RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1871
(139 letters)
>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus
subtilis [TaxId: 1423]}
Length = 78
Score = 27.1 bits (60), Expect = 0.30
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 82 PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQV 126
KL + + +V S K+LE L QKG I QV V
Sbjct: 18 QGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVRGSGIFV 62
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor
FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 74
Score = 26.7 bits (59), Expect = 0.35
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 82 PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQV 126
P L +SE + V + R+ L+ L + G + +V
Sbjct: 23 PGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKV 67
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR,
N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Length = 100
Score = 26.0 bits (57), Expect = 0.85
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 82 PAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQV 126
P L + + + + V +AL L +GL+ V
Sbjct: 29 PGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGALGTVV 73
>d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia
coli [TaxId: 562]}
Length = 368
Score = 26.7 bits (58), Expect = 1.0
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 94 ERLKVRGSLARKALEELLQKGLIKQVVKHHAQV 126
++ + A+ + + G + +VK H ++
Sbjct: 334 RQVVSGLNEAQLMRDFVADGGSLIGLVKKHCEI 366
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III
{Escherichia coli [TaxId: 562]}
Length = 366
Score = 26.8 bits (57), Expect = 1.1
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 76 KLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIY 128
++L + A KL + + G + L +L+Q + ++ +H AQ I
Sbjct: 312 RVLLD--ALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRIL 362
>d1u5ta2 a.4.5.54 (A:165-232) Vacuolar sorting protein SNF8 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 68
Score = 25.1 bits (55), Expect = 1.2
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 87 ITPSVVSERLKVRGSLARKALEELLQKGLI 116
+ S++ L ++ AL+E++ GL+
Sbjct: 18 SSISLLKANLGWEAVRSKSALDEMVANGLL 47
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli
[TaxId: 562]}
Length = 385
Score = 25.7 bits (55), Expect = 2.3
Identities = 11/53 (20%), Positives = 22/53 (41%)
Query: 63 LNNQVLFDKASYDKLLKEVPAYKLITPSVVSERLKVRGSLARKALEELLQKGL 115
LN F + + L EV +V+++ V+ + K +++ GL
Sbjct: 7 LNETAWFGRGAVGALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGL 59
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator
RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Length = 69
Score = 24.3 bits (53), Expect = 2.4
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 93 SERLKVRGSLARKALEELLQKGLIKQVVKHHAQV 126
L V + R+A + L++ L+ + V
Sbjct: 32 CAALDVSRNTVREAFQILIEDRLVAHELNRGVFV 65
>d2e7ga1 d.52.7.1 (A:86-201) Ribosome-binding factor A, RbfA {Human
(Homo sapiens) [TaxId: 9606]}
Length = 116
Score = 24.5 bits (53), Expect = 3.4
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 93 SERLKVRGSLARKALEELLQKGLIKQ 118
RL+ L KAL +LL + Q
Sbjct: 5 HARLRALNGLLYKALTDLLCTPEVSQ 30
>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit
{Acidaminococcus fermentans [TaxId: 905]}
Length = 287
Score = 24.9 bits (53), Expect = 3.9
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 38 QKKKEGGSGGKAKKKKWSKGK--VRDKLNNQVLFDKASY 74
Q KE GKA +G+ ++ L + S+
Sbjct: 39 QLIKEAQEAGKADADVNKRGELTALQRIEK--LVEPGSW 75
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator
TM0816 {Thermotoga maritima [TaxId: 2336]}
Length = 140
Score = 24.2 bits (52), Expect = 5.2
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQ--VIYTRTTKG 134
++E L S ++ L ++GL+ + + + T KG
Sbjct: 47 KKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKG 96
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 85
Score = 23.0 bits (49), Expect = 8.4
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 87 ITPSVVSERLKVRGSLARKALEELLQKGLIKQVVKHHAQVIYTRTTKG 134
+T S +++ L + A + + +L + G I + I T KG
Sbjct: 22 LTSSKLADMLGISQQSASRIIIDLEKNGYITR-TVTKRGQILNITEKG 68
>d2dk5a1 a.4.5.85 (A:8-85) DNA-directed RNA polymerase III subunit
RPC6, RPO3F {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 22.7 bits (49), Expect = 10.0
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 104 RKALEELLQKGLIKQV--VKHHAQVIY 128
K L+ L K LIK V V + +Y
Sbjct: 47 NKILKNLESKKLIKAVKSVAASKKKVY 73
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.309 0.128 0.353
Gapped
Lambda K H
0.267 0.0579 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 478,924
Number of extensions: 20516
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 26
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 48 (22.6 bits)