Query psy1871
Match_columns 139
No_of_seqs 133 out of 219
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 18:27:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1871.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1871hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_Z RP45, S31, YS23, 40S ri 100.0 5.9E-53 2E-57 312.6 5.5 107 20-134 1-107 (108)
2 3iz6_V 40S ribosomal protein S 100.0 3E-52 1E-56 308.8 2.0 107 20-133 1-107 (108)
3 2xzm_8 RPS25E,; ribosome, tran 100.0 2.4E-48 8.2E-53 299.4 9.7 112 18-137 2-114 (143)
4 1xn7_A Hypothetical protein YH 97.3 0.00016 5.3E-09 49.6 3.4 47 73-119 3-49 (78)
5 2b0l_A GTP-sensing transcripti 97.2 0.00036 1.2E-08 49.1 4.1 47 74-120 30-77 (102)
6 2k02_A Ferrous iron transport 97.1 0.00024 8.1E-09 50.0 2.7 47 74-120 4-50 (87)
7 2jt1_A PEFI protein; solution 97.0 0.00042 1.4E-08 47.3 3.4 45 85-129 23-67 (77)
8 2htj_A P fimbrial regulatory p 96.6 0.0056 1.9E-07 40.2 6.3 44 87-130 15-59 (81)
9 3neu_A LIN1836 protein; struct 96.6 0.0043 1.5E-07 44.3 5.7 50 71-120 16-71 (125)
10 2qvo_A Uncharacterized protein 96.5 0.0059 2E-07 41.0 5.7 44 85-129 29-72 (95)
11 1p6r_A Penicillinase repressor 96.5 0.011 3.7E-07 38.5 6.7 50 86-136 23-76 (82)
12 2dk5_A DNA-directed RNA polyme 96.4 0.006 2E-07 42.5 5.3 44 86-129 36-81 (91)
13 1xmk_A Double-stranded RNA-spe 96.3 0.0056 1.9E-07 42.1 4.9 59 71-131 10-69 (79)
14 3tqn_A Transcriptional regulat 96.2 0.0068 2.3E-07 42.5 5.1 49 71-119 12-66 (113)
15 3cuo_A Uncharacterized HTH-typ 96.2 0.017 6E-07 37.7 6.7 58 73-131 25-82 (99)
16 2d1h_A ST1889, 109AA long hypo 96.2 0.011 3.8E-07 38.7 5.6 36 85-120 35-70 (109)
17 4ham_A LMO2241 protein; struct 96.1 0.0081 2.8E-07 43.1 5.1 38 82-119 34-71 (134)
18 1sfx_A Conserved hypothetical 96.1 0.013 4.4E-07 38.3 5.6 35 87-121 35-69 (109)
19 3tgn_A ADC operon repressor AD 96.1 0.0049 1.7E-07 42.6 3.7 44 76-120 42-85 (146)
20 2fu4_A Ferric uptake regulatio 96.1 0.011 3.8E-07 38.5 5.1 44 85-128 32-80 (83)
21 1qbj_A Protein (double-strande 95.9 0.0053 1.8E-07 42.0 3.2 50 71-120 9-61 (81)
22 3f8m_A GNTR-family protein tra 95.9 0.016 5.5E-07 45.6 6.4 44 82-127 32-75 (248)
23 2gxg_A 146AA long hypothetical 95.8 0.021 7.1E-07 39.3 5.7 37 84-120 48-84 (146)
24 1okr_A MECI, methicillin resis 95.7 0.024 8.1E-07 38.7 5.8 47 86-133 24-74 (123)
25 1qgp_A Protein (double strande 95.7 0.027 9.3E-07 37.7 6.0 44 77-120 22-65 (77)
26 1v4r_A Transcriptional repress 95.7 0.0059 2E-07 41.6 2.7 49 71-119 14-68 (102)
27 3by6_A Predicted transcription 95.7 0.017 5.7E-07 41.5 5.1 49 71-119 14-68 (126)
28 1oyi_A Double-stranded RNA-bin 95.6 0.015 5.2E-07 40.5 4.6 48 72-120 17-64 (82)
29 2oqg_A Possible transcriptiona 95.6 0.023 7.7E-07 38.3 5.3 43 87-130 35-77 (114)
30 3bdd_A Regulatory protein MARR 95.6 0.028 9.7E-07 38.3 5.9 44 86-129 45-90 (142)
31 3jth_A Transcription activator 95.6 0.044 1.5E-06 36.4 6.7 57 72-130 23-79 (98)
32 1r7j_A Conserved hypothetical 95.6 0.025 8.7E-07 39.1 5.6 44 74-119 10-53 (95)
33 1ub9_A Hypothetical protein PH 95.6 0.037 1.3E-06 36.1 6.2 45 85-129 29-75 (100)
34 2hs5_A Putative transcriptiona 95.5 0.026 9E-07 43.8 6.1 49 71-120 31-85 (239)
35 1tbx_A ORF F-93, hypothetical 95.5 0.032 1.1E-06 37.0 5.7 41 85-125 21-65 (99)
36 3bro_A Transcriptional regulat 95.5 0.033 1.1E-06 38.0 5.8 35 86-120 50-84 (141)
37 2pg4_A Uncharacterized protein 95.5 0.021 7.2E-07 38.0 4.7 42 87-128 31-73 (95)
38 2bv6_A MGRA, HTH-type transcri 95.5 0.024 8.1E-07 39.0 5.1 35 86-120 51-85 (142)
39 1q1h_A TFE, transcription fact 95.5 0.024 8.2E-07 38.6 5.1 33 87-119 34-66 (110)
40 3ic7_A Putative transcriptiona 95.4 0.0075 2.6E-07 43.2 2.5 50 70-119 13-68 (126)
41 3hsr_A HTH-type transcriptiona 95.4 0.044 1.5E-06 38.0 6.4 53 76-128 40-94 (140)
42 1hw1_A FADR, fatty acid metabo 95.4 0.025 8.6E-07 42.9 5.5 49 71-119 10-64 (239)
43 3r0a_A Putative transcriptiona 95.4 0.034 1.2E-06 39.3 5.9 34 87-120 43-76 (123)
44 2fbi_A Probable transcriptiona 95.4 0.035 1.2E-06 37.8 5.6 35 86-120 50-84 (142)
45 3eco_A MEPR; mutlidrug efflux 95.3 0.033 1.1E-06 38.2 5.5 35 86-120 47-81 (139)
46 2xvc_A ESCRT-III, SSO0910; cel 95.3 0.018 6E-07 38.5 3.8 42 77-118 15-57 (59)
47 3bj6_A Transcriptional regulat 95.3 0.03 1E-06 38.8 5.3 35 86-120 54-88 (152)
48 2h09_A Transcriptional regulat 95.3 0.016 5.4E-07 41.3 3.8 48 72-119 40-87 (155)
49 2pex_A Transcriptional regulat 95.3 0.028 9.7E-07 39.2 5.1 35 86-120 61-95 (153)
50 2rdp_A Putative transcriptiona 95.3 0.035 1.2E-06 38.4 5.5 35 86-120 56-90 (150)
51 1jgs_A Multiple antibiotic res 95.2 0.034 1.2E-06 37.9 5.3 44 86-129 48-93 (138)
52 3cjn_A Transcriptional regulat 95.2 0.04 1.4E-06 38.8 5.8 43 86-128 66-110 (162)
53 2fbh_A Transcriptional regulat 95.2 0.027 9.3E-07 38.5 4.7 36 85-120 51-86 (146)
54 2kko_A Possible transcriptiona 95.2 0.038 1.3E-06 38.0 5.5 44 86-130 38-81 (108)
55 2ek5_A Predicted transcription 95.2 0.024 8.2E-07 40.9 4.6 48 72-119 8-61 (129)
56 2a61_A Transcriptional regulat 95.2 0.037 1.3E-06 37.9 5.3 35 86-120 47-81 (145)
57 2nnn_A Probable transcriptiona 95.2 0.053 1.8E-06 36.8 6.0 35 86-120 52-86 (140)
58 1y0u_A Arsenical resistance op 95.1 0.04 1.4E-06 36.8 5.3 47 72-120 31-77 (96)
59 1ku9_A Hypothetical protein MJ 95.1 0.04 1.4E-06 37.6 5.4 34 87-120 42-75 (152)
60 3oop_A LIN2960 protein; protei 95.1 0.044 1.5E-06 37.8 5.7 36 85-120 50-85 (143)
61 2di3_A Bacterial regulatory pr 95.1 0.026 9E-07 43.2 4.8 48 71-118 7-60 (239)
62 3bpv_A Transcriptional regulat 95.1 0.054 1.8E-06 36.8 5.9 35 86-120 43-77 (138)
63 2hr3_A Probable transcriptiona 95.1 0.034 1.2E-06 38.3 5.0 35 86-120 50-84 (147)
64 2vn2_A DNAD, chromosome replic 95.0 0.018 6.2E-07 41.3 3.5 37 85-121 50-86 (128)
65 3eet_A Putative GNTR-family tr 95.0 0.037 1.3E-06 44.3 5.7 38 82-119 49-86 (272)
66 1wi9_A Protein C20ORF116 homol 95.0 0.025 8.4E-07 39.0 4.0 61 71-131 6-66 (72)
67 2wv0_A YVOA, HTH-type transcri 95.0 0.038 1.3E-06 43.2 5.6 38 82-119 30-67 (243)
68 1s3j_A YUSO protein; structura 95.0 0.053 1.8E-06 37.6 5.8 36 85-120 50-85 (155)
69 3k0l_A Repressor protein; heli 95.0 0.039 1.3E-06 39.2 5.1 43 86-128 60-104 (162)
70 1lj9_A Transcriptional regulat 94.9 0.044 1.5E-06 37.6 5.1 35 86-120 43-77 (144)
71 2eth_A Transcriptional regulat 94.9 0.055 1.9E-06 38.0 5.7 35 86-120 58-92 (154)
72 3s2w_A Transcriptional regulat 94.9 0.054 1.8E-06 38.2 5.6 35 86-120 64-98 (159)
73 2v79_A DNA replication protein 94.9 0.041 1.4E-06 40.4 5.2 36 84-119 49-84 (135)
74 2k4b_A Transcriptional regulat 94.9 0.053 1.8E-06 38.0 5.5 58 69-131 36-97 (99)
75 2cfx_A HTH-type transcriptiona 94.9 0.045 1.5E-06 39.1 5.2 46 70-119 7-52 (144)
76 3sxy_A Transcriptional regulat 94.9 0.034 1.2E-06 42.0 4.8 50 69-119 13-68 (218)
77 3deu_A Transcriptional regulat 94.8 0.034 1.2E-06 40.2 4.5 42 87-128 69-112 (166)
78 2qww_A Transcriptional regulat 94.8 0.042 1.4E-06 38.3 4.8 32 87-118 56-87 (154)
79 3df8_A Possible HXLR family tr 94.8 0.053 1.8E-06 37.7 5.2 42 87-130 43-85 (111)
80 2y75_A HTH-type transcriptiona 94.7 0.042 1.4E-06 38.5 4.7 36 85-120 25-60 (129)
81 3c7j_A Transcriptional regulat 94.7 0.037 1.3E-06 43.1 4.8 47 73-120 31-83 (237)
82 1z91_A Organic hydroperoxide r 94.7 0.034 1.2E-06 38.3 4.1 35 86-120 54-88 (147)
83 1z7u_A Hypothetical protein EF 94.7 0.066 2.3E-06 36.9 5.6 43 87-129 36-81 (112)
84 1r1u_A CZRA, repressor protein 94.7 0.073 2.5E-06 36.2 5.7 43 87-130 40-82 (106)
85 2hzt_A Putative HTH-type trans 94.7 0.072 2.4E-06 36.5 5.7 47 86-132 27-76 (107)
86 1sd4_A Penicillinase repressor 94.6 0.09 3.1E-06 35.9 6.1 43 87-130 25-71 (126)
87 2p5v_A Transcriptional regulat 94.6 0.057 2E-06 39.2 5.3 46 70-119 12-57 (162)
88 2lkp_A Transcriptional regulat 94.6 0.063 2.1E-06 36.7 5.3 45 86-131 45-89 (119)
89 2heo_A Z-DNA binding protein 1 94.6 0.08 2.7E-06 34.2 5.5 34 85-118 24-57 (67)
90 3bja_A Transcriptional regulat 94.6 0.045 1.5E-06 37.1 4.4 43 86-128 47-91 (139)
91 2x4h_A Hypothetical protein SS 94.6 0.044 1.5E-06 38.1 4.4 36 85-120 30-65 (139)
92 3b73_A PHIH1 repressor-like pr 94.5 0.056 1.9E-06 38.8 5.0 49 67-119 12-62 (111)
93 3g3z_A NMB1585, transcriptiona 94.5 0.039 1.3E-06 38.2 4.0 34 87-120 46-79 (145)
94 4hbl_A Transcriptional regulat 94.4 0.029 9.9E-07 39.3 3.3 44 85-128 54-99 (149)
95 3e6m_A MARR family transcripti 94.4 0.069 2.3E-06 37.9 5.2 36 85-120 66-101 (161)
96 1on2_A Transcriptional regulat 94.4 0.049 1.7E-06 38.1 4.3 34 86-119 22-55 (142)
97 2nyx_A Probable transcriptiona 94.4 0.1 3.4E-06 37.5 6.1 35 86-120 59-93 (168)
98 3nqo_A MARR-family transcripti 94.3 0.081 2.8E-06 39.1 5.6 35 86-120 57-91 (189)
99 2w25_A Probable transcriptiona 94.3 0.074 2.5E-06 38.0 5.2 46 70-119 9-54 (150)
100 3bwg_A Uncharacterized HTH-typ 94.2 0.11 3.7E-06 40.5 6.4 37 83-119 26-62 (239)
101 3cdh_A Transcriptional regulat 94.1 0.061 2.1E-06 37.6 4.3 43 77-119 48-90 (155)
102 2ia0_A Putative HTH-type trans 94.0 0.086 2.9E-06 39.3 5.3 46 70-119 19-64 (171)
103 2dbb_A Putative HTH-type trans 94.0 0.079 2.7E-06 37.8 5.0 46 70-119 11-56 (151)
104 3edp_A LIN2111 protein; APC883 93.9 0.067 2.3E-06 41.7 4.7 48 72-119 13-66 (236)
105 1u2w_A CADC repressor, cadmium 93.9 0.085 2.9E-06 37.0 4.9 45 86-131 56-100 (122)
106 2cg4_A Regulatory protein ASNC 93.9 0.084 2.9E-06 37.8 4.9 46 70-119 10-55 (152)
107 2fsw_A PG_0823 protein; alpha- 93.9 0.16 5.5E-06 34.6 6.1 45 86-130 38-85 (107)
108 3nrv_A Putative transcriptiona 93.8 0.063 2.1E-06 37.1 4.0 35 85-119 53-87 (148)
109 3f3x_A Transcriptional regulat 93.8 0.15 5.1E-06 35.1 5.9 33 88-120 52-84 (144)
110 2qc0_A Uncharacterized protein 93.8 0.05 1.7E-06 45.4 4.0 55 71-130 300-354 (373)
111 3f6o_A Probable transcriptiona 93.8 0.15 5E-06 35.4 5.8 43 87-130 32-74 (118)
112 3u2r_A Regulatory protein MARR 93.8 0.11 3.7E-06 37.1 5.2 35 86-120 62-96 (168)
113 3kp7_A Transcriptional regulat 93.8 0.041 1.4E-06 38.4 2.9 36 83-118 48-83 (151)
114 3ech_A MEXR, multidrug resista 93.8 0.048 1.6E-06 37.7 3.2 35 86-120 51-85 (142)
115 2g9w_A Conserved hypothetical 93.7 0.14 4.6E-06 36.4 5.7 43 86-129 24-70 (138)
116 3pqk_A Biofilm growth-associat 93.7 0.13 4.6E-06 34.3 5.3 44 87-131 37-80 (102)
117 1r1t_A Transcriptional repress 93.7 0.14 4.7E-06 36.2 5.6 54 76-131 50-103 (122)
118 2yu3_A DNA-directed RNA polyme 93.5 0.086 2.9E-06 37.4 4.2 36 85-120 52-87 (95)
119 4fx0_A Probable transcriptiona 93.5 0.072 2.5E-06 38.2 3.9 37 85-121 51-87 (148)
120 2frh_A SARA, staphylococcal ac 93.5 0.05 1.7E-06 37.9 2.9 35 85-119 52-86 (127)
121 1uly_A Hypothetical protein PH 93.5 0.16 5.5E-06 38.8 6.1 43 76-119 24-66 (192)
122 2v7f_A RPS19, RPS19E SSU ribos 93.4 0.063 2.2E-06 40.6 3.7 31 89-119 70-114 (150)
123 4b8x_A SCO5413, possible MARR- 93.4 0.13 4.6E-06 36.5 5.2 35 86-120 51-85 (147)
124 2fa5_A Transcriptional regulat 93.4 0.079 2.7E-06 37.1 3.9 35 85-119 62-96 (162)
125 1i1g_A Transcriptional regulat 93.4 0.079 2.7E-06 37.1 3.9 33 87-119 19-51 (141)
126 3fm5_A Transcriptional regulat 93.3 0.066 2.3E-06 37.3 3.4 33 87-119 55-87 (150)
127 4aik_A Transcriptional regulat 93.2 0.1 3.6E-06 37.4 4.4 35 86-120 46-80 (151)
128 1ylf_A RRF2 family protein; st 93.2 0.11 3.8E-06 37.7 4.6 37 85-121 29-65 (149)
129 2pn6_A ST1022, 150AA long hypo 93.1 0.096 3.3E-06 37.2 4.0 34 86-119 17-50 (150)
130 3ihu_A Transcriptional regulat 93.1 0.13 4.6E-06 38.8 5.0 49 71-120 19-73 (222)
131 1yyv_A Putative transcriptiona 93.1 0.2 7E-06 35.9 5.7 45 85-129 47-94 (131)
132 3boq_A Transcriptional regulat 93.1 0.057 1.9E-06 37.8 2.7 34 86-119 62-95 (160)
133 3t8r_A Staphylococcus aureus C 93.0 0.24 8.1E-06 36.1 6.1 40 82-121 24-63 (143)
134 3lwf_A LIN1550 protein, putati 92.9 0.25 8.4E-06 37.1 6.2 44 82-125 40-83 (159)
135 1sfu_A 34L protein; protein/Z- 92.9 0.49 1.7E-05 32.5 7.1 53 70-122 10-65 (75)
136 3cuq_B Vacuolar protein-sortin 92.7 0.15 5.1E-06 40.5 5.0 47 84-131 166-212 (218)
137 2jsc_A Transcriptional regulat 92.5 0.16 5.6E-06 35.3 4.5 44 87-131 35-78 (118)
138 2w48_A Sorbitol operon regulat 92.5 0.13 4.3E-06 41.5 4.4 35 85-119 20-55 (315)
139 3hrs_A Metalloregulator SCAR; 92.4 0.28 9.7E-06 37.6 6.1 37 83-119 17-53 (214)
140 3jw4_A Transcriptional regulat 92.3 0.064 2.2E-06 37.3 2.1 34 86-119 57-90 (148)
141 2e1c_A Putative HTH-type trans 92.3 0.086 2.9E-06 39.4 3.0 60 56-119 12-74 (171)
142 2f2e_A PA1607; transcription f 92.3 0.28 9.6E-06 35.5 5.6 35 86-120 37-71 (146)
143 2fxa_A Protease production reg 92.1 0.16 5.4E-06 38.5 4.3 34 87-120 63-96 (207)
144 3i4p_A Transcriptional regulat 91.9 0.19 6.4E-06 36.7 4.4 43 77-119 8-50 (162)
145 3f6v_A Possible transcriptiona 91.8 0.34 1.2E-05 35.7 5.7 58 72-131 58-115 (151)
146 3eqx_A FIC domain containing t 91.7 0.15 5E-06 43.1 4.0 45 84-129 309-353 (373)
147 2pjp_A Selenocysteine-specific 91.7 0.4 1.4E-05 33.8 5.7 51 71-122 6-56 (121)
148 4a5n_A Uncharacterized HTH-typ 91.4 0.35 1.2E-05 35.3 5.4 49 86-134 39-90 (131)
149 2cyy_A Putative HTH-type trans 91.4 0.1 3.5E-06 37.4 2.5 45 71-119 10-54 (151)
150 2p4w_A Transcriptional regulat 90.9 0.46 1.6E-05 36.7 5.9 44 87-130 29-76 (202)
151 3k69_A Putative transcription 90.4 0.25 8.6E-06 36.9 3.8 38 85-122 27-64 (162)
152 2vxz_A Pyrsv_GP04; viral prote 90.4 0.47 1.6E-05 37.1 5.5 43 84-126 22-64 (165)
153 3k2z_A LEXA repressor; winged 90.3 0.23 7.9E-06 37.2 3.6 34 87-120 25-58 (196)
154 1xd7_A YWNA; structural genomi 90.3 0.28 9.4E-06 35.5 3.9 34 88-121 25-58 (145)
155 2wte_A CSA3; antiviral protein 90.1 0.35 1.2E-05 38.5 4.6 33 87-119 167-199 (244)
156 2ra5_A Putative transcriptiona 89.7 0.081 2.8E-06 41.4 0.6 36 84-119 38-73 (247)
157 1u5t_B Defective in vacuolar p 89.6 0.32 1.1E-05 37.2 3.9 44 87-131 119-164 (169)
158 1fx7_A Iron-dependent represso 89.6 0.29 1E-05 37.6 3.7 34 87-120 23-58 (230)
159 2gqq_A Leucine-responsive regu 89.5 0.035 1.2E-06 40.6 -1.5 35 83-118 25-59 (163)
160 2o03_A Probable zinc uptake re 89.4 0.72 2.5E-05 32.7 5.4 46 85-130 25-75 (131)
161 2fbk_A Transcriptional regulat 88.5 0.13 4.3E-06 37.4 0.9 34 86-119 86-119 (181)
162 2xrn_A HTH-type transcriptiona 88.2 0.6 2E-05 36.1 4.6 34 86-119 21-54 (241)
163 2fe3_A Peroxide operon regulat 87.5 0.87 3E-05 32.8 4.9 45 85-129 36-85 (145)
164 1mkm_A ICLR transcriptional re 87.5 0.74 2.5E-05 35.6 4.8 34 86-119 23-56 (249)
165 1bia_A BIRA bifunctional prote 87.5 0.9 3.1E-05 36.9 5.5 49 73-121 6-54 (321)
166 2p5k_A Arginine repressor; DNA 87.4 1.4 4.9E-05 26.6 5.2 40 85-128 18-62 (64)
167 2ve8_A FTSK, DNA translocase F 87.3 0.26 8.8E-06 33.8 1.8 59 71-129 9-67 (73)
168 2qq9_A Diphtheria toxin repres 87.3 0.52 1.8E-05 36.2 3.8 32 88-119 26-57 (226)
169 2xig_A Ferric uptake regulatio 87.2 1.3 4.6E-05 32.2 5.8 45 86-130 42-91 (150)
170 1w7p_D VPS36P, YLR417W; ESCRT- 87.0 1.2 4.3E-05 40.2 6.6 60 71-131 493-559 (566)
171 3r4k_A Transcriptional regulat 87.0 0.85 2.9E-05 35.7 4.9 44 77-120 11-55 (260)
172 1hsj_A Fusion protein consisti 86.9 0.42 1.4E-05 39.4 3.2 35 86-120 420-454 (487)
173 2w57_A Ferric uptake regulatio 86.8 1.4 4.7E-05 32.1 5.6 45 85-129 32-81 (150)
174 3cuq_A Vacuolar-sorting protei 86.7 0.52 1.8E-05 38.2 3.6 46 83-128 165-210 (234)
175 3ryp_A Catabolite gene activat 86.4 1.3 4.4E-05 31.5 5.2 33 86-118 167-199 (210)
176 1mzb_A Ferric uptake regulatio 86.4 0.97 3.3E-05 32.2 4.6 45 85-129 33-82 (136)
177 2zkz_A Transcriptional repress 86.3 1 3.5E-05 30.2 4.4 43 87-131 42-84 (99)
178 2zcw_A TTHA1359, transcription 86.1 1.2 4.1E-05 31.9 5.0 32 87-118 147-178 (202)
179 2qlz_A Transcription factor PF 85.9 0.58 2E-05 37.2 3.4 44 87-130 26-74 (232)
180 1p4x_A Staphylococcal accessor 85.8 0.93 3.2E-05 35.9 4.6 35 86-120 174-208 (250)
181 3dv8_A Transcriptional regulat 85.6 1.4 4.7E-05 31.6 5.1 33 86-118 169-201 (220)
182 3cta_A Riboflavin kinase; stru 85.6 1.7 5.9E-05 33.0 5.9 38 83-120 24-61 (230)
183 2obp_A Putative DNA-binding pr 85.5 1.3 4.6E-05 31.1 4.8 39 82-121 33-71 (96)
184 4ev0_A Transcription regulator 85.2 1.5 5E-05 31.3 5.1 34 85-118 162-195 (216)
185 3dkw_A DNR protein; CRP-FNR, H 84.9 1.2 3.9E-05 32.2 4.4 32 87-118 179-210 (227)
186 2o0y_A Transcriptional regulat 84.4 1 3.5E-05 35.2 4.2 35 85-119 37-71 (260)
187 3d0s_A Transcriptional regulat 84.2 1.7 5.8E-05 31.5 5.1 32 87-118 178-209 (227)
188 2oz6_A Virulence factor regula 84.1 1.2 4.1E-05 31.6 4.1 33 86-118 164-196 (207)
189 3hh0_A Transcriptional regulat 83.8 0.73 2.5E-05 33.9 2.9 42 86-131 4-46 (146)
190 3gpv_A Transcriptional regulat 83.8 0.7 2.4E-05 33.9 2.8 46 82-131 10-58 (148)
191 1stz_A Heat-inducible transcri 83.7 0.61 2.1E-05 38.8 2.8 40 81-120 31-72 (338)
192 2g7u_A Transcriptional regulat 83.7 1.1 3.9E-05 34.8 4.2 44 76-119 18-62 (257)
193 3f8b_A Transcriptional regulat 83.7 2.5 8.5E-05 29.5 5.6 42 88-129 27-80 (116)
194 1xma_A Predicted transcription 83.4 2.7 9.3E-05 30.7 5.9 43 87-129 55-109 (145)
195 2o0m_A Transcriptional regulat 83.4 0.22 7.7E-06 40.7 0.0 43 76-118 24-66 (345)
196 3iwz_A CAP-like, catabolite ac 83.0 1.4 4.7E-05 31.8 4.1 32 87-118 188-219 (230)
197 2gau_A Transcriptional regulat 83.0 1.4 4.6E-05 32.1 4.1 33 86-118 180-212 (232)
198 3mwm_A ZUR, putative metal upt 83.0 2.4 8.1E-05 30.4 5.4 47 85-131 28-79 (139)
199 2ia2_A Putative transcriptiona 82.6 1.2 4.1E-05 34.9 4.0 43 77-119 26-69 (265)
200 1j5y_A Transcriptional regulat 82.5 1.3 4.5E-05 33.0 4.0 45 74-118 23-69 (187)
201 2p8t_A Hypothetical protein PH 82.3 2.5 8.7E-05 33.3 5.7 50 67-118 13-62 (200)
202 1u5t_A Appears to BE functiona 82.0 1.5 5.1E-05 35.5 4.3 46 83-128 178-223 (233)
203 2pjp_A Selenocysteine-specific 82.0 0.97 3.3E-05 31.7 2.9 59 62-120 52-114 (121)
204 3mq0_A Transcriptional repress 81.8 1 3.5E-05 35.7 3.3 34 86-119 45-78 (275)
205 2hoe_A N-acetylglucosamine kin 81.8 2.1 7.3E-05 34.8 5.3 35 86-120 33-67 (380)
206 3la7_A Global nitrogen regulat 81.3 1.7 5.7E-05 32.3 4.1 32 87-118 194-225 (243)
207 3kcc_A Catabolite gene activat 81.2 2.4 8.1E-05 32.0 5.0 33 86-118 217-249 (260)
208 3eyy_A Putative iron uptake re 81.2 2.7 9.2E-05 30.3 5.1 44 86-129 33-81 (145)
209 3e97_A Transcriptional regulat 81.0 1.8 6.1E-05 31.4 4.1 33 86-118 175-207 (231)
210 2fmy_A COOA, carbon monoxide o 80.9 1.8 6E-05 31.3 4.0 33 86-118 167-199 (220)
211 1ft9_A Carbon monoxide oxidati 80.9 1.6 5.5E-05 31.7 3.8 32 87-118 164-195 (222)
212 4esf_A PADR-like transcription 80.7 3.9 0.00013 28.7 5.7 43 87-129 25-77 (117)
213 3b02_A Transcriptional regulat 80.4 1.6 5.5E-05 31.1 3.7 33 86-118 139-171 (195)
214 3i71_A Ethanolamine utilizatio 80.4 3.8 0.00013 27.6 5.2 33 87-119 19-51 (68)
215 2esh_A Conserved hypothetical 80.0 2.2 7.6E-05 29.5 4.2 43 87-129 27-81 (118)
216 4a0z_A Transcription factor FA 80.0 0.51 1.7E-05 36.3 0.9 48 72-119 12-59 (190)
217 3e6c_C CPRK, cyclic nucleotide 79.8 2 6.8E-05 31.9 4.1 32 87-118 178-209 (250)
218 1r8d_A Transcription activator 79.7 1.3 4.6E-05 30.4 2.9 41 87-131 3-44 (109)
219 2qlz_A Transcription factor PF 79.5 2 7E-05 34.0 4.3 42 85-127 177-218 (232)
220 3l7w_A Putative uncharacterize 79.5 4.5 0.00015 27.6 5.6 42 88-129 24-72 (108)
221 1zyb_A Transcription regulator 79.4 1.9 6.6E-05 31.7 3.9 33 86-118 186-218 (232)
222 1z05_A Transcriptional regulat 78.7 1.4 4.8E-05 36.5 3.3 44 77-120 44-87 (429)
223 1bja_A Transcription regulator 78.6 2 7E-05 30.3 3.6 32 86-117 30-62 (95)
224 1z6r_A MLC protein; transcript 78.5 1.6 5.3E-05 35.7 3.4 44 76-119 20-63 (406)
225 2r3s_A Uncharacterized protein 78.0 2.5 8.7E-05 32.7 4.4 33 86-118 39-71 (335)
226 2zhg_A Redox-sensitive transcr 78.0 2 6.9E-05 31.8 3.6 43 85-131 10-52 (154)
227 4esb_A Transcriptional regulat 77.7 5.6 0.00019 27.7 5.7 43 87-129 23-75 (115)
228 3lmm_A Uncharacterized protein 77.1 0.49 1.7E-05 42.1 0.0 54 76-130 520-573 (583)
229 3u5c_T 40S ribosomal protein S 76.7 1.8 6.1E-05 33.1 3.0 23 98-120 96-118 (144)
230 3hhh_A Transcriptional regulat 76.6 6.2 0.00021 27.7 5.7 42 88-129 28-79 (116)
231 1r8e_A Multidrug-efflux transp 76.3 2.7 9.2E-05 32.3 4.0 43 85-131 4-48 (278)
232 3iz6_S 40S ribosomal protein S 75.7 1.9 6.5E-05 33.0 3.0 24 97-120 97-120 (146)
233 2vz4_A Tipal, HTH-type transcr 75.4 1.9 6.4E-05 29.7 2.7 41 87-131 2-43 (108)
234 3tdu_C Cullin-1, CUL-1; E2:E3, 75.3 3.7 0.00013 27.7 4.1 40 90-129 37-76 (77)
235 3mcz_A O-methyltransferase; ad 75.1 3.1 0.00011 32.7 4.2 34 86-119 56-89 (352)
236 1qzz_A RDMB, aclacinomycin-10- 74.6 4.7 0.00016 31.8 5.2 43 72-119 40-82 (374)
237 3qph_A TRMB, A global transcri 74.6 0.54 1.9E-05 38.9 -0.4 42 87-130 33-74 (342)
238 1p4x_A Staphylococcal accessor 74.2 2 6.9E-05 33.9 2.9 34 86-119 50-83 (250)
239 2bgc_A PRFA; bacterial infecti 74.2 3.1 0.00011 30.6 3.8 32 87-118 170-202 (238)
240 2jml_A DNA binding domain/tran 74.1 2.2 7.5E-05 27.8 2.6 41 86-130 5-47 (81)
241 3i53_A O-methyltransferase; CO 73.9 3.1 0.0001 32.6 3.9 43 72-119 29-71 (332)
242 3lst_A CALO1 methyltransferase 73.5 3.6 0.00012 32.7 4.2 33 86-118 55-87 (348)
243 2ip2_A Probable phenazine-spec 73.5 3.5 0.00012 32.1 4.1 43 72-119 32-74 (334)
244 3fx3_A Cyclic nucleotide-bindi 73.3 3.7 0.00013 29.9 3.9 29 87-115 179-207 (237)
245 3elk_A Putative transcriptiona 72.6 6.5 0.00022 27.5 5.0 43 87-129 28-80 (117)
246 1x19_A CRTF-related protein; m 72.4 3.9 0.00013 32.4 4.2 43 72-119 55-97 (359)
247 1tw3_A COMT, carminomycin 4-O- 72.4 4.3 0.00015 32.0 4.4 43 72-119 43-85 (360)
248 3gwz_A MMCR; methyltransferase 71.9 3.6 0.00012 33.1 4.0 35 86-120 71-105 (369)
249 1yg2_A Gene activator APHA; vi 71.8 4.4 0.00015 29.9 4.1 34 87-120 16-57 (179)
250 3dp7_A SAM-dependent methyltra 70.8 3.8 0.00013 32.9 3.8 43 72-118 39-82 (363)
251 2xzm_T RPS19E; ribosome, trans 70.4 3.6 0.00012 31.7 3.4 20 99-118 100-119 (155)
252 3e0j_B DNA polymerase subunit 70.3 4.4 0.00015 30.5 3.8 45 69-113 2-47 (144)
253 1zg3_A Isoflavanone 4'-O-methy 70.0 5.5 0.00019 31.7 4.6 45 72-119 34-81 (358)
254 3rkx_A Biotin-[acetyl-COA-carb 69.3 7 0.00024 32.0 5.2 34 85-118 18-51 (323)
255 1fp1_D Isoliquiritigenin 2'-O- 69.0 4.7 0.00016 32.3 4.0 47 72-119 48-101 (372)
256 1q06_A Transcriptional regulat 68.9 3.6 0.00012 29.5 3.0 41 87-131 1-42 (135)
257 3qao_A LMO0526 protein, MERR-l 68.9 3.8 0.00013 32.5 3.4 42 86-131 3-45 (249)
258 1fp2_A Isoflavone O-methyltran 68.0 6.5 0.00022 31.2 4.6 45 72-119 40-87 (352)
259 1tc3_C Protein (TC3 transposas 67.8 2.2 7.7E-05 23.4 1.4 28 87-114 22-49 (51)
260 2co5_A Viral protein F93; vira 66.3 11 0.00037 26.0 5.0 40 90-130 32-73 (99)
261 3o2p_E Cell division control p 65.8 7.5 0.00026 26.9 4.0 39 90-129 49-87 (88)
262 1t6s_A Conserved hypothetical 65.6 4.8 0.00017 30.6 3.3 43 85-130 107-152 (162)
263 4hv0_A AVTR; ribbon-helix-heli 65.6 6.8 0.00023 28.6 3.9 35 66-112 2-37 (106)
264 3gp4_A Transcriptional regulat 65.3 2.9 9.9E-05 30.5 1.9 40 87-130 3-43 (142)
265 4a6d_A Hydroxyindole O-methylt 65.1 10 0.00035 30.4 5.3 54 72-129 32-85 (353)
266 3p9c_A Caffeic acid O-methyltr 65.1 6.2 0.00021 31.9 4.0 47 72-120 44-95 (364)
267 1o5l_A Transcriptional regulat 64.7 1.4 4.6E-05 32.1 0.0 33 86-118 164-196 (213)
268 3ri2_A Transcriptional regulat 61.3 21 0.0007 25.3 5.8 43 87-129 34-84 (123)
269 1lva_A Selenocysteine-specific 61.3 7.7 0.00026 30.5 3.8 59 62-120 189-250 (258)
270 1b4a_A Arginine repressor; hel 61.2 8.9 0.00031 28.6 4.0 54 74-131 7-65 (149)
271 3u1d_A Uncharacterized protein 61.1 19 0.00065 27.1 5.8 36 85-120 44-80 (151)
272 3l09_A Putative transcriptiona 57.9 17 0.00058 29.5 5.4 38 91-129 50-87 (266)
273 2dql_A PEX protein; circadian 57.8 22 0.00075 24.6 5.3 25 96-120 52-76 (115)
274 1iuy_A Cullin-3 homologue; win 57.8 11 0.00038 26.1 3.7 40 90-129 52-91 (92)
275 1lva_A Selenocysteine-specific 57.3 13 0.00043 29.2 4.4 50 73-122 142-193 (258)
276 2e1n_A PEX, period extender; c 57.2 30 0.001 25.0 6.1 37 96-132 64-105 (138)
277 2z99_A Putative uncharacterize 56.9 9.9 0.00034 30.4 3.8 33 85-120 113-145 (219)
278 3pfi_A Holliday junction ATP-d 56.4 10 0.00034 29.4 3.6 49 71-121 266-315 (338)
279 4ets_A Ferric uptake regulatio 56.4 10 0.00036 27.9 3.6 45 85-129 47-98 (162)
280 3lmm_A Uncharacterized protein 55.4 6.2 0.00021 35.0 2.6 43 77-119 435-482 (583)
281 1zel_A Hypothetical protein RV 55.4 11 0.00039 31.7 4.0 56 72-131 20-78 (298)
282 2dg6_A Putative transcriptiona 55.3 4.9 0.00017 31.7 1.7 40 88-131 2-42 (222)
283 2zfw_A PEX; five alpha-helices 54.7 25 0.00084 25.9 5.4 48 88-135 59-118 (148)
284 3v4g_A Arginine repressor; vib 52.5 22 0.00074 27.7 4.9 52 63-131 42-94 (180)
285 2kfs_A Conserved hypothetical 51.7 11 0.00036 28.7 3.0 34 85-122 30-63 (148)
286 4g6q_A Putative uncharacterize 51.2 23 0.00077 26.3 4.8 58 72-130 23-85 (182)
287 2iut_A DNA translocase FTSK; n 50.5 3.3 0.00011 37.3 0.0 60 70-129 501-560 (574)
288 1ufm_A COP9 complex subunit 4; 49.4 55 0.0019 21.9 6.1 49 83-131 27-76 (84)
289 2ius_A DNA translocase FTSK; n 48.6 3.7 0.00013 36.2 0.0 59 71-129 449-507 (512)
290 3l9f_A Putative uncharacterize 47.9 23 0.0008 27.2 4.5 44 87-130 50-105 (204)
291 3reo_A (ISO)eugenol O-methyltr 46.4 19 0.00063 29.0 3.8 47 72-119 45-96 (368)
292 1t1e_A Kumamolisin; proenzyme, 45.5 50 0.0017 29.0 6.7 61 70-130 50-115 (552)
293 2k9i_A Plasmid PRN1, complete 45.1 44 0.0015 19.4 4.5 37 64-112 11-48 (55)
294 1jhf_A LEXA repressor; LEXA SO 45.0 26 0.00088 25.6 4.2 31 88-118 27-58 (202)
295 2jn6_A Protein CGL2762, transp 43.1 24 0.00081 22.9 3.4 47 69-115 6-52 (97)
296 2og0_A Excisionase; protein-DN 43.1 22 0.00075 22.3 3.0 38 86-125 2-40 (52)
297 2pi2_A Replication protein A 3 41.3 5.6 0.00019 31.7 0.0 39 79-117 217-256 (270)
298 3qyf_A Crispr-associated prote 38.9 14 0.00048 31.3 2.1 45 67-119 207-251 (324)
299 4b4t_R RPN7, 26S proteasome re 38.8 47 0.0016 27.5 5.2 47 84-130 345-391 (429)
300 2qen_A Walker-type ATPase; unk 38.7 38 0.0013 25.5 4.3 33 87-119 296-333 (350)
301 1jko_C HIN recombinase, DNA-in 37.7 8.6 0.0003 21.4 0.4 23 87-109 22-44 (52)
302 1fse_A GERE; helix-turn-helix 37.3 30 0.001 20.7 3.0 25 88-112 28-52 (74)
303 3edy_A Tripeptidyl-peptidase 1 36.3 76 0.0026 28.0 6.4 61 70-130 38-104 (544)
304 1z4h_A TORI, TOR inhibition pr 36.2 42 0.0014 20.8 3.6 45 81-130 5-50 (66)
305 1j9i_A GPNU1 DBD;, terminase s 35.4 26 0.00091 21.7 2.5 40 86-131 2-44 (68)
306 2jpc_A SSRB; DNA binding prote 33.5 34 0.0011 20.0 2.7 25 88-112 15-39 (61)
307 3cuq_C Vacuolar protein-sortin 33.2 1.1E+02 0.0037 23.5 6.2 49 73-121 111-167 (176)
308 1pdn_C Protein (PRD paired); p 33.1 38 0.0013 21.9 3.1 48 69-118 18-65 (128)
309 3dpl_C Cullin-5; ubiquitin, NE 33.0 39 0.0013 28.1 3.8 40 90-129 342-381 (382)
310 1tzy_B Histone H2B; histone-fo 32.0 29 0.00098 25.9 2.6 44 66-109 63-114 (126)
311 2elh_A CG11849-PA, LD40883P; s 31.2 49 0.0017 21.3 3.4 26 87-112 39-64 (87)
312 2cpg_A REPA protein, transcrip 31.1 73 0.0025 17.8 4.4 35 66-112 6-41 (45)
313 1xb4_A VPS25, hypothetical 23. 30.5 1.1E+02 0.0039 23.9 6.0 51 72-122 134-192 (202)
314 1cf7_A Protein (transcription 29.7 78 0.0027 21.0 4.2 42 85-126 29-71 (76)
315 2o8x_A Probable RNA polymerase 29.4 49 0.0017 19.5 3.0 24 87-110 32-55 (70)
316 1x3u_A Transcriptional regulat 29.4 48 0.0016 20.2 3.0 27 87-113 32-58 (79)
317 2lnb_A Z-DNA-binding protein 1 28.7 84 0.0029 21.8 4.3 46 73-118 20-66 (80)
318 1pm6_A Excisionase; antiparall 28.6 41 0.0014 22.4 2.7 30 86-117 2-31 (72)
319 1k78_A Paired box protein PAX5 28.5 48 0.0016 22.8 3.2 48 69-118 33-80 (149)
320 3txn_A 26S proteasome regulato 28.3 1.1E+02 0.0038 25.8 5.9 50 82-131 312-361 (394)
321 3k9t_A Putative peptidase; str 28.0 48 0.0017 29.1 3.7 31 88-118 404-434 (435)
322 2nqb_D Histone H2B; nucleosome 27.4 42 0.0014 24.9 2.8 45 65-109 59-111 (123)
323 1hst_A Histone H5; chromosomal 27.4 86 0.0029 21.3 4.2 31 100-130 47-77 (90)
324 2l0k_A Stage III sporulation p 27.3 25 0.00086 24.2 1.5 23 87-109 21-43 (93)
325 3ez9_A Para; DNA binding, wing 27.0 81 0.0028 25.4 4.7 52 77-128 33-85 (403)
326 2fq3_A Transcription regulator 26.8 54 0.0018 23.4 3.2 46 71-117 46-98 (104)
327 1nd9_A Translation initiation 26.1 59 0.002 18.4 2.8 26 87-115 3-28 (49)
328 2dul_A N(2),N(2)-dimethylguano 25.8 1.4E+02 0.0049 24.5 6.1 60 72-131 307-366 (378)
329 3kfw_X Uncharacterized protein 25.0 60 0.002 25.8 3.5 31 89-119 26-56 (247)
330 1t6s_A Conserved hypothetical 24.9 1.8E+02 0.0063 21.7 6.1 45 87-132 23-75 (162)
331 1je8_A Nitrate/nitrite respons 24.7 62 0.0021 20.6 3.0 26 87-112 37-62 (82)
332 2qby_A CDC6 homolog 1, cell di 24.1 73 0.0025 24.2 3.7 31 90-120 316-349 (386)
333 1y6u_A XIS, excisionase from t 23.6 87 0.003 20.2 3.6 29 79-107 7-37 (70)
334 1hqc_A RUVB; extended AAA-ATPa 23.5 1.1E+02 0.0038 23.0 4.6 47 71-118 250-297 (324)
335 2v9v_A Selenocysteine-specific 23.3 1.7E+02 0.0059 19.6 6.0 51 68-118 58-121 (135)
336 4asn_A TUBR; transcription, tu 23.2 1.5E+02 0.0052 21.0 5.0 48 83-130 31-78 (101)
337 2p7v_B Sigma-70, RNA polymeras 22.3 91 0.0031 18.7 3.3 27 86-112 25-51 (68)
338 2qm3_A Predicted methyltransfe 22.3 84 0.0029 25.2 3.9 32 87-118 56-87 (373)
339 3vc8_A RNA-directed RNA polyme 22.2 60 0.0021 23.1 2.7 26 61-86 9-34 (94)
340 1gng_X Frattide, glycogen synt 22.1 44 0.0015 20.4 1.7 28 88-115 11-38 (39)
341 3lap_A Arginine repressor; arg 21.6 1E+02 0.0034 23.4 4.0 58 58-131 24-81 (170)
342 2k27_A Paired box protein PAX- 21.6 42 0.0014 23.5 1.8 42 75-119 93-144 (159)
343 2do7_A Cullin-4B, CUL-4B; heli 21.2 1.6E+02 0.0054 20.6 4.8 37 96-132 61-97 (101)
344 2co9_A Thymus high mobility gr 21.0 50 0.0017 22.2 2.0 37 56-95 15-51 (102)
345 2jrt_A Uncharacterized protein 20.9 56 0.0019 22.4 2.3 33 86-118 49-81 (95)
346 2ovi_A Hypothetical protein CH 20.4 1.1E+02 0.0037 22.8 4.0 54 73-129 5-74 (164)
347 1uxc_A FRUR (1-57), fructose r 20.1 73 0.0025 20.0 2.6 19 97-115 29-47 (65)
No 1
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=100.00 E-value=5.9e-53 Score=312.56 Aligned_cols=107 Identities=45% Similarity=0.766 Sum_probs=69.8
Q ss_pred CCCCCCCCCCCCCCcchhhhhhccCCCCccccccccchhhhhhhccceeeCHHHHHHHHhhCCCCeeechHHHHhhhccc
Q psy1871 20 HPPKKDTKGGSSKQPQKTQKKKEGGSGGKAKKKKWSKGKVRDKLNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVR 99 (139)
Q Consensus 20 mppK~~~~~~~~~~~~~~~k~~~a~sggk~kKKKWSKgKvkdKlnn~Vl~Dk~tydKl~KEVpk~KlITPsvlseRlkI~ 99 (139)
||||+++.+ +++++++++||+++||||||||+|||+||+|+||++|||||++|||+|+|||||+|||||+|+
T Consensus 1 M~pK~~~sk--------~~k~~~a~~ggk~~KKKWsKgk~kdK~nn~VlfDk~t~dkl~KEVpk~KlITpsvlseRlkI~ 72 (108)
T 3u5c_Z 1 MPPKQQLSK--------AAKAAAALAGGKKSKKKWSKKSMKDRAQHAVILDQEKYDRILKEVPTYRYVSVSVLVDRLKIG 72 (108)
T ss_dssp -------------------------------------------CCSCSSCTTHHHHHHHHHCSSCSSBSHHHHHHTTCCC
T ss_pred CCCccccCH--------HHHHHHHhcCCCccccccccccHHHHhhcceeeCHHHHHHHHHHccCCeEEeHHHhhhhhhhh
Confidence 999976665 477888999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCeeEEeecCceEEEeccCCC
Q psy1871 100 GSLARKALEELLQKGLIKQVVKHHAQVIYTRTTKG 134 (139)
Q Consensus 100 ~SLARkaLreL~~kGlIk~Vskh~~q~IYtra~k~ 134 (139)
|||||++||||+++|+|++|++||+|.||||+++.
T Consensus 73 gSLAR~aLreL~~kGlIk~V~kh~~q~IYTr~~~~ 107 (108)
T 3u5c_Z 73 GSLARIALRHLEKEGIIKPISKHSKQAIYTRATAS 107 (108)
T ss_dssp TTHHHHHHHHHSSSSSCEEEECCSSCCEEECCC--
T ss_pred HHHHHHHHHHHHHCCCEEEEecCCCEEEEecCccC
Confidence 99999999999999999999999999999999864
No 2
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3e-52 Score=308.78 Aligned_cols=107 Identities=58% Similarity=0.896 Sum_probs=94.1
Q ss_pred CCCCCCCCCCCCCCcchhhhhhccCCCCccccccccchhhhhhhccceeeCHHHHHHHHhhCCCCeeechHHHHhhhccc
Q psy1871 20 HPPKKDTKGGSSKQPQKTQKKKEGGSGGKAKKKKWSKGKVRDKLNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVR 99 (139)
Q Consensus 20 mppK~~~~~~~~~~~~~~~k~~~a~sggk~kKKKWSKgKvkdKlnn~Vl~Dk~tydKl~KEVpk~KlITPsvlseRlkI~ 99 (139)
||||.+++.+ +++++++++||+++||||||||+|||+||+|+||++|||||++|||+|+|||||+|||||+|+
T Consensus 1 m~pk~~~~~k-------~~~~~~a~~ggk~~KKKWsKgk~kdk~nn~Vl~Dk~t~dkl~KEVpk~KlITpsvlseRlkI~ 73 (108)
T 3iz6_V 1 MAPKKDKAPP-------PSSKPAKSGGGKQKKKKWSKGKQKEKVNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLRIN 73 (108)
T ss_dssp --------CC-------CCCCCCTTCCCCCCCCSCCCCCCSHHHHSHHHHSSHHHHHHHHHHHHHSSEEEHHHHHHHHTC
T ss_pred CCCcccccCH-------HHHHHHHhcCCCccccccccccHHHHhcCcEeECHHHHHHHHHHccCCeEEeHHHHHhhhccc
Confidence 9999555433 356668999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCeeEEeecCceEEEeccCC
Q psy1871 100 GSLARKALEELLQKGLIKQVVKHHAQVIYTRTTK 133 (139)
Q Consensus 100 ~SLARkaLreL~~kGlIk~Vskh~~q~IYtra~k 133 (139)
|||||++||||+++|+|++|++||+|.||||++.
T Consensus 74 gSLAR~aLreL~~kGlIk~V~kh~~q~IYTr~~~ 107 (108)
T 3iz6_V 74 GSLARQAIKDLESRGAIRVVSVHSSQLIYTRATN 107 (108)
T ss_dssp CHHHHHHHHHHHHHHTSCEECCCTTSCCEEESCC
T ss_pred HHHHHHHHHHHHHCCCEEEEecCCCEEEEecCcC
Confidence 9999999999999999999999999999999974
No 3
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=100.00 E-value=2.4e-48 Score=299.41 Aligned_cols=112 Identities=31% Similarity=0.494 Sum_probs=88.8
Q ss_pred ccCCCCCCCCCCCCCCcchhhhhhccCCCCccccccccchhhhhhhccceeeCHHHHHHHHhhCCCC-eeechHHHHhhh
Q psy1871 18 YKHPPKKDTKGGSSKQPQKTQKKKEGGSGGKAKKKKWSKGKVRDKLNNQVLFDKASYDKLLKEVPAY-KLITPSVVSERL 96 (139)
Q Consensus 18 ~~mppK~~~~~~~~~~~~~~~k~~~a~sggk~kKKKWSKgKvkdKlnn~Vl~Dk~tydKl~KEVpk~-KlITPsvlseRl 96 (139)
..||||++++.+ ++++++++ +|+++||||||||+|||+||+|+||++|||||++|||+| +|||||+|||||
T Consensus 2 ~~mppk~~~k~k-------~~~~~~a~-~gk~kKKKWSKgKvkdK~nn~VlfDk~tydKL~KEVpk~gKlITpsvlseRl 73 (143)
T 2xzm_8 2 GKQPAAGQKKTK-------EAIAKAAQ-AKKGGKKKWTKGKAKDKVNHAVFIEKKNVESIINNPSKVGKVLTVSTVVEKL 73 (143)
T ss_dssp -----------------------------CCCCSSCCCSSCCCCCCCCBSCCCHHHHHHHHTCCTTSCSEECHHHHHHHH
T ss_pred CCCCCcccccch-------hHHHHhhc-cCccccCCcccchHHHHHhcceeecHHHHHHHHHHhcccceeecHHHHHHHh
Confidence 359999544332 23334444 489999999999999999999999999999999999999 999999999999
Q ss_pred ccchHHHHHHHHHHHHcCCeeEEeecCceEEEeccCCCCCC
Q psy1871 97 KVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRTTKGDDP 137 (139)
Q Consensus 97 kI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtra~k~~~~ 137 (139)
+||+||||++||||+++|+|++|++||+|.||||+++++++
T Consensus 74 kI~gSLARkaLreL~~kGlIk~V~kh~~q~IYTra~~~~~~ 114 (143)
T 2xzm_8 74 KVNGSLARQLMRTMADRKLVEKVAKNGNQWVYSVIGGVKED 114 (143)
T ss_dssp CBCHHHHHHHHHHHHHTTSEEEEEEETTEEEEEETTCCCCC
T ss_pred cchHHHHHHHHHHHHHCCCEEEEecCCCeEEEecCCccchh
Confidence 99999999999999999999999999999999999987664
No 4
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=97.32 E-value=0.00016 Score=49.55 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=42.7
Q ss_pred HHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 73 SYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 73 tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
+++.|+..+.....||.+.||++|+|+-+..|+-|.+|+++|+|..+
T Consensus 3 ~L~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 3 SLIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp CHHHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 35677777777889999999999999999999999999999999988
No 5
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=97.18 E-value=0.00036 Score=49.13 Aligned_cols=47 Identities=21% Similarity=0.369 Sum_probs=40.0
Q ss_pred HHHHHhhC-CCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 74 YDKLLKEV-PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 74 ydKl~KEV-pk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
.+.|..++ |+.++.|...||++|+|+-+..|.+|+.|+++|+|....
T Consensus 30 ~~~I~~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 30 IEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp HHHHTTSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHhhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 55666555 456777999999999999999999999999999997765
No 6
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=97.12 E-value=0.00024 Score=49.95 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=42.3
Q ss_pred HHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 74 YDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 74 ydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
+++|+..+.....||++.||++|+|+-+..|+-|.+|+++|+|..+.
T Consensus 4 L~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 4 LMEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp THHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 45677777777899999999999999999999999999999999984
No 7
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=97.05 E-value=0.00042 Score=47.33 Aligned_cols=45 Identities=13% Similarity=0.071 Sum_probs=38.4
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEe
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYT 129 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYt 129 (139)
--+|...||+.|+|+-+-+|+-|..|+++|+|..+-..++...+.
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~ggr~~~~~~ 67 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVNAGKGVPGLW 67 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESCSSSSCCEE
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCCCCCcHHHH
Confidence 458999999999999999999999999999999987555544443
No 8
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=96.65 E-value=0.0056 Score=40.17 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=36.1
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeEEe-ecCceEEEec
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQVV-KHHAQVIYTR 130 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs-kh~~q~IYtr 130 (139)
+|...||+.++|+-+-+++.|+.|++.|+|.... +..+...|.-
T Consensus 15 ~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l 59 (81)
T 2htj_A 15 GKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFL 59 (81)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEE
Confidence 8999999999999999999999999999998653 3334444443
No 9
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=96.56 E-value=0.0043 Score=44.32 Aligned_cols=50 Identities=22% Similarity=0.187 Sum_probs=41.2
Q ss_pred HHHHHHHHhhC------CCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 71 KASYDKLLKEV------PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 71 k~tydKl~KEV------pk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
...|+.|...| |..++-|-..||++|+|+-+..|+||+.|++.|+|....
T Consensus 16 ~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 71 (125)
T 3neu_A 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKR 71 (125)
T ss_dssp HHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEec
Confidence 44566666655 456777899999999999999999999999999986643
No 10
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=96.49 E-value=0.0059 Score=40.97 Aligned_cols=44 Identities=5% Similarity=0.053 Sum_probs=36.2
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEe
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYT 129 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYt 129 (139)
.-+|++.||++++|.-|-.-++|..|+++|+| ....++|...|.
T Consensus 29 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv-~~~~d~R~~~v~ 72 (95)
T 2qvo_A 29 NDVYIQYIASKVNSPHSYVWLIIKKFEEAKMV-ECELEGRTKIIR 72 (95)
T ss_dssp CCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSE-EEEEETTEEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCc-cCCCCCCeEEEE
Confidence 34899999999999999999999999999999 444555554443
No 11
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=96.46 E-value=0.011 Score=38.54 Aligned_cols=50 Identities=20% Similarity=0.255 Sum_probs=41.0
Q ss_pred eechHHHHhhhc----cchHHHHHHHHHHHHcCCeeEEeecCceEEEeccCCCCC
Q psy1871 86 LITPSVVSERLK----VRGSLARKALEELLQKGLIKQVVKHHAQVIYTRTTKGDD 136 (139)
Q Consensus 86 lITPsvlseRlk----I~~SLARkaLreL~~kGlIk~Vskh~~q~IYtra~k~~~ 136 (139)
-+|...|+++++ +.-|-....|+.|+++|+|..... ++..+|......++
T Consensus 23 ~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~~-gr~~~y~~~~~~~~ 76 (82)
T 1p6r_A 23 SINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKE-GRVFVYTPNIDESD 76 (82)
T ss_dssp SEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEESCSSST
T ss_pred CCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEec-CCEEEEEeecCHHH
Confidence 489999999998 578899999999999999998754 55778876655443
No 12
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=96.36 E-value=0.006 Score=42.46 Aligned_cols=44 Identities=25% Similarity=0.176 Sum_probs=37.7
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe--ecCceEEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV--KHHAQVIYT 129 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs--kh~~q~IYt 129 (139)
=||+..|++++++.-+..-++|+.|+++|+|+.|. .+.+..+|.
T Consensus 36 gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~~~~~~~~rKvy~ 81 (91)
T 2dk5_A 36 GIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYM 81 (91)
T ss_dssp CEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCSSCCEEE
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCcEEEE
Confidence 48999999999999999999999999999999773 334555665
No 13
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=96.32 E-value=0.0056 Score=42.12 Aligned_cols=59 Identities=8% Similarity=0.027 Sum_probs=46.1
Q ss_pred HHHHHHHHhhCCCCeeechHHHHhhhccchH-HHHHHHHHHHHcCCeeEEeecCceEEEecc
Q psy1871 71 KASYDKLLKEVPAYKLITPSVVSERLKVRGS-LARKALEELLQKGLIKQVVKHHAQVIYTRT 131 (139)
Q Consensus 71 k~tydKl~KEVpk~KlITPsvlseRlkI~~S-LARkaLreL~~kGlIk~Vskh~~q~IYtra 131 (139)
.++-++|+.-+.+.-=.|..+||+.|+|+.+ -+|+.|..|+++|+|.....++ ++|.-.
T Consensus 10 ~~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~~~gR--P~w~LT 69 (79)
T 1xmk_A 10 AEIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTTP--PIWHLT 69 (79)
T ss_dssp HHHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSSS--CEEEEC
T ss_pred hhHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEecCCCC--CCeEeC
Confidence 4566666655555555899999999999999 9999999999999998654444 377644
No 14
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=96.25 E-value=0.0068 Score=42.49 Aligned_cols=49 Identities=16% Similarity=0.250 Sum_probs=39.1
Q ss_pred HHHHHHHHhhC------CCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 71 KASYDKLLKEV------PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 71 k~tydKl~KEV------pk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
...|+.|...| |..++-|-..||++|+|+-+..|.+|+.|+++|+|..+
T Consensus 12 ~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 12 QQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 34555555554 34566699999999999999999999999999998654
No 15
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.22 E-value=0.017 Score=37.69 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=44.4
Q ss_pred HHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEecc
Q psy1871 73 SYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRT 131 (139)
Q Consensus 73 tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtra 131 (139)
+--+|+..+-...-+|+..||++++|+-|...+.|+.|++.|+|..... ++..+|.-.
T Consensus 25 ~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~-~r~~~y~l~ 82 (99)
T 3cuo_A 25 KRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRD-AQRILYSIK 82 (99)
T ss_dssp HHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEEC-SSCEEEEEC
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec-CCEEEEEEC
Confidence 3344555554444689999999999999999999999999999988753 445556543
No 16
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=96.19 E-value=0.011 Score=38.69 Aligned_cols=36 Identities=22% Similarity=0.392 Sum_probs=33.4
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
.-+|+..||++++|+-|-..++|+.|++.|+|....
T Consensus 35 ~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 35 KPITSEELADIFKLSKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeec
Confidence 348999999999999999999999999999998864
No 17
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=96.13 E-value=0.0081 Score=43.08 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=34.6
Q ss_pred CCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 82 PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 82 pk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
|..+|-|-..||++|+|+-+-.|.||+.|+.+|+|...
T Consensus 34 pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~ 71 (134)
T 4ham_A 34 EGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITV 71 (134)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEE
Confidence 66788899999999999999999999999999998653
No 18
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=96.10 E-value=0.013 Score=38.27 Aligned_cols=35 Identities=20% Similarity=0.475 Sum_probs=32.9
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeEEee
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQVVK 121 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vsk 121 (139)
+|+..||+.++|+-+-..+.|+.|+++|+|.....
T Consensus 35 ~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~ 69 (109)
T 1sfx_A 35 MRVSEIARELDLSARFVRDRLKVLLKRGFVRREIV 69 (109)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEee
Confidence 89999999999999999999999999999988643
No 19
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=96.09 E-value=0.0049 Score=42.60 Aligned_cols=44 Identities=23% Similarity=0.390 Sum_probs=36.6
Q ss_pred HHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 76 KLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 76 Kl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
.++..+.... +|++.||++++++-|-..++|+.|+++|+|....
T Consensus 42 ~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 42 HILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEecc
Confidence 3444555556 9999999999999999999999999999998764
No 20
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=96.07 E-value=0.011 Score=38.46 Aligned_cols=44 Identities=9% Similarity=0.232 Sum_probs=38.5
Q ss_pred eeechHHHHhhh-----ccchHHHHHHHHHHHHcCCeeEEeecCceEEE
Q psy1871 85 KLITPSVVSERL-----KVRGSLARKALEELLQKGLIKQVVKHHAQVIY 128 (139)
Q Consensus 85 KlITPsvlseRl-----kI~~SLARkaLreL~~kGlIk~Vskh~~q~IY 128 (139)
.-+|...|++++ +|.-+-..+.|+.|++.|+|..+....+...|
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y 80 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVF 80 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEe
Confidence 368999999999 99999999999999999999998765555556
No 21
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=95.93 E-value=0.0053 Score=42.04 Aligned_cols=50 Identities=20% Similarity=0.233 Sum_probs=39.6
Q ss_pred HHHHHHHHhhCCCC---eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 71 KASYDKLLKEVPAY---KLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 71 k~tydKl~KEVpk~---KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
.++..+|+..+-.. +-+|...||++|+|.-+-.++.|..|+++|+|..+.
T Consensus 9 ~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g 61 (81)
T 1qbj_A 9 QDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA 61 (81)
T ss_dssp HHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEES
T ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC
Confidence 34444454433333 378999999999999999999999999999998875
No 22
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=95.93 E-value=0.016 Score=45.61 Aligned_cols=44 Identities=23% Similarity=0.362 Sum_probs=36.6
Q ss_pred CCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEE
Q psy1871 82 PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVI 127 (139)
Q Consensus 82 pk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~I 127 (139)
|..++=|-..||++|+|+-...|+||++|+++|+|.. ++++..|
T Consensus 32 ~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~--~g~Gt~V 75 (248)
T 3f8m_A 32 IGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER--RGRTTVV 75 (248)
T ss_dssp TTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE--ETTEEEE
T ss_pred CCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe--CCCEEEE
Confidence 4456669999999999999999999999999999977 4444433
No 23
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=95.77 E-value=0.021 Score=39.25 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=34.0
Q ss_pred CeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 84 YKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 84 ~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
..-+|++.||++++++-|-..++|+.|+++|+|....
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 84 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVR 84 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeec
Confidence 4458999999999999999999999999999998874
No 24
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=95.73 E-value=0.024 Score=38.69 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=39.0
Q ss_pred eechHHHHhhhc----cchHHHHHHHHHHHHcCCeeEEeecCceEEEeccCC
Q psy1871 86 LITPSVVSERLK----VRGSLARKALEELLQKGLIKQVVKHHAQVIYTRTTK 133 (139)
Q Consensus 86 lITPsvlseRlk----I~~SLARkaLreL~~kGlIk~Vskh~~q~IYtra~k 133 (139)
-+|++.|+++++ |+-|-..++|+.|+++|+|..... .+..+|..-|.
T Consensus 24 ~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~-~rr~~~~~lT~ 74 (123)
T 1okr_A 24 YASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKD-NKIFQYYSLVE 74 (123)
T ss_dssp SEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEE-TTEEEEEESSC
T ss_pred CcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEec-CCeEEEEEecC
Confidence 489999999999 779999999999999999998765 55566665543
No 25
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=95.72 E-value=0.027 Score=37.65 Aligned_cols=44 Identities=23% Similarity=0.244 Sum_probs=39.4
Q ss_pred HHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 77 LLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 77 l~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
++.+-+.-.-+|...||++|+|.-+-.++.|..|+++|+|..+.
T Consensus 22 ~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g 65 (77)
T 1qgp_A 22 FLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC
Confidence 46677766679999999999999999999999999999998875
No 26
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=95.70 E-value=0.0059 Score=41.59 Aligned_cols=49 Identities=14% Similarity=0.164 Sum_probs=39.3
Q ss_pred HHHHHHHHhhCCC------CeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 71 KASYDKLLKEVPA------YKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 71 k~tydKl~KEVpk------~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
+.+++.|...|-. .++-|...||++|+|+-+..|++|+.|++.|+|..+
T Consensus 14 ~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 14 ADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp HHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEE
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 4566666665544 344499999999999999999999999999999653
No 27
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=95.67 E-value=0.017 Score=41.46 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=39.0
Q ss_pred HHHHHHHHhhC------CCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 71 KASYDKLLKEV------PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 71 k~tydKl~KEV------pk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
...|+.|...| |..++-|-..||++|+|+-+..|.||+.|+..|+|...
T Consensus 14 ~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~ 68 (126)
T 3by6_A 14 LQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTI 68 (126)
T ss_dssp HHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 34555555544 33455599999999999999999999999999998654
No 28
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=95.63 E-value=0.015 Score=40.50 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=39.5
Q ss_pred HHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 72 ASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 72 ~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
++-.+|+.-+...- +|...||++|+|+-+-.|+-|..|++.|+|....
T Consensus 17 ~~~~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~ 64 (82)
T 1oyi_A 17 EIVCEAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSD 64 (82)
T ss_dssp HHHHHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECS
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCC
Confidence 55666654444333 9999999999999999999999999999998764
No 29
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=95.62 E-value=0.023 Score=38.29 Aligned_cols=43 Identities=26% Similarity=0.319 Sum_probs=36.8
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEec
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTR 130 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtr 130 (139)
+|++.|+++++|+-+...+.|+.|++.|+|..... ++...|.-
T Consensus 35 ~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~-gr~~~y~l 77 (114)
T 2oqg_A 35 QSASSLATRLPVSRQAIAKHLNALQACGLVESVKV-GREIRYRA 77 (114)
T ss_dssp BCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec-CCEEEEEe
Confidence 79999999999999999999999999999987654 44555543
No 30
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=95.62 E-value=0.028 Score=38.27 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=36.5
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEee--cCceEEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVVK--HHAQVIYT 129 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vsk--h~~q~IYt 129 (139)
-+|++.||++++++-+-..++|+.|+++|+|..... ++|...|.
T Consensus 45 ~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~ 90 (142)
T 3bdd_A 45 PLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVW 90 (142)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEE
Confidence 389999999999999999999999999999988643 34444443
No 31
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=95.60 E-value=0.044 Score=36.41 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=44.5
Q ss_pred HHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEec
Q psy1871 72 ASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTR 130 (139)
Q Consensus 72 ~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtr 130 (139)
++--+|+..+-. .-+|.+.|++.++|+-|...+-|+.|++.|+|.... ..+...|.-
T Consensus 23 ~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~-~g~~~~y~l 79 (98)
T 3jth_A 23 ERRLQILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRK-EAQTVYYTL 79 (98)
T ss_dssp HHHHHHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-CTTCCEEEE
T ss_pred HHHHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE-eCCEEEEEE
Confidence 344456666655 568999999999999999999999999999998754 445556654
No 32
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=95.60 E-value=0.025 Score=39.05 Aligned_cols=44 Identities=11% Similarity=0.146 Sum_probs=37.2
Q ss_pred HHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 74 YDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 74 ydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
+-.|+.-+... ++++.||+.++++-+.+++.|+.|+++|+|...
T Consensus 10 i~~IL~~i~~~--~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~ 53 (95)
T 1r7j_A 10 IQAILEACKSG--SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE 53 (95)
T ss_dssp HHHHHHHHTTC--BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcC--CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE
Confidence 33455555543 999999999999999999999999999999876
No 33
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=95.59 E-value=0.037 Score=36.06 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=36.8
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe--ecCceEEEe
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV--KHHAQVIYT 129 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs--kh~~q~IYt 129 (139)
.-+|++.||++++|+-|-.-+.|+.|++.|+|.... ..++...|.
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~ 75 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVE 75 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEE
Confidence 358999999999999999999999999999998643 244444454
No 34
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=95.53 E-value=0.026 Score=43.76 Aligned_cols=49 Identities=18% Similarity=0.307 Sum_probs=41.3
Q ss_pred HHHHHHHHhhC------CCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 71 KASYDKLLKEV------PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 71 k~tydKl~KEV------pk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
...|+.|...| |..+| +-..||++|+|+-+--|.||+.|+..|+|...-
T Consensus 31 ~~v~~~l~~~I~~g~l~pG~~L-~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~ 85 (239)
T 2hs5_A 31 TRVAGILRDAIIDGTFRPGARL-SEPDICAALDVSRNTVREAFQILIEDRLVAHEL 85 (239)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEE-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHHcCCCCCcCEe-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 45666666554 66788 999999999999999999999999999997653
No 35
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=95.52 E-value=0.032 Score=37.04 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=35.3
Q ss_pred eeechHHH----HhhhccchHHHHHHHHHHHHcCCeeEEeecCce
Q psy1871 85 KLITPSVV----SERLKVRGSLARKALEELLQKGLIKQVVKHHAQ 125 (139)
Q Consensus 85 KlITPsvl----seRlkI~~SLARkaLreL~~kGlIk~Vskh~~q 125 (139)
.-+|++.| |++++|+-+-.-++|+.|+++|+|......+..
T Consensus 21 ~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~ 65 (99)
T 1tbx_A 21 EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEK 65 (99)
T ss_dssp TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCce
Confidence 44799999 999999999999999999999999887654433
No 36
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=95.48 E-value=0.033 Score=38.01 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=32.8
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
-+|++.||++++++-+-..++|+.|+++|+|....
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~ 84 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKV 84 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeC
Confidence 47999999999999999999999999999998874
No 37
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=95.47 E-value=0.021 Score=38.01 Aligned_cols=42 Identities=12% Similarity=0.057 Sum_probs=35.1
Q ss_pred echHHHHhhhccchHH-HHHHHHHHHHcCCeeEEeecCceEEE
Q psy1871 87 ITPSVVSERLKVRGSL-ARKALEELLQKGLIKQVVKHHAQVIY 128 (139)
Q Consensus 87 ITPsvlseRlkI~~SL-ARkaLreL~~kGlIk~Vskh~~q~IY 128 (139)
+|++.||+.++|+-+- .-++|+.|+++|+|..-..++|...+
T Consensus 31 ~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~ 73 (95)
T 2pg4_A 31 PSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTL 73 (95)
T ss_dssp CCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEE
T ss_pred CCHHHHHHHHCCCchHHHHHHHHHHHHCCCeecCCCCCCeEEE
Confidence 7999999999999999 99999999999999943344454433
No 38
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=95.47 E-value=0.024 Score=39.03 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=32.9
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
-+|++.||++++++-+-..++|+.|+++|+|....
T Consensus 51 ~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~ 85 (142)
T 2bv6_A 51 PVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRER 85 (142)
T ss_dssp EEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEE
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeec
Confidence 48999999999999999999999999999998864
No 39
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=95.47 E-value=0.024 Score=38.58 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=31.6
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
+|...||+.|+|+-+-.+++|+.|++.|+|...
T Consensus 34 ~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 34 MTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp BCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 699999999999999999999999999999876
No 40
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=95.44 E-value=0.0075 Score=43.22 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=39.9
Q ss_pred CHHHHHHHHhhC------CCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 70 DKASYDKLLKEV------PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 70 Dk~tydKl~KEV------pk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
-...|+.|...| |..++-|-..||++|+|+-+..|.||+.|++.|+|...
T Consensus 13 ~~~i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 68 (126)
T 3ic7_A 13 YLQIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNK 68 (126)
T ss_dssp TTHHHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 345677777666 34566688899999999999999999999999998654
No 41
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=95.43 E-value=0.044 Score=38.02 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=40.0
Q ss_pred HHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe--ecCceEEE
Q psy1871 76 KLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV--KHHAQVIY 128 (139)
Q Consensus 76 Kl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs--kh~~q~IY 128 (139)
.++..+-...-+|++.||++++++-|-.-++|+.|+++|+|.... .++|..++
T Consensus 40 ~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~ 94 (140)
T 3hsr_A 40 IVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQI 94 (140)
T ss_dssp HHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEE
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCcceeee
Confidence 344555556679999999999999999999999999999999873 34444443
No 42
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=95.42 E-value=0.025 Score=42.90 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=40.1
Q ss_pred HHHHHHHHhhC------CCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 71 KASYDKLLKEV------PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 71 k~tydKl~KEV------pk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
...|+.|...| |+.++=|-..||++|+|+-+-.|.||+.|+.+|+|...
T Consensus 10 ~~v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~ 64 (239)
T 1hw1_A 10 GFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQ 64 (239)
T ss_dssp HHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEe
Confidence 34566666555 45666689999999999999999999999999998754
No 43
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=95.41 E-value=0.034 Score=39.28 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=32.2
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
+|...||+++++.-|-..+.|+.|+++|+|....
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeC
Confidence 8999999999999999999999999999998753
No 44
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.37 E-value=0.035 Score=37.81 Aligned_cols=35 Identities=9% Similarity=0.137 Sum_probs=32.9
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
-+|++.||++++|+-+-..++|+.|+++|+|....
T Consensus 50 ~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~ 84 (142)
T 2fbi_A 50 EMESYQLANQACILRPSMTGVLARLERDGIVRRWK 84 (142)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeec
Confidence 38999999999999999999999999999998874
No 45
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=95.34 E-value=0.033 Score=38.15 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=32.9
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
-+|++.||++++++-+-.-++|+.|+++|+|....
T Consensus 47 ~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~ 81 (139)
T 3eco_A 47 GLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYV 81 (139)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecC
Confidence 47999999999999999999999999999999873
No 46
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=95.33 E-value=0.018 Score=38.52 Aligned_cols=42 Identities=29% Similarity=0.251 Sum_probs=35.6
Q ss_pred HHhhCCCC-eeechHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 77 LLKEVPAY-KLITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 77 l~KEVpk~-KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
|+.+|.+. =+|-.+-++++|+|.=..--.+||.|++||||++
T Consensus 15 lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 15 LLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCeec
Confidence 33444433 5889999999999999999999999999999986
No 47
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=95.33 E-value=0.03 Score=38.83 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=33.0
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
-+|++.||+++++.-+-..++|+.|+++|+|....
T Consensus 54 ~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~ 88 (152)
T 3bj6_A 54 GATAPQLGAALQMKRQYISRILQEVQRAGLIERRT 88 (152)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecC
Confidence 38999999999999999999999999999999874
No 48
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=95.29 E-value=0.016 Score=41.35 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=37.1
Q ss_pred HHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 72 ASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 72 ~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
..++.|+.-+-...-+|++.||++|+|+-+-.+++|+.|+++|+|...
T Consensus 40 ~~~~~i~~~l~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~ 87 (155)
T 2h09_A 40 DYVELISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMI 87 (155)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEe
Confidence 344444444333344799999999999999999999999999997654
No 49
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=95.29 E-value=0.028 Score=39.21 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=32.8
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
-+|++.||++++|+-+-..++|+.|+++|+|....
T Consensus 61 ~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 61 ERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp SEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecC
Confidence 48999999999999999999999999999998864
No 50
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=95.28 E-value=0.035 Score=38.36 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=32.8
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
-+|++.||++++++-+-.-++|+.|+++|+|....
T Consensus 56 ~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~ 90 (150)
T 2rdp_A 56 DLTVGELSNKMYLACSTTTDLVDRMERNGLVARVR 90 (150)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecC
Confidence 48999999999999999999999999999998864
No 51
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=95.24 E-value=0.034 Score=37.93 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=36.5
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe--ecCceEEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV--KHHAQVIYT 129 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs--kh~~q~IYt 129 (139)
-+|++.||++++++-+-.-++|+.|+++|+|.... .++|...|.
T Consensus 48 ~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~ 93 (138)
T 1jgs_A 48 CITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVK 93 (138)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEE
T ss_pred CCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCceeEeE
Confidence 37999999999999999999999999999999864 344544443
No 52
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=95.24 E-value=0.04 Score=38.81 Aligned_cols=43 Identities=19% Similarity=0.175 Sum_probs=35.9
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe--ecCceEEE
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV--KHHAQVIY 128 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs--kh~~q~IY 128 (139)
-+|++.||++++|.-+-..++|+.|+++|+|.... .++|...|
T Consensus 66 ~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~ 110 (162)
T 3cjn_A 66 GLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRV 110 (162)
T ss_dssp SEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEE
T ss_pred CCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEE
Confidence 48999999999999999999999999999998863 24444443
No 53
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.22 E-value=0.027 Score=38.55 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=33.3
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
.-+|++.||++++++-|-..++|+.|+++|+|....
T Consensus 51 ~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 51 DSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp SCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecC
Confidence 347999999999999999999999999999998874
No 54
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=95.20 E-value=0.038 Score=38.00 Aligned_cols=44 Identities=14% Similarity=0.121 Sum_probs=37.1
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEec
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTR 130 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtr 130 (139)
-+|+..||++++|+-|...+.|+.|++.|+|.... .++...|.-
T Consensus 38 ~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~-~gr~~~y~l 81 (108)
T 2kko_A 38 ERAVEAIATATGMNLTTASANLQALKSGGLVEARR-EGTRQYYRI 81 (108)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEE-ETTEEEEEE
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE-eCCEEEEEE
Confidence 36999999999999999999999999999998765 344555653
No 55
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=95.18 E-value=0.024 Score=40.94 Aligned_cols=48 Identities=10% Similarity=0.172 Sum_probs=38.7
Q ss_pred HHHHHHHhhC------CCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 72 ASYDKLLKEV------PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 72 ~tydKl~KEV------pk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
..|+.|...| |..++-|-..||++|+|+-+..|.||+.|+..|+|...
T Consensus 8 ~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~ 61 (129)
T 2ek5_A 8 QIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKK 61 (129)
T ss_dssp HHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe
Confidence 4455555544 44566689999999999999999999999999998654
No 56
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=95.17 E-value=0.037 Score=37.95 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=32.9
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
-+|++.||++++++-+-..++|+.|+++|+|....
T Consensus 47 ~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~ 81 (145)
T 2a61_A 47 PKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTP 81 (145)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecC
Confidence 48999999999999999999999999999999874
No 57
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=95.16 E-value=0.053 Score=36.80 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=32.9
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
-+|++.||++++++-|-.-++|+.|+++|+|....
T Consensus 52 ~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~ 86 (140)
T 2nnn_A 52 PCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSA 86 (140)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 58999999999999999999999999999998864
No 58
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=95.15 E-value=0.04 Score=36.80 Aligned_cols=47 Identities=17% Similarity=0.075 Sum_probs=38.0
Q ss_pred HHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 72 ASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 72 ~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
.+-.+|+..+ . .-+|+..|+++++|+-+..++.|+.|++.|+|....
T Consensus 31 ~~r~~Il~~L-~-~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~ 77 (96)
T 1y0u_A 31 PVRRKILRML-D-KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG 77 (96)
T ss_dssp HHHHHHHHHH-H-TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHH-c-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC
Confidence 3344555555 2 337999999999999999999999999999998654
No 59
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=95.14 E-value=0.04 Score=37.56 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=32.4
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
+|++.||++++++-|-.-++|+.|+++|+|....
T Consensus 42 ~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~ 75 (152)
T 1ku9_A 42 LTISDIMEELKISKGNVSMSLKKLEELGFVRKVW 75 (152)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 8999999999999999999999999999998873
No 60
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=95.13 E-value=0.044 Score=37.78 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=33.3
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
.-+|++.||+++++.-|-.-++|+.|+++|+|....
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 85 (143)
T 3oop_A 50 EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREI 85 (143)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccC
Confidence 458999999999999999999999999999998763
No 61
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=95.11 E-value=0.026 Score=43.24 Aligned_cols=48 Identities=29% Similarity=0.265 Sum_probs=40.3
Q ss_pred HHHHHHHHhhC------CCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 71 KASYDKLLKEV------PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 71 k~tydKl~KEV------pk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
+..|+.|...| |..++-+-..||++|+|+-+-.|.||+.|+..|+|..
T Consensus 7 ~~v~~~L~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 7 ESVMDWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLREALRVLEALGTIST 60 (239)
T ss_dssp HHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC
T ss_pred HHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEe
Confidence 45666666655 5667778889999999999999999999999999875
No 62
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=95.11 E-value=0.054 Score=36.80 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=32.8
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
-+|++.||++++++-+-..++|+.|+++|+|....
T Consensus 43 ~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~ 77 (138)
T 3bpv_A 43 GIKQDELATFFHVDKGTIARTLRRLEESGFIEREQ 77 (138)
T ss_dssp TCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeec
Confidence 47999999999999999999999999999999864
No 63
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.09 E-value=0.034 Score=38.31 Aligned_cols=35 Identities=31% Similarity=0.347 Sum_probs=32.8
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
-+|++.||++++|+-+-..++|+.|+++|+|....
T Consensus 50 ~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~ 84 (147)
T 2hr3_A 50 DVTPSELAAAERMRSSNLAALLRELERGGLIVRHA 84 (147)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCC
Confidence 48999999999999999999999999999998863
No 64
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=95.04 E-value=0.018 Score=41.27 Aligned_cols=37 Identities=30% Similarity=0.419 Sum_probs=33.4
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEee
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVK 121 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vsk 121 (139)
..+||+.||++++++.+-..++|+.|+++|+|.....
T Consensus 50 ~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 50 LFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp SSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 4489999999999999999999999999999988643
No 65
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=95.04 E-value=0.037 Score=44.25 Aligned_cols=38 Identities=24% Similarity=0.373 Sum_probs=33.8
Q ss_pred CCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 82 PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 82 pk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
|..++=|-..||++|+|+-...|+||+.|+++|+|...
T Consensus 49 ~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 86 (272)
T 3eet_A 49 PHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGR 86 (272)
T ss_dssp TTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 34577799999999999999999999999999998654
No 66
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=95.04 E-value=0.025 Score=39.01 Aligned_cols=61 Identities=15% Similarity=0.289 Sum_probs=56.5
Q ss_pred HHHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEecc
Q psy1871 71 KASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRT 131 (139)
Q Consensus 71 k~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtra 131 (139)
+.++..+...|...|++.-..||..|+++-..+..-|++|++.|.|.=|.-.|.-.||+-.
T Consensus 6 ~~ll~~Fi~yIk~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~ 66 (72)
T 1wi9_A 6 SGFLTEFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITP 66 (72)
T ss_dssp CCHHHHHHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCC
T ss_pred HHHHHHHHHHHHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecH
Confidence 4677888889999999999999999999999999999999999999999989999999843
No 67
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=95.01 E-value=0.038 Score=43.24 Aligned_cols=38 Identities=24% Similarity=0.423 Sum_probs=33.6
Q ss_pred CCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 82 PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 82 pk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
|+.++=|-..||++|+|+-+..|+||+.|+++|+|...
T Consensus 30 ~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 67 (243)
T 2wv0_A 30 PDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRL 67 (243)
T ss_dssp TTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe
Confidence 45566689999999999999999999999999998643
No 68
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=95.00 E-value=0.053 Score=37.64 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=33.4
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
.-+|++.||+.++|+-+-..++|+.|+++|+|....
T Consensus 50 ~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 85 (155)
T 1s3j_A 50 GSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTH 85 (155)
T ss_dssp SEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecC
Confidence 358999999999999999999999999999998874
No 69
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=94.97 E-value=0.039 Score=39.20 Aligned_cols=43 Identities=23% Similarity=0.399 Sum_probs=36.4
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe--ecCceEEE
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV--KHHAQVIY 128 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs--kh~~q~IY 128 (139)
=+|++.||++++|.-+-.-++|+.|+++|+|.... .++|..++
T Consensus 60 ~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l 104 (162)
T 3k0l_A 60 NLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILV 104 (162)
T ss_dssp TCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEe
Confidence 38999999999999999999999999999999874 34444433
No 70
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=94.94 E-value=0.044 Score=37.62 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=32.9
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
-+|++.||++++++-|-.-++|+.|+++|+|....
T Consensus 43 ~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~ 77 (144)
T 1lj9_A 43 GIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQE 77 (144)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeec
Confidence 48999999999999999999999999999999864
No 71
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=94.92 E-value=0.055 Score=37.97 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=32.9
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
-+|++.||++++|+-+-.-++|+.|+++|+|....
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~ 92 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREM 92 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 48999999999999999999999999999998864
No 72
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=94.89 E-value=0.054 Score=38.22 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=32.8
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
=+|++.||+++++.-+-.-++|+.|+++|+|....
T Consensus 64 ~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 98 (159)
T 3s2w_A 64 GINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQR 98 (159)
T ss_dssp SEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 48999999999999999999999999999998863
No 73
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=94.89 E-value=0.041 Score=40.44 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=34.0
Q ss_pred CeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 84 YKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 84 ~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
...+||..||++++++.+-.-++|+.|+++|+|..-
T Consensus 49 ~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 49 SYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp CCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 477899999999999999999999999999999984
No 74
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=94.89 E-value=0.053 Score=37.98 Aligned_cols=58 Identities=7% Similarity=0.046 Sum_probs=44.9
Q ss_pred eCHHHHHHHHhhCCCCeeechHHHHhhhcc----chHHHHHHHHHHHHcCCeeEEeecCceEEEecc
Q psy1871 69 FDKASYDKLLKEVPAYKLITPSVVSERLKV----RGSLARKALEELLQKGLIKQVVKHHAQVIYTRT 131 (139)
Q Consensus 69 ~Dk~tydKl~KEVpk~KlITPsvlseRlkI----~~SLARkaLreL~~kGlIk~Vskh~~q~IYtra 131 (139)
..-..++-|..+- =+|...|++++.+ .-+-..++|+.|+++|+|.... .+|..+|...
T Consensus 36 ~e~~VL~~L~~~~----~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~-~gR~~~Y~p~ 97 (99)
T 2k4b_A 36 AELIVMRVIWSLG----EARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK-EGRKFVYRPL 97 (99)
T ss_dssp SCSHHHHHHHHHS----CEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE-ETTEEEEECC
T ss_pred HHHHHHHHHHhCC----CCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe-CCCEEEEEEe
Confidence 3445677776533 3799999999985 4678889999999999999875 4667788754
No 75
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=94.87 E-value=0.045 Score=39.09 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=37.5
Q ss_pred CHHHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 70 DKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 70 Dk~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
|...++-|..+ .-+|...||++++++-+-.++.|+.|++.|+|..+
T Consensus 7 d~~il~~L~~~----~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 7 DLNIIEELKKD----SRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp HHHHHHHHHHC----SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc----CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 34455555444 33899999999999999999999999999999864
No 76
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=94.85 E-value=0.034 Score=42.04 Aligned_cols=50 Identities=30% Similarity=0.357 Sum_probs=42.1
Q ss_pred eCHHHHHHHHhhC------CCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 69 FDKASYDKLLKEV------PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 69 ~Dk~tydKl~KEV------pk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
+-...|+.|...| |..++ +-..||++|+|+-+--|.||+.|+..|+|...
T Consensus 13 l~~~v~~~l~~~I~~g~l~pG~~L-~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~ 68 (218)
T 3sxy_A 13 VRTKVYNLLKEMILNHELKLGEKL-NVRELSEKLGISFTPVRDALLQLATEGLVKVV 68 (218)
T ss_dssp -CHHHHHHHHHHHHTTSSCTTCEE-CHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCCEe-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 4456777777765 55677 99999999999999999999999999999664
No 77
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=94.81 E-value=0.034 Score=40.22 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=33.2
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeEEe--ecCceEEE
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQVV--KHHAQVIY 128 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs--kh~~q~IY 128 (139)
+|++.||++++|.-+-.-++|+.|+++|+|.... .++|..++
T Consensus 69 ~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l 112 (166)
T 3deu_A 69 QSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRI 112 (166)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEE
T ss_pred CCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEE
Confidence 8999999999999999999999999999998863 24444433
No 78
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=94.79 E-value=0.042 Score=38.27 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=31.2
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
+|++.||+++++.-|-.-++|+.|+++|+|..
T Consensus 56 ~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 56 ISVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 89999999999999999999999999999987
No 79
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=94.76 E-value=0.053 Score=37.75 Aligned_cols=42 Identities=10% Similarity=0.287 Sum_probs=35.9
Q ss_pred echHHHHhhh-ccchHHHHHHHHHHHHcCCeeEEeecCceEEEec
Q psy1871 87 ITPSVVSERL-KVRGSLARKALEELLQKGLIKQVVKHHAQVIYTR 130 (139)
Q Consensus 87 ITPsvlseRl-kI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtr 130 (139)
+|++.|++.+ +|+-+..-+.|+.|++.|+|..... +...|.=
T Consensus 43 ~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~--r~~~y~L 85 (111)
T 3df8_A 43 QNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG--QITTYAL 85 (111)
T ss_dssp BCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES--SSEEEEE
T ss_pred CCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec--CcEEEEE
Confidence 6699999999 9999999999999999999987654 5555653
No 80
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=94.74 E-value=0.042 Score=38.54 Aligned_cols=36 Identities=11% Similarity=0.184 Sum_probs=32.4
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
..+|...||++++|+-+..+++|+.|.+.|+|..+.
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~ 60 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIR 60 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecC
Confidence 567999999999999999999999999999986553
No 81
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=94.72 E-value=0.037 Score=43.05 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=39.3
Q ss_pred HHHHHHhhC------CCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 73 SYDKLLKEV------PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 73 tydKl~KEV------pk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
.|+.|...| |+.++ +...||++|+|+-+-.|.+|+.|+..|+|..+.
T Consensus 31 v~~~L~~~I~~g~l~pG~~L-~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~ 83 (237)
T 3c7j_A 31 IEEKLRNAIIDGSLPSGTAL-RQQELATLFGVSRMPVREALRQLEAQSLLRVET 83 (237)
T ss_dssp HHHHHHHHHHTSSSCTTCBC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHhCCCCCcCee-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 566666554 44566 999999999999999999999999999987653
No 82
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=94.71 E-value=0.034 Score=38.29 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=32.8
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
-+|++.||++++|+-+-..++|+.|+++|+|....
T Consensus 54 ~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~ 88 (147)
T 1z91_A 54 TLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKR 88 (147)
T ss_dssp EEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCB
T ss_pred CCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEecc
Confidence 68999999999999999999999999999998763
No 83
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=94.69 E-value=0.066 Score=36.92 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=36.4
Q ss_pred echHHHHhhh-ccchHHHHHHHHHHHHcCCeeEEee--cCceEEEe
Q psy1871 87 ITPSVVSERL-KVRGSLARKALEELLQKGLIKQVVK--HHAQVIYT 129 (139)
Q Consensus 87 ITPsvlseRl-kI~~SLARkaLreL~~kGlIk~Vsk--h~~q~IYt 129 (139)
+|++.|++++ +|+-+..-+.|+.|++.|+|..... +++...|.
T Consensus 36 ~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~ 81 (112)
T 1z7u_A 36 KRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYT 81 (112)
T ss_dssp BCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEE
T ss_pred CCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEE
Confidence 6999999999 9999999999999999999988643 34555554
No 84
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=94.69 E-value=0.073 Score=36.18 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=36.7
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEec
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTR 130 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtr 130 (139)
+|+..||+.++|+-|...+.|+.|++.|+|..... ++...|.-
T Consensus 40 ~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~-gr~~~y~l 82 (106)
T 1r1u_A 40 ASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQ-GQSMIYSL 82 (106)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe-CCEEEEEE
Confidence 69999999999999999999999999999987653 45555653
No 85
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=94.67 E-value=0.072 Score=36.46 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=37.9
Q ss_pred eechHHHHhhh-ccchHHHHHHHHHHHHcCCeeEEee--cCceEEEeccC
Q psy1871 86 LITPSVVSERL-KVRGSLARKALEELLQKGLIKQVVK--HHAQVIYTRTT 132 (139)
Q Consensus 86 lITPsvlseRl-kI~~SLARkaLreL~~kGlIk~Vsk--h~~q~IYtra~ 132 (139)
-+|++.|++++ +|+-+..-+.|+.|++.|+|..... .++...|.=..
T Consensus 27 ~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~ 76 (107)
T 2hzt_A 27 KKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSE 76 (107)
T ss_dssp CBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECT
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECc
Confidence 36999999999 9999999999999999999998642 24555555433
No 86
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=94.65 E-value=0.09 Score=35.87 Aligned_cols=43 Identities=16% Similarity=0.317 Sum_probs=36.3
Q ss_pred echHHHHhhhc----cchHHHHHHHHHHHHcCCeeEEeecCceEEEec
Q psy1871 87 ITPSVVSERLK----VRGSLARKALEELLQKGLIKQVVKHHAQVIYTR 130 (139)
Q Consensus 87 ITPsvlseRlk----I~~SLARkaLreL~~kGlIk~Vskh~~q~IYtr 130 (139)
+|+..|+++++ +.-|-...+|+-|+++|+|..... ++..+|..
T Consensus 25 ~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~~-~r~~~~~~ 71 (126)
T 1sd4_A 25 VSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKS-ENIYFYSS 71 (126)
T ss_dssp EEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEE
T ss_pred CCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEeC-CCeEEEEE
Confidence 79999999998 578999999999999999998764 44556653
No 87
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=94.62 E-value=0.057 Score=39.16 Aligned_cols=46 Identities=24% Similarity=0.297 Sum_probs=37.6
Q ss_pred CHHHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 70 DKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 70 Dk~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
|...++-|..+-+ +|...||++++++-+-.++.|+.|++.|+|..+
T Consensus 12 ~~~il~~L~~~~~----~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 57 (162)
T 2p5v_A 12 DIKILQVLQENGR----LTNVELSERVALSPSPCLRRLKQLEDAGIVRQY 57 (162)
T ss_dssp HHHHHHHHHHCTT----CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCC----CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeee
Confidence 3455555554433 699999999999999999999999999999864
No 88
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=94.62 E-value=0.063 Score=36.74 Aligned_cols=45 Identities=16% Similarity=0.188 Sum_probs=38.1
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEecc
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRT 131 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtra 131 (139)
-+|.+.||++++|+-|-..+.|+.|++.|+|.... ..+...|+-.
T Consensus 45 ~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~-~~r~~~~~~~ 89 (119)
T 2lkp_A 45 PLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDR-AGRSIVYSLY 89 (119)
T ss_dssp CCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEE-ETTEEEEEES
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe-cCCEEEEEEc
Confidence 47999999999999999999999999999997654 4556667644
No 89
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=94.61 E-value=0.08 Score=34.15 Aligned_cols=34 Identities=9% Similarity=0.067 Sum_probs=31.3
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
.-+|...||++|+|.-+...++|+.|++.|+|..
T Consensus 24 ~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 24 GPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp SCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 4589999999999999999999999999999744
No 90
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=94.58 E-value=0.045 Score=37.13 Aligned_cols=43 Identities=9% Similarity=0.140 Sum_probs=36.0
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe--ecCceEEE
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV--KHHAQVIY 128 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs--kh~~q~IY 128 (139)
-+|++.||++++++-|-.-++|+.|+++|+|.... .++|...|
T Consensus 47 ~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~ 91 (139)
T 3bja_A 47 KVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLV 91 (139)
T ss_dssp SEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEE
T ss_pred CcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCCceeEE
Confidence 48999999999999999999999999999998863 23444433
No 91
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=94.57 E-value=0.044 Score=38.07 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=32.8
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
.-+|.+.||++++|+-|-..++|+.|+++|+|....
T Consensus 30 ~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 30 EGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC
Confidence 458999999999999999999999999999987643
No 92
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=94.52 E-value=0.056 Score=38.84 Aligned_cols=49 Identities=16% Similarity=0.306 Sum_probs=40.8
Q ss_pred eeeCHHHHHHHHhhCCCCeeechHHHHhhh--ccchHHHHHHHHHHHHcCCeeEE
Q psy1871 67 VLFDKASYDKLLKEVPAYKLITPSVVSERL--KVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 67 Vl~Dk~tydKl~KEVpk~KlITPsvlseRl--kI~~SLARkaLreL~~kGlIk~V 119 (139)
...|..+++-|..+- -+||+.||+.+ +|+-+-.++-|+.|++.|+|...
T Consensus 12 d~~d~~IL~~L~~~g----~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~ 62 (111)
T 3b73_A 12 TIWDDRILEIIHEEG----NGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL 62 (111)
T ss_dssp CHHHHHHHHHHHHHS----CBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC
T ss_pred CHHHHHHHHHHHHcC----CCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec
Confidence 344666777666654 47999999999 99999999999999999999875
No 93
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=94.48 E-value=0.039 Score=38.17 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=32.3
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
+|++.||+.+++.-+-.-++|+.|+++|+|....
T Consensus 46 ~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 79 (145)
T 3g3z_A 46 RTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQE 79 (145)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecc
Confidence 8999999999999999999999999999998753
No 94
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=94.42 E-value=0.029 Score=39.34 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=33.2
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe--ecCceEEE
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV--KHHAQVIY 128 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs--kh~~q~IY 128 (139)
.-+|++.||++++++-+-.-++|+.|+++|+|.... .++|...+
T Consensus 54 ~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~ 99 (149)
T 4hbl_A 54 NPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLII 99 (149)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeee
Confidence 347999999999999999999999999999998763 33444333
No 95
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=94.40 E-value=0.069 Score=37.87 Aligned_cols=36 Identities=14% Similarity=0.240 Sum_probs=33.3
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
.=+|++.||++++|.-+-.-++|+.|+++|+|....
T Consensus 66 ~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~ 101 (161)
T 3e6m_A 66 GELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSI 101 (161)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 358999999999999999999999999999998763
No 96
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=94.37 E-value=0.049 Score=38.07 Aligned_cols=34 Identities=21% Similarity=0.151 Sum_probs=31.8
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
-+|++.||++++|+-|-..++|+.|+++|+|...
T Consensus 22 ~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~ 55 (142)
T 1on2_A 22 YARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYE 55 (142)
T ss_dssp SCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe
Confidence 3899999999999999999999999999999764
No 97
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=94.36 E-value=0.1 Score=37.47 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=32.7
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
-+|++.||++++|+-|-.-++|+.|+++|+|....
T Consensus 59 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 93 (168)
T 2nyx_A 59 PINLATLATLLGVQPSATGRMVDRLVGAELIDRLP 93 (168)
T ss_dssp SEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecc
Confidence 38999999999999999999999999999998863
No 98
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=94.32 E-value=0.081 Score=39.09 Aligned_cols=35 Identities=9% Similarity=0.170 Sum_probs=33.0
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
-+|++.||+++++.-|-.-++|+.|+++|+|....
T Consensus 57 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~ 91 (189)
T 3nqo_A 57 ETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIP 91 (189)
T ss_dssp GCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 57999999999999999999999999999999874
No 99
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=94.25 E-value=0.074 Score=37.97 Aligned_cols=46 Identities=17% Similarity=0.212 Sum_probs=37.2
Q ss_pred CHHHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 70 DKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 70 Dk~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
|...+.-|..+ .-+|.+.||++++++-+-.++.|+.|++.|+|..+
T Consensus 9 ~~~iL~~L~~~----~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 9 DRILVRELAAD----GRATLSELATRAGLSVSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HHHHHHHHHHC----TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc----CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 33455555443 23799999999999999999999999999999765
No 100
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=94.20 E-value=0.11 Score=40.45 Aligned_cols=37 Identities=38% Similarity=0.323 Sum_probs=33.0
Q ss_pred CCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 83 AYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 83 k~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
+.++=|-..||++|+|+-+..|+||+.|+++|+|...
T Consensus 26 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~ 62 (239)
T 3bwg_A 26 GDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQV 62 (239)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEe
Confidence 4556599999999999999999999999999999654
No 101
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=94.07 E-value=0.061 Score=37.56 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=36.0
Q ss_pred HHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 77 LLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 77 l~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
++..+-...-+|++.||++++|.-+-.-++|+.|+++|+|...
T Consensus 48 iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~ 90 (155)
T 3cdh_A 48 VLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRV 90 (155)
T ss_dssp HHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 3333434445899999999999999999999999999999875
No 102
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=94.05 E-value=0.086 Score=39.28 Aligned_cols=46 Identities=28% Similarity=0.344 Sum_probs=37.6
Q ss_pred CHHHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 70 DKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 70 Dk~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
|...++-|..+- -+|...||++++++-+-.++.|+.|++.|+|..+
T Consensus 19 d~~IL~~L~~~~----~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~ 64 (171)
T 2ia0_A 19 DRNILRLLKKDA----RLTISELSEQLKKPESTIHFRIKKLQERGVIERY 64 (171)
T ss_dssp HHHHHHHHHHCT----TCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC----CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 345555555442 3799999999999999999999999999999754
No 103
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=94.05 E-value=0.079 Score=37.76 Aligned_cols=46 Identities=15% Similarity=0.230 Sum_probs=37.4
Q ss_pred CHHHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 70 DKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 70 Dk~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
|...++-|..+ .-+|...||++++++-+-.++.|+.|++.|+|..+
T Consensus 11 d~~il~~L~~~----~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 56 (151)
T 2dbb_A 11 DMQLVKILSEN----SRLTYRELADILNTTRQRIARRIDKLKKLGIIRKF 56 (151)
T ss_dssp HHHHHHHHHHC----TTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHc----CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 34455545443 34799999999999999999999999999999864
No 104
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=93.94 E-value=0.067 Score=41.74 Aligned_cols=48 Identities=15% Similarity=0.258 Sum_probs=36.7
Q ss_pred HHHHHHHhhC------CCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 72 ASYDKLLKEV------PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 72 ~tydKl~KEV------pk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
..++.|...| |+.++=|-..||++|+|+-...|+||++|+++|+|...
T Consensus 13 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 66 (236)
T 3edp_A 13 VIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRK 66 (236)
T ss_dssp HHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3444554443 33556699999999999999999999999999998654
No 105
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=93.93 E-value=0.085 Score=36.97 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=35.8
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEecc
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRT 131 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtra 131 (139)
-+|.+.|++.++|+-|...+.|+.|++.|+|.... .++...|+-+
T Consensus 56 ~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~-~gr~~~y~l~ 100 (122)
T 1u2w_A 56 ELCVCDIANILGVTIANASHHLRTLYKQGVVNFRK-EGKLALYSLG 100 (122)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-----CCEEEES
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE-ECCEEEEEEC
Confidence 37999999999999999999999999999998753 3455566643
No 106
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=93.91 E-value=0.084 Score=37.77 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=37.4
Q ss_pred CHHHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 70 DKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 70 Dk~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
|...++-|..+ .-+|...||++++++-+-.++.|+.|++.|+|..+
T Consensus 10 d~~il~~L~~~----~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 55 (152)
T 2cg4_A 10 DRGILEALMGN----ARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGA 55 (152)
T ss_dssp HHHHHHHHHHC----TTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHc----CCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceE
Confidence 34455545444 34799999999999999999999999999999864
No 107
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=93.87 E-value=0.16 Score=34.57 Aligned_cols=45 Identities=22% Similarity=0.256 Sum_probs=36.5
Q ss_pred eechHHHHhhhc-cchHHHHHHHHHHHHcCCeeEEee--cCceEEEec
Q psy1871 86 LITPSVVSERLK-VRGSLARKALEELLQKGLIKQVVK--HHAQVIYTR 130 (139)
Q Consensus 86 lITPsvlseRlk-I~~SLARkaLreL~~kGlIk~Vsk--h~~q~IYtr 130 (139)
-+|++.|++++. |+-+..-+.|+.|++.|+|..... .++...|.=
T Consensus 38 ~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~L 85 (107)
T 2fsw_A 38 IIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSL 85 (107)
T ss_dssp CEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEE
T ss_pred CcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEE
Confidence 379999999995 999999999999999999987642 345555543
No 108
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=93.85 E-value=0.063 Score=37.10 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=32.2
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
.-+|++.||++++++-|-.-++|+.|+++|+|...
T Consensus 53 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 53 SDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 36899999999999999999999999999999876
No 109
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=93.84 E-value=0.15 Score=35.13 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=31.6
Q ss_pred chHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 88 TPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 88 TPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
|++.||+++++.-|-.-++|+.|+++|+|....
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~ 84 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIR 84 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHHCCCEEecc
Confidence 999999999999999999999999999998874
No 110
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=93.80 E-value=0.05 Score=45.44 Aligned_cols=55 Identities=11% Similarity=0.136 Sum_probs=42.9
Q ss_pred HHHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEec
Q psy1871 71 KASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTR 130 (139)
Q Consensus 71 k~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtr 130 (139)
...++.|.. ..++|...+++.++|+-+-|++.|++|++.|+|+.+... |..+|..
T Consensus 300 ~~ll~~l~~----~p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~~~~g-R~~~y~~ 354 (373)
T 2qc0_A 300 HELVQVIFE----QPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQSG-KEKLFVH 354 (373)
T ss_dssp HHHHHHHHH----CSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC--C-CSCEEEC
T ss_pred HHHHHHHHh----CCcccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEEecCC-CceEEeh
Confidence 344444443 458999999999999999999999999999999998654 4477763
No 111
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=93.78 E-value=0.15 Score=35.38 Aligned_cols=43 Identities=14% Similarity=0.023 Sum_probs=36.6
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEec
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTR 130 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtr 130 (139)
+|++.||+.++|+-+...+-|+.|++.|+|..... ++..+|.-
T Consensus 32 ~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~-gr~~~y~l 74 (118)
T 3f6o_A 32 ATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQ-GRVRTCAI 74 (118)
T ss_dssp EEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEE
T ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEec-CCEEEEEE
Confidence 59999999999999999999999999999987544 45555653
No 112
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=93.76 E-value=0.11 Score=37.06 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=30.0
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
-+|++.||++++|.-+-.-++|+.|+++|+|....
T Consensus 62 ~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~ 96 (168)
T 3u2r_A 62 GMATLQIADRLISRAPDITRLIDRLDDRGLVLRTR 96 (168)
T ss_dssp CEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEE
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecC
Confidence 58999999999999999999999999999999864
No 113
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=93.76 E-value=0.041 Score=38.43 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=33.1
Q ss_pred CCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 83 AYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 83 k~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
...-+|++.||+++++.-|-.-++|+.|+++|+|..
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 445589999999999999999999999999999986
No 114
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=93.76 E-value=0.048 Score=37.69 Aligned_cols=35 Identities=11% Similarity=0.178 Sum_probs=28.6
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
-+|++.||++++|+-|-.-++|+.|+++|+|....
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~ 85 (142)
T 3ech_A 51 GLNLQDLGRQMCRDKALITRKIRELEGRNLVRRER 85 (142)
T ss_dssp TCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC--
T ss_pred CcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeecc
Confidence 37999999999999999999999999999998763
No 115
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=93.73 E-value=0.14 Score=36.38 Aligned_cols=43 Identities=23% Similarity=0.215 Sum_probs=35.3
Q ss_pred eechHHHHhhhc----cchHHHHHHHHHHHHcCCeeEEeecCceEEEe
Q psy1871 86 LITPSVVSERLK----VRGSLARKALEELLQKGLIKQVVKHHAQVIYT 129 (139)
Q Consensus 86 lITPsvlseRlk----I~~SLARkaLreL~~kGlIk~Vskh~~q~IYt 129 (139)
-+|...|++++. |.-|-...+|+.|+++|+|..... ++..+|.
T Consensus 24 ~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~~-~r~~~~~ 70 (138)
T 2g9w_A 24 PQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRD-DRAHRYA 70 (138)
T ss_dssp CEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC----CCEEE
T ss_pred CCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEec-CCeEEEE
Confidence 489999999998 899999999999999999998764 4455664
No 116
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=93.71 E-value=0.13 Score=34.33 Aligned_cols=44 Identities=14% Similarity=0.260 Sum_probs=37.0
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEecc
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRT 131 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtra 131 (139)
.|+..|++.++|+-|...+.|+.|++.|+|.... ..+...|.-+
T Consensus 37 ~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~-~g~~~~y~l~ 80 (102)
T 3pqk_A 37 FSVGELEQQIGIGQPTLSQQLGVLRESGIVETRR-NIKQIFYRLT 80 (102)
T ss_dssp BCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEEC-SSSCCEEEEC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE-eCCEEEEEEC
Confidence 7999999999999999999999999999998654 3445566543
No 117
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=93.68 E-value=0.14 Score=36.23 Aligned_cols=54 Identities=17% Similarity=0.179 Sum_probs=41.3
Q ss_pred HHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEecc
Q psy1871 76 KLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRT 131 (139)
Q Consensus 76 Kl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtra 131 (139)
+|+..+-. .-.|.+.||++++|+-|...+.|+.|++.|+|.... .++...|+-+
T Consensus 50 ~IL~~L~~-~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~-~gr~~~y~l~ 103 (122)
T 1r1t_A 50 RLLSLLAR-SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRK-QGRHVYYQLQ 103 (122)
T ss_dssp HHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE-ETTEEEEEES
T ss_pred HHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE-eCCEEEEEEC
Confidence 34444432 337999999999999999999999999999998754 3455667644
No 118
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.48 E-value=0.086 Score=37.42 Aligned_cols=36 Identities=31% Similarity=0.168 Sum_probs=33.6
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
+=|+...|..++++.-....++|+.||.+|+|+.|.
T Consensus 52 ~GIw~kdL~~~tnL~~~~vtkiLK~LE~k~lIK~Vk 87 (95)
T 2yu3_A 52 KGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVK 87 (95)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEec
Confidence 457899999999999999999999999999999994
No 119
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=93.48 E-value=0.072 Score=38.17 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=29.4
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEee
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVK 121 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vsk 121 (139)
.-+|++.||++++|.-+-.-++|+.|+++|+|...+.
T Consensus 51 ~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr~~~~ 87 (148)
T 4fx0_A 51 IDLTMSELAARIGVERTTLTRNLEVMRRDGLVRVMAG 87 (148)
T ss_dssp ---CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC----
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeCC
Confidence 3489999999999999999999999999999966543
No 120
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=93.46 E-value=0.05 Score=37.88 Aligned_cols=35 Identities=17% Similarity=0.106 Sum_probs=32.6
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
.-+|++.||+++++.-|-.-++|+.|+++|+|...
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCB
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 45899999999999999999999999999999875
No 121
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=93.46 E-value=0.16 Score=38.83 Aligned_cols=43 Identities=30% Similarity=0.294 Sum_probs=36.4
Q ss_pred HHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 76 KLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 76 Kl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
+|+..+.+ .-+|...||++++++-+-.++-|+.|++.|+|...
T Consensus 24 ~IL~~L~~-~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 24 KILKLLRN-KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 44444443 34899999999999999999999999999999987
No 122
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=93.43 E-value=0.063 Score=40.55 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=29.1
Q ss_pred hHHHHhhhc--------------cchHHHHHHHHHHHHcCCeeEE
Q psy1871 89 PSVVSERLK--------------VRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 89 PsvlseRlk--------------I~~SLARkaLreL~~kGlIk~V 119 (139)
...|++.|+ ++.+..|.||+.|++.|+|...
T Consensus 70 ~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~ 114 (150)
T 2v7f_A 70 IERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKV 114 (150)
T ss_dssp HHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEe
Confidence 489999999 9999999999999999999765
No 123
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=93.39 E-value=0.13 Score=36.51 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=32.9
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
-+|++.||++++|.-|-.-++|..|+++|+|....
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~ 85 (147)
T 4b8x_A 51 ELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRP 85 (147)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEee
Confidence 47999999999999999999999999999999874
No 124
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=93.37 E-value=0.079 Score=37.14 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=31.9
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
.-+|++.||++++|.-+-.-++|+.|+++|+|...
T Consensus 62 ~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~ 96 (162)
T 2fa5_A 62 PGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRE 96 (162)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeee
Confidence 35899999999999999999999999999999875
No 125
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=93.37 E-value=0.079 Score=37.05 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=30.9
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
+|.+.||++++++-+..++.|+.|++.|+|..+
T Consensus 19 ~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 19 TPFTEIAKKLGISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEecc
Confidence 599999999999999999999999999999753
No 126
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=93.29 E-value=0.066 Score=37.28 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=31.2
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
+|++.||++++|.-+-.-++|+.|+++|+|...
T Consensus 55 ~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~ 87 (150)
T 3fm5_A 55 VNQRGVAATMGLDPSQIVGLVDELEERGLVVRT 87 (150)
T ss_dssp CCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-
T ss_pred cCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 899999999999999999999999999999875
No 127
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=93.24 E-value=0.1 Score=37.44 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=32.4
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
.+|++.||++++|.-|-.-++|..|+++|+|....
T Consensus 46 ~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~ 80 (151)
T 4aik_A 46 EQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHT 80 (151)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeec
Confidence 46899999999999999999999999999998763
No 128
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=93.21 E-value=0.11 Score=37.73 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=32.7
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEee
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVK 121 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vsk 121 (139)
..+|...||++++|+-+..+++|+.|.+.|+|.-+..
T Consensus 29 ~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG 65 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG 65 (149)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC
Confidence 4689999999999999999999999999999876554
No 129
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=93.12 E-value=0.096 Score=37.20 Aligned_cols=34 Identities=12% Similarity=0.239 Sum_probs=31.8
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
-+|...||++++++-|-.++.|+.|++.|+|..+
T Consensus 17 ~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 17 KYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 4899999999999999999999999999999863
No 130
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=93.09 E-value=0.13 Score=38.83 Aligned_cols=49 Identities=16% Similarity=0.337 Sum_probs=40.0
Q ss_pred HHHHHHHHhhC------CCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 71 KASYDKLLKEV------PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 71 k~tydKl~KEV------pk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
...|+.|...| |..+|- -..||++|+|+-+--|.||+.|+..|+|...-
T Consensus 19 ~~v~~~l~~~I~~g~l~pG~~L~-E~~La~~lgVSRtpVREAl~~L~~eGlv~~~~ 73 (222)
T 3ihu_A 19 DTVFFGIMSGLELGTFVPGQRLV-ETDLVAHFGVGRNSVREALQRLAAEGIVDLQR 73 (222)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEEC-HHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHHHHHHhCCCCCCCccC-HHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 45677776654 445665 99999999999999999999999999997653
No 131
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=93.06 E-value=0.2 Score=35.91 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=36.8
Q ss_pred eeechHHHHhhh-ccchHHHHHHHHHHHHcCCeeEEee--cCceEEEe
Q psy1871 85 KLITPSVVSERL-KVRGSLARKALEELLQKGLIKQVVK--HHAQVIYT 129 (139)
Q Consensus 85 KlITPsvlseRl-kI~~SLARkaLreL~~kGlIk~Vsk--h~~q~IYt 129 (139)
.-+|++.|++++ +|+-+..-+.|+.|++.|+|..... .++...|.
T Consensus 47 g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~ 94 (131)
T 1yyv_A 47 GTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYS 94 (131)
T ss_dssp CCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEE
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEE
Confidence 347999999999 7999999999999999999987642 24555554
No 132
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=93.05 E-value=0.057 Score=37.82 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=32.3
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
-+|++.||++++|.-+-.-++|+.|+++|+|...
T Consensus 62 ~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 62 GLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp CEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC
T ss_pred CCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 4899999999999999999999999999999875
No 133
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=92.99 E-value=0.24 Score=36.06 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=35.0
Q ss_pred CCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEee
Q psy1871 82 PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVK 121 (139)
Q Consensus 82 pk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vsk 121 (139)
+.-..+|...||++++|+-+..+++|+.|.+.|+|.-+..
T Consensus 24 ~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG 63 (143)
T 3t8r_A 24 EGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 63 (143)
T ss_dssp TTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSS
T ss_pred CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCC
Confidence 4445799999999999999999999999999999876543
No 134
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=92.92 E-value=0.25 Score=37.11 Aligned_cols=44 Identities=11% Similarity=0.171 Sum_probs=36.8
Q ss_pred CCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCce
Q psy1871 82 PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQ 125 (139)
Q Consensus 82 pk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q 125 (139)
+.-..+|...||++++|+-+..+++|..|.+.|+|.-+...+..
T Consensus 40 ~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GG 83 (159)
T 3lwf_A 40 IGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGG 83 (159)
T ss_dssp TTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCE
T ss_pred CCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCc
Confidence 33457899999999999999999999999999999876543333
No 135
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=92.85 E-value=0.49 Score=32.54 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=45.8
Q ss_pred CHHHHHHH---HhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeec
Q psy1871 70 DKASYDKL---LKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKH 122 (139)
Q Consensus 70 Dk~tydKl---~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh 122 (139)
|-+.|+.+ ..+.|--..+|...||-+|+++=+-+.++|=.|+++|.+..+..+
T Consensus 10 ~~~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~~~~ 65 (75)
T 1sfu_A 10 DAEIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSN 65 (75)
T ss_dssp SHHHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCS
T ss_pred hHHHHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecCCCC
Confidence 55778877 556677788999999999999999999999999999999887543
No 136
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=92.69 E-value=0.15 Score=40.49 Aligned_cols=47 Identities=11% Similarity=0.002 Sum_probs=37.9
Q ss_pred CeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEecc
Q psy1871 84 YKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRT 131 (139)
Q Consensus 84 ~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtra 131 (139)
...||++.++++|++...+|+..|.+++.+|++-.=.... ..-|.++
T Consensus 166 ~g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~D~~~e-g~~y~pn 212 (218)
T 3cuq_B 166 KGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRDDSVE-GLRFYPN 212 (218)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEESSS-CEEEEEC
T ss_pred CCCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEECCCC-ceEEehh
Confidence 4689999999999999999999999999999987654333 3335444
No 137
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=92.54 E-value=0.16 Score=35.31 Aligned_cols=44 Identities=23% Similarity=0.217 Sum_probs=36.6
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEecc
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRT 131 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtra 131 (139)
.|...|+++++|+-|...+.|+.|++.|+|.... .++...|.-+
T Consensus 35 ~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~-~gr~~~y~l~ 78 (118)
T 2jsc_A 35 CYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATY-EGRQVRYALA 78 (118)
T ss_dssp CSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEE-CSSSEEEEES
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEE-ECCEEEEEEC
Confidence 5899999999999999999999999999998754 3445556543
No 138
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=92.53 E-value=0.13 Score=41.46 Aligned_cols=35 Identities=11% Similarity=0.273 Sum_probs=32.4
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCee-EE
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIK-QV 119 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk-~V 119 (139)
.-+|...||++|+|+-+..|+-|.+|+++|+|+ .+
T Consensus 20 ~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~iri 55 (315)
T 2w48_A 20 QDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAI 55 (315)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEe
Confidence 348999999999999999999999999999997 55
No 139
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=92.44 E-value=0.28 Score=37.58 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=33.6
Q ss_pred CCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 83 AYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 83 k~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
...-+|...||++|+|+-+-..++|+.|+++|+|...
T Consensus 17 ~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~ 53 (214)
T 3hrs_A 17 RHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKD 53 (214)
T ss_dssp SCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEe
Confidence 3457899999999999999999999999999998765
No 140
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=92.32 E-value=0.064 Score=37.30 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=26.2
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
-+|++.||+++++.-+-.-++|+.|+++|+|...
T Consensus 57 ~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 90 (148)
T 3jw4_A 57 GIIQKDLAQFFGRRGASITSMLQGLEKKGYIERR 90 (148)
T ss_dssp CCCHHHHHHC------CHHHHHHHHHHTTSBCCC
T ss_pred CCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEee
Confidence 4799999999999999999999999999999876
No 141
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=92.32 E-value=0.086 Score=39.36 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=37.9
Q ss_pred chhhhhhhccceeeC---HHHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 56 KGKVRDKLNNQVLFD---KASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 56 KgKvkdKlnn~Vl~D---k~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
-|-+..-.+...-+| ...++-|..+ --+|...||++++++-+-.++-|+.|++.|+|..+
T Consensus 12 ~~~~~~~~~m~~~ld~~d~~IL~~L~~~----~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 12 SGLVPRGSHMRVPLDEIDKKIIKILQND----GKAPLREISKITGLAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp ------------CCCHHHHHHHHHHHHC----TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred ccccccccccccCCCHHHHHHHHHHHHc----CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEee
Confidence 344444444333344 3445544443 34899999999999999999999999999999763
No 142
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=92.27 E-value=0.28 Score=35.55 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=32.5
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
-+|.+.|+++++|+-+..-+.|+.|++.|+|....
T Consensus 37 ~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~ 71 (146)
T 2f2e_A 37 LTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVP 71 (146)
T ss_dssp CCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 36899999999999999999999999999999864
No 143
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=92.14 E-value=0.16 Score=38.51 Aligned_cols=34 Identities=15% Similarity=0.048 Sum_probs=32.5
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
+|++.||++++|.-+-.-++|+.|+++|+|....
T Consensus 63 ~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~ 96 (207)
T 2fxa_A 63 ASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSK 96 (207)
T ss_dssp EEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 8999999999999999999999999999998874
No 144
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=91.91 E-value=0.19 Score=36.75 Aligned_cols=43 Identities=7% Similarity=0.272 Sum_probs=34.8
Q ss_pred HHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 77 LLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 77 l~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
|+..+..---+|...||++++++-+-.++-|+.|++.|+|..+
T Consensus 8 il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 8 ILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeec
Confidence 3333333334599999999999999999999999999999853
No 145
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=91.83 E-value=0.34 Score=35.70 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=44.3
Q ss_pred HHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEecc
Q psy1871 72 ASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRT 131 (139)
Q Consensus 72 ~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtra 131 (139)
++--+|+..+-. .=.|+..|++.++|.-|...+-|+.|++.|+|.... ..+..+|.-+
T Consensus 58 p~R~~IL~~L~~-~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~-~Gr~~~y~lt 115 (151)
T 3f6v_A 58 PTRRRLVQLLTS-GEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRK-DGRFRYYRLD 115 (151)
T ss_dssp HHHHHHHHHGGG-CCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEE-ETTEEEEEEC
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe-cCCEEEEEEC
Confidence 444556555542 337999999999999999999999999999998765 4445666543
No 146
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=91.70 E-value=0.15 Score=43.07 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=38.0
Q ss_pred CeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEe
Q psy1871 84 YKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYT 129 (139)
Q Consensus 84 ~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYt 129 (139)
..++|...+++.++++-.-|++.|++|.+.|+|..+... |..+|.
T Consensus 309 ~p~~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~~~~~g-R~~~y~ 353 (373)
T 3eqx_A 309 QPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQSG-KEKLFV 353 (373)
T ss_dssp CSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC--C-CSCEEE
T ss_pred CCCccHHHHHHHhCcCHHHHHHHHHHHHHCCcEEEeCCC-CceEee
Confidence 458999999999999999999999999999999998654 445675
No 147
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=91.69 E-value=0.4 Score=33.76 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=42.3
Q ss_pred HHHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeec
Q psy1871 71 KASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKH 122 (139)
Q Consensus 71 k~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh 122 (139)
++..++|...+-. .-.++..|++++++.-+.++.+|+.|.+.|.|..+...
T Consensus 6 ~~l~~~i~~~~~~-~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~~~ 56 (121)
T 2pjp_A 6 QAIWQKAEPLFGD-EPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKD 56 (121)
T ss_dssp HHHHHHHGGGCSS-SCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETT
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 3456677776644 34588999999999999999999999999999999854
No 148
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=91.44 E-value=0.35 Score=35.32 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=39.1
Q ss_pred eechHHHHhhh-ccchHHHHHHHHHHHHcCCeeEEe--ecCceEEEeccCCC
Q psy1871 86 LITPSVVSERL-KVRGSLARKALEELLQKGLIKQVV--KHHAQVIYTRTTKG 134 (139)
Q Consensus 86 lITPsvlseRl-kI~~SLARkaLreL~~kGlIk~Vs--kh~~q~IYtra~k~ 134 (139)
-.+++.|++.+ +|+-+.--..|++|++.|+|.... ..++...|.=..++
T Consensus 39 ~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G 90 (131)
T 4a5n_A 39 KKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFG 90 (131)
T ss_dssp CBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTG
T ss_pred CcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhH
Confidence 46899999999 999999999999999999998864 23455666654443
No 149
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=91.43 E-value=0.1 Score=37.36 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=36.5
Q ss_pred HHHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 71 KASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 71 k~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
...++-|..+ .-+|.+.||++++++-+-.++.|+.|++.|+|..+
T Consensus 10 ~~il~~L~~~----~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 10 KKIIKILQND----GKAPLREISKITGLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHC----TTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHc----CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 3445444443 24799999999999999999999999999999764
No 150
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=90.88 E-value=0.46 Score=36.68 Aligned_cols=44 Identities=25% Similarity=0.230 Sum_probs=36.7
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeEEeec----CceEEEec
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKH----HAQVIYTR 130 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh----~~q~IYtr 130 (139)
.|++.|+++++|+-|.....|+.|++.|+|...... ++..+|.-
T Consensus 29 ~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~L 76 (202)
T 2p4w_A 29 YFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMI 76 (202)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEE
Confidence 699999999999999999999999999999886542 44445543
No 151
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=90.41 E-value=0.25 Score=36.88 Aligned_cols=38 Identities=16% Similarity=0.292 Sum_probs=33.8
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeec
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKH 122 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh 122 (139)
..+|...||++++|+-+..+++|+.|.+.|+|.-+...
T Consensus 27 ~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~rG~ 64 (162)
T 3k69_A 27 SKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGK 64 (162)
T ss_dssp SCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECST
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCC
Confidence 56899999999999999999999999999998665433
No 152
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=90.41 E-value=0.47 Score=37.11 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=38.2
Q ss_pred CeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceE
Q psy1871 84 YKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQV 126 (139)
Q Consensus 84 ~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~ 126 (139)
.--.|.|.|+..++++-|-|+-+|..|+++|+|..|..+.+..
T Consensus 22 ~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~~Vk~GK~ay 64 (165)
T 2vxz_A 22 DGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAFGNVAL 64 (165)
T ss_dssp TCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEETTEEE
T ss_pred hCCccHHHHHHHhCCcHHHHHHHHHHHHhcCceEEEEEccEEE
Confidence 4456999999999999999999999999999999998776543
No 153
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=90.34 E-value=0.23 Score=37.24 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=31.0
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
.|...||+.|+++-+-+++.|+.|+++|+|....
T Consensus 25 ~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 25 PSVREIARRFRITPRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC-
T ss_pred CCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEecC
Confidence 6899999999999999999999999999997653
No 154
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=90.28 E-value=0.28 Score=35.47 Aligned_cols=34 Identities=6% Similarity=0.266 Sum_probs=31.6
Q ss_pred chHHHHhhhccchHHHHHHHHHHHHcCCeeEEee
Q psy1871 88 TPSVVSERLKVRGSLARKALEELLQKGLIKQVVK 121 (139)
Q Consensus 88 TPsvlseRlkI~~SLARkaLreL~~kGlIk~Vsk 121 (139)
|...||++++|+-+..+++|..|.+.|+|.-+..
T Consensus 25 s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG 58 (145)
T 1xd7_A 25 SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG 58 (145)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC
Confidence 8899999999999999999999999999976654
No 155
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=90.05 E-value=0.35 Score=38.47 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=31.8
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
+|.+.||+++++.-|-..+.|+.|++.|+|...
T Consensus 167 ~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~ 199 (244)
T 2wte_A 167 TGITELAKMLDKSEKTLINKIAELKKFGILTQK 199 (244)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 799999999999999999999999999999876
No 156
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=89.65 E-value=0.081 Score=41.43 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=4.5
Q ss_pred CeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 84 YKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 84 ~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
.++=|-..||++|+|+-+..|+||+.|+++|+|...
T Consensus 38 ~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 73 (247)
T 2ra5_A 38 SLLGNEIELAARLGLSRPTVRQAIQSLVDKGLLVRR 73 (247)
T ss_dssp ------------------------------CEEEEE
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 455588999999999999999999999999998654
No 157
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=89.55 E-value=0.32 Score=37.24 Aligned_cols=44 Identities=9% Similarity=0.110 Sum_probs=36.6
Q ss_pred echH-H-HHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEecc
Q psy1871 87 ITPS-V-VSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRT 131 (139)
Q Consensus 87 ITPs-v-lseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtra 131 (139)
||.+ . +++++++...+|+.+|.+++++|++-.=..... .-|-.|
T Consensus 119 vt~~~~~la~~~~ws~~~a~e~L~~~e~~G~l~~D~~~~G-~~y~~N 164 (169)
T 1u5t_B 119 LTQILSSNNSKSNWTLGILMEVLQNCVDEGDLLIDKQLSG-IYYYKN 164 (169)
T ss_dssp HHHHHHTSCTTCCCCHHHHHHHHHHHHHHTSEEEEECSSC-EEEEEC
T ss_pred ccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEECCCCc-ceEEee
Confidence 8999 9 999999999999999999999999977654444 345444
No 158
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=89.55 E-value=0.29 Score=37.55 Aligned_cols=34 Identities=24% Similarity=0.502 Sum_probs=31.1
Q ss_pred ech--HHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 87 ITP--SVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 87 ITP--svlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
+|+ ..||++++++-+-..++|+.|+++|+|....
T Consensus 23 ~~~~~~~La~~l~vs~~tvs~~l~~Le~~GlV~r~~ 58 (230)
T 1fx7_A 23 VTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAG 58 (230)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECT
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 577 9999999999999999999999999997753
No 159
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=89.50 E-value=0.035 Score=40.58 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=31.7
Q ss_pred CCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 83 AYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 83 k~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
+.++ |...||++|+|+-+-.|.+|+.|++.|+|..
T Consensus 25 ~~~l-s~~eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 25 DGRI-SNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp CSSC-CTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred CCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 3444 9999999999999999999999999999985
No 160
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=89.40 E-value=0.72 Score=32.66 Aligned_cols=46 Identities=13% Similarity=0.348 Sum_probs=39.0
Q ss_pred eeechHHHHhhh-----ccchHHHHHHHHHHHHcCCeeEEeecCceEEEec
Q psy1871 85 KLITPSVVSERL-----KVRGSLARKALEELLQKGLIKQVVKHHAQVIYTR 130 (139)
Q Consensus 85 KlITPsvlseRl-----kI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtr 130 (139)
.-+|...|.+++ +|..+-.-+.|+.|++.|+|..+.-......|-.
T Consensus 25 ~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~~~~~~~y~~ 75 (131)
T 2o03_A 25 DFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDTGESVYRR 75 (131)
T ss_dssp SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECTTSCEEEEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEeCCCceEEEe
Confidence 358999999999 8999999999999999999999976666566643
No 161
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=88.53 E-value=0.13 Score=37.38 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=32.0
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
-+|++.||++++|+-+-.-++|+.|+++|+|...
T Consensus 86 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 119 (181)
T 2fbk_A 86 GLRPTELSALAAISGPSTSNRIVRLLEKGLIERR 119 (181)
T ss_dssp CBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEec
Confidence 3799999999999999999999999999999876
No 162
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=88.17 E-value=0.6 Score=36.15 Aligned_cols=34 Identities=9% Similarity=0.198 Sum_probs=31.9
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
-+|.+.||+++++.-|-+.++|+.|++.|+|...
T Consensus 21 ~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~ 54 (241)
T 2xrn_A 21 GLSLAAIAQLVGLPRSTVQRIINALEEEFLVEAL 54 (241)
T ss_dssp CEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEEC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 4799999999999999999999999999999774
No 163
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=87.53 E-value=0.87 Score=32.85 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=37.8
Q ss_pred eeechHHHHhhh-----ccchHHHHHHHHHHHHcCCeeEEeecCceEEEe
Q psy1871 85 KLITPSVVSERL-----KVRGSLARKALEELLQKGLIKQVVKHHAQVIYT 129 (139)
Q Consensus 85 KlITPsvlseRl-----kI~~SLARkaLreL~~kGlIk~Vskh~~q~IYt 129 (139)
.-+|...|.+++ +|+.+..-+.|+.|++.|+|..+.-..+...|-
T Consensus 36 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 85 (145)
T 2fe3_A 36 AHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYGDASSRFD 85 (145)
T ss_dssp SCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEEE
T ss_pred CCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEeeCCCceEEE
Confidence 357999999999 788999999999999999999987655555664
No 164
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=87.47 E-value=0.74 Score=35.60 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=31.9
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
-+|.+.||+++++.-|-+.+.|+.|++.|+|...
T Consensus 23 ~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~ 56 (249)
T 1mkm_A 23 DVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK 56 (249)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC
Confidence 4799999999999999999999999999999775
No 165
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=87.46 E-value=0.9 Score=36.92 Aligned_cols=49 Identities=16% Similarity=0.094 Sum_probs=40.4
Q ss_pred HHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEee
Q psy1871 73 SYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVK 121 (139)
Q Consensus 73 tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vsk 121 (139)
...+|+.-+..-..+|...||++|+|+-+-.++-|+.|++.|++..-..
T Consensus 6 r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i~~~~ 54 (321)
T 1bia_A 6 VPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVP 54 (321)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEET
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEec
Confidence 3445666666667899999999999999999999999999999864433
No 166
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=87.41 E-value=1.4 Score=26.61 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=31.6
Q ss_pred eeechHHHHhhh-----ccchHHHHHHHHHHHHcCCeeEEeecCceEEE
Q psy1871 85 KLITPSVVSERL-----KVRGSLARKALEELLQKGLIKQVVKHHAQVIY 128 (139)
Q Consensus 85 KlITPsvlseRl-----kI~~SLARkaLreL~~kGlIk~Vskh~~q~IY 128 (139)
..+|...|++.| +|+-+-.++-|+ +-|+| .+........|
T Consensus 18 ~~~t~~el~~~l~~~~~~vs~~Tv~R~L~---~lg~v-~~~~~~~~~~Y 62 (64)
T 2p5k_A 18 EIETQDELVDMLKQDGYKVTQATVSRDIK---ELHLV-KVPTNNGSYKY 62 (64)
T ss_dssp CCCSHHHHHHHHHHTTCCCCHHHHHHHHH---HHTCE-EEEETTTEEEE
T ss_pred CCCCHHHHHHHHHHhCCCcCHHHHHHHHH---HcCCE-EEecCCCceee
Confidence 468999999999 999998887777 45899 66655555556
No 167
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=87.30 E-value=0.26 Score=33.85 Aligned_cols=59 Identities=17% Similarity=0.274 Sum_probs=48.5
Q ss_pred HHHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEe
Q psy1871 71 KASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYT 129 (139)
Q Consensus 71 k~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYt 129 (139)
.++|+....=|-...-.+.|.|=-||+|-..-|-+++..||+.|+|-+-..+..-.|+.
T Consensus 9 D~Ly~~A~~~V~~~~~aS~S~lQR~lrIGYnRAArlid~lE~~GiVgp~~gsk~ReVL~ 67 (73)
T 2ve8_A 9 DPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIA 67 (73)
T ss_dssp CTTHHHHHHHHHHHCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSBCCCCTTSCCCBCS
T ss_pred cHHHHHHHHHHHhcCCccHHHHHHHHccChHHHHHHHHHHHHCCcCCcccCCCCceEeC
Confidence 46777777777777888999999999999999999999999999998876544334444
No 168
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=87.30 E-value=0.52 Score=36.22 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=29.3
Q ss_pred chHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 88 TPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 88 TPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
+.+.||++++|.-+-..++|+.|+++|+|...
T Consensus 26 ~~~~la~~l~vs~~tvs~~l~~Le~~GlV~r~ 57 (226)
T 2qq9_A 26 LRARIAERLEQSGPTVSQTVARMERDGLVVVA 57 (226)
T ss_dssp BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred cHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 44999999999999999999999999998764
No 169
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=87.25 E-value=1.3 Score=32.16 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=38.3
Q ss_pred eechHHHHhhh-----ccchHHHHHHHHHHHHcCCeeEEeecCceEEEec
Q psy1871 86 LITPSVVSERL-----KVRGSLARKALEELLQKGLIKQVVKHHAQVIYTR 130 (139)
Q Consensus 86 lITPsvlseRl-----kI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtr 130 (139)
-+|...|.+++ +|..+-.-+.|+.|++.|+|..+.-..+...|-.
T Consensus 42 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 91 (150)
T 2xig_A 42 HLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLETSKSGRRYEI 91 (150)
T ss_dssp CBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEEEE
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 57899999988 6888889999999999999999977666666754
No 170
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=87.05 E-value=1.2 Score=40.15 Aligned_cols=60 Identities=10% Similarity=0.068 Sum_probs=45.8
Q ss_pred HHHHHHHHhhCCCCeeechHHHHhhhc-------cchHHHHHHHHHHHHcCCeeEEeecCceEEEecc
Q psy1871 71 KASYDKLLKEVPAYKLITPSVVSERLK-------VRGSLARKALEELLQKGLIKQVVKHHAQVIYTRT 131 (139)
Q Consensus 71 k~tydKl~KEVpk~KlITPsvlseRlk-------I~~SLARkaLreL~~kGlIk~Vskh~~q~IYtra 131 (139)
.....+|+.-+.....||...|+++|+ +...+|+.+|++++.+|++-.=..... .-|.++
T Consensus 493 ~~~~~~il~l~~~~g~vT~~~la~~lg~~~~~~~Ws~~~A~e~L~~~e~eG~l~rDd~~~G-~~yypN 559 (566)
T 1w7p_D 493 DVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLLIDKQLSG-IYYYKN 559 (566)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHSCSSSCCCBCHHHHHHHHHHHHHTTSEEEEEETTE-EEEEEC
T ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCccccCcccHHHHHHHHHHHHHcCCEEEECCCCc-eEEehh
Confidence 355566655455567999999999999 999999999999999999976544443 234443
No 171
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=87.04 E-value=0.85 Score=35.73 Aligned_cols=44 Identities=20% Similarity=0.177 Sum_probs=36.2
Q ss_pred HHhhCCC-CeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 77 LLKEVPA-YKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 77 l~KEVpk-~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
|+.-+-. -.-+|.+.||+++++.-|-+-++|+.|++.|+|....
T Consensus 11 IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~ 55 (260)
T 3r4k_A 11 LLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVE 55 (260)
T ss_dssp HHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcC
Confidence 4444443 2568999999999999999999999999999987643
No 172
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=86.85 E-value=0.42 Score=39.36 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=32.8
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
=+|+..||+++++.-+-.-++|..|+++|+|....
T Consensus 420 ~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~~ 454 (487)
T 1hsj_A 420 EISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKR 454 (487)
T ss_dssp EEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEE
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecC
Confidence 48999999999999999999999999999998874
No 173
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=86.75 E-value=1.4 Score=32.12 Aligned_cols=45 Identities=9% Similarity=0.234 Sum_probs=36.7
Q ss_pred eeechHHHHhhh-----ccchHHHHHHHHHHHHcCCeeEEeecCceEEEe
Q psy1871 85 KLITPSVVSERL-----KVRGSLARKALEELLQKGLIKQVVKHHAQVIYT 129 (139)
Q Consensus 85 KlITPsvlseRl-----kI~~SLARkaLreL~~kGlIk~Vskh~~q~IYt 129 (139)
.-+|...|.+++ .|..+..-+.|+.|++.|+|..+.-......|-
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 81 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFEGGKSVFE 81 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEECGGGCEEEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 357888888888 688888899999999999999987555555664
No 174
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=86.66 E-value=0.52 Score=38.24 Aligned_cols=46 Identities=28% Similarity=0.325 Sum_probs=37.4
Q ss_pred CCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEE
Q psy1871 83 AYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIY 128 (139)
Q Consensus 83 k~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IY 128 (139)
..-+||++.|++.+++....|+.+|.+|+.+|++=.=........|
T Consensus 165 ~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~GllwvD~q~~ge~~Y 210 (234)
T 3cuq_A 165 KNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAPGEAHY 210 (234)
T ss_dssp TTSEECHHHHHHHHTCCHHHHHHHHHHHHHHTSCEEESSSSSSCEE
T ss_pred hcCcCcHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEeCCCCCccee
Confidence 4578999999999999999999999999999997543333333445
No 175
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=86.44 E-value=1.3 Score=31.54 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=30.8
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
-+|...||+.++++-+-.-++|++|+++|+|..
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~ 199 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLISA 199 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEe
Confidence 468999999999999999999999999999974
No 176
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=86.39 E-value=0.97 Score=32.18 Aligned_cols=45 Identities=13% Similarity=0.202 Sum_probs=36.9
Q ss_pred eeechHHHHhhh-----ccchHHHHHHHHHHHHcCCeeEEeecCceEEEe
Q psy1871 85 KLITPSVVSERL-----KVRGSLARKALEELLQKGLIKQVVKHHAQVIYT 129 (139)
Q Consensus 85 KlITPsvlseRl-----kI~~SLARkaLreL~~kGlIk~Vskh~~q~IYt 129 (139)
.-+|+..|.+++ +|..+-.-+.|+.|++.|+|..+.-......|-
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 82 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDGGHAVFE 82 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSSSSCEEE
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 357888998888 788888999999999999999987544445564
No 177
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=86.31 E-value=1 Score=30.24 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=35.8
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEecc
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRT 131 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtra 131 (139)
.|.+.|+++++++-|...+-|+.|++. +|..- +.++...|.-+
T Consensus 42 ~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~-~~gr~~~y~l~ 84 (99)
T 2zkz_A 42 LNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRN-RQGLEIYYSIN 84 (99)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEE-EETTEEEEECC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhhe-EeCcEEEEEEC
Confidence 799999999999999999999999999 87654 44556667643
No 178
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=86.15 E-value=1.2 Score=31.87 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=30.3
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
+|...||+.++++-.-.-++|++|+++|+|..
T Consensus 147 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~ 178 (202)
T 2zcw_A 147 ATHDELAAAVGSVRETVTKVIGELAREGYIRS 178 (202)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 79999999999999999999999999999974
No 179
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=85.87 E-value=0.58 Score=37.17 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=36.6
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCc-----eEEEec
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHA-----QVIYTR 130 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~-----q~IYtr 130 (139)
+|.+.|++.++|+-+.....|+.|++.|+|.......+ ...|.-
T Consensus 26 ~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~L 74 (232)
T 2qlz_A 26 CYFSLLSSKVSVSSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKI 74 (232)
T ss_dssp TCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEE
Confidence 68899999999999999999999999999998544444 555653
No 180
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=85.80 E-value=0.93 Score=35.91 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=33.0
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
-+|++.||+++++.-|-.=++|..|+++|+|....
T Consensus 174 ~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~~ 208 (250)
T 1p4x_A 174 IVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKER 208 (250)
T ss_dssp CEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEE
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeC
Confidence 48999999999999999999999999999999874
No 181
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=85.61 E-value=1.4 Score=31.61 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=30.7
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
-+|...||+.++++-+-.-++|++|+++|+|..
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~ 201 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKL 201 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 468999999999999999999999999999964
No 182
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=85.57 E-value=1.7 Score=33.04 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=33.6
Q ss_pred CCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 83 AYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 83 k~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
...-+|.+.+|++|+|+-|-.-+.|+.||+.|+|....
T Consensus 24 ~~~~~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~~ 61 (230)
T 3cta_A 24 NRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTV 61 (230)
T ss_dssp SEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34557899999999999999999999999999987753
No 183
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=85.45 E-value=1.3 Score=31.10 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=34.3
Q ss_pred CCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEee
Q psy1871 82 PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVK 121 (139)
Q Consensus 82 pk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vsk 121 (139)
|.-. ++++.|++++.+.-|--.+.|..|+..|+|.....
T Consensus 33 ~g~~-~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r~~~ 71 (96)
T 2obp_A 33 GATP-WSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSVE 71 (96)
T ss_dssp TCCC-CBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCC-cCHHHHHHHhCCchhhHHHHHHHHHHCCCEEeecC
Confidence 4444 49999999999999999999999999999997543
No 184
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=85.23 E-value=1.5 Score=31.35 Aligned_cols=34 Identities=12% Similarity=0.171 Sum_probs=31.3
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
--+|...||+.++++-+-.-++|++|.++|+|..
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 195 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAEEGVVRL 195 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 4479999999999999999999999999999974
No 185
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=84.87 E-value=1.2 Score=32.17 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=30.2
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
+|-..||+.++++-+-.-++|++|+++|+|..
T Consensus 179 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 210 (227)
T 3dkw_A 179 VAKQLVAGHLSIQPETFSRIMHRLGDEGIIHL 210 (227)
T ss_dssp SCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEe
Confidence 68899999999999999999999999999965
No 186
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=84.39 E-value=1 Score=35.16 Aligned_cols=35 Identities=6% Similarity=0.067 Sum_probs=32.3
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
.-+|.+.||+++++.-|-+.++|+.|++.|+|...
T Consensus 37 ~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~ 71 (260)
T 2o0y_A 37 PTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSR 71 (260)
T ss_dssp SSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEC
Confidence 35799999999999999999999999999998764
No 187
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=84.20 E-value=1.7 Score=31.46 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=30.3
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
+|...||+.++++-.-.-++|++|.++|+|..
T Consensus 178 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 209 (227)
T 3d0s_A 178 LTQEEIAQLVGASRETVNKALADFAHRGWIRL 209 (227)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEe
Confidence 79999999999999999999999999999965
No 188
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=84.07 E-value=1.2 Score=31.61 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=30.6
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
-+|...||+-++++-.-.-++|++|+++|+|..
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 196 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVHV 196 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 479999999999999999999999999999864
No 189
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=83.77 E-value=0.73 Score=33.90 Aligned_cols=42 Identities=19% Similarity=0.056 Sum_probs=34.8
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEee-cCceEEEecc
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVVK-HHAQVIYTRT 131 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vsk-h~~q~IYtra 131 (139)
.+|+..||+.++|+.+ .||.-++.|+|.++.+ .++...|+..
T Consensus 4 ~~tI~evA~~~Gvs~~----tLR~ye~~GLl~p~~r~~~g~R~Y~~~ 46 (146)
T 3hh0_A 4 AWLISEFASVGDVTVR----ALRYYDKINLLKPSDYTEGGHRLYTKD 46 (146)
T ss_dssp CBCHHHHHHHHTCCHH----HHHHHHHTTSSCCSEECTTSCEEBCHH
T ss_pred CCcHHHHHHHHCcCHH----HHHHHHHCCCCCCCeECCCCCEeeCHH
Confidence 6899999999999875 5899999999999743 4677888853
No 190
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=83.76 E-value=0.7 Score=33.92 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=34.2
Q ss_pred CCCe--eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEee-cCceEEEecc
Q psy1871 82 PAYK--LITPSVVSERLKVRGSLARKALEELLQKGLIKQVVK-HHAQVIYTRT 131 (139)
Q Consensus 82 pk~K--lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vsk-h~~q~IYtra 131 (139)
+.|+ .+|...||+.++|+.+ .||.-++.|+|.++.+ .+..+.|+..
T Consensus 10 k~M~~~~~~I~evA~~~gvs~~----tLR~Ye~~Gll~p~~r~~~g~R~Y~~~ 58 (148)
T 3gpv_A 10 KRMNDMYYTIGQVAKMQHLTIS----QIRYYDKQGLFPFLQRNEKGDRIFNEE 58 (148)
T ss_dssp -----CCBCHHHHHHHTTCCHH----HHHHHHHTTCCTTCEECTTCCEEBCHH
T ss_pred CccccCceeHHHHHHHHCcCHH----HHHHHHHCCCCCCCcCCCCCCeecCHH
Confidence 3454 7899999999999865 5889999999986544 4677888753
No 191
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=83.75 E-value=0.61 Score=38.78 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=34.9
Q ss_pred CCCCeeechHHHHhhh--ccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 81 VPAYKLITPSVVSERL--KVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 81 Vpk~KlITPsvlseRl--kI~~SLARkaLreL~~kGlIk~Vs 120 (139)
+-...-|+..+||++| +|+-...|+-|.+||+.|+|..+.
T Consensus 31 l~~~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~~GlL~r~H 72 (338)
T 1stz_A 31 IENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQPH 72 (338)
T ss_dssp HHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEECCS
T ss_pred HHcCCCccHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEcc
Confidence 4555779999999999 888889999999999999998743
No 192
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=83.68 E-value=1.1 Score=34.77 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=36.4
Q ss_pred HHHhhCCCC-eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 76 KLLKEVPAY-KLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 76 Kl~KEVpk~-KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
+|+..+-.. .-+|.+.||+++++.-|-+.++|+.|++.|+|...
T Consensus 18 ~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~ 62 (257)
T 2g7u_A 18 AVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGS 62 (257)
T ss_dssp HHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC
Confidence 344455432 45799999999999999999999999999999764
No 193
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=83.65 E-value=2.5 Score=29.48 Aligned_cols=42 Identities=10% Similarity=0.138 Sum_probs=32.1
Q ss_pred chHHHHhhh--------ccchHHHHHHHHHHHHcCCeeEEe----ecCceEEEe
Q psy1871 88 TPSVVSERL--------KVRGSLARKALEELLQKGLIKQVV----KHHAQVIYT 129 (139)
Q Consensus 88 TPsvlseRl--------kI~~SLARkaLreL~~kGlIk~Vs----kh~~q~IYt 129 (139)
+.|.|.+++ .|+-+.-..+|+.|+++|+|.... ..++..+|.
T Consensus 27 ~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~ 80 (116)
T 3f8b_A 27 YVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYR 80 (116)
T ss_dssp CHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEE
Confidence 567777666 799999999999999999999864 234555664
No 194
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=83.39 E-value=2.7 Score=30.67 Aligned_cols=43 Identities=16% Similarity=0.212 Sum_probs=33.8
Q ss_pred echHHHHhhh--------ccchHHHHHHHHHHHHcCCeeEEee----cCceEEEe
Q psy1871 87 ITPSVVSERL--------KVRGSLARKALEELLQKGLIKQVVK----HHAQVIYT 129 (139)
Q Consensus 87 ITPsvlseRl--------kI~~SLARkaLreL~~kGlIk~Vsk----h~~q~IYt 129 (139)
.+.+.|++++ .|+-+.--.+|+.|+++|+|..... .++..+|.
T Consensus 55 ~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~ 109 (145)
T 1xma_A 55 SYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYR 109 (145)
T ss_dssp EEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEE
T ss_pred CCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEE
Confidence 5888888887 5999999999999999999988642 34555664
No 195
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=83.39 E-value=0.22 Score=40.65 Aligned_cols=43 Identities=21% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 76 KLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 76 Kl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
.|+..+-...-+|...||++|+|+-+..|+.|+.|+++|+|..
T Consensus 24 ~iL~~l~~~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~~Glv~~ 66 (345)
T 2o0m_A 24 QILRNIYWMQPIGRRSLSETMGITERVLRTETDVLKQLNLIEP 66 (345)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4555555556799999999999999999999999999999973
No 196
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=83.04 E-value=1.4 Score=31.84 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=30.4
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
+|-..||+.++++-+-.-++|++|+++|+|..
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~ 219 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLKKLQADGLLHA 219 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEE
Confidence 68999999999999999999999999999975
No 197
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=82.99 E-value=1.4 Score=32.10 Aligned_cols=33 Identities=9% Similarity=0.138 Sum_probs=30.8
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
-+|...||+.++++-...-++|++|.++|+|..
T Consensus 180 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 212 (232)
T 2gau_A 180 YLSREELATLSNMTVSNAIRTLSTFVSERMLAL 212 (232)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEee
Confidence 479999999999999999999999999999864
No 198
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=82.97 E-value=2.4 Score=30.44 Aligned_cols=47 Identities=15% Similarity=0.268 Sum_probs=37.8
Q ss_pred eeechHHHHhhh-----ccchHHHHHHHHHHHHcCCeeEEeecCceEEEecc
Q psy1871 85 KLITPSVVSERL-----KVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRT 131 (139)
Q Consensus 85 KlITPsvlseRl-----kI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtra 131 (139)
.-+|...|.+++ +|+.+---+.|+.|++.|+|..+.-.....-|-.+
T Consensus 28 ~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~~ 79 (139)
T 3mwm_A 28 EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVYRRC 79 (139)
T ss_dssp SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEECC
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEEEC
Confidence 367888888888 58888889999999999999998765555667543
No 199
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=82.65 E-value=1.2 Score=34.86 Aligned_cols=43 Identities=19% Similarity=0.174 Sum_probs=35.5
Q ss_pred HHhhCCC-CeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 77 LLKEVPA-YKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 77 l~KEVpk-~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
|+.-+-. -.-+|.+.||+++++.-|-+.++|+.|++.|+|...
T Consensus 26 iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~ 69 (265)
T 2ia2_A 26 VIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVATD 69 (265)
T ss_dssp HHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEES
T ss_pred HHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 3444432 245899999999999999999999999999999763
No 200
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=82.51 E-value=1.3 Score=32.96 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=36.5
Q ss_pred HHHHHhhCCC-CeeechHHHHhhhccchHHHHHHHHHHHHcCC-eeE
Q psy1871 74 YDKLLKEVPA-YKLITPSVVSERLKVRGSLARKALEELLQKGL-IKQ 118 (139)
Q Consensus 74 ydKl~KEVpk-~KlITPsvlseRlkI~~SLARkaLreL~~kGl-Ik~ 118 (139)
..+|+..+.. -..+|...||++|+|+-+..++=|+.|++.|+ |.-
T Consensus 23 ~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 4445555542 35699999999999999999999999999999 753
No 201
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=82.26 E-value=2.5 Score=33.35 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=41.3
Q ss_pred eeeCHHHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 67 VLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 67 Vl~Dk~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
..+..+-|=++.-+. + .-|+...||++|+++-+-.+.+|+.|.++|+|..
T Consensus 13 ls~s~EdYLk~I~~L-~-~~V~~~~LA~~LgvS~~SV~~~lkkL~e~GLV~~ 62 (200)
T 2p8t_A 13 PEYTVEDVLAVIFLL-K-EPLGRKQISERLELGEGSVRTLLRKLSHLDIIRS 62 (200)
T ss_dssp -CCCHHHHHHHHHHT-T-SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHHHH-c-CCccHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 455667777766666 2 4599999999999999999999999999999854
No 202
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=82.04 E-value=1.5 Score=35.49 Aligned_cols=46 Identities=20% Similarity=0.282 Sum_probs=36.7
Q ss_pred CCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEE
Q psy1871 83 AYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIY 128 (139)
Q Consensus 83 k~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IY 128 (139)
..-+||++.|++.|++....|+.+|.+|+..|++=.=........|
T Consensus 178 ~~g~vt~~~L~~~lgW~~~Ra~~~L~~l~~~G~lwvD~q~~~e~~Y 223 (233)
T 1u5t_A 178 ILGYSSISLLKANLGWEAVRSKSALDEMVANGLLWIDYQGGAEALY 223 (233)
T ss_dssp TTSCCBHHHHHHHHCCCSHHHHHHHHHHHHTTSSEEECSSSSSCEE
T ss_pred hcCcCcHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeCCCCCccce
Confidence 4578999999999999999999999999999997543333223444
No 203
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=82.02 E-value=0.97 Score=31.71 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=51.6
Q ss_pred hhccceeeCHHHHHHHHhhCCC----CeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 62 KLNNQVLFDKASYDKLLKEVPA----YKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 62 Klnn~Vl~Dk~tydKl~KEVpk----~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
++.+-++|..++++++...+-. ..-||++.+-|.++++-..|-.+|+.|-+.|+.+.+.
T Consensus 52 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~TrR~g 114 (121)
T 2pjp_A 52 AIVKDRYYRNDRIVEFANMIRDLDQECGSTCAADFRDRLGVGRKLAIQILEYFDRIGFTRRRG 114 (121)
T ss_dssp EEETTEEEEHHHHHHHHHHHHHHHHHHSSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEET
T ss_pred EecCCceECHHHHHHHHHHHHHHHHHCCCccHHHHHHHHCCcHHHHHHHHHHHhhcCCeEeeC
Confidence 3567789999999998887766 3779999999999999999999999999999998874
No 204
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=81.85 E-value=1 Score=35.71 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=29.9
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
-+|.+.||+++++.-|-+-++|+.|++.|+|...
T Consensus 45 ~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~ 78 (275)
T 3mq0_A 45 DLTAAELTRFLDLPKSSAHGLLAVMTELDLLARS 78 (275)
T ss_dssp CEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEC
Confidence 4899999999999999999999999999998764
No 205
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=81.80 E-value=2.1 Score=34.79 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=32.9
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
-+|-+.||++++++-+-..+++++|++.|+|..+.
T Consensus 33 ~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~~~ 67 (380)
T 2hoe_A 33 PVSRVELAEELGLTKTTVGEIAKIFLEKGIVVEEK 67 (380)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeec
Confidence 47999999999999999999999999999999874
No 206
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=81.27 E-value=1.7 Score=32.34 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=30.3
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
+|-..||+.++++-.-.-++|++|+++|+|..
T Consensus 194 lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~ 225 (243)
T 3la7_A 194 LSHQAIAEAIGSTRVTVTRLLGDLREKKMISI 225 (243)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEE
Confidence 68899999999999999999999999999974
No 207
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=81.17 E-value=2.4 Score=31.99 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=30.6
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
-+|-..||+.++++-.-.-++|++|+++|+|..
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~ 249 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLISA 249 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 368899999999999999999999999999974
No 208
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=81.16 E-value=2.7 Score=30.34 Aligned_cols=44 Identities=23% Similarity=0.261 Sum_probs=35.0
Q ss_pred eechHHHHhhh-----ccchHHHHHHHHHHHHcCCeeEEeecCceEEEe
Q psy1871 86 LITPSVVSERL-----KVRGSLARKALEELLQKGLIKQVVKHHAQVIYT 129 (139)
Q Consensus 86 lITPsvlseRl-----kI~~SLARkaLreL~~kGlIk~Vskh~~q~IYt 129 (139)
-+|...|-+++ +|+.+---+.|+.|++.|+|..+.-..+..-|-
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y~ 81 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHLGHGAPTYH 81 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEE
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 36777777777 577788889999999999999997655555665
No 209
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=80.97 E-value=1.8 Score=31.43 Aligned_cols=33 Identities=9% Similarity=0.147 Sum_probs=30.7
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
-+|-..||+.++++-.-.-++|++|.++|+|..
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~ 207 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILEV 207 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEe
Confidence 369999999999999999999999999999974
No 210
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=80.94 E-value=1.8 Score=31.33 Aligned_cols=33 Identities=9% Similarity=0.175 Sum_probs=30.4
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
-+|...||+.++++-.-.-++|++|+++|+|..
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 199 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMGILER 199 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEE
Confidence 368899999999999999999999999999864
No 211
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=80.92 E-value=1.6 Score=31.69 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=30.2
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
+|...||+.++++-.-.-++|++|+++|+|..
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~ 195 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLIKEGYISR 195 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEE
Confidence 79999999999999999999999999999865
No 212
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=80.66 E-value=3.9 Score=28.73 Aligned_cols=43 Identities=19% Similarity=0.165 Sum_probs=33.6
Q ss_pred echHHHHhhh------ccchHHHHHHHHHHHHcCCeeEEee----cCceEEEe
Q psy1871 87 ITPSVVSERL------KVRGSLARKALEELLQKGLIKQVVK----HHAQVIYT 129 (139)
Q Consensus 87 ITPsvlseRl------kI~~SLARkaLreL~~kGlIk~Vsk----h~~q~IYt 129 (139)
.+.|.|.+++ .|+-+.--.+|+.|+++|+|..... .++..+|.
T Consensus 25 ~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~ 77 (117)
T 4esf_A 25 TYGYEITRHLNDLGFTEVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYS 77 (117)
T ss_dssp BCHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEE
T ss_pred CCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEE
Confidence 4678888887 7999999999999999999998742 23455664
No 213
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=80.43 E-value=1.6 Score=31.10 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=30.6
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
-+|...||+.++++-.-.-++|++|+++|+|..
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~ 171 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLADLRREGLIAT 171 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 379999999999999999999999999999864
No 214
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=80.36 E-value=3.8 Score=27.64 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=30.5
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
.|.-+|+.+|+.....||.+|..|.+.|-+..-
T Consensus 19 MTaGEVAA~f~w~Le~ar~aLeqLf~~G~LRKR 51 (68)
T 3i71_A 19 MTAGEVAAHFGWPLEKARNALEQLFSAGTLRKR 51 (68)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHhCCcHHHHHHHHHHHHhcchhhhh
Confidence 588999999999999999999999999998753
No 215
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=80.05 E-value=2.2 Score=29.55 Aligned_cols=43 Identities=19% Similarity=0.259 Sum_probs=33.2
Q ss_pred echHHHHhhhc--------cch-HHHHHHHHHHHHcCCeeEEee---cCceEEEe
Q psy1871 87 ITPSVVSERLK--------VRG-SLARKALEELLQKGLIKQVVK---HHAQVIYT 129 (139)
Q Consensus 87 ITPsvlseRlk--------I~~-SLARkaLreL~~kGlIk~Vsk---h~~q~IYt 129 (139)
.+.+.|++.+. |+- +.--.+|+.|++.|+|..... .++..+|.
T Consensus 27 ~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~ 81 (118)
T 2esh_A 27 SHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYR 81 (118)
T ss_dssp BCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEE
T ss_pred CCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEE
Confidence 47888888884 777 778899999999999988653 34555664
No 216
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=80.02 E-value=0.51 Score=36.32 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=42.0
Q ss_pred HHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 72 ASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 72 ~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
+=.+.|+..+.....+|...||++|+|+.+..|+=|.||...|++..+
T Consensus 12 eR~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~l~~r~ 59 (190)
T 4a0z_A 12 KRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPELRKRI 59 (190)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCcchhhHh
Confidence 345677888888899999999999999999999999999999987654
No 217
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=79.82 E-value=2 Score=31.86 Aligned_cols=32 Identities=13% Similarity=0.265 Sum_probs=30.3
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
+|-..||+.++++-.-.-++|++|+++|+|..
T Consensus 178 ~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~ 209 (250)
T 3e6c_C 178 LSQKSIGEITGVHHVTVSRVLASLKRENILDK 209 (250)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEe
Confidence 69999999999999999999999999999975
No 218
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=79.72 E-value=1.3 Score=30.42 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=32.9
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeEEe-ecCceEEEecc
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQVV-KHHAQVIYTRT 131 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs-kh~~q~IYtra 131 (139)
+|+..+|+.++|+.+ .||..++.|+|.++. ..++...|+..
T Consensus 3 ~~i~e~A~~~gvs~~----tLR~ye~~Gll~p~~~~~~g~R~Y~~~ 44 (109)
T 1r8d_A 3 YQVKQVAEISGVSIR----TLHHYDNIELLNPSALTDAGYRLYSDA 44 (109)
T ss_dssp BCHHHHHHHHSCCHH----HHHHHHHTTSSCCSEECTTCCEEBCHH
T ss_pred ccHHHHHHHHCcCHH----HHHHHHHCCCCCCCeECCCCCeeeCHH
Confidence 688999999998865 578899999999875 35667788753
No 219
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=79.49 E-value=2 Score=33.99 Aligned_cols=42 Identities=19% Similarity=0.306 Sum_probs=35.1
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEE
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVI 127 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~I 127 (139)
.--|+..||+++++.-|.-...|++|.+.|+|+ -.+..+..|
T Consensus 177 ~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~-~~~~~~~~~ 218 (232)
T 2qlz_A 177 GRATVEELSDRLNLKEREVREKISEMARFVPVK-IINDNTVVL 218 (232)
T ss_dssp SEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEE-EETTTEEEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeE-EecCCeEEe
Confidence 567999999999999999999999999999997 334444433
No 220
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=79.48 E-value=4.5 Score=27.57 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=30.7
Q ss_pred chHHHHhh----hccchHHHHHHHHHHHHcCCeeEEee--c-CceEEEe
Q psy1871 88 TPSVVSER----LKVRGSLARKALEELLQKGLIKQVVK--H-HAQVIYT 129 (139)
Q Consensus 88 TPsvlseR----lkI~~SLARkaLreL~~kGlIk~Vsk--h-~~q~IYt 129 (139)
+.+.|.+. ++|+-+.--.+|+.|++.|+|..... . ++..+|.
T Consensus 24 ~gyel~~~l~~~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~ 72 (108)
T 3l7w_A 24 YGYDISQTIKLIASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYH 72 (108)
T ss_dssp EHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEE
T ss_pred cHHHHHHHHHHHhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEE
Confidence 44554444 68999999999999999999988642 2 3455564
No 221
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=79.43 E-value=1.9 Score=31.65 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=30.5
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
-+|...||+.++++-.-.-++|++|.++|+|..
T Consensus 186 ~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~ 218 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNISKTLNELQDNGLIEL 218 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEE
T ss_pred cCCHHHHHHHhCCChhHHHHHHHHHHHCCCEEe
Confidence 379999999999999999999999999999964
No 222
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=78.74 E-value=1.4 Score=36.49 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=36.8
Q ss_pred HHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 77 LLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 77 l~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
|+..+-...-+|-+.||++++++-+-..+++++|++.|+|....
T Consensus 44 il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~~~ 87 (429)
T 1z05_A 44 VYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHETT 87 (429)
T ss_dssp HHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 33333344458999999999999999999999999999998874
No 223
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=78.63 E-value=2 Score=30.30 Aligned_cols=32 Identities=25% Similarity=0.463 Sum_probs=31.2
Q ss_pred eechHHHHh-hhccchHHHHHHHHHHHHcCCee
Q psy1871 86 LITPSVVSE-RLKVRGSLARKALEELLQKGLIK 117 (139)
Q Consensus 86 lITPsvlse-RlkI~~SLARkaLreL~~kGlIk 117 (139)
.+|++.|+| ++.+.-|.--+.|+-|+++|+|.
T Consensus 30 ~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe 62 (95)
T 1bja_A 30 FITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE 62 (95)
T ss_dssp TBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE
T ss_pred CCCHHHHHHHHhcccHHHHHHHHHHHHHCCCee
Confidence 899999999 99999999999999999999998
No 224
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=78.54 E-value=1.6 Score=35.68 Aligned_cols=44 Identities=11% Similarity=0.200 Sum_probs=37.6
Q ss_pred HHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 76 KLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 76 Kl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
+|+.-+-...-+|-+.||++++++-+-..+++++|++.|+|..+
T Consensus 20 ~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~~ 63 (406)
T 1z6r_A 20 AVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQEL 63 (406)
T ss_dssp HHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEee
Confidence 34444445556899999999999999999999999999999885
No 225
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=78.03 E-value=2.5 Score=32.69 Aligned_cols=33 Identities=9% Similarity=0.177 Sum_probs=31.2
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
=+|+..||+++++.-.+.++.||.|...|++..
T Consensus 39 ~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~ 71 (335)
T 2r3s_A 39 IESSQSLAQKCQTSERGMRMLCDYLVIIGFMTK 71 (335)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEe
Confidence 479999999999999999999999999999975
No 226
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=78.00 E-value=2 Score=31.75 Aligned_cols=43 Identities=37% Similarity=0.414 Sum_probs=35.1
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEecc
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRT 131 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtra 131 (139)
+++|...||+.++|+.+ .||.-++.|+|.+.-..++...|+..
T Consensus 10 ~~~~i~e~A~~~gvs~~----TLR~ye~~Gll~p~r~~~g~R~Y~~~ 52 (154)
T 2zhg_A 10 ALLTPGEVAKRSGVAVS----ALHFYESKGLITSIRNSGNQRRYKRD 52 (154)
T ss_dssp CCBCHHHHHHHHTSCHH----HHHHHHHTTSSCCEECTTSCEEBCTT
T ss_pred cCCCHHHHHHHHCcCHH----HHHHHHHcCCCCcccCCCCCEEeCHH
Confidence 47899999999999865 68999999999986444677888754
No 227
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=77.67 E-value=5.6 Score=27.72 Aligned_cols=43 Identities=19% Similarity=0.194 Sum_probs=33.6
Q ss_pred echHHHHhhhc------cchHHHHHHHHHHHHcCCeeEEee----cCceEEEe
Q psy1871 87 ITPSVVSERLK------VRGSLARKALEELLQKGLIKQVVK----HHAQVIYT 129 (139)
Q Consensus 87 ITPsvlseRlk------I~~SLARkaLreL~~kGlIk~Vsk----h~~q~IYt 129 (139)
.+.|.|.+++. |+-+.--.+|+.|+++|+|..... .++..+|.
T Consensus 23 ~~Gyei~~~l~~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~ 75 (115)
T 4esb_A 23 VYGYELSTKLNKHGFTFVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYH 75 (115)
T ss_dssp EEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEE
T ss_pred CCHHHHHHHHHHcCCCCCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEE
Confidence 47788888885 899999999999999999987642 23455664
No 228
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=77.08 E-value=0.49 Score=42.12 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEec
Q psy1871 76 KLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTR 130 (139)
Q Consensus 76 Kl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtr 130 (139)
.|+.-+..+.-||-+.|++.++++-.-|+++|+.|.++|+|+.+-. .+-.-|..
T Consensus 520 ~I~~~l~~~g~it~~di~~l~~ls~~qa~~~L~~Lv~~G~l~~~G~-gr~t~Y~~ 573 (583)
T 3lmm_A 520 AAMLWLSEVGDLATSDLMAMCGVSRGTAKACVDGLVDEERVVAVGG-GRSRRYRL 573 (583)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEeCC-CCceEEEE
Confidence 4555556678899999999999999999999999999999988754 34445654
No 229
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=76.70 E-value=1.8 Score=33.05 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=19.9
Q ss_pred cchHHHHHHHHHHHHcCCeeEEe
Q psy1871 98 VRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 98 I~~SLARkaLreL~~kGlIk~Vs 120 (139)
=++|++|.+|+.||+-|+|....
T Consensus 96 asg~iiR~~LQqLE~~g~vek~~ 118 (144)
T 3u5c_T 96 ASGSINRKVLQALEKIGIVEISP 118 (144)
T ss_dssp CCHHHHHHHHHHHHHTTSEECCS
T ss_pred cCcHHHHHHHHHHHHCCCeeecC
Confidence 35799999999999999987654
No 230
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=76.56 E-value=6.2 Score=27.66 Aligned_cols=42 Identities=12% Similarity=0.060 Sum_probs=32.8
Q ss_pred chHHHHhhh------ccchHHHHHHHHHHHHcCCeeEEee----cCceEEEe
Q psy1871 88 TPSVVSERL------KVRGSLARKALEELLQKGLIKQVVK----HHAQVIYT 129 (139)
Q Consensus 88 TPsvlseRl------kI~~SLARkaLreL~~kGlIk~Vsk----h~~q~IYt 129 (139)
+.|.|.+++ .|+-+.--.+|+.|+++|+|..... .++..+|.
T Consensus 28 ~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~ 79 (116)
T 3hhh_A 28 YGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYR 79 (116)
T ss_dssp CHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEE
T ss_pred CHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEE
Confidence 677888887 6999999999999999999988642 23455664
No 231
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=76.31 E-value=2.7 Score=32.28 Aligned_cols=43 Identities=23% Similarity=0.127 Sum_probs=35.7
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEee--cCceEEEecc
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVK--HHAQVIYTRT 131 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vsk--h~~q~IYtra 131 (139)
++.|...+|+.++|+. +.||.-++.|||.+... .++.+.|+..
T Consensus 4 ~~~~i~e~a~~~gvs~----~tlr~y~~~gll~p~~~d~~~g~R~y~~~ 48 (278)
T 1r8e_A 4 SYYSIGEVSKLANVSI----KALRYYDKIDLFKPAYVDPDTSYRYYTDS 48 (278)
T ss_dssp CEEEHHHHHHHHTCCH----HHHHHHHHTTSSCCSEECTTTCCEEEETG
T ss_pred CcEeHHHHHHHHCcCH----HHHHHHHHCCCCCCCccCCCCCccccCHH
Confidence 5789999999999875 56899999999998754 5677889864
No 232
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=75.68 E-value=1.9 Score=32.97 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=20.7
Q ss_pred ccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 97 KVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 97 kI~~SLARkaLreL~~kGlIk~Vs 120 (139)
+=++|++|.+|++||+-|+|...-
T Consensus 97 ~asg~iiR~~LQqLE~~g~Vek~~ 120 (146)
T 3iz6_S 97 KSSGAISRNILQQLQKMGIIDVDP 120 (146)
T ss_dssp CCCHHHHHHHHHHHHHHTSEEEET
T ss_pred CCCcHHHHHHHHHHHHCCCeEecC
Confidence 346899999999999999998754
No 233
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=75.45 E-value=1.9 Score=29.69 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=32.3
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeEEe-ecCceEEEecc
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQVV-KHHAQVIYTRT 131 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs-kh~~q~IYtra 131 (139)
+|...+|+.++|+.+ .||.-++.|+|.++. ..++...|+..
T Consensus 2 ~~i~e~A~~~gvs~~----tLR~ye~~Gll~p~~r~~~g~R~Y~~~ 43 (108)
T 2vz4_A 2 YSVGQVAGFAGVTVR----TLHHYDDIGLLVPSERSHAGHRRYSDA 43 (108)
T ss_dssp BCHHHHHHHHTCCHH----HHHHHHHHTSSCCSEECSSCCEEBCHH
T ss_pred CCHHHHHHHHCcCHH----HHHHHHHCCCCCCCccCCCCCeecCHH
Confidence 478899999998865 578899999999875 34567788753
No 234
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=75.28 E-value=3.7 Score=27.74 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=35.0
Q ss_pred HHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEe
Q psy1871 90 SVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYT 129 (139)
Q Consensus 90 svlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYt 129 (139)
..++.||..+.+.-++.|+.|-+++.|.....+.....|.
T Consensus 37 ~ql~~rF~p~~~~IKk~IE~LIereYl~R~~~~~~~y~Y~ 76 (77)
T 3tdu_C 37 TQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYL 76 (77)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEEC
T ss_pred HHHhCcCCCCHHHHHHHHHHHHhhhHhhcCCCCCceEEEe
Confidence 4577899999999999999999999999987777777775
No 235
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=75.13 E-value=3.1 Score=32.67 Aligned_cols=34 Identities=24% Similarity=0.211 Sum_probs=32.1
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
-+|+..||+++++.-...+++||.|...|++...
T Consensus 56 ~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~ 89 (352)
T 3mcz_A 56 GRTPAEVAASFGMVEGKAAILLHALAALGLLTKE 89 (352)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEec
Confidence 5899999999999999999999999999999874
No 236
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=74.65 E-value=4.7 Score=31.84 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=36.5
Q ss_pred HHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 72 ASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 72 ~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
.++|.|. +-| +|...||+++++.-.+.++.||.|..-|++...
T Consensus 40 ~i~~~l~-~~~----~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~ 82 (374)
T 1qzz_A 40 RLVDHLL-AGA----DTLAGLADRTDTHPQALSRLVRHLTVVGVLEGG 82 (374)
T ss_dssp THHHHHH-TTC----CSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECC
T ss_pred ChHHHHh-CCC----CCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEe
Confidence 4566663 333 799999999999999999999999999999764
No 237
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=74.58 E-value=0.54 Score=38.92 Aligned_cols=42 Identities=12% Similarity=0.234 Sum_probs=35.3
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEec
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTR 130 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtr 130 (139)
.|++.||++++|.-|-+..+|+.|+++|+|.... .+-..|..
T Consensus 33 ~t~~eia~~~gv~~~~Vy~~L~~L~~~GlV~~~~--g~p~~y~a 74 (342)
T 3qph_A 33 STAKEISTKSGIPYNRVYDTISSLKLRGFVTEIE--GTPKVYAA 74 (342)
T ss_dssp HHHSCCSSSTTSSSCSCCHHHHHHHHHTSEEEEC--CTTCEEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEc--CceeEEEE
Confidence 4889999999999999999999999999998763 33445663
No 238
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=74.21 E-value=2 Score=33.94 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=31.9
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
=+|+..|++++.+.-+--=.+|+.|+++|+|...
T Consensus 50 ~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~ 83 (250)
T 1p4x_A 50 TLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKV 83 (250)
T ss_dssp EEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEE
T ss_pred CcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEec
Confidence 4799999999999999999999999999999887
No 239
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=74.20 E-value=3.1 Score=30.64 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=28.5
Q ss_pred echHHHHhhhccchH-HHHHHHHHHHHcCCeeE
Q psy1871 87 ITPSVVSERLKVRGS-LARKALEELLQKGLIKQ 118 (139)
Q Consensus 87 ITPsvlseRlkI~~S-LARkaLreL~~kGlIk~ 118 (139)
+|-..||+.++++-+ -.-++|++|+++|+|..
T Consensus 170 ~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~ 202 (238)
T 2bgc_A 170 LTMQELGYSSGIAHSSAVSRIISKLKQEKVIVY 202 (238)
T ss_dssp CCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEe
Confidence 788999999999984 66789999999999865
No 240
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=74.10 E-value=2.2 Score=27.81 Aligned_cols=41 Identities=12% Similarity=0.293 Sum_probs=31.6
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHc-CCeeEEeec-CceEEEec
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQK-GLIKQVVKH-HAQVIYTR 130 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~k-GlIk~Vskh-~~q~IYtr 130 (139)
.+|+..+|+.++|+.+ .||.-+++ |++.+.-.. ++...|+.
T Consensus 5 ~~~i~e~A~~~gvs~~----tlR~ye~~~gl~~p~r~~~~g~R~Y~~ 47 (81)
T 2jml_A 5 TLRIRTIARMTGIREA----TLRAWERRYGFPRPLRSEGNNYRVYSR 47 (81)
T ss_dssp CEEHHHHHHTTSTTHH----HHHHHHHHTCCSCCBSSSCSSSCEECH
T ss_pred cccHHHHHHHHCcCHH----HHHHHHHhCCCCCCcCCCCCCeeecCH
Confidence 5799999999998865 57788997 998875333 56677874
No 241
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=73.91 E-value=3.1 Score=32.64 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=36.6
Q ss_pred HHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 72 ASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 72 ~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
.++|.|.. - -+|+..||+++++.-.+.++.||.|..-|++...
T Consensus 29 glf~~l~~-g----~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~ 71 (332)
T 3i53_A 29 RVADHIAA-G----HRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRD 71 (332)
T ss_dssp THHHHHHT-T----CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred ChHHHHhc-C----CCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEec
Confidence 45666643 2 3899999999999999999999999999999765
No 242
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=73.54 E-value=3.6 Score=32.72 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=31.6
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
-+|...||+++++.-.+.+++||.|..-|++..
T Consensus 55 ~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~ 87 (348)
T 3lst_A 55 PRTPAELAAATGTDADALRRVLRLLAVRDVVRE 87 (348)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEe
Confidence 479999999999999999999999999999987
No 243
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=73.48 E-value=3.5 Score=32.13 Aligned_cols=43 Identities=5% Similarity=-0.036 Sum_probs=36.3
Q ss_pred HHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 72 ASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 72 ~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
.++|.|.. -| +|...||+++++.-.+.++.||.|..-|++...
T Consensus 32 gi~~~l~~-~~----~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~ 74 (334)
T 2ip2_A 32 GLADLIES-GI----DSDETLAAAVGSDAERIHRLMRLLVAFEIFQGD 74 (334)
T ss_dssp THHHHHHT-TC----CSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CcHHHHhC-CC----CCHHHHHHHhCcCHHHHHHHHHHHHhCCceEec
Confidence 35666643 23 799999999999999999999999999999764
No 244
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=73.26 E-value=3.7 Score=29.86 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=26.9
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCC
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGL 115 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGl 115 (139)
+|...||+.++++-.-.-++|++|+++|+
T Consensus 179 ~t~~~iA~~lg~sr~tvsR~l~~L~~~gi 207 (237)
T 3fx3_A 179 YDKMLIAGRLGMKPESLSRAFSRLKAAGV 207 (237)
T ss_dssp SCTHHHHHHTTCCHHHHHHHHHHHGGGTE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCe
Confidence 56789999999999999999999999993
No 245
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=72.57 E-value=6.5 Score=27.53 Aligned_cols=43 Identities=7% Similarity=0.137 Sum_probs=32.7
Q ss_pred echHHHHhhhc------cchHHHHHHHHHHHHcCCeeEEee----cCceEEEe
Q psy1871 87 ITPSVVSERLK------VRGSLARKALEELLQKGLIKQVVK----HHAQVIYT 129 (139)
Q Consensus 87 ITPsvlseRlk------I~~SLARkaLreL~~kGlIk~Vsk----h~~q~IYt 129 (139)
.+.+.|.+++. |+-+.--.+|+.|++.|+|..... .++..+|.
T Consensus 28 ~~gyel~~~l~~~~~~~i~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~ 80 (117)
T 3elk_A 28 MHGYELQKSMFETTGQALPQGSIYILLKTMKERGFVISESSVNEKGQQLTVYH 80 (117)
T ss_dssp EEHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEE
Confidence 36777777776 788888999999999999987642 23455664
No 246
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=72.40 E-value=3.9 Score=32.44 Aligned_cols=43 Identities=12% Similarity=0.026 Sum_probs=36.1
Q ss_pred HHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 72 ASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 72 ~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
.++|.|.. .=+|...||+++++.-.+.++.||.|...|++...
T Consensus 55 gif~~L~~-----~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~ 97 (359)
T 1x19_A 55 DLFSHMAE-----GPKDLATLAADTGSVPPRLEMLLETLRQMRVINLE 97 (359)
T ss_dssp THHHHHTT-----CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CcHHHHcC-----CCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEee
Confidence 44555543 23799999999999999999999999999999874
No 247
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=72.37 E-value=4.3 Score=32.01 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=36.4
Q ss_pred HHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 72 ASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 72 ~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
.+++.|. +-| +|+..||+++++.-++.++.||.|...|++...
T Consensus 43 ~i~~~l~-~~~----~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~ 85 (360)
T 1tw3_A 43 RLVDHIL-AGA----RTVKALAARTDTRPEALLRLIRHLVAIGLLEED 85 (360)
T ss_dssp THHHHHH-TTC----CBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHh-CCC----CCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEec
Confidence 3566663 333 699999999999999999999999999999875
No 248
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=71.94 E-value=3.6 Score=33.10 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=32.5
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
-+|...||+++++.-...+++||.|..-|++....
T Consensus 71 ~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~~ 105 (369)
T 3gwz_A 71 PRTATALAEATGAHEQTLRRLLRLLATVGVFDDLG 105 (369)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEECS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEeC
Confidence 48999999999999999999999999999998754
No 249
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=71.80 E-value=4.4 Score=29.87 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=30.1
Q ss_pred echHHHHhhh--------ccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 87 ITPSVVSERL--------KVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 87 ITPsvlseRl--------kI~~SLARkaLreL~~kGlIk~Vs 120 (139)
.|+|.|++++ +|+-+--...|+.|++.|+|....
T Consensus 16 ~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~ 57 (179)
T 1yg2_A 16 ATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVL 57 (179)
T ss_dssp BCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEe
Confidence 5889999988 798999999999999999998753
No 250
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=70.82 E-value=3.8 Score=32.90 Aligned_cols=43 Identities=23% Similarity=0.108 Sum_probs=36.1
Q ss_pred HHHHHHHh-hCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 72 ASYDKLLK-EVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 72 ~tydKl~K-EVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
.++|-|.. +- =+|...||+++++.-...+++||.|..-|++..
T Consensus 39 gifd~L~~~~~----~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~ 82 (363)
T 3dp7_A 39 GIFQLLSGKRE----GYTLQEISGRTGLTRYAAQVLLEASLTIGTILL 82 (363)
T ss_dssp THHHHHHTCTT----CBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE
T ss_pred CHHHHHHhcCC----CCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEe
Confidence 45566654 22 379999999999999999999999999999976
No 251
>2xzm_T RPS19E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_T
Probab=70.37 E-value=3.6 Score=31.72 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=18.8
Q ss_pred chHHHHHHHHHHHHcCCeeE
Q psy1871 99 RGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 99 ~~SLARkaLreL~~kGlIk~ 118 (139)
++|++|.+|+.||+-|+|..
T Consensus 100 sg~iiR~~LQqLE~~g~Vek 119 (155)
T 2xzm_T 100 HGKILRWALKSLEDLKIIRK 119 (155)
T ss_dssp CHHHHHHHHHHHHHTTSEEE
T ss_pred CcHHHHHHHHHHHHCCCEee
Confidence 49999999999999999987
No 252
>3e0j_B DNA polymerase subunit delta-3; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=70.29 E-value=4.4 Score=30.51 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=38.6
Q ss_pred eCHHHHHHHHhhCCCC-eeechHHHHhhhccchHHHHHHHHHHHHc
Q psy1871 69 FDKASYDKLLKEVPAY-KLITPSVVSERLKVRGSLARKALEELLQK 113 (139)
Q Consensus 69 ~Dk~tydKl~KEVpk~-KlITPsvlseRlkI~~SLARkaLreL~~k 113 (139)
.|+..+|-|..-|-.. ++||=--||..|+|....|++.|.++.++
T Consensus 2 ~d~~yle~L~~~V~de~k~VTYr~LSr~l~VhvN~AK~mL~ef~~~ 47 (144)
T 3e0j_B 2 ADQLYLENIDEFVTDQNKIVTYKWLSYTLGVHVNQAKQMLYDYVER 47 (144)
T ss_dssp CHHHHHHHHHHHHTTTCCCEEHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCceEEHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 3666777777777664 99999999999999999999999999874
No 253
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=70.00 E-value=5.5 Score=31.68 Aligned_cols=45 Identities=20% Similarity=0.263 Sum_probs=36.5
Q ss_pred HHHHHHHhhCCCCeeechHHHHhhhcc---chHHHHHHHHHHHHcCCeeEE
Q psy1871 72 ASYDKLLKEVPAYKLITPSVVSERLKV---RGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 72 ~tydKl~KEVpk~KlITPsvlseRlkI---~~SLARkaLreL~~kGlIk~V 119 (139)
.++|-|...- .=+|...||+++++ +-.+.++.||.|...|++...
T Consensus 34 gif~~L~~~~---~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~ 81 (358)
T 1zg3_A 34 GIADAIHNHG---KPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKT 81 (358)
T ss_dssp THHHHHHHHT---SCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEE
T ss_pred ChHhHHhhcC---CCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEe
Confidence 4566665531 12799999999999 688999999999999999875
No 254
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=69.26 E-value=7 Score=32.00 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=31.1
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
.++|...||++|+|+-+--++.|+.|++.|+...
T Consensus 18 ~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~i~ 51 (323)
T 3rkx_A 18 NYISGQSIAESLNISRTAVKKVIDQLKLEGCKID 51 (323)
T ss_dssp SCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEE
T ss_pred CccCHHHHHHHHCCCHHHHHHHHHHHHhcCCeEE
Confidence 5789999999999999999999999999999443
No 255
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=69.03 E-value=4.7 Score=32.31 Aligned_cols=47 Identities=15% Similarity=0.297 Sum_probs=36.4
Q ss_pred HHHHHHHhhC-CCCeeechHHHHhhhcc------chHHHHHHHHHHHHcCCeeEE
Q psy1871 72 ASYDKLLKEV-PAYKLITPSVVSERLKV------RGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 72 ~tydKl~KEV-pk~KlITPsvlseRlkI------~~SLARkaLreL~~kGlIk~V 119 (139)
.++|-|...- |.. -+|+..||+++++ .-.+.++.||.|..-|++...
T Consensus 48 gif~~L~~~g~pg~-~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 101 (372)
T 1fp1_D 48 NLFEIIAKATPPGA-FMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTST 101 (372)
T ss_dssp THHHHHHTCSSTTC-CBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred ChHHHHHhcCCCCC-CcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEec
Confidence 3455555432 311 2599999999999 788999999999999999875
No 256
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=68.90 E-value=3.6 Score=29.53 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=32.0
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeEEee-cCceEEEecc
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQVVK-HHAQVIYTRT 131 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vsk-h~~q~IYtra 131 (139)
.|...||+.++|+.+ .||.-++.|+|.++.+ .++.+.|+..
T Consensus 1 ~~I~e~A~~~gvs~~----tLR~ye~~Gll~p~~r~~~g~R~Y~~~ 42 (135)
T 1q06_A 1 MNISDVAKITGLTSK----AIRFYEEKGLVTPPMRSENGYRTYTQQ 42 (135)
T ss_dssp CCHHHHHHHHTCCHH----HHHHHHHTTCSCCCEECTTSCEECCHH
T ss_pred CCHHHHHHHHCcCHH----HHHHHHHCCCCCCCccCCCCCeeeCHH
Confidence 367899999998765 5889999999998743 4667888753
No 257
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=68.86 E-value=3.8 Score=32.51 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=35.0
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe-ecCceEEEecc
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV-KHHAQVIYTRT 131 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs-kh~~q~IYtra 131 (139)
..|...||+.++|+.. .||.-++.|||.+.. ..++.+.|+..
T Consensus 3 ~~tI~evA~~~gvs~~----TLRyYe~~GLL~p~~~~~~GyR~Y~~~ 45 (249)
T 3qao_A 3 AMQIKELAELTGVSVR----TLHHYDKIGLLVPQKDDWNGYRIYSEK 45 (249)
T ss_dssp CBCHHHHHHHHCCCHH----HHHHHHHTTSSCCEECTTTCCEEBCHH
T ss_pred CCCHHHHHHHHCcCHH----HHHHHHHCCCCCCceECCCCCeeeCHH
Confidence 5789999999998765 589999999999986 46677888753
No 258
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=67.95 E-value=6.5 Score=31.16 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=36.1
Q ss_pred HHHHHHHhhCCCCeeechHHHHhhhcc---chHHHHHHHHHHHHcCCeeEE
Q psy1871 72 ASYDKLLKEVPAYKLITPSVVSERLKV---RGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 72 ~tydKl~KEVpk~KlITPsvlseRlkI---~~SLARkaLreL~~kGlIk~V 119 (139)
.++|-|...- .=+|+..||+++++ +-.+.++.||.|...|++...
T Consensus 40 gif~~L~~~~---~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 87 (352)
T 1fp2_A 40 NIPNIIQNHG---KPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEII 87 (352)
T ss_dssp THHHHHHHHT---SCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred ChhhhhhhcC---CCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEe
Confidence 3456665431 12799999999999 588999999999999999875
No 259
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=67.85 E-value=2.2 Score=23.40 Aligned_cols=28 Identities=14% Similarity=0.207 Sum_probs=24.3
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcC
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKG 114 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kG 114 (139)
+|...||+.|+|+-+..++.|+...+.|
T Consensus 22 ~s~~~IA~~lgis~~Tv~~~~~~~~~~g 49 (51)
T 1tc3_C 22 VSLHEMSRKISRSRHCIRVYLKDPVSYG 49 (51)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHCSTTTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHhhHHhcC
Confidence 4889999999999999999988776665
No 260
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=66.29 E-value=11 Score=25.99 Aligned_cols=40 Identities=8% Similarity=0.193 Sum_probs=30.4
Q ss_pred HHHHhhh--ccchHHHHHHHHHHHHcCCeeEEeecCceEEEec
Q psy1871 90 SVVSERL--KVRGSLARKALEELLQKGLIKQVVKHHAQVIYTR 130 (139)
Q Consensus 90 svlseRl--kI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtr 130 (139)
..|.+++ .++-+.--.+|+.|+++|+|.... .++..+|.=
T Consensus 32 ~ei~~~~~~~is~GtlYp~L~rLe~~GlI~~~~-~~~rk~Y~i 73 (99)
T 2co5_A 32 SEILKRFDIDISDGVLYPLIDSLIDDKILREEE-APDGKVLFL 73 (99)
T ss_dssp HHHHHHHCCBCCHHHHHHHHHHHHHTTSEEEEC-CTTSCEEEE
T ss_pred HHHHHHhCCCCCCCcHHHHHHHHHHCCCEEEee-CCCcEEEEE
Confidence 4566666 578788889999999999998876 455556653
No 261
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=65.80 E-value=7.5 Score=26.91 Aligned_cols=39 Identities=21% Similarity=0.416 Sum_probs=33.6
Q ss_pred HHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEe
Q psy1871 90 SVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYT 129 (139)
Q Consensus 90 svlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYt 129 (139)
..++.||..+.++-++.|+.|-+++.|.....+ ...+|.
T Consensus 49 ~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~-~~y~Yl 87 (88)
T 3o2p_E 49 AQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG-ESYAYL 87 (88)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTS-SEEEEC
T ss_pred HHHhccCCCCHHHHHHHHHHHHhhhHHhcCCCC-CeEEee
Confidence 457789999999999999999999999997655 667774
No 262
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=65.65 E-value=4.8 Score=30.61 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=34.1
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeec---CceEEEec
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKH---HAQVIYTR 130 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh---~~q~IYtr 130 (139)
.=||-+.|++-.+++ +..++++|.++|+|..+-+. .|-..|.-
T Consensus 107 qPiTR~eI~~irGv~---~~~~v~~L~e~glI~e~g~~~~~GRp~ly~t 152 (162)
T 1t6s_A 107 QPVTKGEIQQIRGAS---PDYSIDRLLARGLIEVRGRADSPGRPLQYGT 152 (162)
T ss_dssp CSEEHHHHHHHHTCC---CCSHHHHHHHTTSEEEEEECSSTTCCEEEEE
T ss_pred CCcCHHHHHHHHCCC---HHHHHHHHHHCCCEEEccccCCCCCCeEEEE
Confidence 458999999999998 67899999999999987532 34455653
No 263
>4hv0_A AVTR; ribbon-helix-helix, DNA, transcription, viral protein; 2.60A {Acidianus filamentous virus 6}
Probab=65.62 E-value=6.8 Score=28.61 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=29.9
Q ss_pred ceeeCHHHHHHHHhhCCCCeeechHHHHhhhccchH-HHHHHHHHHHH
Q psy1871 66 QVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGS-LARKALEELLQ 112 (139)
Q Consensus 66 ~Vl~Dk~tydKl~KEVpk~KlITPsvlseRlkI~~S-LARkaLreL~~ 112 (139)
.|+||+++|++|. .+|++=++++| ++|++|+|-..
T Consensus 2 NIvIEeslY~~Lk------------elAe~EGvSvSav~RkLL~EyL~ 37 (106)
T 4hv0_A 2 MVTVEEEVYEFLK------------KKAKEEGTSVPAVIRKILKEYFG 37 (106)
T ss_dssp CEEEEHHHHHHHH------------HHHHHTTSCHHHHHHHHHHHHHT
T ss_pred eEEeeHHHHHHHH------------HHHHHcCCCHHHHHHHHHHHHhc
Confidence 5899999999996 47899999886 89999988765
No 264
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=65.26 E-value=2.9 Score=30.49 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=32.2
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeEEee-cCceEEEec
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQVVK-HHAQVIYTR 130 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vsk-h~~q~IYtr 130 (139)
.|...||+.++|+.+ .||.-++.|+|.++.+ .++...|+.
T Consensus 3 ~~I~e~A~~~gvs~~----tLR~Ye~~GLl~p~~r~~~g~R~Y~~ 43 (142)
T 3gp4_A 3 LNIKEASEKSGVSAD----TIRYYERIGLIPPIHRNESGVRKFGA 43 (142)
T ss_dssp BCHHHHHHHHTSCHH----HHHHHHHHTSSCCCCBCTTSCBCBCH
T ss_pred CcHHHHHHHHCcCHH----HHHHHHHCCCCCCCcCCCCCCeeeCH
Confidence 588999999999765 5889999999999644 456778874
No 265
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=65.11 E-value=10 Score=30.44 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=41.1
Q ss_pred HHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEe
Q psy1871 72 ASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYT 129 (139)
Q Consensus 72 ~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYt 129 (139)
.++|-|... +. =+|...||+++++.-...++.||-|..-|++....... ...|.
T Consensus 32 glfd~L~~~-~~--p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~~~~-~~~y~ 85 (353)
T 4a6d_A 32 GVFDLLAEA-PG--PLDVAAVAAGVRASAHGTELLLDICVSLKLLKVETRGG-KAFYR 85 (353)
T ss_dssp THHHHHHHS-SS--CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETT-EEEEE
T ss_pred CHHHHHhcC-CC--CCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEeccCc-cceee
Confidence 456666543 22 37999999999999999999999999999998765433 33454
No 266
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=65.07 E-value=6.2 Score=31.90 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=36.0
Q ss_pred HHHHHHHhhCCCCeeechHHHHhhhcc--chH---HHHHHHHHHHHcCCeeEEe
Q psy1871 72 ASYDKLLKEVPAYKLITPSVVSERLKV--RGS---LARKALEELLQKGLIKQVV 120 (139)
Q Consensus 72 ~tydKl~KEVpk~KlITPsvlseRlkI--~~S---LARkaLreL~~kGlIk~Vs 120 (139)
.++|-|...- -.-+|+..||+++++ +-. +.+++||.|..-|++....
T Consensus 44 gifd~L~~~g--~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~~ 95 (364)
T 3p9c_A 44 GLLEILVAAG--GKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLV 95 (364)
T ss_dssp THHHHHHHTT--TCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEEE
T ss_pred ChHHHHhhcC--CCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEec
Confidence 3556665421 123799999999998 555 8999999999999998864
No 267
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=64.75 E-value=1.4 Score=32.06 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=0.0
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
-+|-..||+.++++-.-.-++|++|+++|+|..
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I~~ 196 (213)
T 1o5l_A 164 PVTLEELSRLFGCARPALSRVFQELEREGYIEK 196 (213)
T ss_dssp ---------------------------------
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCeEEE
Confidence 478999999999999999999999999999864
No 268
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=61.32 E-value=21 Score=25.33 Aligned_cols=43 Identities=12% Similarity=0.152 Sum_probs=32.9
Q ss_pred echHHHHhhh-----ccchHHHHHHHHHHHHcCCeeEEe---ecCceEEEe
Q psy1871 87 ITPSVVSERL-----KVRGSLARKALEELLQKGLIKQVV---KHHAQVIYT 129 (139)
Q Consensus 87 ITPsvlseRl-----kI~~SLARkaLreL~~kGlIk~Vs---kh~~q~IYt 129 (139)
.+.|.|..++ .|+-+.--.+|+.|+++|+|.... ..++..+|.
T Consensus 34 ~~GYei~~~l~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~ 84 (123)
T 3ri2_A 34 AYGYALVKSLADHGIPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYR 84 (123)
T ss_dssp EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEE
T ss_pred CCHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEE
Confidence 4677777774 889999999999999999998763 224455664
No 269
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=61.31 E-value=7.7 Score=30.45 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=52.3
Q ss_pred hhccceeeCHHHHHHHHhhCCC---CeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 62 KLNNQVLFDKASYDKLLKEVPA---YKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 62 Klnn~Vl~Dk~tydKl~KEVpk---~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
++..-++|+.+.|+++...+-. ..-||++.+=|.++++==.|-.+|+.|-+.|+.+.+-
T Consensus 189 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~it~a~~Rd~lg~SRK~aIplLE~~Dr~g~TrR~g 250 (258)
T 1lva_A 189 KINDEFYWHRQALGEAREVIKNLASTGPFGLAEARDALGSSRKYVLPLLEYLDQVKFTRRVG 250 (258)
T ss_dssp ESSSSBEEEHHHHHHHHHHHHHHHTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred EecCCeEEcHHHHHHHHHHHHHHHhcCCcCHHHHHHHhCCcHHHHHHHHHHHhhcCceeeeC
Confidence 3567789999999998877764 4779999999999999999999999999999999874
No 270
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=61.20 E-value=8.9 Score=28.59 Aligned_cols=54 Identities=17% Similarity=0.250 Sum_probs=40.0
Q ss_pred HHHHHhhCCCCeeechHHHHhhh-----ccchHHHHHHHHHHHHcCCeeEEeecCceEEEecc
Q psy1871 74 YDKLLKEVPAYKLITPSVVSERL-----KVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRT 131 (139)
Q Consensus 74 ydKl~KEVpk~KlITPsvlseRl-----kI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtra 131 (139)
.++|..-+....+.|...|++.| +|+-+--++-|++| |++|.-..+ ...+|.-.
T Consensus 7 ~~~I~~li~~~~~~tq~eL~~~L~~~G~~VtqaTisRDL~eL---~~vKv~~~~-g~~~Y~lp 65 (149)
T 1b4a_A 7 HIKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIKEM---QLVKVPMAN-GRYKYSLP 65 (149)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHT---TCEEEECSS-SCEEEECT
T ss_pred HHHHHHHHHHCCCccHHHHHHHHHHcCCCcCHHHHHHHHHHc---CCeEEECCC-CCEEEEeC
Confidence 45555556778899999999999 88888777666555 888876544 56788853
No 271
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=61.10 E-value=19 Score=27.09 Aligned_cols=36 Identities=14% Similarity=0.274 Sum_probs=32.8
Q ss_pred eeechHHHHhhhc-cchHHHHHHHHHHHHcCCeeEEe
Q psy1871 85 KLITPSVVSERLK-VRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 85 KlITPsvlseRlk-I~~SLARkaLreL~~kGlIk~Vs 120 (139)
...|+..|++.+. |+-+.-++-|+.|++.|+|..+.
T Consensus 44 ~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~ 80 (151)
T 3u1d_A 44 GVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKIP 80 (151)
T ss_dssp SCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEee
Confidence 4678899999999 99999999999999999999874
No 272
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=57.87 E-value=17 Score=29.53 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=32.0
Q ss_pred HHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEe
Q psy1871 91 VVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYT 129 (139)
Q Consensus 91 vlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYt 129 (139)
.+.+.|+|+-+..|.+|.-|.++|.|.....++ ...|.
T Consensus 50 ~l~~~~Gi~~~avR~Al~RL~~~G~l~~~~~Gr-~~~Y~ 87 (266)
T 3l09_A 50 SFVERMGLQPQAMRVALHRLKRDGWVESRRLGR-VGFHR 87 (266)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETT-EEEEE
T ss_pred HHHHHcCCCchHHHHHHHHHHHCCCeeeeecCC-cceEE
Confidence 488999999999999999999999998875444 44665
No 273
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=57.83 E-value=22 Score=24.60 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=21.8
Q ss_pred hccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 96 LKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 96 lkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
++|+-+.--.+|+.|++.|+|....
T Consensus 52 ~~is~gtLY~~L~rLe~~GlI~~~~ 76 (115)
T 2dql_A 52 YRLSDTVLYSAIKFLEDNRAITGYW 76 (115)
T ss_dssp EECCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEe
Confidence 3688888899999999999998763
No 274
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=57.79 E-value=11 Score=26.15 Aligned_cols=40 Identities=13% Similarity=0.263 Sum_probs=34.6
Q ss_pred HHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEe
Q psy1871 90 SVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYT 129 (139)
Q Consensus 90 svlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYt 129 (139)
..|+.||..+.++-++.|..|-+++.|.....++...+|.
T Consensus 52 ~ql~~rF~p~~~~IKk~IE~LIereYleR~~~d~~~y~Y~ 91 (92)
T 1iuy_A 52 QQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYV 91 (92)
T ss_dssp HHTCSSCCCCHHHHHHHHHHHHHTTSEEECSSCSSEEEEC
T ss_pred HHHcCCCCCCHHHHHHHHHHHhhhhhhhcCCCCCCeeEec
Confidence 4455689999999999999999999999987777788885
No 275
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=57.27 E-value=13 Score=29.21 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=39.3
Q ss_pred HHHHHHhhCC--CCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeec
Q psy1871 73 SYDKLLKEVP--AYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKH 122 (139)
Q Consensus 73 tydKl~KEVp--k~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh 122 (139)
..++|....- .+.--++..|++.+++.-..++.+|+.|...|.|..|...
T Consensus 142 ~~~~i~~~~~~~g~~pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv~l~~~ 193 (258)
T 1lva_A 142 LLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDE 193 (258)
T ss_dssp HHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSS
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 3555555442 2334577899999999999999999999999999998754
No 276
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=57.23 E-value=30 Score=25.03 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=27.3
Q ss_pred hccchHHHHHHHHHHHHcCCeeEEee-----cCceEEEeccC
Q psy1871 96 LKVRGSLARKALEELLQKGLIKQVVK-----HHAQVIYTRTT 132 (139)
Q Consensus 96 lkI~~SLARkaLreL~~kGlIk~Vsk-----h~~q~IYtra~ 132 (139)
++|+-+.-..+|+.|+++|+|..... .++..+|.=..
T Consensus 64 ~~is~gtLYp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~LT~ 105 (138)
T 2e1n_A 64 YRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQ 105 (138)
T ss_dssp EECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESC
T ss_pred CCCCccHHHHHHHHHHHCCCEEEEeecccCCCCCcEEEEECH
Confidence 46898999999999999999988632 23445565433
No 277
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=56.90 E-value=9.9 Score=30.40 Aligned_cols=33 Identities=30% Similarity=0.337 Sum_probs=29.4
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs 120 (139)
.=||-+.|++..+++. -.++++|.++|+|..+-
T Consensus 113 QPITR~eI~~irGv~~---~~~v~~Lle~gLI~e~G 145 (219)
T 2z99_A 113 QPVTRARVSAVRGVNV---DAVMRTLLARGLITEVG 145 (219)
T ss_dssp CSEEHHHHHHHHTSCC---HHHHHHHHHTTSEEEEE
T ss_pred CCcCHHHHHHHHCCCH---HHHHHHHHHCCCEEEcc
Confidence 4489999999999997 47999999999999985
No 278
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=56.42 E-value=10 Score=29.40 Aligned_cols=49 Identities=20% Similarity=0.214 Sum_probs=38.6
Q ss_pred HHHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHH-HHHHcCCeeEEee
Q psy1871 71 KASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALE-ELLQKGLIKQVVK 121 (139)
Q Consensus 71 k~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLr-eL~~kGlIk~Vsk 121 (139)
...+..+... .-.-++...+|+.++|.-+...+.|+ .|.+.|+|....+
T Consensus 266 ~~~l~~l~~~--~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~~ 315 (338)
T 3pfi_A 266 LRYLELLTAA--KQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAK 315 (338)
T ss_dssp HHHHHHHHHS--CSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHh--cCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCCC
Confidence 3455555554 45567899999999999999998888 9999999987653
No 279
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=56.42 E-value=10 Score=27.87 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=29.8
Q ss_pred eeechHHHHhhh-------ccchHHHHHHHHHHHHcCCeeEEeecCceEEEe
Q psy1871 85 KLITPSVVSERL-------KVRGSLARKALEELLQKGLIKQVVKHHAQVIYT 129 (139)
Q Consensus 85 KlITPsvlseRl-------kI~~SLARkaLreL~~kGlIk~Vskh~~q~IYt 129 (139)
.-+|...|-+++ +|+.+---+.|+.|++.|+|..+.-.+...-|-
T Consensus 47 ~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~~~~~~~~Y~ 98 (162)
T 4ets_A 47 THYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYE 98 (162)
T ss_dssp SCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC-----CCEE
T ss_pred CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCceEEE
Confidence 456777776665 356667789999999999999985444333354
No 280
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=55.41 E-value=6.2 Score=35.03 Aligned_cols=43 Identities=33% Similarity=0.237 Sum_probs=35.5
Q ss_pred HHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHH-----cCCeeEE
Q psy1871 77 LLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQ-----KGLIKQV 119 (139)
Q Consensus 77 l~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~-----kGlIk~V 119 (139)
|+.-+-...-||...|++.+++.-.-++++|+.|.+ .|+|...
T Consensus 435 iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~ 482 (583)
T 3lmm_A 435 VLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAH 482 (583)
T ss_dssp HHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEE
T ss_pred HHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEe
Confidence 433333445699999999999999999999999999 7898875
No 281
>1zel_A Hypothetical protein RV2827C; winged-helix, helix-turn-HELI rickshaw, structural genomics, PSI; 1.93A {Mycobacterium tuberculosis} SCOP: a.4.5.83 d.377.1.1
Probab=55.40 E-value=11 Score=31.74 Aligned_cols=56 Identities=16% Similarity=0.254 Sum_probs=44.1
Q ss_pred HHHHHHHhhCCCCeeechHHHHhhh---ccchHHHHHHHHHHHHcCCeeEEeecCceEEEecc
Q psy1871 72 ASYDKLLKEVPAYKLITPSVVSERL---KVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRT 131 (139)
Q Consensus 72 ~tydKl~KEVpk~KlITPsvlseRl---kI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtra 131 (139)
+..+.|+.+-+- ++|-.++.+.+ +++-. ++.+|+.|.++|.|. .+-+|...+.++.
T Consensus 20 ~yi~~L~a~Gr~--~FT~~E~~~~l~~~g~~~~-~~~AlrRL~kkG~L~-~~P~rGfyvIVPP 78 (298)
T 1zel_A 20 RVVSGLARDRPV--VVTKEDLTQRLTEAGCGRD-PDSAIRELRRIGWLV-QLPVKGTWAFIPP 78 (298)
T ss_dssp HHHHHHHHHCCS--SEEHHHHHHHHHHTTCCCC-HHHHHHHHHHHTSEE-ECSSTTEEEECCT
T ss_pred HHHHHHHhcCCE--EeeHHHHHHHHhhcCCChH-HHHHHHHHHhCCcee-ccCcCceEEEeCc
Confidence 445666665544 67889999999 88888 999999999999997 5667777777765
No 282
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor}
Probab=55.26 E-value=4.9 Score=31.66 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=26.6
Q ss_pred chHHHHhhhccchHHHHHHHHHHHHcCCeeEEee-cCceEEEecc
Q psy1871 88 TPSVVSERLKVRGSLARKALEELLQKGLIKQVVK-HHAQVIYTRT 131 (139)
Q Consensus 88 TPsvlseRlkI~~SLARkaLreL~~kGlIk~Vsk-h~~q~IYtra 131 (139)
|...+|+.++|+.+ .||..+++|+|.+..+ .++...|+..
T Consensus 2 ~IgevA~~~Gvs~~----TLRyYE~~GLl~p~~R~~~gyR~Y~~~ 42 (222)
T 2dg6_A 2 RLADLSKRSGVSTA----TIKYYLREGLLPPGRQVNATTAEYDED 42 (222)
T ss_dssp CHHHHHHHHTCCHH----HHHHHHHHTSSCCC---------CCHH
T ss_pred CHHHHHHHHCcCHH----HHHHHHHCCCCCCCeeCCCCceeeCHH
Confidence 67889999988765 5889999999998654 3567788753
No 283
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=54.65 E-value=25 Score=25.92 Aligned_cols=48 Identities=17% Similarity=0.217 Sum_probs=33.5
Q ss_pred chHHHHhhh-------ccchHHHHHHHHHHHHcCCeeEEee-----cCceEEEeccCCCC
Q psy1871 88 TPSVVSERL-------KVRGSLARKALEELLQKGLIKQVVK-----HHAQVIYTRTTKGD 135 (139)
Q Consensus 88 TPsvlseRl-------kI~~SLARkaLreL~~kGlIk~Vsk-----h~~q~IYtra~k~~ 135 (139)
+.|.|...+ +|+-+.-..+|+.|+++|+|..... .++..+|.=...+.
T Consensus 59 ~GYeI~k~l~~~~~~~~is~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr 118 (148)
T 2zfw_A 59 YGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQAND 118 (148)
T ss_dssp EHHHHHHHHHHHCTTEECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSC
T ss_pred cHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHHH
Confidence 455555555 6888888999999999999988632 23455666444443
No 284
>3v4g_A Arginine repressor; vibrio vulnificus CMCP6, virulence, type secretion system, center for structural genomics of infecti diseases, csgid; 1.60A {Vibrio vulnificus} PDB: 1aoy_A
Probab=52.46 E-value=22 Score=27.69 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=32.4
Q ss_pred hccceeeCHH-HHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEecc
Q psy1871 63 LNNQVLFDKA-SYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRT 131 (139)
Q Consensus 63 lnn~Vl~Dk~-tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtra 131 (139)
+++..+=.++ +.+.|.++ .+.+||.++|| |+|.+=|++|.=.. ....+|.-.
T Consensus 42 I~~~~I~TQeEL~~~L~~~--Gi~viTQATvS--------------RDIkELglvKv~~~-~G~~~Y~lp 94 (180)
T 3v4g_A 42 LKEERFGSQGEIVEALKQE--GFENINQSKVS--------------RMLTKFGAVRTRNA-KMEMVYCLP 94 (180)
T ss_dssp HHHTCCCSHHHHHHHHHHT--TCTTCCHHHHH--------------HHHHHTTCEEEECT-TSCEEEECC
T ss_pred HhhCCcCCHHHHHHHHHHC--CCcccCHHHHH--------------HHHHHcCCEEeeCC-CCCEEEEeC
Confidence 3333333443 33444444 67777777777 89999999996544 345788743
No 285
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=51.75 E-value=11 Score=28.73 Aligned_cols=34 Identities=24% Similarity=0.165 Sum_probs=28.4
Q ss_pred eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeec
Q psy1871 85 KLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKH 122 (139)
Q Consensus 85 KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh 122 (139)
.++|...+||.|+|+.+-.++ |...|-|.-|-..
T Consensus 30 ~~LTv~EVAe~LgVs~srV~~----LIr~G~L~AVr~G 63 (148)
T 2kfs_A 30 PTYDLPRVAELLGVPVSKVAQ----QLREGHLVAVRRA 63 (148)
T ss_dssp CEEEHHHHHHHHTCCHHHHHH----HHHTTSCCCEEET
T ss_pred ceEcHHHHHHHhCCCHHHHHH----HHHCCCceEEEEC
Confidence 799999999999999887655 5667888887665
No 286
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=51.20 E-value=23 Score=26.32 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=42.0
Q ss_pred HHHHHHHhhCCCCeeechHHHHhhhc-cchHHHHHHHHHHHHcCCeeEEeec----CceEEEec
Q psy1871 72 ASYDKLLKEVPAYKLITPSVVSERLK-VRGSLARKALEELLQKGLIKQVVKH----HAQVIYTR 130 (139)
Q Consensus 72 ~tydKl~KEVpk~KlITPsvlseRlk-I~~SLARkaLreL~~kGlIk~Vskh----~~q~IYtr 130 (139)
++==+|+...-.- =.|+..|+++|+ +..|..-.=|+.|.+-|||..+-.. .+...|..
T Consensus 23 P~Rl~il~~L~~~-~~~~~~l~~~l~~~~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~ 85 (182)
T 4g6q_A 23 PLRWRITQLLIGR-SLTTRELAELLPDVATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTL 85 (182)
T ss_dssp HHHHHHHHHTTTS-CEEHHHHHHHCTTBCHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEe
Confidence 3444566555443 369999999996 9999888899999999999877432 23455653
No 287
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=50.49 E-value=3.3 Score=37.25 Aligned_cols=60 Identities=18% Similarity=0.295 Sum_probs=0.0
Q ss_pred CHHHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEe
Q psy1871 70 DKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYT 129 (139)
Q Consensus 70 Dk~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYt 129 (139)
+.++|+....=|-...-.+.|.|=.||+|...-|-+++.+||+.|+|-+-..+..-.|+.
T Consensus 501 ~d~l~~~a~~~v~~~~~~s~s~lqr~~~igynraar~~~~me~~giv~~~~~~~~r~vl~ 560 (574)
T 2iut_A 501 DDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPMNTNGSREVIA 560 (574)
T ss_dssp ------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHhcCCcCHHHHHHHhccChHHHHHHHHHHHHCCCCCCccCCCCceEec
Confidence 356777777777777888999999999999999999999999999999876555444554
No 288
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=49.39 E-value=55 Score=21.88 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=41.1
Q ss_pred CCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeE-EeecCceEEEecc
Q psy1871 83 AYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQ-VVKHHAQVIYTRT 131 (139)
Q Consensus 83 k~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~-Vskh~~q~IYtra 131 (139)
-|.-||...||+.|++...-+...|..|...|-|.- +.+-....+|.+.
T Consensus 27 ~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~ 76 (84)
T 1ufm_A 27 LYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETR 76 (84)
T ss_dssp SCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCS
T ss_pred hcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCc
Confidence 389999999999999999999999999999998875 4555666666553
No 289
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=48.64 E-value=3.7 Score=36.17 Aligned_cols=59 Identities=12% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEe
Q psy1871 71 KASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYT 129 (139)
Q Consensus 71 k~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYt 129 (139)
.++|+....=|-...-.+.|.|=.||+|...-|-+++.+||+.|+|-+-..+..-.|+.
T Consensus 449 d~l~~~a~~~v~~~~~~s~s~~qr~~~igy~ra~~~~~~~e~~g~v~~~~~~~~r~vl~ 507 (512)
T 2ius_A 449 DPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLA 507 (512)
T ss_dssp -----------------------------------------------------------
T ss_pred cHHHHHHHHHHHhcCCcCHHHHHHHhccChHHHHHHHHHHHHCCCCCCCCCCCCceEcc
Confidence 45666666666677888999999999999999999999999999998876555444554
No 290
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=47.90 E-value=23 Score=27.22 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=33.8
Q ss_pred echHHHHhhh--------ccchHHHHHHHHHHHHcCCeeEEee---cC-ceEEEec
Q psy1871 87 ITPSVVSERL--------KVRGSLARKALEELLQKGLIKQVVK---HH-AQVIYTR 130 (139)
Q Consensus 87 ITPsvlseRl--------kI~~SLARkaLreL~~kGlIk~Vsk---h~-~q~IYtr 130 (139)
.+.|.|..++ +|+-+.--.+|+.|++.|+|..... ++ .-.+|.=
T Consensus 50 ~~GYeL~~~l~~~~~~~~~~s~g~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~i 105 (204)
T 3l9f_A 50 RSGYEINDILQNQLSYFYDGTYGMIYPTLRKLEKDGKITKEVVIQDGRPNKNIYAI 105 (204)
T ss_dssp EEHHHHHHHHHHTSTTTEECCTTCHHHHHHHHHHTTSEEEEEECCTTSCCEEEEEE
T ss_pred CCHHHHHHHHHHHhCCccCCCcchHHHHHHHHHHCCCeEEEeeccCCCCCceEEEE
Confidence 5788888887 6888889999999999999987542 22 3456653
No 291
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=46.37 E-value=19 Score=29.04 Aligned_cols=47 Identities=15% Similarity=0.290 Sum_probs=35.0
Q ss_pred HHHHHHHhh-CCCCeeechHHHHhhhcc-chH---HHHHHHHHHHHcCCeeEE
Q psy1871 72 ASYDKLLKE-VPAYKLITPSVVSERLKV-RGS---LARKALEELLQKGLIKQV 119 (139)
Q Consensus 72 ~tydKl~KE-Vpk~KlITPsvlseRlkI-~~S---LARkaLreL~~kGlIk~V 119 (139)
.++|-|... -|. .-+|+..||+++++ +.. +-+++||.|..-|++...
T Consensus 45 glfd~L~~~~gp~-~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 96 (368)
T 3reo_A 45 DVLEIMAKSVPPS-GYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYT 96 (368)
T ss_dssp THHHHHHHHCCTT-CCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred CchhHHhhcCCCC-CCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEEe
Confidence 356666553 222 23699999999984 443 889999999999999886
No 292
>1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A
Probab=45.55 E-value=50 Score=28.97 Aligned_cols=61 Identities=7% Similarity=-0.076 Sum_probs=47.2
Q ss_pred CHHHHHHHHhhC----CCC-eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEec
Q psy1871 70 DKASYDKLLKEV----PAY-KLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTR 130 (139)
Q Consensus 70 Dk~tydKl~KEV----pk~-KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtr 130 (139)
+.+.++.++.|| |+| +++||.++.++|.=.-+-...+..-|++.|+-..-..+.+..|-..
T Consensus 50 n~~~l~~~l~~vs~p~~~ygk~Lt~~e~~~~f~ps~~~v~~V~~wL~~~G~~~~~~~~~~~~i~~~ 115 (552)
T 1t1e_A 50 RGDELEAHVERQAALAPHARVHLEREAFAASHGASLDDFAEIRKFAEAHGLTLDRAHVAAGTAVLS 115 (552)
T ss_dssp THHHHHHHHHHHTTSCTTSCCCCCHHHHHHHHSCCHHHHHHHHHHHHHTTCEEEEEETTTTEEEEE
T ss_pred CHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCceeEEecCCCEEEEE
Confidence 556677777665 455 8999999999999999999999999999999655444455555444
No 293
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=45.07 E-value=44 Score=19.45 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=27.4
Q ss_pred ccceeeCHHHHHHHHhhCCCCeeechHHHHhhhccchH-HHHHHHHHHHH
Q psy1871 64 NNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGS-LARKALEELLQ 112 (139)
Q Consensus 64 nn~Vl~Dk~tydKl~KEVpk~KlITPsvlseRlkI~~S-LARkaLreL~~ 112 (139)
.-.|-+|++++++|. .+|++.+++.| +.|.+|+++.+
T Consensus 11 ~i~vrl~~el~~~l~------------~~a~~~g~s~s~~ir~ai~~~l~ 48 (55)
T 2k9i_A 11 KLGVYIPQEWHDRLM------------EIAKEKNLTLSDVCRLAIKEYLD 48 (55)
T ss_dssp EEEEEECHHHHHHHH------------HHHHHHTCCHHHHHHHHHHHHHH
T ss_pred eEEEEcCHHHHHHHH------------HHHHHhCCCHHHHHHHHHHHHHH
Confidence 346788999999995 67888888765 55677776654
No 294
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=45.03 E-value=26 Score=25.64 Aligned_cols=31 Identities=32% Similarity=0.483 Sum_probs=27.4
Q ss_pred chHHHHhhhccc-hHHHHHHHHHHHHcCCeeE
Q psy1871 88 TPSVVSERLKVR-GSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 88 TPsvlseRlkI~-~SLARkaLreL~~kGlIk~ 118 (139)
|...||++++|+ -|-....++.|++.|.|..
T Consensus 27 s~~elA~~lgiss~~tv~~~~~~l~~~~~l~~ 58 (202)
T 1jhf_A 27 TRAEIAQRLGFRSPNAAEEHLKALARKGVIEI 58 (202)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHTTSEEE
T ss_pred cHHHHHHHhCCCChHHHHHHHHHHHHCCCcee
Confidence 899999999998 7777888999999998764
No 295
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=43.14 E-value=24 Score=22.92 Aligned_cols=47 Identities=2% Similarity=-0.076 Sum_probs=33.1
Q ss_pred eCHHHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCC
Q psy1871 69 FDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGL 115 (139)
Q Consensus 69 ~Dk~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGl 115 (139)
++.+.-..+...+-...=.|...||.+|+|+-+.-++-++.....|.
T Consensus 6 ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~~~~g~ 52 (97)
T 2jn6_A 6 YSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYGSNHN 52 (97)
T ss_dssp CCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHCCCST
T ss_pred CCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHHhhcCc
Confidence 34444455555553221258899999999999999999988877665
No 296
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=43.10 E-value=22 Score=22.29 Aligned_cols=38 Identities=13% Similarity=0.110 Sum_probs=26.6
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEE-eecCce
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQV-VKHHAQ 125 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~V-skh~~q 125 (139)
+||..++|+++.. ...+.-|+.+.+.|.|.+= .++.+.
T Consensus 2 lltl~EwA~~~~~--~~s~~Tl~r~ar~G~I~Pp~~KvGr~ 40 (52)
T 2og0_A 2 YLTLQEWNARQRR--PRSLETVRRWVRESRIFPPPVKDGRE 40 (52)
T ss_dssp EEEHHHHHHTSSS--CCCHHHHHHHHHTTCEESCCEEETTE
T ss_pred eeeHHHHHHHhcC--CCCHHHHHHHHHCCCCCCcccccCCE
Confidence 6899999999844 4555667778889999332 344443
No 297
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=41.29 E-value=5.6 Score=31.71 Aligned_cols=39 Identities=21% Similarity=0.212 Sum_probs=0.0
Q ss_pred hhCCCCeeechHHHHhhh-ccchHHHHHHHHHHHHcCCee
Q psy1871 79 KEVPAYKLITPSVVSERL-KVRGSLARKALEELLQKGLIK 117 (139)
Q Consensus 79 KEVpk~KlITPsvlseRl-kI~~SLARkaLreL~~kGlIk 117 (139)
++-+...=|....|+++| ++..+--|.+|++|.+.|.|=
T Consensus 217 ~~~~~~~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IY 256 (270)
T 2pi2_A 217 KACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIY 256 (270)
T ss_dssp ----------------------------------------
T ss_pred HhCCCccCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEe
Confidence 343444667778999999 699999999999999999983
No 298
>3qyf_A Crispr-associated protein; helix-turn-helix, antiviral protein, viral resistance, nucle binding domain; 1.90A {Sulfolobus solfataricus}
Probab=38.94 E-value=14 Score=31.27 Aligned_cols=45 Identities=13% Similarity=0.089 Sum_probs=31.7
Q ss_pred eeeCHHHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 67 VLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 67 Vl~Dk~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
+-||.+.+ .+++|+-..-.-+|..+|++++|. +++|++.|+|...
T Consensus 207 i~ld~~~~-~~lk~~~~~g~~~~~~la~~lgi~-------v~~L~~~gli~~~ 251 (324)
T 3qyf_A 207 ITIRPKYL-DWLIRFAISGYTLSEKRAEELGIP-------VRLLEAKMLVERK 251 (324)
T ss_dssp EEECHHHH-HHHHHHHHHCSEEEHHHHHHTTCC-------HHHHHHTTSEEEE
T ss_pred cccCHHHH-HHHHHHHhcCCCCHHHHHHHhCCC-------HHHHHHCCCeEec
Confidence 34555444 445566522355778999999999 5699999999765
No 299
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.77 E-value=47 Score=27.51 Aligned_cols=47 Identities=13% Similarity=0.249 Sum_probs=39.7
Q ss_pred CeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEec
Q psy1871 84 YKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTR 130 (139)
Q Consensus 84 ~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtr 130 (139)
|+-||-..+|+.|+++..-+..-|..|-..|.|.--.-.....|+++
T Consensus 345 Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~ 391 (429)
T 4b4t_R 345 YKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETN 391 (429)
T ss_dssp CSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEEC
T ss_pred hceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEEC
Confidence 79999999999999999999999999999999987543344456664
No 300
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=38.75 E-value=38 Score=25.49 Aligned_cols=33 Identities=21% Similarity=0.146 Sum_probs=28.1
Q ss_pred echHHHHhhh-----ccchHHHHHHHHHHHHcCCeeEE
Q psy1871 87 ITPSVVSERL-----KVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 87 ITPsvlseRl-----kI~~SLARkaLreL~~kGlIk~V 119 (139)
+|++.|++.+ ++..+-+..+|+.|++.|+|...
T Consensus 296 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 333 (350)
T 2qen_A 296 NRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE 333 (350)
T ss_dssp CSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec
Confidence 4778888777 78888888999999999999765
No 301
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=37.68 E-value=8.6 Score=21.35 Aligned_cols=23 Identities=4% Similarity=-0.097 Sum_probs=19.1
Q ss_pred echHHHHhhhccchHHHHHHHHH
Q psy1871 87 ITPSVVSERLKVRGSLARKALEE 109 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLre 109 (139)
+|...||+.|+|.-+.-.+.|+.
T Consensus 22 ~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Confidence 68999999999998877776654
No 302
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=37.32 E-value=30 Score=20.75 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=21.4
Q ss_pred chHHHHhhhccchHHHHHHHHHHHH
Q psy1871 88 TPSVVSERLKVRGSLARKALEELLQ 112 (139)
Q Consensus 88 TPsvlseRlkI~~SLARkaLreL~~ 112 (139)
|...||+.++|+.+-.+.-++.+..
T Consensus 28 s~~eIA~~l~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 28 TTKEIASELFISEKTVRNHISNAMQ 52 (74)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999988888877554
No 303
>3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A*
Probab=36.28 E-value=76 Score=27.99 Aligned_cols=61 Identities=18% Similarity=0.186 Sum_probs=46.7
Q ss_pred CHHHHHHHHhhC-----CCC-eeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEec
Q psy1871 70 DKASYDKLLKEV-----PAY-KLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTR 130 (139)
Q Consensus 70 Dk~tydKl~KEV-----pk~-KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtr 130 (139)
+.+.++.++.|| |+| +.+|+.+|.++|.=.-.--.++..-|++.|+-..-...++..|-..
T Consensus 38 n~~~Le~~l~~VSdP~S~~YGk~LT~~ev~~~f~Ps~~~v~aV~~WL~~~Gi~~~~~~~~~~~I~~~ 104 (544)
T 3edy_A 38 NVERLSELVQAVSDPSSPQYGKYLTLENVADLVRPSPLTLHTVQKWLLAAGAQKCHSVITQDFLTCW 104 (544)
T ss_dssp CHHHHHHHHHHHHCTTSTTTTCCCCHHHHHHHHCCCHHHHHHHHHHHHHHTCEEEEECTTSCEEEEE
T ss_pred CHHHHHHHHHhhcCCCCcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCCceeEecCCCEEEEE
Confidence 566777777776 455 9999999999999999999999999999998543222345555443
No 304
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=36.22 E-value=42 Score=20.77 Aligned_cols=45 Identities=11% Similarity=0.151 Sum_probs=29.7
Q ss_pred CCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCe-eEEeecCceEEEec
Q psy1871 81 VPAYKLITPSVVSERLKVRGSLARKALEELLQKGLI-KQVVKHHAQVIYTR 130 (139)
Q Consensus 81 Vpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlI-k~Vskh~~q~IYtr 130 (139)
.+...+||...|++.++|+-|- |..|...|.+ ++|--+++. +|.+
T Consensus 5 ~~~~~~l~~~eva~~lgvsrst----iy~~~~~g~fP~piklG~~~-~w~~ 50 (66)
T 1z4h_A 5 LQPDSLVDLKFIMADTGFGKTF----IYDRIKSGDLPKAKVIHGRA-RWLY 50 (66)
T ss_dssp CCSSSEECHHHHHHHHSSCHHH----HHHHHHHHHCCCSEESSSCE-EEEH
T ss_pred cccccccCHHHHHHHHCcCHHH----HHHHHHCCCCCCCEEeCCCe-EEeH
Confidence 3456799999999999986655 4555666755 446444444 4543
No 305
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=35.44 E-value=26 Score=21.68 Aligned_cols=40 Identities=10% Similarity=0.247 Sum_probs=27.5
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeEEe-ecC--ceEEEecc
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQVV-KHH--AQVIYTRT 131 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vs-kh~--~q~IYtra 131 (139)
++|+..+|+.|+|+-+. |+.+...|+ ++. ..+ +...|.+.
T Consensus 2 ~lt~~e~a~~LgvS~~T----l~rw~~~G~--P~~~~~g~~~~~~y~~~ 44 (68)
T 1j9i_A 2 EVNKKQLADIFGASIRT----IQNWQEQGM--PVLRGGGKGNEVLYDSA 44 (68)
T ss_dssp EEEHHHHHHHTTCCHHH----HHHHTTTTC--CCSSCCCSSSCCEEEHH
T ss_pred ccCHHHHHHHHCcCHHH----HHHHHHCCC--CeEeeCCCcceEEECHH
Confidence 47999999999997665 566667798 543 233 35566553
No 306
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=33.51 E-value=34 Score=19.99 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=20.6
Q ss_pred chHHHHhhhccchHHHHHHHHHHHH
Q psy1871 88 TPSVVSERLKVRGSLARKALEELLQ 112 (139)
Q Consensus 88 TPsvlseRlkI~~SLARkaLreL~~ 112 (139)
|...||+.|+|+.+-.+.-++.+..
T Consensus 15 s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 15 TNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp CSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 6789999999999988877776654
No 307
>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C
Probab=33.23 E-value=1.1e+02 Score=23.47 Aligned_cols=49 Identities=12% Similarity=0.077 Sum_probs=39.8
Q ss_pred HHHHHHhhCCCCeeechHHHHhh--------hccchHHHHHHHHHHHHcCCeeEEee
Q psy1871 73 SYDKLLKEVPAYKLITPSVVSER--------LKVRGSLARKALEELLQKGLIKQVVK 121 (139)
Q Consensus 73 tydKl~KEVpk~KlITPsvlseR--------lkI~~SLARkaLreL~~kGlIk~Vsk 121 (139)
+|+=+..--.+-.+.|.++|.+= +++.-.+-++||+-|+.+|-..++..
T Consensus 111 iy~wv~~~G~~~sV~TlyEL~~Gd~t~~~ef~gld~~vL~kaL~~L~~~gKaql~~~ 167 (176)
T 3cuq_C 111 IYQWVSRSGQNNSVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEHKAEIITV 167 (176)
T ss_dssp HHHHHHTTTCCSCEEEHHHHHHCTTTTTSTTTTCCHHHHHHHHHHHHHHTSEEECCT
T ss_pred HHHHHHhcCCcCcEEEEeeeccCCCCCCCcccCCCHHHHHHHHHHHHHcCCeEEeec
Confidence 45555555556689999999875 78999999999999999999887753
No 308
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=33.15 E-value=38 Score=21.88 Aligned_cols=48 Identities=23% Similarity=0.315 Sum_probs=35.1
Q ss_pred eCHHHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 69 FDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 69 ~Dk~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
++.+.-.++...+-. =.|...||++|+|+-+..++.++...+.|.+.+
T Consensus 18 ~s~~~r~~i~~~~~~--g~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~ 65 (128)
T 1pdn_C 18 LPNNIRLKIVEMAAD--GIRPCVISRQLRVSHGCVSKILNRYQETGSIRP 65 (128)
T ss_dssp CCHHHHHHHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHHHHHHHCCSSC
T ss_pred CCHHHHHHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHHHHHhhCCccc
Confidence 444555555544321 247899999999999999999999998887643
No 309
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=33.03 E-value=39 Score=28.15 Aligned_cols=40 Identities=13% Similarity=0.264 Sum_probs=34.4
Q ss_pred HHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEe
Q psy1871 90 SVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYT 129 (139)
Q Consensus 90 svlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYt 129 (139)
..++.||..+.+.-++.|..|-+++.|.....++....|.
T Consensus 342 ~ql~~rF~p~~~~IKk~Ie~LIereYleR~~~d~~~y~Yl 381 (382)
T 3dpl_C 342 EILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYM 381 (382)
T ss_dssp HHTTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEEC
T ss_pred HHHHhcCCCCHHHHHHHHHHHHhhhhhccCCCCCCeEEEc
Confidence 3456789999999999999999999999987777777775
No 310
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=31.97 E-value=29 Score=25.86 Aligned_cols=44 Identities=25% Similarity=0.367 Sum_probs=33.4
Q ss_pred ceeeCHHHHHHHHhhCC------CCeeechHHH--HhhhccchHHHHHHHHH
Q psy1871 66 QVLFDKASYDKLLKEVP------AYKLITPSVV--SERLKVRGSLARKALEE 109 (139)
Q Consensus 66 ~Vl~Dk~tydKl~KEVp------k~KlITPsvl--seRlkI~~SLARkaLre 109 (139)
+..|-.++|++|..|-- +-+-||.-+| |-||=+-|.||+-|+.|
T Consensus 63 mnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGELaKhAvse 114 (126)
T 1tzy_B 63 MNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 114 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCcHHHHHHHHHH
Confidence 34466789999988754 4477888774 66888899999988876
No 311
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=31.18 E-value=49 Score=21.34 Aligned_cols=26 Identities=15% Similarity=0.019 Sum_probs=22.2
Q ss_pred echHHHHhhhccchHHHHHHHHHHHH
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQ 112 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~ 112 (139)
+|...||.+|+|+-+.-++-++....
T Consensus 39 ~s~~~iA~~~gIs~sTl~rW~k~~~~ 64 (87)
T 2elh_A 39 ESKASVARDIGVPESTLRGWCKNEDK 64 (87)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 58899999999999988888877654
No 312
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=31.10 E-value=73 Score=17.80 Aligned_cols=35 Identities=14% Similarity=0.258 Sum_probs=25.8
Q ss_pred ceeeCHHHHHHHHhhCCCCeeechHHHHhhhccchH-HHHHHHHHHHH
Q psy1871 66 QVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGS-LARKALEELLQ 112 (139)
Q Consensus 66 ~Vl~Dk~tydKl~KEVpk~KlITPsvlseRlkI~~S-LARkaLreL~~ 112 (139)
.|-+|++++++|- .+|++.+++-| +.|.+|++...
T Consensus 6 tv~l~~~l~~~Ld------------~~a~~~g~srS~~ir~ai~~~l~ 41 (45)
T 2cpg_A 6 TITLSESVLENLE------------KMAREMGLSKSAMISVALENYKK 41 (45)
T ss_dssp EEEEEHHHHHHHH------------HHHHHHTCCHHHHHHHHHHHHHH
T ss_pred EEecCHHHHHHHH------------HHHHHHCcCHHHHHHHHHHHHHH
Confidence 5788999999985 57777777654 56777777654
No 313
>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C
Probab=30.49 E-value=1.1e+02 Score=23.89 Aligned_cols=51 Identities=16% Similarity=0.059 Sum_probs=39.7
Q ss_pred HHHHHHHhhCCCCeeechHHHHhh--------hccchHHHHHHHHHHHHcCCeeEEeec
Q psy1871 72 ASYDKLLKEVPAYKLITPSVVSER--------LKVRGSLARKALEELLQKGLIKQVVKH 122 (139)
Q Consensus 72 ~tydKl~KEVpk~KlITPsvlseR--------lkI~~SLARkaLreL~~kGlIk~Vskh 122 (139)
.+|+=+..--.+-.++|.++|.+= +++--.+-++||+-|+.+|-..++..+
T Consensus 134 ~I~~Wv~~tG~~~sV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~GKaqi~~~~ 192 (202)
T 1xb4_A 134 LILQWFEDSGKLNQVITLYELSEGDETVNWEFHRMPESLLYYCLKPLCDRNRATMLKDE 192 (202)
T ss_dssp HHHHHHHTTSCTTSCEEHHHHC--CCSCCSTTTTCCHHHHHHHHHHHHGGGCCEEEECT
T ss_pred HHHHHHHhcCCcCcEEEeehcccCCCCCCccccCCCHHHHHHHHHHHHHcCCEEEeecC
Confidence 345555555566789999999876 889999999999999999998887543
No 314
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=29.71 E-value=78 Score=21.00 Aligned_cols=42 Identities=19% Similarity=0.183 Sum_probs=33.3
Q ss_pred eeechHHHHhhhcc-chHHHHHHHHHHHHcCCeeEEeecCceE
Q psy1871 85 KLITPSVVSERLKV-RGSLARKALEELLQKGLIKQVVKHHAQV 126 (139)
Q Consensus 85 KlITPsvlseRlkI-~~SLARkaLreL~~kGlIk~Vskh~~q~ 126 (139)
..|+...+|++|++ .-==---++.=|+.=|+|...++++-++
T Consensus 29 ~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~K~~k~~~~W 71 (76)
T 1cf7_A 29 GVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQW 71 (76)
T ss_dssp TEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEEETTEEEE
T ss_pred CcCcHHHHHHHhCCccceehhhHHHHHhHhcceeecCCCcEEE
Confidence 57899999999999 5433344678899999999988876554
No 315
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=29.41 E-value=49 Score=19.51 Aligned_cols=24 Identities=4% Similarity=-0.062 Sum_probs=19.1
Q ss_pred echHHHHhhhccchHHHHHHHHHH
Q psy1871 87 ITPSVVSERLKVRGSLARKALEEL 110 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL 110 (139)
.|...||+.++|+.+-.+..+...
T Consensus 32 ~s~~eIA~~lgis~~tv~~~~~ra 55 (70)
T 2o8x_A 32 LSYADAAAVCGCPVGTIRSRVARA 55 (70)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 478999999999988877665543
No 316
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=29.36 E-value=48 Score=20.21 Aligned_cols=27 Identities=7% Similarity=0.137 Sum_probs=22.3
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHc
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQK 113 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~k 113 (139)
.|...||+.|+|+.+..+..++.+..+
T Consensus 32 ~s~~eIA~~l~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 32 LPNKSIAYDLDISPRTVEVHRANVMAK 58 (79)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 478999999999999998887766543
No 317
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=28.72 E-value=84 Score=21.76 Aligned_cols=46 Identities=4% Similarity=0.014 Sum_probs=35.7
Q ss_pred HHHHHHhhCCCC-eeechHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 73 SYDKLLKEVPAY-KLITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 73 tydKl~KEVpk~-KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
+-++|++=.... +=+.+..||+.++|--.---++|.+|-.+|.|..
T Consensus 20 ~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~S 66 (80)
T 2lnb_A 20 LEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSL 66 (80)
T ss_dssp HHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCccC
Confidence 344444333332 4789999999999999999999999999999744
No 318
>1pm6_A Excisionase; antiparallel beta-sheet, winged-helix, CIS-trans-trans triproline, gene regulation; NMR {Enterobacteria phage HK022} SCOP: a.6.1.7
Probab=28.64 E-value=41 Score=22.39 Aligned_cols=30 Identities=10% Similarity=0.087 Sum_probs=23.0
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCee
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIK 117 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk 117 (139)
+||..++|+++.. .+.+.-|+-+.+.|.|.
T Consensus 2 llTl~EwA~~~~~--~~s~~Tl~r~ar~G~I~ 31 (72)
T 1pm6_A 2 YLTLQEWNARQRR--PRSLETVRRWVRESRIF 31 (72)
T ss_dssp EEEHHHHHHHSSS--CCCHHHHHHHHHHTCEE
T ss_pred eeeHHHHHHHhcC--CCCHHHHHHHHHCCCCC
Confidence 6899999999844 44555667778889993
No 319
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=28.48 E-value=48 Score=22.79 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=35.7
Q ss_pred eCHHHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 69 FDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 69 ~Dk~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
++.+.-.++...+-. =.|...||+.|+|+-+..++.++...+.|.+..
T Consensus 33 ~s~e~r~~iv~~~~~--G~s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~ 80 (149)
T 1k78_A 33 LPDVVRQRIVELAHQ--GVRPCDISRQLRVSHGCVSKILGRYYETGSIKP 80 (149)
T ss_dssp CCHHHHHHHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCC
T ss_pred CCHHHHHHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHHHHHHcCCCCc
Confidence 445555555544421 158899999999999999999999999897543
No 320
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=28.32 E-value=1.1e+02 Score=25.78 Aligned_cols=50 Identities=12% Similarity=0.210 Sum_probs=42.8
Q ss_pred CCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEecc
Q psy1871 82 PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRT 131 (139)
Q Consensus 82 pk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtra 131 (139)
.-|.-||-..+|+.|+++..-+...|-.|-..|.|.-..-+....|++..
T Consensus 312 ~pYsrIsl~~iA~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~ 361 (394)
T 3txn_A 312 EPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFE 361 (394)
T ss_dssp TTCSEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECC
T ss_pred HhhceeeHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEECC
Confidence 45889999999999999999999999999999999987666666666643
No 321
>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum}
Probab=28.03 E-value=48 Score=29.12 Aligned_cols=31 Identities=13% Similarity=0.053 Sum_probs=28.1
Q ss_pred chHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 88 TPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 88 TPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
+.-.||||.++....-..+++.|.+.|||+.
T Consensus 404 slldia~~~~~~~~~~~~~~~~l~~~~l~~~ 434 (435)
T 3k9t_A 404 SLLDIAYKSGMEFRRIKYAADALYRVELLKL 434 (435)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTCEEE
T ss_pred cHHHHHHHhCcCHHHHHHHHHHHHHccCccc
Confidence 4467899999999999999999999999984
No 322
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=27.44 E-value=42 Score=24.88 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=33.8
Q ss_pred cceeeCHHHHHHHHhhCC------CCeeechHHH--HhhhccchHHHHHHHHH
Q psy1871 65 NQVLFDKASYDKLLKEVP------AYKLITPSVV--SERLKVRGSLARKALEE 109 (139)
Q Consensus 65 n~Vl~Dk~tydKl~KEVp------k~KlITPsvl--seRlkI~~SLARkaLre 109 (139)
-+..|-.++|++|..|-- +-+-||.-+| |-||=+-|.||+-|+.|
T Consensus 59 ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGELaKhAvse 111 (123)
T 2nqb_D 59 IMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSE 111 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCcHHHHHHHHHH
Confidence 344567889999988754 4477888764 66888899999988876
No 323
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=27.37 E-value=86 Score=21.30 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHcCCeeEEeecCceEEEec
Q psy1871 100 GSLARKALEELLQKGLIKQVVKHHAQVIYTR 130 (139)
Q Consensus 100 ~SLARkaLreL~~kGlIk~Vskh~~q~IYtr 130 (139)
-++-+.+|+.|.+.|.+..+-......-|--
T Consensus 47 ~~~l~~aLk~~v~~G~l~q~Kg~GasGsfkl 77 (90)
T 1hst_A 47 DLQIKLSIRRLLAAGVLKQTKGVGASGSFRL 77 (90)
T ss_dssp HHHHHHHHHHHHHTTSEEEECCSSCCCEEEE
T ss_pred HHHHHHHHHHHHHcCCeeeecCCCccceeec
Confidence 5667899999999999999987555555543
No 324
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=27.34 E-value=25 Score=24.15 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=21.4
Q ss_pred echHHHHhhhccchHHHHHHHHH
Q psy1871 87 ITPSVVSERLKVRGSLARKALEE 109 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLre 109 (139)
+|...||++++|+.+..+++|..
T Consensus 21 ~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 21 KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 89999999999999999999875
No 325
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=26.99 E-value=81 Score=25.43 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=39.4
Q ss_pred HHhhCCC-CeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEE
Q psy1871 77 LLKEVPA-YKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIY 128 (139)
Q Consensus 77 l~KEVpk-~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IY 128 (139)
...+-.+ +...|+..+++-++++-+.-+.++.+++..|++-.-....+...|
T Consensus 33 ~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 85 (403)
T 3ez9_A 33 KEFNQTEYYQTFTRNAVAKLPKLSRRIVDQAIKEMEEDGYQFNKKQVGNVEQY 85 (403)
T ss_dssp HHHTTTCCCCCBCHHHHHHSTTCCHHHHHHHHHHHHHTSCCCCEEEETTEEEE
T ss_pred cCcCccccCCCcCHHHHHHHhCCCHHHHHHHHHHHhhcCCCCCcCCCCceeee
Confidence 3334444 489999999999999999999999999999998655443334444
No 326
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=26.84 E-value=54 Score=23.35 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=36.5
Q ss_pred HHHHHHHHh-------hCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCee
Q psy1871 71 KASYDKLLK-------EVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIK 117 (139)
Q Consensus 71 k~tydKl~K-------EVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk 117 (139)
++.|-.+.. +-|+ .++|...+...+.-.+.+..++.+-|+.-|||.
T Consensus 46 pe~Yl~iRN~iI~~yr~nP~-~yLT~t~~r~~l~gDv~~i~RVh~FLe~wGLIN 98 (104)
T 2fq3_A 46 PEVYMRYRNFMVNSYRLNPN-EYFSVTTARRNVSGDAAALFRLHKFLTKWGLIN 98 (104)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-SCCCHHHHHHHSCSCHHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHHHHHhCCc-eeeeHHHHHHHccccHHHHHHHHHHHHHcCeec
Confidence 556655543 3344 588999999888878899999999999999995
No 327
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=26.12 E-value=59 Score=18.43 Aligned_cols=26 Identities=8% Similarity=0.256 Sum_probs=21.6
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCC
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGL 115 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGl 115 (139)
+|.+.+|..+++... .+|..|.+.|+
T Consensus 3 ~rv~~lAkel~~~~k---~l~~~l~~~g~ 28 (49)
T 1nd9_A 3 VTIKTLAAERQTSVE---RLVQQFADAGI 28 (49)
T ss_dssp ECTTHHHHHHSSSHH---HHHHHHHHHTS
T ss_pred ccHHHHHHHHCcCHH---HHHHHHHHcCC
Confidence 577899999988754 68888889998
No 328
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=25.83 E-value=1.4e+02 Score=24.53 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=42.9
Q ss_pred HHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEecc
Q psy1871 72 ASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRT 131 (139)
Q Consensus 72 ~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtra 131 (139)
.+++.+..|..---+++...||.+++++..=-..++..|.+.|.-.--++-..+.|-|-+
T Consensus 307 ~ll~~~~~E~~~p~~y~~~~~~~~~~~~~p~~~~~~~~L~~~Gy~~s~tH~~p~~ikTdA 366 (378)
T 2dul_A 307 KLLKMIDQELDIPLFYDTHAIGRRLKIETKKVEEIISALREQGYEATRTHFSPTGIKTSA 366 (378)
T ss_dssp HHHHHHHHSCCSSCCEEHHHHHHHHTCCBCCHHHHHHHHHHTTCCEEEETTEEEEEEESS
T ss_pred HHHHHHHHhcCCCcEEeHHHHHHHcCCCCCCHHHHHHHHHHCCCEEEeeecCCCcEecCC
Confidence 455556666322237999999999999888778899999999997444444455677754
No 329
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=25.01 E-value=60 Score=25.83 Aligned_cols=31 Identities=13% Similarity=0.210 Sum_probs=27.6
Q ss_pred hHHHHhhhccchHHHHHHHHHHHHcCCeeEE
Q psy1871 89 PSVVSERLKVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 89 PsvlseRlkI~~SLARkaLreL~~kGlIk~V 119 (139)
-..+.+.|+|+-+..|.+|.-|.++|.|...
T Consensus 26 Li~l~~~~Gi~e~avRtAlsRL~~~G~L~~~ 56 (247)
T 3kfw_X 26 LIQLTADFGIKETTLRVALTRMVGAGDLVRS 56 (247)
T ss_dssp HHHHHTTTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCeecc
Confidence 3567889999999999999999999999763
No 330
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=24.90 E-value=1.8e+02 Score=21.73 Aligned_cols=45 Identities=13% Similarity=0.100 Sum_probs=36.1
Q ss_pred echHHHHhhhc--cchHHHHHHHHHHHH------cCCeeEEeecCceEEEeccC
Q psy1871 87 ITPSVVSERLK--VRGSLARKALEELLQ------KGLIKQVVKHHAQVIYTRTT 132 (139)
Q Consensus 87 ITPsvlseRlk--I~~SLARkaLreL~~------kGlIk~Vskh~~q~IYtra~ 132 (139)
||...|++.++ +...-.+.+|.+|.+ +| |.++.-...-..+||..
T Consensus 23 vs~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~rg-~~l~~v~~gy~l~t~~~ 75 (162)
T 1t6s_A 23 VNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRT-FRIHAIAGGYRFLTEPE 75 (162)
T ss_dssp BCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCS-EEEEEETTEEEEEECGG
T ss_pred CCHHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCCC-EEEEEECCEEEEEEcHH
Confidence 78999999999 888889999999964 34 56666677788888754
No 331
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=24.69 E-value=62 Score=20.58 Aligned_cols=26 Identities=15% Similarity=0.418 Sum_probs=21.8
Q ss_pred echHHHHhhhccchHHHHHHHHHHHH
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQ 112 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~ 112 (139)
.|...||++|+|+.+-.+.-++.+..
T Consensus 37 ~s~~eIA~~l~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 37 LPNKMIARRLDITESTVKVHVKHMLK 62 (82)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 48899999999999998887776654
No 332
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=24.12 E-value=73 Score=24.20 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=24.5
Q ss_pred HHHHhhhccch---HHHHHHHHHHHHcCCeeEEe
Q psy1871 90 SVVSERLKVRG---SLARKALEELLQKGLIKQVV 120 (139)
Q Consensus 90 svlseRlkI~~---SLARkaLreL~~kGlIk~Vs 120 (139)
..+++.+++.- +-...+|+.|+..|+|....
T Consensus 316 ~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 316 LNICKKLGVEAVTQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp HHHHHHHTCCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 56677776553 77889999999999998753
No 333
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=23.63 E-value=87 Score=20.25 Aligned_cols=29 Identities=14% Similarity=0.285 Sum_probs=22.4
Q ss_pred hhCCCC--eeechHHHHhhhccchHHHHHHH
Q psy1871 79 KEVPAY--KLITPSVVSERLKVRGSLARKAL 107 (139)
Q Consensus 79 KEVpk~--KlITPsvlseRlkI~~SLARkaL 107 (139)
.+||=+ .++|+...|+-|+|.-+-.++.+
T Consensus 7 ~~~p~~~K~~LTi~EaAeylgIg~~~l~~L~ 37 (70)
T 1y6u_A 7 TDIPIWERYTLTIEEASKYFRIGENKLRRLA 37 (70)
T ss_dssp --CCTTTSSEEEHHHHHHHTCSCHHHHHHHH
T ss_pred ccccccccceeCHHHHHHHHCcCHHHHHHHH
Confidence 356654 68999999999999988876655
No 334
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=23.48 E-value=1.1e+02 Score=23.01 Aligned_cols=47 Identities=15% Similarity=0.211 Sum_probs=32.8
Q ss_pred HHHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHH-HHHHcCCeeE
Q psy1871 71 KASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALE-ELLQKGLIKQ 118 (139)
Q Consensus 71 k~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLr-eL~~kGlIk~ 118 (139)
...+..+.+..... .++.+.+|+.|+|.-+-..+-|+ .|.+.|+|..
T Consensus 250 ~~~i~~~~~~~~g~-~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~ 297 (324)
T 1hqc_A 250 REILEVLILRFGGG-PVGLATLATALSEDPGTLEEVHEPYLIRQGLLKR 297 (324)
T ss_dssp HHHHHHHHHHSCSS-CCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhcCC-CchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhc
Confidence 35566666665433 34789999999998765555444 4899999964
No 335
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=23.33 E-value=1.7e+02 Score=19.59 Aligned_cols=51 Identities=14% Similarity=0.231 Sum_probs=38.9
Q ss_pred eeCHHHHHHHH-----------hhCCCCeeechHHHHhhh--ccchHHHHHHHHHHHHcCCeeE
Q psy1871 68 LFDKASYDKLL-----------KEVPAYKLITPSVVSERL--KVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 68 l~Dk~tydKl~-----------KEVpk~KlITPsvlseRl--kI~~SLARkaLreL~~kGlIk~ 118 (139)
+|+.+.++.+. .+.|--.=|....|-.++ ++.-.+-..+|.+|+++|.|+.
T Consensus 58 ~~~~~~~~~l~~~l~~~L~~yH~~~P~~~G~~keeLr~~~~~~~~~~~~~~ll~~l~~~g~l~~ 121 (135)
T 2v9v_A 58 AISTERYQAWWQAVTRALEEFHSRYPLRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQL 121 (135)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHCTTSSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred EecHHHHHHHHHHHHHHHHHHHHhCCCccCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCEEe
Confidence 46666665554 445566667888898886 4788899999999999999865
No 336
>4asn_A TUBR; transcription, tubulin, FTSZ, segregation, partition; 3.50A {Bacillus megaterium}
Probab=23.24 E-value=1.5e+02 Score=21.00 Aligned_cols=48 Identities=23% Similarity=0.313 Sum_probs=41.1
Q ss_pred CCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEec
Q psy1871 83 AYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTR 130 (139)
Q Consensus 83 k~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtr 130 (139)
.+|-|.-+.|+|.+--.-.--|+-|..|+.--.|+.|...+...+|..
T Consensus 31 ~~KAI~K~~I~D~iE~~TA~~RKsL~rLEAi~FI~~V~G~r~HK~~LT 78 (101)
T 4asn_A 31 VFKAIKKSSIADELEYSTANFRKTLNKLEAIHFIGTVTGGKEHKLYLT 78 (101)
T ss_dssp GGGCEEHHHHHTTSCCCSHHHHHHHHHHHHTTCEEEECSSSSCEEEEC
T ss_pred eeeeecHhhHHHHHHHhHHHHHHHHHHHHHHHHhhhcccCccceeehH
Confidence 368899999999777666667999999999999999998888888863
No 337
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=22.32 E-value=91 Score=18.74 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=21.6
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHH
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQ 112 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~ 112 (139)
=.|...||+.|+|+.+-.+..+.....
T Consensus 25 g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 25 DYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 357899999999999988887765544
No 338
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=22.29 E-value=84 Score=25.23 Aligned_cols=32 Identities=16% Similarity=-0.001 Sum_probs=29.8
Q ss_pred echHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 87 ITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
.|+..||+++++.-..++..|+.|.+-|++..
T Consensus 56 ~t~~eLa~~~g~~~~~v~~~L~~l~~~gll~~ 87 (373)
T 2qm3_A 56 DDIWRIVDLSEEPLPLVVAILESLNELGYVTF 87 (373)
T ss_dssp SCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEC
T ss_pred CCHHHHHHHhCCChHHHHHHHHHHhhCCcEEE
Confidence 58899999999999999999999999999864
No 339
>3vc8_A RNA-directed RNA polymerase; NEW fold, HOST membrane, multi-PASS membrane protein, cytopl hydrolase, viral protein; 2.00A {Murine hepatitis virus} PDB: 3vcb_A
Probab=22.17 E-value=60 Score=23.13 Aligned_cols=26 Identities=23% Similarity=0.278 Sum_probs=20.4
Q ss_pred hhhccceeeCHHHHHHHHhhCCCCee
Q psy1871 61 DKLNNQVLFDKASYDKLLKEVPAYKL 86 (139)
Q Consensus 61 dKlnn~Vl~Dk~tydKl~KEVpk~Kl 86 (139)
+-.-...+||++.|.||..||+..++
T Consensus 9 ~AA~~TFvId~~~Y~kL~nsis~~~~ 34 (94)
T 3vc8_A 9 EMALTTFMITKESYCKLKNSVSDVAF 34 (94)
T ss_dssp HHTTSCEEECHHHHHHHHHHSCHHHH
T ss_pred HHhhceEEeccHHHHHHHhhcCHHHH
Confidence 44557789999999999999865433
No 340
>1gng_X Frattide, glycogen synthase kinase-3 beta; transferase, protein kinase, GSK3/frattide complex, phosphorylated, active; HET: PTR; 2.6A {Homo sapiens}
Probab=22.13 E-value=44 Score=20.36 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=22.1
Q ss_pred chHHHHhhhccchHHHHHHHHHHHHcCC
Q psy1871 88 TPSVVSERLKVRGSLARKALEELLQKGL 115 (139)
Q Consensus 88 TPsvlseRlkI~~SLARkaLreL~~kGl 115 (139)
.|+.+-+.|=..|+|-+-|.|.|.++|+
T Consensus 11 dP~~lLQ~Llr~G~LIkEAVrRlq~~~l 38 (39)
T 1gng_X 11 DPHRLLQQLVLSGNLIKEAVRRLHSRRL 38 (39)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHhCcHHHHHHHHHHHccC
Confidence 4788888888899999999999998886
No 341
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=21.63 E-value=1e+02 Score=23.41 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=35.1
Q ss_pred hhhhhhccceeeCHHHHHHHHhhCCCCeeechHHHHhhhccchHHHHHHHHHHHHcCCeeEEeecCceEEEecc
Q psy1871 58 KVRDKLNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRT 131 (139)
Q Consensus 58 KvkdKlnn~Vl~Dk~tydKl~KEVpk~KlITPsvlseRlkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtra 131 (139)
+.++=+++..+=.++-+-.++++- .+. +|.++|| |+|.+-|++|.-..+.+..+|.-.
T Consensus 24 ~I~~iI~~~~I~tQeEL~~~L~~~-Gi~-vTQATlS--------------RDikEL~lvKv~~~~G~~~~Y~lp 81 (170)
T 3lap_A 24 RIVAILSSAQVRSQNELAALLAAE-GIE-VTQATLS--------------RDLEELGAVKLRGADGGTGIYVVP 81 (170)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHT-TCC-CCHHHHH--------------HHHHHHTCEEECCTTCTTCEEECC
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHc-CCC-cCchhHH--------------HHHHHcCcEEeecCCCCEEEEEEC
Confidence 345555555555555444444443 565 5888888 788888999865544333278743
No 342
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=21.55 E-value=42 Score=23.51 Aligned_cols=42 Identities=12% Similarity=0.137 Sum_probs=29.8
Q ss_pred HHHHhhCCCCeeechHHHHhhh----------ccchHHHHHHHHHHHHcCCeeEE
Q psy1871 75 DKLLKEVPAYKLITPSVVSERL----------KVRGSLARKALEELLQKGLIKQV 119 (139)
Q Consensus 75 dKl~KEVpk~KlITPsvlseRl----------kI~~SLARkaLreL~~kGlIk~V 119 (139)
..+..|-|. .|+..|+++| .++.+.-++.|+.+...|+=-+|
T Consensus 93 ~~~~~~~~~---~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~~~~~~~ 144 (159)
T 2k27_A 93 GDYKRQNPT---MFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPM 144 (159)
T ss_dssp HHHHHHCSS---SCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCCCSCCCC
T ss_pred HHHHHHCcc---chHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCCCccCcc
Confidence 334444443 6888999988 36778888999998888875544
No 343
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.24 E-value=1.6e+02 Score=20.58 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=32.7
Q ss_pred hccchHHHHHHHHHHHHcCCeeEEeecCceEEEeccC
Q psy1871 96 LKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRTT 132 (139)
Q Consensus 96 lkI~~SLARkaLreL~~kGlIk~Vskh~~q~IYtra~ 132 (139)
|..+.++-++.|..|-+++.|.....++...+|.-+.
T Consensus 61 F~p~~~~IKk~IE~LIereYleR~~~d~~~y~YlA~~ 97 (101)
T 2do7_A 61 FPVKPADLKKRIESLIDRDYMERDKENPNQYNYIASG 97 (101)
T ss_dssp SCCCHHHHHHHHHHHHHTTSEEECSSCTTEEEECCCC
T ss_pred CCCCHHHHHHHHHHHhhhhHHhcCCCCCCeEEEecCC
Confidence 7788999999999999999999988778889998544
No 344
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.04 E-value=50 Score=22.24 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=26.8
Q ss_pred chhhhhhhccceeeCHHHHHHHHhhCCCCeeechHHHHhh
Q psy1871 56 KGKVRDKLNNQVLFDKASYDKLLKEVPAYKLITPSVVSER 95 (139)
Q Consensus 56 KgKvkdKlnn~Vl~Dk~tydKl~KEVpk~KlITPsvlseR 95 (139)
-.+.+-=+|--+||-++...+|..+.|... ...|+..
T Consensus 15 p~~pKrP~say~lF~~~~r~~i~~~~P~~~---~~eisk~ 51 (102)
T 2co9_A 15 PNEPQKPVSAYALFFRDTQAAIKGQNPNAT---FGEVSKI 51 (102)
T ss_dssp CCSCCCCCCHHHHTHHHHHHHHHHHCTTSC---HHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCC---HHHHHHH
Confidence 344555577778999999999999999964 4454433
No 345
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=20.92 E-value=56 Score=22.44 Aligned_cols=33 Identities=15% Similarity=0.020 Sum_probs=27.7
Q ss_pred eechHHHHhhhccchHHHHHHHHHHHHcCCeeE
Q psy1871 86 LITPSVVSERLKVRGSLARKALEELLQKGLIKQ 118 (139)
Q Consensus 86 lITPsvlseRlkI~~SLARkaLreL~~kGlIk~ 118 (139)
.+|...+|.||+|+-|.-..=.+++.+.|.--+
T Consensus 49 ~~s~~e~arry~Is~s~i~~W~r~~~~~G~~~L 81 (95)
T 2jrt_A 49 LITEREALDRYSLSEEEFALWRSAVAAHGEKAL 81 (95)
T ss_dssp SSCHHHHHHHTTCCHHHHHHHHHHTTTCCTTSC
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhHHHH
Confidence 458899999999999999988888888776543
No 346
>2ovi_A Hypothetical protein CHUX; SETS of 9 antiparallel beta sheet core flanked by 2 SETS of 3 helices and another 2 SETS of helices; 2.05A {Escherichia coli O157}
Probab=20.39 E-value=1.1e+02 Score=22.82 Aligned_cols=54 Identities=20% Similarity=0.301 Sum_probs=37.9
Q ss_pred HHHHHHhhCCCCeeechHHHHhhhccc---------------hHHHHHHHHHHHHcCCeeEEeecCceE-EEe
Q psy1871 73 SYDKLLKEVPAYKLITPSVVSERLKVR---------------GSLARKALEELLQKGLIKQVVKHHAQV-IYT 129 (139)
Q Consensus 73 tydKl~KEVpk~KlITPsvlseRlkI~---------------~SLARkaLreL~~kGlIk~Vskh~~q~-IYt 129 (139)
.+..++.|-|+. .+..++.+|+|+ ++-...+|++|..-|-|..+++|+... +++
T Consensus 5 ~~~~~~~~~p~~---~~~dla~~l~vse~e~~~a~~~~~~l~~~~~~~lL~~l~~~G~vm~iv~N~g~V~E~~ 74 (164)
T 2ovi_A 5 SLQEFLKTEPDG---TLEVVAEQYNTTLLEVVRNLPSSTVVPGDKFDTVWDTVCEWGNVTTLVHTADVILEFS 74 (164)
T ss_dssp CHHHHTTSCCSS---CHHHHHHHTTSCHHHHHHTSTTCEEEEGGGHHHHHHHHHTSCEEEEEEECSSEEEEEE
T ss_pred HHHHHHHHCcCc---hHHHHHHHcCCCHHHHHHhCCCCEEECHHHHHHHHHHhhhcCcEEEEEcCCCEEEEEE
Confidence 455666666664 447777777765 445799999999999888887766443 444
No 347
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=20.10 E-value=73 Score=20.04 Aligned_cols=19 Identities=11% Similarity=0.209 Sum_probs=11.5
Q ss_pred ccchHHHHHHHHHHHHcCC
Q psy1871 97 KVRGSLARKALEELLQKGL 115 (139)
Q Consensus 97 kI~~SLARkaLreL~~kGl 115 (139)
.|+-..+.++++-+++-|.
T Consensus 29 ~vs~et~~rI~~aa~~lgY 47 (65)
T 1uxc_A 29 RVSDKTVEKVMAVVREHNY 47 (65)
T ss_dssp TCTTHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhCC
Confidence 4555666666666655554
Done!