
Q ss_pred ceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcC--
Q psy1870 23 QIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTL-- 100 (264)
Q Consensus 23 ~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~-- 100 (264)
+..+|.+.-+.+.-+||+|-=.++....+. ..+.+.-+++++++|++|+.+.........+-..+|..+.-+.....
T Consensus 46 ~~v~l~NPls~e~~vmRtsLlpgLL~~~~~-N~~r~~~~v~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~ 124 (213)
T 3ig2_A 46 NLVMLLNPLSADLNCMRQTLLFGGLESIAH-NANRKNADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMV 124 (213)
T ss_dssp GCEEBSSGGGCSCCEECSCSHHHHHHHHHH-C------CCEEEEEEEEEEECC----------CEEEEEEEEEEEEEEEC
T ss_pred CeEEEeCCcchhHHHHHHHhHHHHHHHHHH-HhcCCCCCeeEEEeeeEEecCcccccccccccccchhHEEEEEEECCCc
Confidence 456665432245678999887777754432 23445556999999999987641100000011125555554433221
Q ss_pred cc-----hHHHHHHHHHHHHHHHHHHhCCc---eEEE
Q psy1870 101 PE-----DSEKQLEQFLQFEESLFGELGIH---TRTL 129 (264)
Q Consensus 101 pe-----~s~~~~~~~~~~~~~i~~~Lglp---yr~v 129 (264)
++ ....-|..+....+.+++.||++ +++.
T Consensus 125 ~~~w~~~~~~~df~dlKg~ve~ll~~lg~~~~~~~~~ 161 (213)
T 3ig2_A 125 SNSWAHADENTSVYELKAYVENIFKRLGLDLHSLVVG 161 (213)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHHTTBCGGGCEEE
T ss_pred cccCCCCCCCcCHHHHHHHHHHHHHHhCCCccceEEe
Confidence 11 11234778899999999999997 6653
No 79
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=43.92 E-value=12 Score=34.43 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=20.7
Q ss_pred cccccHhHHHHHHHHhccccCCceec-cCCcccccc
Q psy1870 188 GTACAIPRLLMALVETHQNQDGTVNI-PECLQPFMF 222 (264)
Q Consensus 188 gtg~~v~Rll~alLE~~~~~~G~i~l-P~~LaP~~~ 222 (264)
|.|++++|++++|+|+ | .| |. +|+++
T Consensus 309 Gf~igveRl~~~l~e~-----~--~~~p~--~p~~v 335 (434)
T 1wu7_A 309 GFGMGDAVISLLLKRE-----N--VQIPR--EKKSV 335 (434)
T ss_dssp EEEEEHHHHHHHHHHT-----T--CCCCC--SSCEE
T ss_pred EEEEcHHHHHHHHHhc-----C--CccCC--CCCcE
Confidence 7999999999999886 2 35 76 78773
No 80
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=41.42 E-value=1.5e+02 Score=24.33 Aligned_cols=106 Identities=16% Similarity=0.138 Sum_probs=59.3
Q ss_pred ceEEeecCCCCCceEEeCCchHHHHHHHhccccCCCCCcceEEEecceeccCccCCccCCCceeeEEEEEeeEEEEcCc-
Q psy1870 23 QIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLP- 101 (264)
Q Consensus 23 ~ly~i~~~~~~~~~~L~pTaE~~i~~l~~~~~~syr~LPl~l~q~s~~fR~E~s~g~~~~GL~R~reF~~~E~~~f~~p- 101 (264)
+..+|.+.-+.+.-+||+|-=.++....+. ..+.+.-+++++++|++|+.+.........+-...|..+.-+...-..
T Consensus 46 ~~v~l~NPls~e~~vmRtsLlpgLL~~~~~-N~~r~~~~~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~ 124 (213)
T 3ica_A 46 MAVELMNPLSQELNCMRQTLLFGGLETLSH-NLRRKHLSLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRV 124 (213)
T ss_dssp GCCBCSSBSCSSEEEECSSSHHHHHHHHHH-HHTTTCSEEEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCC
T ss_pred CeEEecCCccHHHHHHHHHhHHHHHHHHHH-HHcCCCCCeeEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCC
Confidence 334454433245568888887777644432 234444459999999999875411000000112355555544332211
Q ss_pred chHH------HHHHHHHHHHHHHHHHhCCc---eEEE
Q psy1870 102 EDSE------KQLEQFLQFEESLFGELGIH---TRTL 129 (264)
Q Consensus 102 e~s~------~~~~~~~~~~~~i~~~Lglp---yr~v 129 (264)
.+.+ .-|..+....+.+++.||++ +++.
T Consensus 125 ~~~w~~~~~~~df~d~Kg~ve~ll~~lgi~~~~~~~~ 161 (213)
T 3ica_A 125 HNSWAHPEEPTSVFELKAVVEQVLCRVGIETGAYTLK 161 (213)
T ss_dssp C-----CCCBCCHHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred cccCCCCCCCcCHHHHHHHHHHHHHHhCCCccceEEe
Confidence 1111 12778899999999999997 6653
No 81
>2xi5_A RNA polymerase L, L-protein; transferase, bunyaviridae, orthobunyavirus, aedes triseriatu hydrolase; 2.20A {Bunyavirus la crosse} PDB: 2xi7_A*
Probab=30.75 E-value=60 Score=26.61 Aligned_cols=46 Identities=11% Similarity=0.216 Sum_probs=33.8
Q ss_pred eEEEEEeeEEEEcCcc-hHHHHHHHHHHHHHHHHHHhCCceEEEEcc
Q psy1870 87 VHCFTKIEMFGVTLPE-DSEKQLEQFLQFEESLFGELGIHTRTLNMG 132 (264)
Q Consensus 87 ~reF~~~E~~~f~~pe-~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~ 132 (264)
-.++.++==|-...+. .+..++++..+....+|..||||+.+|-.-
T Consensus 85 ~~~~L~I~DyKVSVd~~Ss~~T~~KY~~~i~~~~~~lgi~~EivIIR 131 (184)
T 2xi5_A 85 INNVLYIIDYKVSVSNESSVITYDKYYELTRDISDRLSIPIEIVIIR 131 (184)
T ss_dssp ETTEEEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred ECCEEEEEEEEEEecCcchHHHHHHHHHHHHHHhhhcCCceEEEEEE
Confidence 3345554445555554 567899999999999999999998887654
No 82
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=30.14 E-value=1.1e+02 Score=28.30 Aligned_cols=89 Identities=18% Similarity=0.126 Sum_probs=43.1
Q ss_pred HHHHHHHHHhCCceEEEEccCCCcCchhhccc-ceeeecCcccccceeEecCCccchh--hcccceeecCCCceeEEecc
Q psy1870 113 QFEESLFGELGIHTRTLNMGANELGAQAYKKY-DVEAWMPGRKHWGELSSCSDCTDYQ--ARRLNIRTEDGKFAHTLNGT 189 (264)
Q Consensus 113 ~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~y-diE~w~p~~~~~~Ev~s~s~~~D~q--a~rl~i~y~~~~~~ht~~gt 189 (264)
+...++++.+|++|.+ +.+...+.+.++- -+|+..++.+....|.+ =+-|+ ...++ .+..+ .+ |.
T Consensus 265 ~~l~~~L~~~gi~~~~---d~~lvRgl~YYtg~vFe~~~~~~g~~~tI~~---GGRYD~Lv~~~g----~~~~P-av-Gf 332 (467)
T 4e51_A 265 EGLQRLLKANNVPFTI---NPRLVRGLDYYNLTVFEWVTDKLGAQGTVAA---GGRYDPLIEQLG----GKPTA-AC-GW 332 (467)
T ss_dssp HHHHHHHHHTTCCEEE---CTTCCCSCTTCCSEEEEEEECC----CEEEE---EEECTHHHHHTT----SSCCC-EE-EE
T ss_pred HHHHHHHHHcCCeEEE---cCccccCccccCCeEEEEEECCCCCcceecC---CCcHHHHHHHhC----CCCCC-ce-ee
Confidence 4445678889999664 3332223233322 34555544322222211 11121 11221 11222 23 78
Q ss_pred cccHhHHHHHHHHhccccCCceeccCCccccc
Q psy1870 190 ACAIPRLLMALVETHQNQDGTVNIPECLQPFM 221 (264)
Q Consensus 190 g~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~ 221 (264)
+++++|++.+|.++ | .+|. ++|.+
T Consensus 333 a~gleRl~~~l~~~-----~--~~~~-~~p~~ 356 (467)
T 4e51_A 333 AMGIERILELLKEE-----H--LVPE-QEGVD 356 (467)
T ss_dssp EEEHHHHHHHHHHT-----T--CCCC-CCCCS
T ss_pred hHHHHHHHHHHHhc-----C--Cccc-CCCCe
Confidence 88999999999874 3 2444 67776
No 83
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A*
Probab=27.51 E-value=88 Score=27.67 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=31.6
Q ss_pred HHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEecCCc
Q psy1870 114 FEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDC 165 (264)
Q Consensus 114 ~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~ 165 (264)
...-++..+|||.|.|..- ..|- =+|+|+|+..+|.-+-.+.+.
T Consensus 149 lf~al~Ra~GIpAR~V~Gy-------~~Ha-W~Evy~~g~~gWv~~Dpt~~~ 192 (295)
T 2f4m_A 149 CFTLCCRALGFEARYVWDY-------TDHV-WTEVYSPSQQRWLHCDACEDV 192 (295)
T ss_dssp HHHHHHHHTTCCEEEEEET-------TTEE-EEEEEETTTTEEEEEETTTTE
T ss_pred HHHHHHHHCCCCEEEEcCC-------CCEE-EEEEEECCCCeEEEEeCCcCc
Confidence 3445778999999997532 3333 369999987789988777654
No 84
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=26.63 E-value=81 Score=28.47 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEecCCccc
Q psy1870 109 EQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTD 167 (264)
Q Consensus 109 ~~~~~~~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~~D 167 (264)
.++-....-++..+|||.|.|.- ...| +=+|+|.|+.++|.-+-.|.+..|
T Consensus 185 ~e~A~lF~~llRalGi~aR~V~~-------~~~H-~W~EV~~~~~~rWv~vDp~~~~id 235 (335)
T 1x3z_A 185 GEWCNLFTLILKSFGLDVRYVWN-------REDH-VWCEYFSNFLNRWVHVDSCEQSFD 235 (335)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEEE-------TTTE-EEEEEEETTTTEEEEEETTTTEES
T ss_pred HHHHHHHHHHHHHCCCCeEEEec-------CCCc-EEEEEEECCCCCEEEECCCCCccC
Confidence 44555667788999999999842 1223 347999999889999987775433
No 85
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=26.34 E-value=87 Score=21.65 Aligned_cols=40 Identities=3% Similarity=0.031 Sum_probs=24.5
Q ss_pred eEEEEcCcchHHHHHHHHHHHHHHHHHHhCCceEEEEccC
Q psy1870 94 EMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGA 133 (264)
Q Consensus 94 E~~~f~~pe~s~~~~~~~~~~~~~i~~~Lglpyr~v~~~~ 133 (264)
....|+++.-..-...+-+..+.++|+..|++|..+++..
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~ 42 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQ 42 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTS
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCC
Confidence 3444555543221122334556789999999999988764
No 86
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=23.49 E-value=54 Score=30.05 Aligned_cols=37 Identities=8% Similarity=0.154 Sum_probs=23.6
Q ss_pred cccccHhHHHHHHHHhccccCCceeccCCccccccceeeecCC
Q psy1870 188 GTACAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRIIGDT 230 (264)
Q Consensus 188 gtg~~v~Rll~alLE~~~~~~G~i~lP~~LaP~~~~~~~i~~~ 230 (264)
|.++|++|++.+|.++.. .+|+.++|....+.+++..
T Consensus 339 GfaigieRl~~~l~~~~~------~~~~~~~~~~~~v~v~~~~ 375 (464)
T 4g84_A 339 GLSIGVERIFSIVEQRLE------ALEEKIRTTETQVLVASAQ 375 (464)
T ss_dssp EEEECHHHHHHHHHHHHH------TTTCCCCSCCCCEEEECSS
T ss_pred cccccHHHHHHHHHHhcc------ccCcccccccceEEEEeCC
Confidence 678999999988876543 3555555544434455443
No 87
>2d10_E Ezrin-radixin-moesin binding phosphoprotein 50; protein-peptide complex, cell adhesion; 2.50A {Mus musculus}
Probab=22.67 E-value=15 Score=20.92 Aligned_cols=14 Identities=21% Similarity=0.311 Sum_probs=10.7
Q ss_pred CCCCCCcccccccc
Q psy1870 229 DTRGAPSLVKVKTG 242 (264)
Q Consensus 229 ~~~~~~~~~~~~~~ 242 (264)
.++..|+++|.|+.
T Consensus 9 ~~krap~MDw~kk~ 22 (28)
T 2d10_E 9 SSKRAPQMDWSKKN 22 (28)
T ss_pred ccccCCcccHHHHH
Confidence 45568999998875
No 88
>3isr_A Transglutaminase-like enzymes, putative cysteine; protease, hutchinsoni MCSG, structural genomics; 1.90A {Cytophaga hutchinsonii}
Probab=22.09 E-value=1.2e+02 Score=26.59 Aligned_cols=48 Identities=21% Similarity=0.278 Sum_probs=30.8
Q ss_pred HHHHHHHhCCceEEEEccCCCcCchhhcccceeeecCcccccceeEecCCc
Q psy1870 115 EESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDC 165 (264)
Q Consensus 115 ~~~i~~~Lglpyr~v~~~~~dl~~~a~~~ydiE~w~p~~~~~~Ev~s~s~~ 165 (264)
...+++.+|||-|.|..-....+....|.+ .|+|+++ +|..+--..++
T Consensus 188 ~val~Ra~GIPAR~VsGy~~~~~~~~~HAW-~Evyl~g--gWv~~DpT~~~ 235 (293)
T 3isr_A 188 GIALCRALSIPARYFTGYAFKLNPPDFHAC-FEAYIGG--NWIIFDATRLV 235 (293)
T ss_dssp HHHHHHHTTCCEEEEEEEETTCSSCCEEEE-EEEEETT--EEEEECTTCCS
T ss_pred HHHHHHHCCCCEEEEEEECCCCCCCCeEEE-EEEEECC--cEEEEECCCCC
Confidence 345678999999987644333333344444 5888876 78777555544
No 89
>2d11_E Na(+)/H(+) exchange regulatory cofactor NHE-RF2; protein-peptide complex, cell adhesion; 2.81A {Mus musculus}
Probab=20.92 E-value=17 Score=20.68 Aligned_cols=14 Identities=14% Similarity=0.133 Sum_probs=10.7
Q ss_pred CCCCCCcccccccc
Q psy1870 229 DTRGAPSLVKVKTG 242 (264)
Q Consensus 229 ~~~~~~~~~~~~~~ 242 (264)
.++..|+++|.|+.
T Consensus 9 ~~krap~MDw~kk~ 22 (28)
T 2d11_E 9 VNKRAPQMDWNRKR 22 (28)
T ss_pred ccccCCcccHHHHH
Confidence 45568999998875
Done!