RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1870
(264 letters)
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS)
{Thermus thermophilus, strain hb27 [TaxId: 274]}
Length = 311
Score = 140 bits (353), Expect = 1e-40
Identities = 66/216 (30%), Positives = 109/216 (50%), Gaps = 7/216 (3%)
Query: 18 KGERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISV 77
G L+GTAE+ + + LP LP + A + +R+E
Sbjct: 92 TGHFPAYRDQVWAIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGS 151
Query: 78 VA-DEKGVYRVHCFTKIEMFGVTLP--EDSEKQLEQFLQFEESLFGELGIHTRTLNMGAN 134
D +G+ RVH F K+E + +T E S++ ++ L+ E + L + R + +
Sbjct: 152 FGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVATG 211
Query: 135 ELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDYQARRLNIRTEDG----KFAHTLNGTA 190
++G +++ D+E ++P + E SCS D+QARR N+R D ++A+TLN TA
Sbjct: 212 DMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGRVRYAYTLNNTA 271
Query: 191 CAIPRLLMALVETHQNQDGTVNIPECLQPFMFNKRI 226
A PR+L L+E HQ QDG V +P+ L P+M + +
Sbjct: 272 LATPRILAMLLENHQLQDGRVRVPQALIPYMGKEVL 307
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of
mitochondrial polymerase gamma, N-terminal domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 290
Score = 96.7 bits (240), Expect = 2e-24
Identities = 18/172 (10%), Positives = 49/172 (28%), Gaps = 11/172 (6%)
Query: 41 TAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTL 100
+ Y+ L +LP +A + C+ + V RV T+ + T
Sbjct: 119 LLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTP 178
Query: 101 PEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELS 160
S + L+ +L+ + + + + + + + + +
Sbjct: 179 TRTSSQWLDFWLRHRLLWWRKFAMSPSNFSSADCQDE---LGRKGSKLYYSFPWGKEPIE 235
Query: 161 SCSDCTDYQARRLNIRT------EDGK--FAHTLNGTACAIPRLLMALVETH 204
+ + D + DG+ + + + +A +
Sbjct: 236 TLWNLGDQELLHTYPGNVSTIQGRDGRKNVVPCVLSVSGDVDLGTLAYLYDS 287
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS)
{Arhaeon (Methanothermobacter thermautotrophicus)
[TaxId: 145262]}
Length = 265
Score = 66.5 bits (161), Expect = 2e-13
Identities = 30/181 (16%), Positives = 61/181 (33%), Gaps = 14/181 (7%)
Query: 32 YGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFT 91
L T+E + + LP + + +R E + + RV T
Sbjct: 90 LQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETK---HTRPLIRVREIT 146
Query: 92 KIEMFGVTLPED--SEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAW 149
+ +E+Q+E+ ++ + F LGI + + +
Sbjct: 147 TFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPWDKFPGSEYTVAFDTL 206
Query: 150 MPGRKHWGELSSCSDCTDYQARRLNIR--TEDGK--FAH-TLNGTACAIPRLLMALVETH 204
MP K ++ + + AR I+ T +G + H T G R++ +++ H
Sbjct: 207 MPDGKTL-QIGTVHNLGQTFARTFEIKFETPEGDHEYVHQTCYGL---SDRVIASVIAIH 262
Query: 205 Q 205
Sbjct: 263 G 263
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS)
{Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}
Length = 268
Score = 65.6 bits (159), Expect = 3e-13
Identities = 22/173 (12%), Positives = 51/173 (29%), Gaps = 8/173 (4%)
Query: 36 WCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEM 95
L T+E I + + LP +I + +R E + + R+ +
Sbjct: 97 LALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETK---HTRPLIRLREIMTFKE 153
Query: 96 FGVTLPEDSEKQLEQFLQFE--ESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPGR 153
E + + + F LGI + A + P
Sbjct: 154 AHTAHSTKEEAENQVKEAISIYKKFFDTLGIPYLISKRPEWDKFPGAEYTMAFDTIFPDG 213
Query: 154 KHWGELSSCSDCTDYQARRLNIR--TEDGKFAHTLNGTACAIPRLLMALVETH 204
+ ++++ + ++ I T G + R++ +++ H
Sbjct: 214 RTM-QIATVHNLGQNFSKTFEIIFETPTGDKDYAYQTCYGISDRVIASIIAIH 265
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus
thermophilus [TaxId: 274]}
Length = 272
Score = 61.4 bits (148), Expect = 1e-11
Identities = 27/182 (14%), Positives = 48/182 (26%), Gaps = 5/182 (2%)
Query: 25 YHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGV 84
H + T+E I LP+ + R E+
Sbjct: 91 THAGGEELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRT--RPFLR 148
Query: 85 YRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKY 144
+ + T E E+ + I E A A
Sbjct: 149 TSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTT 208
Query: 145 DVEAWMPGRKHWGELSSCSDCTDYQARRLNIR--TEDGKFAHTLNGTACAIPRLLMALVE 202
+EA M K + + + AR +I+ D + + + R + A++
Sbjct: 209 TIEALMKDGKAL-QAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGLSWRFIGAIIM 267
Query: 203 TH 204
TH
Sbjct: 268 TH 269
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus
thermophilus [TaxId: 274]}
Length = 394
Score = 43.5 bits (102), Expect = 1e-05
Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 8/113 (7%)
Query: 59 QLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQFEESL 118
+L IA + K +R EI+ ++RV F ++E+ P + E +++
Sbjct: 207 KLGFGIAQIGKAFRNEITP---RNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERLKW 263
Query: 119 FGELGI---HTRTLNMGANELGAQAYKKYDVEAWMPGRKHWGELSSCSDCTDY 168
+ E+G+ + A D+ P EL + TD+
Sbjct: 264 WQEMGLSRENLVPYQQPPESSAHYAKATVDILYRFPH--GSLELEGIAQRTDF 314
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus
thermophilus [TaxId: 274]}
Length = 331
Score = 35.9 bits (82), Expect = 0.004
Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 4/137 (2%)
Query: 33 GNGWCLSGTAEMGIARYLMNQTLPESQLPKQIAAMSKCYRAEISVVADEKGVYRVHCFTK 92
+ TA+ + +L IA + K +R EI+ ++RV F +
Sbjct: 118 LLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEIT---PRNFIFRVREFEQ 174
Query: 93 IEMFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNMGANELGAQAYKKYDVEAWMPG 152
+E+ P + E +++ + E+G+ L + A+ +
Sbjct: 175 MEIEYFVRPGEDEYWHRYWVEERLKWWQEMGLSRENLVPYQQPPESSAHYAKATVDILYR 234
Query: 153 RKH-WGELSSCSDCTDY 168
H EL + TD+
Sbjct: 235 FPHGSLELEGIAQRTDF 251
>d1go4a_ d.135.1.1 (A:) The spindle assembly checkpoint protein mad2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 196
Score = 27.9 bits (62), Expect = 0.88
Identities = 13/60 (21%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 64 IAAMSKCYRAEISVVADEKGVYRVHCFTKIEMFGVTLPEDSEKQLEQFLQ-FEESLFGEL 122
+++ + I+ + ++G+Y FT+++ +G+TL ++ +L ++L E L L
Sbjct: 10 AEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWL 69
>d2bw4a2 b.6.1.3 (A:166-338) Nitrite reductase, NIR {Alcaligenes
xylosoxidans [TaxId: 85698]}
Length = 173
Score = 26.0 bits (57), Expect = 3.3
Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 12/111 (10%)
Query: 4 GHCNALECNSKINSK-GERSQIYHLEPNYYGNGWCLSGTAEMGIARYLMNQTLPESQLPK 62
G AL + + + GER + H + N + G G + + L +
Sbjct: 57 GAVGALTGDHALTAAVGERVLVVHSQANRDTRPHLIGG---HGDYVWATGKFRNPPDLDQ 113
Query: 63 QIAAMSKCYRAEISVVADEKGVYRVHCFTKIE--------MFGVTLPEDSE 105
+ + + GVY IE F VT + +
Sbjct: 114 ETWLIPGGTAGAAFYTFRQPGVYAYVNHNLIEAFELGAAGHFKVTGEWNDD 164
>d1udxa3 d.242.1.1 (A:341-416) Obg GTP-binding protein C-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 76
Score = 24.2 bits (53), Expect = 6.8
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 7/64 (10%)
Query: 73 AEISVVADEKGVYRVHCFTKIE-MFGVTLPEDSEKQLEQFLQFEESLFGELGIHTRTLNM 131
A + VV +GVY V ++E D + + F G+
Sbjct: 2 AGVEVVPVAEGVYEVRA-PEVERYLARI-KGDLMEAAGYLQEV----FRRQGVEAALRAK 55
Query: 132 GANE 135
G
Sbjct: 56 GVRA 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.399
Gapped
Lambda K H
0.267 0.0607 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 980,875
Number of extensions: 44270
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 11
Length of query: 264
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 180
Effective length of database: 1,254,276
Effective search space: 225769680
Effective search space used: 225769680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.1 bits)