BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1871
(139 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q962Q5|RS25_SPOFR 40S ribosomal protein S25 OS=Spodoptera frugiperda GN=RpS25 PE=3
SV=1
Length = 119
Score = 143 bits (360), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 101/119 (84%), Positives = 108/119 (90%), Gaps = 1/119 (0%)
Query: 21 PPKKDTKGGSSKQPQKTQKKKEGGSGGKAKKKKWSKGKVRDKLNNQVLFDKASYDKLLKE 80
PPKKDTK S+KQPQKTQKKKEG GGKAKKKKWSKGKVRDKLNNQVLFDK +Y+KL KE
Sbjct: 2 PPKKDTK-ASAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKPTYEKLYKE 60
Query: 81 VPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRTTKGDDPVA 139
VP YKLITP+VVSERLKVRGSLAR+AL EL +KGLIKQVV+HH QVIYTR TKGDDPVA
Sbjct: 61 VPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATKGDDPVA 119
>sp|P48588|RS25_DROME 40S ribosomal protein S25 OS=Drosophila melanogaster GN=RpS25 PE=1
SV=3
Length = 117
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/116 (83%), Positives = 107/116 (92%), Gaps = 1/116 (0%)
Query: 21 PPKKDTKGGSSKQPQKTQKKKEGGSGGKAKKKKWSKGKVRDKLNNQVLFDKASYDKLLKE 80
PPKKD K S+KQPQKTQKKKEG GGKAKKKKWSKGKVRDKLNNQVLFDKA+Y+KL KE
Sbjct: 2 PPKKDAK-SSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKE 60
Query: 81 VPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRTTKGDD 136
VPAYKLITPSVVSERLK+RGSLA++AL EL +KGLIKQVV+HH+QVIYTR TKGD+
Sbjct: 61 VPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116
>sp|Q8ISN9|RS25_BRABE 40S ribosomal protein S25 OS=Branchiostoma belcheri GN=RPS25 PE=2
SV=1
Length = 123
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/116 (76%), Positives = 95/116 (81%), Gaps = 4/116 (3%)
Query: 21 PPKKDTKGGSSKQPQKTQKKKEGGSGGKAKKKKWSKGKVRDKLNNQVLFDKASYDKLLKE 80
PPKKDTKG S +K QK K G GGKAKKKKWSKGKVRDKLNN VLFDKA+YDKL KE
Sbjct: 2 PPKKDTKGDS----KKGQKAKAGSGGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLYKE 57
Query: 81 VPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRTTKGDD 136
VP+YKLITPSVVSERLK+RGSLAR AL+EL KG+IK V KH AQVIYTR TK D
Sbjct: 58 VPSYKLITPSVVSERLKIRGSLARAALKELHSKGMIKLVSKHSAQVIYTRATKDTD 113
>sp|Q6PBI5|RS25_DANRE 40S ribosomal protein S25 OS=Danio rerio GN=rps25 PE=2 SV=1
Length = 124
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/81 (80%), Positives = 69/81 (85%)
Query: 59 VRDKLNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118
VRDKLNN VLFDKA+YDKL KEVP YKLITP+VVSERLK+RGSLAR AL+ELL KGLIK
Sbjct: 39 VRDKLNNLVLFDKATYDKLYKEVPNYKLITPAVVSERLKIRGSLARAALQELLGKGLIKL 98
Query: 119 VVKHHAQVIYTRTTKGDDPVA 139
V KH AQVIYTR TKG D A
Sbjct: 99 VSKHRAQVIYTRNTKGTDEAA 119
>sp|Q6Q311|RS25_SHEEP 40S ribosomal protein S25 OS=Ovis aries GN=RPS25 PE=2 SV=1
Length = 125
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/78 (82%), Positives = 68/78 (87%)
Query: 59 VRDKLNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118
VRDKLNN VLFDKA+YDKL KEVP YKLITP+VVSERLK+RGSLAR AL+ELL KGLIK
Sbjct: 40 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKL 99
Query: 119 VVKHHAQVIYTRTTKGDD 136
V KH AQVIYTR TKG D
Sbjct: 100 VSKHRAQVIYTRNTKGGD 117
>sp|P62853|RS25_RAT 40S ribosomal protein S25 OS=Rattus norvegicus GN=Rps25 PE=2 SV=1
Length = 125
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/78 (82%), Positives = 68/78 (87%)
Query: 59 VRDKLNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118
VRDKLNN VLFDKA+YDKL KEVP YKLITP+VVSERLK+RGSLAR AL+ELL KGLIK
Sbjct: 40 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKL 99
Query: 119 VVKHHAQVIYTRTTKGDD 136
V KH AQVIYTR TKG D
Sbjct: 100 VSKHRAQVIYTRNTKGGD 117
>sp|P62852|RS25_MOUSE 40S ribosomal protein S25 OS=Mus musculus GN=Rps25 PE=2 SV=1
Length = 125
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/78 (82%), Positives = 68/78 (87%)
Query: 59 VRDKLNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118
VRDKLNN VLFDKA+YDKL KEVP YKLITP+VVSERLK+RGSLAR AL+ELL KGLIK
Sbjct: 40 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKL 99
Query: 119 VVKHHAQVIYTRTTKGDD 136
V KH AQVIYTR TKG D
Sbjct: 100 VSKHRAQVIYTRNTKGGD 117
>sp|P62851|RS25_HUMAN 40S ribosomal protein S25 OS=Homo sapiens GN=RPS25 PE=1 SV=1
Length = 125
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/78 (82%), Positives = 68/78 (87%)
Query: 59 VRDKLNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118
VRDKLNN VLFDKA+YDKL KEVP YKLITP+VVSERLK+RGSLAR AL+ELL KGLIK
Sbjct: 40 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKL 99
Query: 119 VVKHHAQVIYTRTTKGDD 136
V KH AQVIYTR TKG D
Sbjct: 100 VSKHRAQVIYTRNTKGGD 117
>sp|Q56JX5|RS25_BOVIN 40S ribosomal protein S25 OS=Bos taurus GN=RPS25 PE=2 SV=1
Length = 125
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/78 (82%), Positives = 68/78 (87%)
Query: 59 VRDKLNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118
VRDKLNN VLFDKA+YDKL KEVP YKLITP+VVSERLK+RGSLAR AL+ELL KGLIK
Sbjct: 40 VRDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKL 99
Query: 119 VVKHHAQVIYTRTTKGDD 136
V KH AQVIYTR TKG D
Sbjct: 100 VSKHRAQVIYTRNTKGGD 117
>sp|Q03409|RS25_DICDI 40S ribosomal protein S25 OS=Dictyostelium discoideum GN=rps25 PE=3
SV=1
Length = 110
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/111 (57%), Positives = 83/111 (74%), Gaps = 3/111 (2%)
Query: 21 PPKKDTKGGSSKQPQKTQKKKEGGSGGKAKKKKWSKGKVRDKLNNQVLFDKASYDKLLKE 80
PPK GG SKQ Q ++ +G SGG A +KKWSKG+ R+KLNN +LFDK +Y KLLKE
Sbjct: 2 PPK--AAGGKSKQIQASKAAAKGSSGG-AGRKKWSKGRSREKLNNAILFDKETYAKLLKE 58
Query: 81 VPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRT 131
+P K+IT +VVSER+K GSLAR+A++ELL KGLIKQ++K H +YT+
Sbjct: 59 MPTAKVITTAVVSERMKCNGSLARRAIKELLSKGLIKQIIKGHGNGVYTKA 109
>sp|P52821|RS25_CAEEL 40S ribosomal protein S25 OS=Caenorhabditis elegans GN=rps-25 PE=3
SV=1
Length = 117
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/119 (68%), Positives = 90/119 (75%), Gaps = 4/119 (3%)
Query: 21 PPKKDTKGGSSKQPQKTQKKKEGGSGGKAKKKKWSKGKVRDKLNNQVLFDKASYDKLLKE 80
PPKKD KGG K P +K+ GGKAKKKKWSKGKVRDKLNN VLFD+A+YDKL KE
Sbjct: 2 PPKKDPKGG--KAPPSKKKEGS--GGGKAKKKKWSKGKVRDKLNNMVLFDQATYDKLYKE 57
Query: 81 VPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRTTKGDDPVA 139
V YKLITPSVVSERLKVR SLA+ L+EL KGL+K VV HH QV+YTR TK D +
Sbjct: 58 VITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVHHHGQVVYTRATKEADVIV 116
>sp|Q90YP9|RS25_ICTPU 40S ribosomal protein S25 OS=Ictalurus punctatus GN=rps25 PE=2 SV=1
Length = 124
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/78 (80%), Positives = 67/78 (85%)
Query: 59 VRDKLNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118
VRDKLNN VLFDKA+YDKL KEVP YKLITP+VVSERLK+RGSLAR AL ELL KG+IK
Sbjct: 39 VRDKLNNLVLFDKATYDKLYKEVPNYKLITPAVVSERLKIRGSLARAALLELLSKGMIKL 98
Query: 119 VVKHHAQVIYTRTTKGDD 136
V KH AQVIYTR TKG D
Sbjct: 99 VSKHRAQVIYTRNTKGTD 116
>sp|Q8GYL5|RS253_ARATH 40S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3
SV=2
Length = 108
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 73/113 (64%), Gaps = 7/113 (6%)
Query: 22 PKKDTKGGSSKQPQKTQKKKEGGSGGKAKKKKWSKGKVRDKLNNQVLFDKASYDKLLKEV 81
PKKD S +P K+ K+ K+K +K+NN VLFD+A+YDKLL E
Sbjct: 3 PKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQK-------EKVNNMVLFDQATYDKLLSEA 55
Query: 82 PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRTTKG 134
P +KLITPS++S+RL++ GSLAR+A+ EL+ KG I+ V H +Q IYTR T G
Sbjct: 56 PKFKLITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATHG 108
>sp|Q9T029|RS254_ARATH 40S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2
SV=1
Length = 108
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 73/111 (65%), Gaps = 7/111 (6%)
Query: 22 PKKDTKGGSSKQPQKTQKKKEGGSGGKAKKKKWSKGKVRDKLNNQVLFDKASYDKLLKEV 81
PKKD S +P K+ K+ K+K +K+NN VLFD+A+YDKLL E
Sbjct: 3 PKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQK-------EKVNNMVLFDQATYDKLLTEA 55
Query: 82 PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRTT 132
P +KLITPS++S+R+++ GSLAR+A+ EL+ KG+I+ V H +Q IYTR T
Sbjct: 56 PKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRAT 106
>sp|Q9SIK2|RS252_ARATH 40S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2
SV=1
Length = 108
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 72/111 (64%), Gaps = 7/111 (6%)
Query: 22 PKKDTKGGSSKQPQKTQKKKEGGSGGKAKKKKWSKGKVRDKLNNQVLFDKASYDKLLKEV 81
PKKD S +P K+ K+ K+K +K+NN VLFD+ +YDKLL E
Sbjct: 3 PKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQK-------EKVNNMVLFDQGTYDKLLTEA 55
Query: 82 PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRTT 132
P +KLITPS++S+R+++ GSLAR+A+ EL+ KGLI+ V H +Q IYTR T
Sbjct: 56 PKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRAT 106
>sp|P46301|RS25_SOLLC 40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3
SV=1
Length = 108
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 71/111 (63%), Gaps = 7/111 (6%)
Query: 22 PKKDTKGGSSKQPQKTQKKKEGGSGGKAKKKKWSKGKVRDKLNNQVLFDKASYDKLLKEV 81
PKK S +P K+ K+ K+K +K+NN VLFDK++YDKLL E
Sbjct: 3 PKKAQAPPPSSKPAKSGGGKQKKKKWSKGKQK-------EKVNNMVLFDKSTYDKLLSEA 55
Query: 82 PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRTT 132
P YKLITPSV+S+RL++ GSLARKA+ +L+ +G I+ V H +Q IYTR T
Sbjct: 56 PKYKLITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAHASQQIYTRAT 106
>sp|Q9SIW5|RS251_ARATH 40S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=3
SV=3
Length = 109
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 71/111 (63%), Gaps = 7/111 (6%)
Query: 22 PKKDTKGGSSKQPQKTQKKKEGGSGGKAKKKKWSKGKVRDKLNNQVLFDKASYDKLLKEV 81
PKKD S +P K+ K+ K+K +K+NN VLFD+A+YDKL+ E
Sbjct: 3 PKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQK-------EKVNNMVLFDQATYDKLMSEA 55
Query: 82 PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRTT 132
P +KLITPS++S+RL++ GSLARKA+ +L+ KG I+ V H +Q I TR T
Sbjct: 56 PKFKLITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTHSSQQINTRAT 106
>sp|Q9N9V4|RS25_LEIIN 40S ribosomal protein S25 OS=Leishmania infantum GN=RPS25 PE=2 SV=1
Length = 120
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 61/95 (64%)
Query: 36 KTQKKKEGGSGGKAKKKKWSKGKVRDKLNNQVLFDKASYDKLLKEVPAYKLITPSVVSER 95
K K + G K KKWSKG+ R+ L N V+FDK +YDKL EVP YKLITPS++S+R
Sbjct: 9 KKAKMEAANKGAKKTTKKWSKGQSREALQNAVMFDKETYDKLRSEVPKYKLITPSIISDR 68
Query: 96 LKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTR 130
LK+ S+A L++L ++ LI+ V +YTR
Sbjct: 69 LKIAVSIAAAGLKQLCREKLIRLVSCSSKTRVYTR 103
>sp|Q94G66|RS25_AMACR 40S ribosomal protein S25 OS=Amaranthus cruentus GN=RPS25 PE=3 SV=1
Length = 114
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 73/111 (65%), Gaps = 8/111 (7%)
Query: 22 PKKDTKGGSSKQPQKTQKKKEGGSGGKAKKKKWSKGKVRDKLNNQVLFDKASYDKLLKEV 81
PKKD S +P SGGK KKKKWSKGK ++K+NN VLFD A++DKLL E
Sbjct: 3 PKKDKAPPPSSKP--------AKSGGKQKKKKWSKGKQKEKVNNLVLFDNATFDKLLSEA 54
Query: 82 PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRTT 132
K++T + +SER ++ GSLAR+A+ EL+ +G IK V H + IYTR+T
Sbjct: 55 GKQKVVTAATLSERFRINGSLARRAIRELVSRGAIKMVCHHSSLQIYTRST 105
>sp|Q3E792|RS25A_YEAST 40S ribosomal protein S25-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS25A PE=1 SV=1
Length = 108
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 52/75 (69%)
Query: 61 DKLNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120
D+ + V+ D+ YD++LKEVP Y+ ++ SV+ +RLK+ GSLAR AL L ++G+IK +
Sbjct: 34 DRAQHAVILDQEKYDRILKEVPTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPIS 93
Query: 121 KHHAQVIYTRTTKGD 135
KH Q IYTR T +
Sbjct: 94 KHSKQAIYTRATASE 108
>sp|Q7SC06|RS25_NEUCR 40S ribosomal protein S25 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rps-25
PE=3 SV=1
Length = 97
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 67/94 (71%)
Query: 43 GGSGGKAKKKKWSKGKVRDKLNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSL 102
SG K +KKKWSKGKV+DK + V+ DK++ DKL K+V +Y+L+T + + +RLK+ GSL
Sbjct: 4 AASGAKKQKKKWSKGKVKDKAQHAVILDKSTSDKLYKDVQSYRLVTVATLVDRLKINGSL 63
Query: 103 ARKALEELLQKGLIKQVVKHHAQVIYTRTTKGDD 136
AR+ L++L +KG IKQVV H IYTR D+
Sbjct: 64 ARRCLKDLEEKGQIKQVVGHSKMKIYTRAIGADE 97
>sp|O74172|RS25B_SCHPO 40S ribosomal protein S25-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps25b PE=3 SV=1
Length = 88
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 52/72 (72%)
Query: 61 DKLNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120
DK + +FDK+ D++ KEVPA+K I+ SV+ +R+K+ GSLAR A+ +L ++G+I++V
Sbjct: 14 DKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVD 73
Query: 121 KHHAQVIYTRTT 132
+H Q IYTR
Sbjct: 74 QHSKQAIYTRAA 85
>sp|P79009|RS25A_SCHPO 40S ribosomal protein S25-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps25a PE=3 SV=2
Length = 89
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 52/71 (73%)
Query: 61 DKLNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120
DK + +FDK+ D++ KEVPA+K I+ SV+ +R+K+ GSLAR A+ +L ++G+I++V
Sbjct: 14 DKAQHATVFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVD 73
Query: 121 KHHAQVIYTRT 131
+H Q IYTR
Sbjct: 74 QHSKQAIYTRV 84
>sp|P0C0T4|RS25B_YEAST 40S ribosomal protein S25-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS25B PE=1 SV=1
Length = 108
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 51/75 (68%)
Query: 61 DKLNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120
D+ + V+ D+ YD++LKEVP Y+ ++ SV+ +RLK+ GSLAR AL L ++G+IK +
Sbjct: 34 DRAQHAVILDQEKYDRILKEVPTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPIS 93
Query: 121 KHHAQVIYTRTTKGD 135
KH Q IYTR +
Sbjct: 94 KHSKQAIYTRAAASE 108
>sp|Q6FPX5|RS25_CANGA 40S ribosomal protein S25 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPS25
PE=3 SV=1
Length = 107
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 49/69 (71%)
Query: 64 NNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHH 123
+ V+ D+ +D++LKEVP Y+ ++ SV+ +RLK+ GS+AR AL L ++G+IK + KH
Sbjct: 37 QHAVILDQEKFDRILKEVPTYRYVSVSVLVDRLKIGGSMARVALRHLEREGIIKPISKHS 96
Query: 124 AQVIYTRTT 132
Q IYTR +
Sbjct: 97 KQAIYTRAS 105
>sp|Q75DJ1|RS25_ASHGO 40S ribosomal protein S25 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPS25 PE=3 SV=1
Length = 108
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 48/72 (66%)
Query: 64 NNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHH 123
+ V+ D+ D++LKEVP Y+ ++ SV+ +RLK+ GS+AR AL L +G+IK + KH
Sbjct: 37 QHAVILDQDKLDRILKEVPTYRYVSVSVLVDRLKIGGSMARVALRHLETEGIIKPISKHS 96
Query: 124 AQVIYTRTTKGD 135
Q IYTR T +
Sbjct: 97 KQAIYTRATASE 108
>sp|Q975P8|RS25_SULTO 30S ribosomal protein S25e OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=rps25e PE=3 SV=1
Length = 109
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 28 GGSSKQPQKTQKKKEGGSGGKAKKKKWSKGKVR---DKLNNQVLFDKASYDKLLKEVPAY 84
GG+SK+P T +K+ + +KK+ + + + + V+ D + K+ +E+
Sbjct: 2 GGASKKPISTVEKRMKKMAEEQQKKQQKRATTKTGKELTSKNVVIDNETLKKVQEELKKE 61
Query: 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIY 128
++TP +S +L V S+A+K LEEL ++G++K K +Y
Sbjct: 62 TIVTPYTLSTKLNVTISVAKKILEELERQGVVKIGTKDRRTAVY 105
>sp|Q8STD9|RS25_ENCCU 40S ribosomal protein S25 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RPS25-1 PE=3 SV=1
Length = 109
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%)
Query: 33 QPQKTQKKKEGGSGGKAKKKKWSKGKVRDKLNNQVLFDKASYDKLLKEVPAYKLITPSVV 92
Q K +K + SG + KKKW G+ ++++ V + K+ K+V ++T ++
Sbjct: 6 QESKEKKALKAASGTRKDKKKWGDGRKKEEVRRAVTVSEELLAKVRKDVGRASVVTRYMI 65
Query: 93 SERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYT 129
R + +A L L +G+++QV+ + IY
Sbjct: 66 GSRYNLNLGVAENVLRHLSNEGVVQQVLGNRRMTIYA 102
>sp|Q8ZVP1|RS25_PYRAE 30S ribosomal protein S25e OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rps25e PE=3 SV=1
Length = 110
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 68 LFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVI 127
+ D+ + + KEV ++ITP ++ + ++ S+A K L L ++G + V K H I
Sbjct: 44 VLDEKVFQAIAKEVQNMRVITPYEIASKYGIKMSVAFKVLRNLKERGDLVLVAKGHRTEI 103
Query: 128 YT 129
Y
Sbjct: 104 YV 105
>sp|Q97ZZ6|RS25_SULSO 30S ribosomal protein S25e OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rps25e PE=3 SV=1
Length = 110
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%)
Query: 60 RDKLNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119
++ ++ V D+ + K+L E+ +ITP ++ + + S+ARK L+EL + ++K
Sbjct: 38 KEIISRAVTIDEETKKKVLDEIKKESIITPYALATKSGISISVARKILKELENQNVVKLY 97
Query: 120 VKHHAQVIY 128
K+ IY
Sbjct: 98 SKNRRLEIY 106
>sp|P0A3V6|VIRB1_RHIRD Protein virB1 OS=Rhizobium radiobacter GN=virB1 PE=3 SV=1
Length = 239
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 2 GYLYAMETSSPMVLKSYKHPPKKDTKGGSSKQPQKT-----QKKKEGGSGGKAKKKKWSK 56
GY+ +ET++ ++ + PP+ D K S+ ++ +E G GG + +
Sbjct: 164 GYVRKVETAAQSLVPALIEPPQDDHKALKSEDTWDVWGSYQRRSQEDGVGGSIAPQPPDQ 223
Query: 57 GKVRDKLNNQVLFD 70
+ +NQVLFD
Sbjct: 224 DNGKSADDNQVLFD 237
>sp|P0A3V7|VIRB1_AGRT9 Protein virB1 OS=Agrobacterium tumefaciens (strain 15955) GN=virB1
PE=3 SV=1
Length = 239
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 2 GYLYAMETSSPMVLKSYKHPPKKDTKGGSSKQPQKT-----QKKKEGGSGGKAKKKKWSK 56
GY+ +ET++ ++ + PP+ D K S+ ++ +E G GG + +
Sbjct: 164 GYVRKVETAAQSLVPALIEPPQDDHKALKSEDTWDVWGSYQRRSQEDGVGGSIAPQPPDQ 223
Query: 57 GKVRDKLNNQVLFD 70
+ +NQVLFD
Sbjct: 224 DNGKSADDNQVLFD 237
>sp|P58397|ATS12_HUMAN A disintegrin and metalloproteinase with thrombospondin motifs 12
OS=Homo sapiens GN=ADAMTS12 PE=1 SV=2
Length = 1594
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 9 TSSPMVLKSYKHPPKKDTKGGSSKQPQKTQKKKEGGSGGKAKKKKWSKGKVRDKLNNQVL 68
TS P +L + P T + P T KEG GG K+W + +L+++ L
Sbjct: 1026 TSRPRMLTTPTGPESMSTSTPAISSPSPTTASKEGDLGG----KQWQDSSTQPELSSRYL 1081
Query: 69 FDKAS 73
S
Sbjct: 1082 ISTGS 1086
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.128 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,365,468
Number of Sequences: 539616
Number of extensions: 2198125
Number of successful extensions: 9564
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 182
Number of HSP's that attempted gapping in prelim test: 9118
Number of HSP's gapped (non-prelim): 501
length of query: 139
length of database: 191,569,459
effective HSP length: 104
effective length of query: 35
effective length of database: 135,449,395
effective search space: 4740728825
effective search space used: 4740728825
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)