Your job contains 1 sequence.
>psy1871
MGYLYAMETSSPMVLKSYKHPPKKDTKGGSSKQPQKTQKKKEGGSGGKAKKKKWSKGKVR
DKLNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVV
KHHAQVIYTRTTKGDDPVA
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1871
(139 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0086472 - symbol:RpS25 "Ribosomal protein S25" spe... 313 5.0e-28 1
UNIPROTKB|Q56JX5 - symbol:RPS25 "40S ribosomal protein S2... 295 4.0e-26 1
UNIPROTKB|P62851 - symbol:RPS25 "40S ribosomal protein S2... 295 4.0e-26 1
UNIPROTKB|F2Z5G8 - symbol:RPS25 "Uncharacterized protein"... 295 4.0e-26 1
MGI|MGI:1922867 - symbol:Rps25 "ribosomal protein S25" sp... 295 4.0e-26 1
RGD|621043 - symbol:Rps25 "ribosomal protein s25" species... 295 4.0e-26 1
ZFIN|ZDB-GENE-040426-1788 - symbol:rps25 "ribosomal prote... 294 5.2e-26 1
UNIPROTKB|F1NU56 - symbol:RPS25 "Uncharacterized protein"... 293 6.6e-26 1
WB|WBGene00004494 - symbol:rps-25 species:6239 "Caenorhab... 259 2.6e-22 1
TAIR|locus:505006559 - symbol:AT4G34555 "AT4G34555" speci... 232 1.9e-19 1
TAIR|locus:2136348 - symbol:AT4G39200 "AT4G39200" species... 228 5.1e-19 1
TAIR|locus:2049369 - symbol:AT2G21580 "AT2G21580" species... 225 1.1e-18 1
DICTYBASE|DDB_G0271148 - symbol:rps25 "40S ribosomal prot... 221 2.8e-18 1
SGD|S000003259 - symbol:RPS25A "Protein component of the ... 179 7.9e-14 1
SGD|S000004325 - symbol:RPS25B "Protein component of the ... 174 2.7e-13 1
CGD|CAL0004084 - symbol:RPS25B species:5476 "Candida albi... 173 3.4e-13 1
UNIPROTKB|Q59NZ2 - symbol:RPS25B "Likely cytosolic riboso... 173 3.4e-13 1
POMBASE|SPAC694.05c - symbol:rps2502 "40S ribosomal prote... 165 2.4e-12 1
POMBASE|SPBC3D6.15 - symbol:rps2501 "40S ribosomal protei... 165 2.4e-12 1
UNIPROTKB|G4MKR2 - symbol:MGG_06657 "40S ribosomal protei... 161 6.4e-12 1
ASPGD|ASPL0000058475 - symbol:AN10130 species:162425 "Eme... 160 8.2e-12 1
GENEDB_PFALCIPARUM|PF14_0205 - symbol:PF14_0205 "ribosoma... 126 3.3e-08 1
UNIPROTKB|Q8ILN8 - symbol:PF14_0205 "40S ribosomal protei... 126 3.3e-08 1
>FB|FBgn0086472 [details] [associations]
symbol:RpS25 "Ribosomal protein S25" species:7227 "Drosophila
melanogaster" [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISS;NAS] [GO:0006412 "translation" evidence=ISS;NAS]
[GO:0003735 "structural constituent of ribosome"
evidence=ISS;IDA;NAS] [GO:0005840 "ribosome" evidence=IDA;NAS]
Pfam:PF03297 EMBL:AE014297 GO:GO:0005840 GO:GO:0003735
eggNOG:COG4901 KO:K02975 OMA:QLIYTRN InterPro:IPR004977
PANTHER:PTHR12850 ProDom:PD012268 GeneTree:ENSGT00390000004856
CTD:6230 EMBL:AY071076 EMBL:BT050549 EMBL:U03289 RefSeq:NP_524315.2
RefSeq:NP_731544.1 UniGene:Dm.1146 ProteinModelPortal:P48588
SMR:P48588 DIP:DIP-17632N IntAct:P48588 MINT:MINT-943476
STRING:P48588 PaxDb:P48588 EnsemblMetazoa:FBtr0082369
EnsemblMetazoa:FBtr0082370 GeneID:41343 KEGG:dme:Dmel_CG6684
FlyBase:FBgn0086472 InParanoid:P48588 OrthoDB:EOG4XSJ6M
PhylomeDB:P48588 ChiTaRS:RPS25 GenomeRNAi:41343 NextBio:823370
Bgee:P48588 GermOnline:CG6684 Uniprot:P48588
Length = 117
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 61/74 (82%), Positives = 70/74 (94%)
Query: 63 LNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKH 122
LNNQVLFDKA+Y+KL KEVPAYKLITPSVVSERLK+RGSLA++AL EL +KGLIKQVV+H
Sbjct: 43 LNNQVLFDKATYEKLYKEVPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIKQVVQH 102
Query: 123 HAQVIYTRTTKGDD 136
H+QVIYTR TKGD+
Sbjct: 103 HSQVIYTRATKGDE 116
>UNIPROTKB|Q56JX5 [details] [associations]
symbol:RPS25 "40S ribosomal protein S25" species:9913 "Bos
taurus" [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] Pfam:PF03297
GO:GO:0005840 eggNOG:COG4901 HOGENOM:HOG000203673 KO:K02975
OMA:QLIYTRN InterPro:IPR004977 PANTHER:PTHR12850 ProDom:PD012268
GeneTree:ENSGT00390000004856 EMBL:AY911354 EMBL:BC102560
IPI:IPI00691584 RefSeq:NP_001020486.1 RefSeq:XP_001790348.1
RefSeq:XP_003583143.1 RefSeq:XP_003583144.1 UniGene:Bt.28971
ProteinModelPortal:Q56JX5 SMR:Q56JX5 STRING:Q56JX5 PRIDE:Q56JX5
Ensembl:ENSBTAT00000025270 Ensembl:ENSBTAT00000040046 GeneID:282052
GeneID:785691 KEGG:bta:282052 KEGG:bta:785691 CTD:6230
HOVERGEN:HBG054579 InParanoid:Q56JX5 OrthoDB:EOG4TMR3R
NextBio:20805911 Uniprot:Q56JX5
Length = 125
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 62/78 (79%), Positives = 66/78 (84%)
Query: 63 LNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKH 122
LNN VLFDKA+YDKL KEVP YKLITP+VVSERLK+RGSLAR AL+ELL KGLIK V KH
Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKH 103
Query: 123 HAQVIYTRTTKGDD-PVA 139
AQVIYTR TKG D P A
Sbjct: 104 RAQVIYTRNTKGGDAPAA 121
>UNIPROTKB|P62851 [details] [associations]
symbol:RPS25 "40S ribosomal protein S25" species:9606 "Homo
sapiens" [GO:0000028 "ribosomal small subunit assembly"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IDA] [GO:0006412 "translation" evidence=IC;NAS;TAS]
[GO:0015935 "small ribosomal subunit" evidence=IDA] [GO:0005840
"ribosome" evidence=NAS;IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0006414 "translational elongation" evidence=TAS] [GO:0006415
"translational termination" evidence=TAS] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019058 "viral infectious cycle"
evidence=TAS] [GO:0019083 "viral transcription" evidence=TAS]
[GO:0044267 "cellular protein metabolic process" evidence=TAS]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 Pfam:PF03297 Reactome:REACT_116125
GO:GO:0005730 GO:GO:0000184 EMBL:CH471065 GO:GO:0006413
GO:GO:0003723 GO:GO:0003735 GO:GO:0000028 GO:GO:0006415
GO:GO:0006414 GO:GO:0022627 Reactome:REACT_1762 GO:GO:0006614
GO:GO:0019083 eggNOG:COG4901 HOGENOM:HOG000203673 KO:K02975
OMA:QLIYTRN InterPro:IPR004977 PANTHER:PTHR12850 ProDom:PD012268
CTD:6230 HOVERGEN:HBG054579 OrthoDB:EOG4TMR3R ChiTaRS:RPS25
EMBL:M64716 EMBL:AB061844 EMBL:AK311883 EMBL:BC003537 EMBL:BC004294
EMBL:BC004986 IPI:IPI00012750 PIR:JQ1347 RefSeq:NP_001019.1
UniGene:Hs.512676 ProteinModelPortal:P62851 SMR:P62851
IntAct:P62851 MINT:MINT-5000124 STRING:P62851 PhosphoSite:P62851
DMDM:51338648 PaxDb:P62851 PRIDE:P62851 DNASU:6230
Ensembl:ENST00000527673 Ensembl:ENST00000573464 GeneID:6230
KEGG:hsa:6230 UCSC:uc001pun.2 GeneCards:GC11M118886 HGNC:HGNC:10413
HPA:HPA031801 MIM:180465 neXtProt:NX_P62851 PharmGKB:PA34817
InParanoid:P62851 PhylomeDB:P62851 GenomeRNAi:6230 NextBio:24185
ArrayExpress:P62851 Bgee:P62851 CleanEx:HS_RPS25
Genevestigator:P62851 GermOnline:ENSG00000118181 Uniprot:P62851
Length = 125
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 62/78 (79%), Positives = 66/78 (84%)
Query: 63 LNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKH 122
LNN VLFDKA+YDKL KEVP YKLITP+VVSERLK+RGSLAR AL+ELL KGLIK V KH
Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKH 103
Query: 123 HAQVIYTRTTKGDD-PVA 139
AQVIYTR TKG D P A
Sbjct: 104 RAQVIYTRNTKGGDAPAA 121
>UNIPROTKB|F2Z5G8 [details] [associations]
symbol:RPS25 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] Pfam:PF03297
GO:GO:0005730 GO:GO:0022627 OMA:QLIYTRN InterPro:IPR004977
PANTHER:PTHR12850 ProDom:PD012268 GeneTree:ENSGT00390000004856
EMBL:CU695209 Ensembl:ENSSSCT00000016469 Uniprot:F2Z5G8
Length = 125
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 62/78 (79%), Positives = 66/78 (84%)
Query: 63 LNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKH 122
LNN VLFDKA+YDKL KEVP YKLITP+VVSERLK+RGSLAR AL+ELL KGLIK V KH
Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKH 103
Query: 123 HAQVIYTRTTKGDD-PVA 139
AQVIYTR TKG D P A
Sbjct: 104 RAQVIYTRNTKGGDAPAA 121
>MGI|MGI:1922867 [details] [associations]
symbol:Rps25 "ribosomal protein S25" species:10090 "Mus
musculus" [GO:0000028 "ribosomal small subunit assembly"
evidence=ISO] [GO:0003735 "structural constituent of ribosome"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005840
"ribosome" evidence=ISO] [GO:0015935 "small ribosomal subunit"
evidence=ISO] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
MGI:MGI:1922867 Pfam:PF03297 GO:GO:0005730 GO:GO:0003735
GO:GO:0000028 GO:GO:0022627 eggNOG:COG4901 HOGENOM:HOG000203673
KO:K02975 OMA:QLIYTRN InterPro:IPR004977 PANTHER:PTHR12850
ProDom:PD012268 CTD:6230 HOVERGEN:HBG054579 OrthoDB:EOG4TMR3R
EMBL:AK012696 EMBL:AK077450 EMBL:BC002088 EMBL:BC027208
EMBL:BC079541 IPI:IPI00137735 RefSeq:NP_077228.1 UniGene:Mm.292027
UniGene:Mm.391885 UniGene:Mm.427157 ProteinModelPortal:P62852
SMR:P62852 IntAct:P62852 STRING:P62852 PhosphoSite:P62852
PaxDb:P62852 PRIDE:P62852 Ensembl:ENSMUST00000080300 GeneID:75617
KEGG:mmu:75617 InParanoid:P62852 NextBio:343524 Bgee:P62852
CleanEx:MM_RPS25 Genevestigator:P62852
GermOnline:ENSMUSG00000009927 Uniprot:P62852
Length = 125
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 62/78 (79%), Positives = 66/78 (84%)
Query: 63 LNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKH 122
LNN VLFDKA+YDKL KEVP YKLITP+VVSERLK+RGSLAR AL+ELL KGLIK V KH
Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKH 103
Query: 123 HAQVIYTRTTKGDD-PVA 139
AQVIYTR TKG D P A
Sbjct: 104 RAQVIYTRNTKGGDAPAA 121
>RGD|621043 [details] [associations]
symbol:Rps25 "ribosomal protein s25" species:10116 "Rattus
norvegicus" [GO:0000028 "ribosomal small subunit assembly"
evidence=IMP] [GO:0003735 "structural constituent of ribosome"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005840 "ribosome" evidence=ISO]
[GO:0015935 "small ribosomal subunit" evidence=ISO] [GO:0022627
"cytosolic small ribosomal subunit" evidence=ISO;IDA] RGD:621043
Pfam:PF03297 GO:GO:0005730 GO:GO:0003735 GO:GO:0000028
GO:GO:0022627 eggNOG:COG4901 HOGENOM:HOG000203673 KO:K02975
InterPro:IPR004977 PANTHER:PTHR12850 ProDom:PD012268
GeneTree:ENSGT00390000004856 CTD:6230 HOVERGEN:HBG054579
OrthoDB:EOG4TMR3R EMBL:X62482 EMBL:BC103658 IPI:IPI00215184
PIR:A38969 RefSeq:NP_001005528.1 UniGene:Rn.198166 UniGene:Rn.60855
ProteinModelPortal:P62853 SMR:P62853 IntAct:P62853 STRING:P62853
PRIDE:P62853 Ensembl:ENSRNOT00000029546 GeneID:122799
KEGG:rno:122799 UCSC:RGD:621043 InParanoid:P62853 NextBio:620451
Genevestigator:P62853 GermOnline:ENSRNOG00000027503 Uniprot:P62853
Length = 125
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 62/78 (79%), Positives = 66/78 (84%)
Query: 63 LNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKH 122
LNN VLFDKA+YDKL KEVP YKLITP+VVSERLK+RGSLAR AL+ELL KGLIK V KH
Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKH 103
Query: 123 HAQVIYTRTTKGDD-PVA 139
AQVIYTR TKG D P A
Sbjct: 104 RAQVIYTRNTKGGDAPAA 121
>ZFIN|ZDB-GENE-040426-1788 [details] [associations]
symbol:rps25 "ribosomal protein S25" species:7955
"Danio rerio" [GO:0005840 "ribosome" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] Pfam:PF03297
ZFIN:ZDB-GENE-040426-1788 InterPro:IPR004977 PANTHER:PTHR12850
ProDom:PD012268 GeneTree:ENSGT00390000004856 EMBL:CU633908
Ensembl:ENSDART00000061274 Bgee:G1K2N0 Uniprot:G1K2N0
Length = 132
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 61/77 (79%), Positives = 65/77 (84%)
Query: 63 LNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKH 122
LNN VLFDKA+YDKL KEVP YKLITP+VVSERLK+RGSLAR AL+ELL KGLIK V KH
Sbjct: 51 LNNLVLFDKATYDKLYKEVPNYKLITPAVVSERLKIRGSLARAALQELLGKGLIKLVSKH 110
Query: 123 HAQVIYTRTTKGDDPVA 139
AQVIYTR TKG D A
Sbjct: 111 RAQVIYTRNTKGTDEAA 127
>UNIPROTKB|F1NU56 [details] [associations]
symbol:RPS25 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IEA] Pfam:PF03297
GO:GO:0005730 GO:GO:0022627 OMA:QLIYTRN InterPro:IPR004977
PANTHER:PTHR12850 ProDom:PD012268 GeneTree:ENSGT00390000004856
EMBL:AADN02058036 IPI:IPI00586834 Ensembl:ENSGALT00000012476
Uniprot:F1NU56
Length = 139
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 62/78 (79%), Positives = 66/78 (84%)
Query: 63 LNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKH 122
LNN VLFDKA+YDKL KEVP YKLITP+VVSERLK+RGSLAR AL+ELL KGLIK V KH
Sbjct: 58 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLGKGLIKLVSKH 117
Query: 123 HAQVIYTRTTKGDD-PVA 139
AQVIYTR TKG D P A
Sbjct: 118 RAQVIYTRNTKGGDAPAA 135
>WB|WBGene00004494 [details] [associations]
symbol:rps-25 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] Pfam:PF03297 GO:GO:0009792 GO:GO:0040010
GO:GO:0005840 EMBL:FO080181 eggNOG:COG4901 HOGENOM:HOG000203673
KO:K02975 InterPro:IPR004977 PANTHER:PTHR12850 ProDom:PD012268
OMA:WIYTRTT GeneTree:ENSGT00390000004856 PIR:E88700
RefSeq:NP_500895.1 ProteinModelPortal:P52821 SMR:P52821
IntAct:P52821 STRING:P52821 PaxDb:P52821 EnsemblMetazoa:K02B2.5.1
EnsemblMetazoa:K02B2.5.2 GeneID:177365 KEGG:cel:CELE_K02B2.5
UCSC:K02B2.5.1 CTD:177365 WormBase:K02B2.5 InParanoid:P52821
NextBio:896468 Uniprot:P52821
Length = 117
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 53/76 (69%), Positives = 60/76 (78%)
Query: 63 LNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKH 122
LNN VLFD+A+YDKL KEV YKLITPSVVSERLKVR SLA+ L+EL KGL+K VV H
Sbjct: 40 LNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAKGLVKCVVHH 99
Query: 123 HAQVIYTRTTKGDDPV 138
H QV+YTR TK D +
Sbjct: 100 HGQVVYTRATKEADVI 115
>TAIR|locus:505006559 [details] [associations]
symbol:AT4G34555 "AT4G34555" species:3702 "Arabidopsis
thaliana" [GO:0003735 "structural constituent of ribosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005840
"ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA]
EnsemblPlants:AT4G34555.1 Pfam:PF03297 EMBL:CP002687
GenomeReviews:CT486007_GR EMBL:AL161585 EMBL:AL023094 GO:GO:0022627
eggNOG:COG4901 KO:K02975 ProtClustDB:CLSN2913154 InterPro:IPR004977
PANTHER:PTHR12850 ProDom:PD012268 EMBL:AK117527 EMBL:AK176080
EMBL:BT025584 EMBL:AY088627 IPI:IPI00530685 RefSeq:NP_567968.1
UniGene:At.31494 ProteinModelPortal:Q8GYL5 SMR:Q8GYL5 STRING:Q8GYL5
GeneID:829607 KEGG:ath:AT4G34555 GeneFarm:987 TAIR:At4g34555
InParanoid:Q8GYL5 OMA:YKMITIS PhylomeDB:Q8GYL5
Genevestigator:Q8GYL5 GermOnline:AT4G34555 Uniprot:Q8GYL5
Length = 108
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 43/72 (59%), Positives = 57/72 (79%)
Query: 63 LNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKH 122
+NN VLFD+A+YDKLL E P +KLITPS++S+RL++ GSLAR+A+ EL+ KG I+ V H
Sbjct: 37 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAH 96
Query: 123 HAQVIYTRTTKG 134
+Q IYTR T G
Sbjct: 97 SSQQIYTRATHG 108
>TAIR|locus:2136348 [details] [associations]
symbol:AT4G39200 "AT4G39200" species:3702 "Arabidopsis
thaliana" [GO:0003735 "structural constituent of ribosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005840
"ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0022626 "cytosolic ribosome" evidence=IDA] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=RCA] EnsemblPlants:AT4G39200.1
Pfam:PF03297 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161594
EMBL:AL050351 GO:GO:0022627 eggNOG:COG4901 HOGENOM:HOG000203673
KO:K02975 ProtClustDB:CLSN2913154 InterPro:IPR004977
PANTHER:PTHR12850 ProDom:PD012268 EMBL:AY037192 EMBL:AY057720
EMBL:AY085575 IPI:IPI00524965 PIR:T08568 RefSeq:NP_195631.1
UniGene:At.22591 ProteinModelPortal:Q9T029 SMR:Q9T029 STRING:Q9T029
PaxDb:Q9T029 PRIDE:Q9T029 GeneID:830075 KEGG:ath:AT4G39200
GeneFarm:984 TAIR:At4g39200 InParanoid:Q9T029 OMA:WIYTRTT
PhylomeDB:Q9T029 Genevestigator:Q9T029 GermOnline:AT4G39200
Uniprot:Q9T029
Length = 108
Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 41/70 (58%), Positives = 57/70 (81%)
Query: 63 LNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKH 122
+NN VLFD+A+YDKLL E P +KLITPS++S+R+++ GSLAR+A+ EL+ KG+I+ V H
Sbjct: 37 VNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAH 96
Query: 123 HAQVIYTRTT 132
+Q IYTR T
Sbjct: 97 SSQQIYTRAT 106
>TAIR|locus:2049369 [details] [associations]
symbol:AT2G21580 "AT2G21580" species:3702 "Arabidopsis
thaliana" [GO:0003735 "structural constituent of ribosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005840
"ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0022626 "cytosolic ribosome" evidence=IDA] [GO:0005774
"vacuolar membrane" evidence=IDA] [GO:0022627 "cytosolic small
ribosomal subunit" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA]
EnsemblPlants:AT2G21580.1 Pfam:PF03297 GO:GO:0009506 GO:GO:0005774
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0022627 EMBL:AC007119
EMBL:AY048211 EMBL:AY091695 IPI:IPI00544795 PIR:H84602
RefSeq:NP_179752.1 UniGene:At.14390 ProteinModelPortal:Q9SIK2
SMR:Q9SIK2 STRING:Q9SIK2 PaxDb:Q9SIK2 PRIDE:Q9SIK2 GeneID:816696
KEGG:ath:AT2G21580 TAIR:At2g21580 eggNOG:COG4901
HOGENOM:HOG000203673 InParanoid:Q9SIK2 KO:K02975 OMA:QLIYTRN
PhylomeDB:Q9SIK2 ProtClustDB:CLSN2913154 Genevestigator:Q9SIK2
InterPro:IPR004977 PANTHER:PTHR12850 ProDom:PD012268 Uniprot:Q9SIK2
Length = 108
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 41/70 (58%), Positives = 56/70 (80%)
Query: 63 LNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKH 122
+NN VLFD+ +YDKLL E P +KLITPS++S+R+++ GSLAR+A+ EL+ KGLI+ V H
Sbjct: 37 VNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAH 96
Query: 123 HAQVIYTRTT 132
+Q IYTR T
Sbjct: 97 SSQQIYTRAT 106
>DICTYBASE|DDB_G0271148 [details] [associations]
symbol:rps25 "40S ribosomal protein S25"
species:44689 "Dictyostelium discoideum" [GO:0006412 "translation"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
dictyBase:DDB_G0271148 Pfam:PF03297 GO:GO:0006412
GenomeReviews:CM000151_GR GO:GO:0003723 EMBL:AAFI02000006
GO:GO:0005840 eggNOG:COG4901 KO:K02975 InterPro:IPR004977
PANTHER:PTHR12850 ProDom:PD012268 OMA:GILCKEV EMBL:X69484
PIR:JC1411 RefSeq:XP_645662.1 STRING:Q03409 PRIDE:Q03409
EnsemblProtists:DDB0215350 GeneID:8617854 KEGG:ddi:DDB_G0271148
Uniprot:Q03409
Length = 110
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 42/68 (61%), Positives = 55/68 (80%)
Query: 63 LNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKH 122
LNN +LFDK +Y KLLKE+P K+IT +VVSER+K GSLAR+A++ELL KGLIKQ++K
Sbjct: 41 LNNAILFDKETYAKLLKEMPTAKVITTAVVSERMKCNGSLARRAIKELLSKGLIKQIIKG 100
Query: 123 HAQVIYTR 130
H +YT+
Sbjct: 101 HGNGVYTK 108
>SGD|S000003259 [details] [associations]
symbol:RPS25A "Protein component of the small (40S) ribosomal
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IDA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA]
[GO:0002181 "cytoplasmic translation" evidence=IC] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] SGD:S000003259
Pfam:PF03297 EMBL:BK006941 GO:GO:0003735 GO:GO:0002181
GO:GO:0022627 PDB:3IZB PDB:3O2Z PDB:3O30 PDB:3U5C PDB:3U5G
PDBsum:3IZB PDBsum:3O2Z PDBsum:3O30 PDBsum:3U5C PDBsum:3U5G
EMBL:DQ115389 eggNOG:COG4901 HOGENOM:HOG000203673 KO:K02975
OMA:QLIYTRN InterPro:IPR004977 PANTHER:PTHR12850 ProDom:PD012268
OrthoDB:EOG4X0R34 EMBL:X03013 EMBL:Z72812 EMBL:EF123137 PIR:S05844
RefSeq:NP_011541.1 ProteinModelPortal:Q3E792 SMR:Q3E792
IntAct:Q3E792 MINT:MINT-490524 STRING:Q3E792 PaxDb:Q3E792
EnsemblFungi:YGR027C GeneID:852911 KEGG:sce:YGR027C CYGD:YGR027c
GeneTree:ENSGT00390000004856 NextBio:972603 Genevestigator:Q3E792
Uniprot:Q3E792
Length = 108
Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 34/69 (49%), Positives = 49/69 (71%)
Query: 67 VLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQV 126
V+ D+ YD++LKEVP Y+ ++ SV+ +RLK+ GSLAR AL L ++G+IK + KH Q
Sbjct: 40 VILDQEKYDRILKEVPTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQA 99
Query: 127 IYTRTTKGD 135
IYTR T +
Sbjct: 100 IYTRATASE 108
>SGD|S000004325 [details] [associations]
symbol:RPS25B "Protein component of the small (40S) ribosomal
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0002181
"cytoplasmic translation" evidence=IC] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IDA] SGD:S000004325 Pfam:PF03297
EMBL:BK006945 GO:GO:0003735 GO:GO:0002181 EMBL:U19028 GO:GO:0022627
HOGENOM:HOG000203673 KO:K02975 InterPro:IPR004977 PANTHER:PTHR12850
ProDom:PD012268 OMA:YKMITIS OrthoDB:EOG4X0R34
GeneTree:ENSGT00390000004856 EMBL:AY693146 EMBL:EF123130 PIR:S51338
RefSeq:NP_013437.1 ProteinModelPortal:P0C0T4 SMR:P0C0T4
DIP:DIP-5077N IntAct:P0C0T4 MINT:MINT-490537 STRING:P0C0T4
EnsemblFungi:YLR333C GeneID:851045 KEGG:sce:YLR333C CYGD:YLR333c
NextBio:967653 Genevestigator:P0C0T4 Uniprot:P0C0T4
Length = 108
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 33/69 (47%), Positives = 48/69 (69%)
Query: 67 VLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQV 126
V+ D+ YD++LKEVP Y+ ++ SV+ +RLK+ GSLAR AL L ++G+IK + KH Q
Sbjct: 40 VILDQEKYDRILKEVPTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQA 99
Query: 127 IYTRTTKGD 135
IYTR +
Sbjct: 100 IYTRAAASE 108
>CGD|CAL0004084 [details] [associations]
symbol:RPS25B species:5476 "Candida albicans" [GO:0022627
"cytosolic small ribosomal subunit" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] CGD:CAL0004084 Pfam:PF03297
EMBL:AACQ01000199 eggNOG:COG4901 HOGENOM:HOG000203673 KO:K02975
InterPro:IPR004977 PANTHER:PTHR12850 ProDom:PD012268
RefSeq:XP_711416.1 STRING:Q59NZ2 GeneID:3646972 KEGG:cal:CaO19.6663
Uniprot:Q59NZ2
Length = 105
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 33/64 (51%), Positives = 47/64 (73%)
Query: 67 VLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQV 126
V+ D+ YD++LK+VP YK ++ SV+ +RLK+ GSLAR AL +L + G+I V+KH Q
Sbjct: 40 VILDQEKYDRILKDVPTYKYVSVSVLVDRLKIGGSLARVALRQLEEDGIITPVLKHSKQA 99
Query: 127 IYTR 130
IYTR
Sbjct: 100 IYTR 103
>UNIPROTKB|Q59NZ2 [details] [associations]
symbol:RPS25B "Likely cytosolic ribosomal protein S25"
species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] CGD:CAL0004084 Pfam:PF03297
EMBL:AACQ01000199 eggNOG:COG4901 HOGENOM:HOG000203673 KO:K02975
InterPro:IPR004977 PANTHER:PTHR12850 ProDom:PD012268
RefSeq:XP_711416.1 STRING:Q59NZ2 GeneID:3646972 KEGG:cal:CaO19.6663
Uniprot:Q59NZ2
Length = 105
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 33/64 (51%), Positives = 47/64 (73%)
Query: 67 VLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQV 126
V+ D+ YD++LK+VP YK ++ SV+ +RLK+ GSLAR AL +L + G+I V+KH Q
Sbjct: 40 VILDQEKYDRILKDVPTYKYVSVSVLVDRLKIGGSLARVALRQLEEDGIITPVLKHSKQA 99
Query: 127 IYTR 130
IYTR
Sbjct: 100 IYTR 103
>POMBASE|SPAC694.05c [details] [associations]
symbol:rps2502 "40S ribosomal protein S25 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic
translation" evidence=NAS] [GO:0003735 "structural constituent of
ribosome" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006412 "translation" evidence=ISO] [GO:0022627 "cytosolic
small ribosomal subunit" evidence=ISO] PomBase:SPAC694.05c
Pfam:PF03297 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003735
GO:GO:0002181 GO:GO:0022627 eggNOG:COG4901 HOGENOM:HOG000203673
KO:K02975 InterPro:IPR004977 PANTHER:PTHR12850 ProDom:PD012268
EMBL:AB000398 PIR:T50250 RefSeq:NP_594485.1 IntAct:P79009
STRING:P79009 PRIDE:P79009 EnsemblFungi:SPAC694.05c.1
GeneID:2543307 KEGG:spo:SPAC694.05c OMA:GILCKEV OrthoDB:EOG4X0R34
NextBio:20804324 Uniprot:P79009
Length = 89
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 31/63 (49%), Positives = 49/63 (77%)
Query: 68 LFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVI 127
+FDK+ D++ KEVPA+K I+ SV+ +R+K+ GSLAR A+ +L ++G+I++V +H Q I
Sbjct: 21 VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAI 80
Query: 128 YTR 130
YTR
Sbjct: 81 YTR 83
>POMBASE|SPBC3D6.15 [details] [associations]
symbol:rps2501 "40S ribosomal protein S25 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic
translation" evidence=NAS] [GO:0003735 "structural constituent of
ribosome" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006412 "translation" evidence=ISO] [GO:0022627 "cytosolic
small ribosomal subunit" evidence=ISO] PomBase:SPBC3D6.15
Pfam:PF03297 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003735
GO:GO:0002181 GO:GO:0022627 HOGENOM:HOG000203673 KO:K02975
InterPro:IPR004977 PANTHER:PTHR12850 ProDom:PD012268 OMA:YKMITIS
OrthoDB:EOG4X0R34 EMBL:AB016006 EMBL:AB027855 PIR:T43379
RefSeq:NP_595515.1 STRING:O74172 EnsemblFungi:SPBC3D6.15.1
GeneID:2540965 KEGG:spo:SPBC3D6.15 NextBio:20802080 Uniprot:O74172
Length = 88
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 31/63 (49%), Positives = 49/63 (77%)
Query: 68 LFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVI 127
+FDK+ D++ KEVPA+K I+ SV+ +R+K+ GSLAR A+ +L ++G+I++V +H Q I
Sbjct: 21 VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAI 80
Query: 128 YTR 130
YTR
Sbjct: 81 YTR 83
>UNIPROTKB|G4MKR2 [details] [associations]
symbol:MGG_06657 "40S ribosomal protein S25" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
Pfam:PF03297 GO:GO:0005840 EMBL:CM001231 KO:K02975
InterPro:IPR004977 PANTHER:PTHR12850 ProDom:PD012268
RefSeq:XP_003709364.1 EnsemblFungi:MGG_06657T0 GeneID:2684830
KEGG:mgr:MGG_06657 Uniprot:G4MKR2
Length = 94
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 33/64 (51%), Positives = 45/64 (70%)
Query: 67 VLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQV 126
VL DK + DKL K+V +Y+L+T + + +RLK+ GSLAR+ L +L +KG IK VV H
Sbjct: 25 VLLDKTTSDKLYKDVQSYRLVTIATLVDRLKINGSLARQCLADLEEKGQIKPVVTHSKMK 84
Query: 127 IYTR 130
IYTR
Sbjct: 85 IYTR 88
>ASPGD|ASPL0000058475 [details] [associations]
symbol:AN10130 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] Pfam:PF03297
EMBL:BN001308 GO:GO:0005840 HOGENOM:HOG000203673 InterPro:IPR004977
PANTHER:PTHR12850 ProDom:PD012268 OMA:YKMITIS
EnsemblFungi:CADANIAT00001697 Uniprot:C8VUG3
Length = 92
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 33/69 (47%), Positives = 49/69 (71%)
Query: 67 VLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQV 126
V+ +KA+ ++L K+V +Y+LIT + + +RLK+ GSLARKAL +L +KG IK+VV H
Sbjct: 24 VVLEKATAERLNKDVQSYRLITVATLVDRLKINGSLARKALADLEEKGQIKKVVGHSKMN 83
Query: 127 IYTRTTKGD 135
IYTR +
Sbjct: 84 IYTRAVTAE 92
>GENEDB_PFALCIPARUM|PF14_0205 [details] [associations]
symbol:PF14_0205 "ribosomal protein S25,
putative" species:5833 "Plasmodium falciparum" [GO:0022627
"cytosolic small ribosomal subunit" evidence=ISS] [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] Pfam:PF03297 GO:GO:0006412
GO:GO:0003735 EMBL:AE014187 GO:GO:0022627 HOGENOM:HOG000203673
KO:K02975 InterPro:IPR004977 PANTHER:PTHR12850 ProDom:PD012268
RefSeq:XP_001348379.2 ProteinModelPortal:Q8ILN8 PRIDE:Q8ILN8
EnsemblProtists:PF14_0205:mRNA GeneID:811787 KEGG:pfa:PF14_0205
EuPathDB:PlasmoDB:PF3D7_1421200 ProtClustDB:CLSZ2432694
Uniprot:Q8ILN8
Length = 105
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 63 LNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV-VK 121
LN+ V DK+ + K+L E K+ITPS ++E+ KV S+AR + L K LI +V V+
Sbjct: 36 LNHAVFIDKSLHSKIL-ECKNMKVITPSAIAEKYKVNLSVARAVINHLADKKLIAEVCVQ 94
Query: 122 HHAQVIYTR 130
H+Q +YT+
Sbjct: 95 SHSQKLYTK 103
>UNIPROTKB|Q8ILN8 [details] [associations]
symbol:PF14_0205 "40S ribosomal protein S25, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=ISS] Pfam:PF03297 GO:GO:0006412 GO:GO:0003735
EMBL:AE014187 GO:GO:0022627 HOGENOM:HOG000203673 KO:K02975
InterPro:IPR004977 PANTHER:PTHR12850 ProDom:PD012268
RefSeq:XP_001348379.2 ProteinModelPortal:Q8ILN8 PRIDE:Q8ILN8
EnsemblProtists:PF14_0205:mRNA GeneID:811787 KEGG:pfa:PF14_0205
EuPathDB:PlasmoDB:PF3D7_1421200 ProtClustDB:CLSZ2432694
Uniprot:Q8ILN8
Length = 105
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 63 LNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQV-VK 121
LN+ V DK+ + K+L E K+ITPS ++E+ KV S+AR + L K LI +V V+
Sbjct: 36 LNHAVFIDKSLHSKIL-ECKNMKVITPSAIAEKYKVNLSVARAVINHLADKKLIAEVCVQ 94
Query: 122 HHAQVIYTR 130
H+Q +YT+
Sbjct: 95 SHSQKLYTK 103
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.361 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 139 103 0.00091 102 3 11 23 0.44 30
29 0.49 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 484 (52 KB)
Total size of DFA: 92 KB (2069 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 10.82u 0.09s 10.91t Elapsed: 00:00:01
Total cpu time: 10.82u 0.09s 10.91t Elapsed: 00:00:01
Start: Thu Aug 15 13:40:55 2013 End: Thu Aug 15 13:40:56 2013