BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1873
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 219 bits (559), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 104/155 (67%), Positives = 127/155 (81%), Gaps = 13/155 (8%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+GYRSVGKSSL+IQFV+GQFVDSYDPTIENTF K +N Q+Y L+LVDTAGQDEYSIFP
Sbjct: 12 LGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP 71
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
YS+DI+GY+LVYS+TS KSFEV+++++ KLLDM GK+Q PI+LVG
Sbjct: 72 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-------------IPIMLVG 118
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
NKKDLHMER+ISY+EGK LAESW A F+E+SAK++
Sbjct: 119 NKKDLHMERVISYEEGKALAESWNAAFLESSAKEN 153
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 219 bits (558), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 104/155 (67%), Positives = 127/155 (81%), Gaps = 13/155 (8%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+GYRSVGKSSL+IQFV+GQFVDSYDPTIENTF K +N Q+Y L+LVDTAGQDEYSIFP
Sbjct: 12 LGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP 71
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
YS+DI+GY+LVYS+TS KSFEV+++++ KLLDM GK+Q PI+LVG
Sbjct: 72 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-------------IPIMLVG 118
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
NKKDLHMER+ISY+EGK LAESW A F+E+SAK++
Sbjct: 119 NKKDLHMERVISYEEGKALAESWNAAFLESSAKEN 153
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 219 bits (558), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 104/155 (67%), Positives = 127/155 (81%), Gaps = 13/155 (8%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+GYRSVGKSSL+IQFV+GQFVDSYDPTIENTF K +N Q+Y L+LVDTAGQDEYSIFP
Sbjct: 7 LGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP 66
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
YS+DI+GY+LVYS+TS KSFEV+++++ KLLDM GK+Q PI+LVG
Sbjct: 67 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-------------IPIMLVG 113
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
NKKDLHMER+ISY+EGK LAESW A F+E+SAK++
Sbjct: 114 NKKDLHMERVISYEEGKALAESWNAAFLESSAKEN 148
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 217 bits (552), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 103/155 (66%), Positives = 126/155 (81%), Gaps = 13/155 (8%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+GYRSVGKSSL+IQFV+GQFVDS DPTIENTF K +N Q+Y L+LVDTAGQDEYSIFP
Sbjct: 10 LGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP 69
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
YS+DI+GY+LVYS+TS KSFEV+++++ KLLDM GK+Q PI+LVG
Sbjct: 70 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ-------------IPIMLVG 116
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
NKKDLHMER+ISY+EGK LAESW A F+E+SAK++
Sbjct: 117 NKKDLHMERVISYEEGKALAESWNAAFLESSAKEN 151
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 161 bits (407), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 106/156 (67%), Gaps = 13/156 (8%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+GYR VGK+SL+ QFV+G+F + YDPT+ENT+ K + ++ L LVDTAGQDEYSI P
Sbjct: 30 LGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILP 89
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
+ + +HGYVLVYS+TS SF+V++ LY KL + GK + P+VLVG
Sbjct: 90 YSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTR-------------VPVVLVG 136
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
NK DL ER + EGK+LAESW A F+E+SA+++
Sbjct: 137 NKADLSPEREVQAVEGKKLAESWGATFMESSARENQ 172
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 91/154 (59%), Gaps = 14/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G VGKS+L++QFV G FVD YDPTIE+++ K ++ Q L+++DTAG ++++
Sbjct: 9 LGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMR 68
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
Y + G+ LVYSIT+ +F +Q L +++L + P++LVG
Sbjct: 69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV-------------KDTEDVPMILVG 115
Query: 121 NKKDLHMERMISYDEGKRLAESW-KAGFVEASAK 153
NK DL ER++ ++G+ LA W F+E+SAK
Sbjct: 116 NKCDLEDERVVGKEQGQNLARQWCNCAFLESSAK 149
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 107 bits (266), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 91/154 (59%), Gaps = 14/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G VGKS+L++QFV G FV+ YDPTIE+++ K ++ Q L+++DTAG ++++
Sbjct: 9 LGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMR 68
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
Y + G+ LVYSIT+ +F +Q L +++L + P++LVG
Sbjct: 69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK-------------DTEDVPMILVG 115
Query: 121 NKKDLHMERMISYDEGKRLAESW-KAGFVEASAK 153
NK DL ER++ ++G+ LA W F+E+SAK
Sbjct: 116 NKCDLEDERVVGKEQGQNLARQWCNCAFLESSAK 149
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 106 bits (264), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 91/154 (59%), Gaps = 14/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G VGKS+L++QFV G FV+ YDPTIE+++ K ++ Q L+++DTAG ++++
Sbjct: 9 LGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMR 68
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
Y + G+ LVYSIT+ +F +Q L +++L + P++LVG
Sbjct: 69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRV-------------KDTDDVPMILVG 115
Query: 121 NKKDLHMERMISYDEGKRLAESW-KAGFVEASAK 153
NK DL ER++ ++G+ LA W F+E+SAK
Sbjct: 116 NKCDLEDERVVGKEQGQNLARQWNNCAFLESSAK 149
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 106 bits (264), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 91/154 (59%), Gaps = 14/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G VGKS+L++QFV G FV+ YDPTIE+++ K ++ Q L+++DTAG ++++
Sbjct: 11 LGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMR 70
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
Y + G+ LVYSIT+ +F +Q L +++L + P++LVG
Sbjct: 71 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK-------------DTDDVPMILVG 117
Query: 121 NKKDLHMERMISYDEGKRLAESW-KAGFVEASAK 153
NK DL ER++ ++G+ LA W F+E+SAK
Sbjct: 118 NKCDLEDERVVGKEQGQNLARQWNNCAFLESSAK 151
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 87/155 (56%), Gaps = 18/155 (11%)
Query: 2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPA 61
G VGKSSL ++FV G F +SY PT+E+T+ + + L++ DT G + FPA
Sbjct: 10 GAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ---FPA 66
Query: 62 QYSMDI---HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
+ I H ++LVYSITS +S E ++ +Y+++ ++ G +++ PI+L
Sbjct: 67 MQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES------------IPIML 114
Query: 119 VGNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
VGNK D R + E + LA +WK F+E SAK
Sbjct: 115 VGNKCDESPSREVQSSEAEALARTWKCAFMETSAK 149
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 99.4 bits (246), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 85/146 (58%), Gaps = 13/146 (8%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQF+ FV YDPTIE+++ K ++++ L ++DTAGQ+E+ QY
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTG 77
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++LV+S+T SFE + ++L + + P++L+GNK DL
Sbjct: 78 EGFLLVFSVTDRGSFEEIYKFQRQILRVKDR-------------DEFPMILIGNKADLDH 124
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
+R ++ +EG++LA K ++EASAK
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAK 150
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 84/146 (57%), Gaps = 13/146 (8%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQF FVD YDPTIE++++K T ++NQ L ++DTAGQ+E+S QY
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G+++VYS+T SFE V + +L + + P++LV NK DL
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDR-------------ESFPMILVANKVDLMH 137
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R ++ D+GK +A + ++E SAK
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAK 163
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 83/146 (56%), Gaps = 13/146 (8%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQF FVD YDPTIE+++ K T ++NQ L ++DTAGQ+E+S QY
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G+++VYS+T SFE V + +L + + P++LV NK DL
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDR-------------ESFPMILVANKVDLMH 137
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R ++ D+GK +A + ++E SAK
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAK 163
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 95.9 bits (237), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 13/146 (8%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQF FV YDPTIE++++K T ++NQ L ++DTAGQ+E+S QY
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G+++VYS+T SFE V + +L + + P++LV NK DL
Sbjct: 91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDR-------------ESFPMILVANKVDLMH 137
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R ++ D+GK +A + ++E SAK
Sbjct: 138 LRKVTRDQGKEMATKYNIPYIETSAK 163
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 95.9 bits (237), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 13/146 (8%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQF FV YDPTIE++++K T ++NQ L ++DTAGQ+E+S QY
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 85
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G+++VYS+T SFE V + +L + + P++LV NK DL
Sbjct: 86 DGFLIVYSVTDKASFEHVDRFHQLILRVKDR-------------ESFPMILVANKVDLMH 132
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R ++ D+GK +A + ++E SAK
Sbjct: 133 LRKVTRDQGKEMATKYNIPYIETSAK 158
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 93.6 bits (231), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 77/146 (52%), Gaps = 13/146 (8%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQF+ FV YDPTIE+++ K ++ L ++DTAGQ+E+ QY
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
HG++LV++I +SF V L+ ++L + + P+VLVGNK DL
Sbjct: 82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDR-------------DDFPVVLVGNKADLES 128
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
+R + E S + EASAK
Sbjct: 129 QRQVPRSEASAFGASHHVAYFEASAK 154
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 93.6 bits (231), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 81/153 (52%), Gaps = 14/153 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G R VGKS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAGQ+EYS
Sbjct: 9 VGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
QY G++ V++I + KSFE + Q P+VLVG
Sbjct: 69 DQYMRTGEGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVG 115
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
NK DL R + + + LA S+ ++E SAK
Sbjct: 116 NKCDL-AARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 92.4 bits (228), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 83/153 (54%), Gaps = 13/153 (8%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G VGKS+L++QF+ +FV+ Y+PT +++ K ++ ++ + ++DTAGQ++Y+
Sbjct: 20 VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIR 79
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
Y G++ V+SIT +SF +++L + P +LVG
Sbjct: 80 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVK-------------EDENVPFLLVG 126
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
NK DL +R +S +E K AE W +VE SAK
Sbjct: 127 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAK 159
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 92.4 bits (228), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 83/153 (54%), Gaps = 13/153 (8%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G VGKS+L++QF+ +FV+ Y+PT +++ K ++ ++ + ++DTAGQ++Y+
Sbjct: 24 VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIR 83
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
Y G++ V+SIT +SF +++L + P +LVG
Sbjct: 84 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVK-------------EDENVPFLLVG 130
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
NK DL +R +S +E K AE W +VE SAK
Sbjct: 131 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAK 163
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 92.4 bits (228), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 83/153 (54%), Gaps = 13/153 (8%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G VGKS+L++QF+ +FV+ Y+PT +++ K ++ ++ + ++DTAGQ++Y+
Sbjct: 12 VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIR 71
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
Y G++ V+SIT +SF +++L + P +LVG
Sbjct: 72 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVK-------------EDENVPFLLVG 118
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
NK DL +R +S +E K AE W +VE SAK
Sbjct: 119 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAK 151
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 82/153 (53%), Gaps = 14/153 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G VGKS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAGQ+EYS
Sbjct: 10 VGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 69
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
QY G++ V++I + KSFE + +++ P+VLVG
Sbjct: 70 DQYMRTGEGFLCVFAINNTKSFEDIHHYREQI-------------KRVKDSEDVPMVLVG 116
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
NK DL R + + + LA S+ F+E SAK
Sbjct: 117 NKSDLP-SRTVDTKQAQDLARSYGIPFIETSAK 148
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 87/146 (59%), Gaps = 13/146 (8%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L++QFV G F++ YDPTIE+ + K +++ L+++DTAG ++++ Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++LVYS+ + +SF+ ++ + D+++ + P++LVGNK DL
Sbjct: 76 QGFILVYSLVNQQSFQDIKPMRDQIIRV-------------KRYEKVPVILVGNKVDLES 122
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
ER +S EG+ LAE W F+E SAK
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAK 148
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 84/153 (54%), Gaps = 12/153 (7%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G VGKS+L++QF+ +FV+ Y+PT +++ K ++ ++ + ++DTAG ++Y+
Sbjct: 13 VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIR 72
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
Y G++LV+SIT H+SF +++L + + P+++VG
Sbjct: 73 DNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAE------------EDKIPLLVVG 120
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
NK DL R + +E + AE W +VE SAK
Sbjct: 121 NKSDLEERRQVPVEEARSKAEEWGVQYVETSAK 153
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 84/153 (54%), Gaps = 12/153 (7%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G VGKS+L++QF+ +FV+ Y+PT +++ K ++ ++ + ++DTAG ++Y+
Sbjct: 9 VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIR 68
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
Y G++LV+SIT H+SF +++L + + P+++VG
Sbjct: 69 DNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAE------------EDKIPLLVVG 116
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
NK DL R + +E + AE W +VE SAK
Sbjct: 117 NKSDLEERRQVPVEEARSKAEEWGVQYVETSAK 149
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 82/153 (53%), Gaps = 14/153 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G VGKS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAGQ+EYS
Sbjct: 10 VGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 69
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
QY G++ V++I + KSFE + +++ P+VLVG
Sbjct: 70 DQYMRTGEGFLCVFAINNTKSFEDIHHYREQI-------------KRVKDSEDVPMVLVG 116
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
NK DL R + + + LA S+ F+E SAK
Sbjct: 117 NKCDLP-SRTVDTKQAQDLARSYGIPFIETSAK 148
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 90.5 bits (223), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 83/153 (54%), Gaps = 13/153 (8%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G VGKS+L++QF+ +FV+ Y+PT +++ K ++ ++ + ++DTAGQ++Y+
Sbjct: 10 VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIR 69
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
Y G++ V+SIT +SF +++L + P +LVG
Sbjct: 70 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVK-------------EDENVPFLLVG 116
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
NK DL +R +S +E K A+ W +VE SAK
Sbjct: 117 NKSDLEDKRQVSVEEAKNRADQWNVNYVETSAK 149
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 83/151 (54%), Gaps = 19/151 (12%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KSSL ++FV G F D+Y PTIE+T+ + + L++ DT G + FPA + I
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQ---FPAMQRLSI 77
Query: 68 ---HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKD 124
H ++LV+S+TS +S E + +Y ++ + G +++ P++LVGNK D
Sbjct: 78 SKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVED------------IPVMLVGNKCD 125
Query: 125 LHMERMISYDEGKRLAESWKAGFVEASAKQD 155
+R + E + +A+ WK F+E SAK +
Sbjct: 126 -ETQREVDTREAQAVAQEWKCAFMETSAKMN 155
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 80/153 (52%), Gaps = 14/153 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G VGKS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAGQ+EYS
Sbjct: 9 VGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
QY G++ V++I + KSFE + Q P+VLVG
Sbjct: 69 DQYMRTGEGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVG 115
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
NK DL R + + + LA S+ ++E SAK
Sbjct: 116 NKCDL-AARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 90.1 bits (222), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 80/153 (52%), Gaps = 14/153 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G VGKS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAGQ+EYS
Sbjct: 9 VGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
QY G++ V++I + KSFE + Q P+VLVG
Sbjct: 69 DQYMRTGEGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVG 115
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
NK DL R + + + LA S+ ++E SAK
Sbjct: 116 NKCDL-AARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 89.7 bits (221), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 80/153 (52%), Gaps = 14/153 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G VGKS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAGQ+EYS
Sbjct: 9 VGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
QY G++ V++I + KSFE + Q P+VLVG
Sbjct: 69 DQYMRTGEGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVG 115
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
NK DL R + + + LA S+ ++E SAK
Sbjct: 116 NKCDL-AGRTVESRQAQDLARSYGIPYIETSAK 147
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 89.4 bits (220), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 82/153 (53%), Gaps = 13/153 (8%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G VGKS+L++QF+ +FV+ Y+PT +++ K ++ ++ + ++DTAG ++Y+
Sbjct: 12 VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIR 71
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
Y G++ V+SIT +SF +++L + P +LVG
Sbjct: 72 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVK-------------EDENVPFLLVG 118
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
NK DL +R +S +E K AE W +VE SAK
Sbjct: 119 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAK 151
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 86.7 bits (213), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 78/146 (53%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAGQ+EYS QY
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + +++ P+VLVGNK DL
Sbjct: 77 EGFLCVFAINNTKSFEDIHHYREQI-------------KRVKDSEDVPMVLVGNKSDLP- 122
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ F+E SAK
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAK 148
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 86.7 bits (213), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 78/146 (53%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAGQ+EYS QY
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + +++ P+VLVGNK DL
Sbjct: 77 EGFLCVFAINNTKSFEDIHHYREQI-------------KRVKDSEDVPMVLVGNKSDLP- 122
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ F+E SAK
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAK 148
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 85.9 bits (211), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAGQ+EYS QY
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSF + + +++ P+VLVGNK DL
Sbjct: 94 EGFLCVFAINNSKSFADINLYREQI-------------KRVKDSDDVPMVLVGNKCDLPT 140
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + LA+S+ F+E SAK
Sbjct: 141 -RTVDTKQAHELAKSYGIPFIETSAK 165
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAGQ+EYS QY
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKSDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAGQ+EYS QY
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAGQ+EYS QY
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 81 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 126
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAK 152
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAGQ+EYS QY
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 81 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 126
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAK 152
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAGQ+EYS QY
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAGQ+EYS QY
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAGQ+EYS QY
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAGQ+EYS QY
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAGQ+EYS QY
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAGQ+EYS QY
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 82
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 83 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 128
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 129 ARTVESRQAQDLARSYGIPYIETSAK 154
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAGQ+EYS QY
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE ++ K ++ + L ++DTAGQ+EYS QY
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAGQ+EYS QY
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGN+ DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNRCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAGQ+EYS QY
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 81/146 (55%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAG +EYS QY
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 93
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + +++ ++++ P+VLVGNK DL
Sbjct: 94 EGFLCVFAINNTKSFEDIHHYREQI----KRVKD---------SEDVPMVLVGNKCDL-P 139
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ F+E SAK
Sbjct: 140 SRTVDTKQAQDLARSYGIPFIETSAK 165
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 84/151 (55%), Gaps = 14/151 (9%)
Query: 2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPA 61
G VGKS+L ++F+ +F+ YDPT+E+T+ ++++ ++++DTAGQ++ +I
Sbjct: 35 GRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQRE 93
Query: 62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGN 121
+ G+VLVY IT SFE V L + +LD K +N ++LVGN
Sbjct: 94 GHMRWGEGFVLVYDITDRGSFEEVLPLKN-ILDEIKKPKN------------VTLILVGN 140
Query: 122 KKDLHMERMISYDEGKRLAESWKAGFVEASA 152
K DL R +S +EG++LA F E SA
Sbjct: 141 KADLDHSRQVSTEEGEKLATELACAFYECSA 171
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 84.0 bits (206), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
K++L+IQ + FVD YDPTIE+++ K ++ + L ++DTAGQ+EYS QY
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAGQ+EYS +Y
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD +DPTIE+++ K ++ + L ++DTAGQ+EYS QY
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDP+IE+++ K ++ + L ++DTAGQ+EYS QY
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDP+IE+++ K ++ + L ++DTAGQ+EYS QY
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 81
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 82 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 127
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 128 ARTVESRQAQDLARSYGIPYIETSAK 153
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DT GQ+EYS QY
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAG++EYS QY
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 83.6 bits (205), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FV+ YDPTIE+++ K ++ + L ++DTAGQ+EYS QY
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DT GQ+EYS QY
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 83.2 bits (204), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTA Q+EYS QY
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKXDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 83.2 bits (204), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAG +EYS QY
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 83.2 bits (204), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTA Q+EYS QY
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKXDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 82.8 bits (203), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD DPTIE+++ K ++ + L ++DTAGQ+EYS QY
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKSDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAG +EYS QY
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 80
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 81 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 126
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 127 ARTVESRQAQDLARSYGIPYIETSAK 152
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAG +EYS QY
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAGQ+E S QY
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAG +EYS QY
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAG +EYS QY
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAG +EYS QY
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)
Query: 8 KSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67
KS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAG +EYS QY
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTG 75
Query: 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKKDLHM 127
G++ V++I + KSFE + Q P+VLVGNK DL
Sbjct: 76 EGFLCVFAINNTKSFEDIH-------------QYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 128 ERMISYDEGKRLAESWKAGFVEASAK 153
R + + + LA S+ ++E SAK
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAK 147
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 15/155 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS L ++F D + DSY TI F ++T + N+ L++ DTAGQ+ +
Sbjct: 15 IGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTI 74
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ Y HG ++VY +T SF+ V+ ++ + N +LV
Sbjct: 75 TSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNK--------------LLV 120
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
GNK DL +R+++ DEG+ LA+S F+E SAK
Sbjct: 121 GNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKN 155
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 15/156 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G SVGK+S ++ D F ++ T+ F VKT N++ L++ DTAGQ+ Y
Sbjct: 11 IGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTI 70
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y G++L+Y IT+ +SF VQ D + +I+ ++LV
Sbjct: 71 TTAYYRGAMGFILMYDITNEESFNAVQ-------DWSTQIKT-------YSWDNAQVLLV 116
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
GNK D+ ER++S + G++LA+ F EASAK +
Sbjct: 117 GNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDN 152
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 80/156 (51%), Gaps = 15/156 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G SVGK+S ++ D F ++ T+ F VKT +++ L++ DTAGQ+ Y
Sbjct: 28 IGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI 87
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y G++L+Y I + +SF VQ D +I+ ++LV
Sbjct: 88 TTAYYRGAMGFLLMYDIANQESFAAVQ-------DWATQIKTYSWDNAQ-------VILV 133
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
GNK DL ER++ ++G+RLA+ F EASAK++
Sbjct: 134 GNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKEN 169
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 75.9 bits (185), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 15/156 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G SVGK+S ++ D F ++ T+ F VKT + + L++ DTAGQ+ Y
Sbjct: 29 IGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTI 88
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y G++L+Y IT+ +SF VQ D +I+ ++LV
Sbjct: 89 TTAYYRGAMGFILMYDITNEESFNAVQ-------DWATQIKT-------YSWDNAQVILV 134
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
GNK D+ ER++ ++G+ LAE F EASAK++
Sbjct: 135 GNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKEN 170
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 77/156 (49%), Gaps = 15/156 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGK+SL +++ + +F D + T++ +F+ K + + +L + DTAGQ+ +
Sbjct: 12 LGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHAL 71
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y D +G +LVY IT SF+ V+ +L M G + +V
Sbjct: 72 GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN--------------EICLCIV 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
GNK DL ER +S E + AES A SAKQ+
Sbjct: 118 GNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQN 153
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 16/157 (10%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS L ++FV+ +F S+ TI F +KT +N + L+L DTAGQ+ +
Sbjct: 13 IGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI 72
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y G +LVY +T ++F I+ ++LV
Sbjct: 73 TTAYYRGAMGIILVYDVTDERTFT--------------NIKQWFKTVNEHANDEAQLLLV 118
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
GNK D+ R+++ D+G+ LA+ F+E+SAK DD
Sbjct: 119 GNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDD 154
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 16/157 (10%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS L ++FV+ +F S+ TI F +KT +N + L+L DTAGQ+ +
Sbjct: 26 IGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI 85
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y G +LVY +T ++F ++ + + ++LV
Sbjct: 86 TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV--------------NEHANDEAQLLLV 131
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
GNK D+ R+++ D+G+ LA+ F+E+SAK DD
Sbjct: 132 GNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDD 167
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 77/156 (49%), Gaps = 15/156 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGK+SL +++ + +F D + T++ +F+ K + + +L + DTAGQ+ +
Sbjct: 26 LGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHAL 85
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y D +G +LVY IT SF+ V+ +L M G + +V
Sbjct: 86 GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN--------------EICLCIV 131
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
GNK DL ER +S E + AES A SAKQ+
Sbjct: 132 GNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQN 167
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 16/157 (10%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS L ++FV+ +F S+ TI F +KT +N + L++ DTAGQ+ +
Sbjct: 9 IGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI 68
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y G +LVY IT ++F I+ ++LV
Sbjct: 69 TTAYYRGAMGIILVYDITDERTFT--------------NIKQWFKTVNEHANDEAQLLLV 114
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
GNK D+ R+++ D+G+ LA+ F+E+SAK DD
Sbjct: 115 GNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDD 150
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 16/157 (10%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS L ++FV+ +F S+ TI F +KT +N + L+L DTAGQ+ +
Sbjct: 9 IGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI 68
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y G +LVY +T ++F I+ ++LV
Sbjct: 69 TTAYYRGAXGIILVYDVTDERTFT--------------NIKQWFKTVNEHANDEAQLLLV 114
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
GNK D R+++ D+G+ LA+ F+E+SAK DD
Sbjct: 115 GNKSDXET-RVVTADQGEALAKELGIPFIESSAKNDD 150
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 73.2 bits (178), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 76/156 (48%), Gaps = 15/156 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGK+SL +++ + +F D + T+ +F+ K + + +L + DTAGQ+ +
Sbjct: 12 LGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHAL 71
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y D +G +LVY IT SF+ V+ +L M G + +V
Sbjct: 72 GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN--------------EICLCIV 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
GNK DL ER +S E + AES A SAKQ+
Sbjct: 118 GNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQN 153
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 16/157 (10%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS L ++FV+ +F S+ TI F +KT +N + L++ DTAGQ+ +
Sbjct: 9 IGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI 68
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y G +LVY IT ++F I+ ++LV
Sbjct: 69 TTAYYRGAXGIILVYDITDERTFT--------------NIKQWFKTVNEHANDEAQLLLV 114
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
GNK D R+++ D+G+ LA+ F+E+SAK DD
Sbjct: 115 GNKSDXET-RVVTADQGEALAKELGIPFIESSAKNDD 150
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G SVGK+S ++ D F ++ T+ F VKT N++ L++ DTAG + Y
Sbjct: 14 IGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTI 73
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y G++L Y IT+ +SF VQ D + +I+ ++LV
Sbjct: 74 TTAYYRGAXGFILXYDITNEESFNAVQ-------DWSTQIKTYSWDNAQ-------VLLV 119
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK D ER++S + G++LA+ F EASAK
Sbjct: 120 GNKCDXEDERVVSSERGRQLADHLGFEFFEASAK 153
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 15/153 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS L ++F D + + Y TI F +KT ++ + L++ DTAGQ+ +
Sbjct: 14 IGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI 73
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ Y HG ++VY +T +SF V++ ++ +LV
Sbjct: 74 TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--------------DRYATSTVLKLLV 119
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
GNK DL +R++ YD K A++ K F+E SA
Sbjct: 120 GNKCDLKDKRVVEYDVAKEFADANKMPFLETSA 152
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 15/153 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS L ++F D + + Y TI F +KT ++ + L++ DTAGQ+ +
Sbjct: 14 IGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI 73
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ Y HG ++VY +T +SF V++ ++ +LV
Sbjct: 74 TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--------------DRYATSTVLKLLV 119
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
GNK DL +R++ YD K A++ K F+E SA
Sbjct: 120 GNKCDLKDKRVVEYDVAKEFADANKMPFLETSA 152
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 15/153 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS L ++F D + + Y TI F +KT ++ + L++ DTAGQ+ +
Sbjct: 27 IGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI 86
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ Y HG ++VY +T +SF V++ ++ +LV
Sbjct: 87 TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--------------DRYATSTVLKLLV 132
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
GNK DL +R++ YD K A++ K F+E SA
Sbjct: 133 GNKCDLKDKRVVEYDVAKEFADANKMPFLETSA 165
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 16/156 (10%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G +VGKSS+ ++ G F Y TI F+ + ++N++D L L DTAGQ+E+
Sbjct: 11 VGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI 70
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y VLV+S T +SFE + +K++ G I P LV
Sbjct: 71 TKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDI---------------PTALV 115
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
NK DL + I +E + LA+ K F S K+D
Sbjct: 116 QNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKED 151
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS L ++F D + +SY TI F ++T ++ + L++ DTAGQ+ +
Sbjct: 39 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 98
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ Y HG ++VY +T +SF V+ ++ + N +LV
Sbjct: 99 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK--------------LLV 144
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
GNK DL ++++ Y K A+S F+E SAK
Sbjct: 145 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKN 179
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS L ++F D + +SY TI F ++T ++ + L++ DTAGQ+ +
Sbjct: 12 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 71
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ Y HG ++VY +T +SF V+ ++ + N +LV
Sbjct: 72 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK--------------LLV 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL ++++ Y K A+S F+E SAK
Sbjct: 118 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAK 151
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS L ++F D + +SY TI F ++T ++ + L++ DTAGQ+ +
Sbjct: 31 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 90
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ Y HG ++VY +T +SF V+ ++ + N +LV
Sbjct: 91 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK--------------LLV 136
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
GNK DL ++++ Y K A+S F+E SAK
Sbjct: 137 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKN 171
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS L ++F D + +SY TI F ++T ++ + L++ DTAGQ+ +
Sbjct: 5 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 64
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ Y HG ++VY +T +SF V+ ++ + N +LV
Sbjct: 65 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK--------------LLV 110
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL ++++ Y K A+S F+E SAK
Sbjct: 111 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAK 144
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS L ++F D + +SY TI F ++T ++ + L++ DTAGQ+ +
Sbjct: 12 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 71
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ Y HG ++VY +T +SF V+ ++ + N +LV
Sbjct: 72 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK--------------LLV 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL ++++ Y K A+S F+E SAK
Sbjct: 118 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAK 151
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G +SVGK+SL +F+ F ++Y TI F+ KT + ++ L+L DTAGQ+ +
Sbjct: 12 LGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSL 71
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y D V+VY IT+ SF+ D + G I+LV
Sbjct: 72 IPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS--------------DVIIMLV 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL +R +S +EG+R A+ F+E SAK
Sbjct: 118 GNKTDLADKRQVSIEEGERKAKELNVMFIETSAK 151
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS L ++F D + +SY TI F ++T ++ + L++ DTAGQ+ +
Sbjct: 22 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 81
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ Y HG ++VY +T +SF V+ ++ + N +LV
Sbjct: 82 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK--------------LLV 127
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
GNK DL ++++ Y K A+S F+E SAK
Sbjct: 128 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKN 162
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGK+ L ++F D + +SY TI F ++T ++ + L++ DTAGQ+ +
Sbjct: 22 IGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 81
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ Y HG ++VY +T +SF V+ ++ + N +LV
Sbjct: 82 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK--------------LLV 127
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
GNK DL ++++ Y K A+S F+E SAK
Sbjct: 128 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKN 162
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G +SVGK+SL +F+ F ++Y TI F+ KT + ++ L+L DTAGQ+ +
Sbjct: 7 LGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 66
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y D V+VY IT+ SF+ D + G I+LV
Sbjct: 67 IPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGS--------------DVIIMLV 112
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL +R +S +EG+R A+ F+E SAK
Sbjct: 113 GNKTDLADKRQVSIEEGERKAKELNVMFIETSAK 146
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 76/154 (49%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G +SVGK+SL +F+ F ++Y TI F+ KT + ++ L+L DTAGQ+ +
Sbjct: 20 LGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 79
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y D V+VY IT+ SF D + G I+LV
Sbjct: 80 IPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS--------------DVIIMLV 125
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL +R +S +EG+R A+ F+E SAK
Sbjct: 126 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 159
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 69.3 bits (168), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 76/154 (49%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G ++VGK+S+ +F F ++Y TI F+ KT ++ L+L DTAGQ+ +
Sbjct: 7 LGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSL 66
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y D ++VY IT+ +SFE +L+ GK I LV
Sbjct: 67 IPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGK--------------DVIIALV 112
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL R ++Y+EG + A+ + F E SAK
Sbjct: 113 GNKTDLGDLRKVTYEEGXQKAQEYNTXFHETSAK 146
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 16/155 (10%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G R VGK+SL +F D F ++ T+ F +KT + + L++ DTAGQ+ ++
Sbjct: 32 IGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSI 91
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ Y G +LVY IT ++F+ + K + M K + ++LV
Sbjct: 92 TSAYYRSAKGIILVYDITKKETFDDLP----KWMKMIDKYASEDAE----------LLLV 137
Query: 120 GNKKDLHMERMISYDEGKRLAESWKA-GFVEASAK 153
GNK D +R I+ +G++ A+ F EASAK
Sbjct: 138 GNKLDCETDREITRQQGEKFAQQITGMRFCEASAK 172
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G +SVGK+SL +F+ F ++Y TI F+ KT + ++ L+L DTAG + +
Sbjct: 19 LGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSL 78
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y D V+VY IT+ SF+ D + G I+LV
Sbjct: 79 IPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS--------------DVIIMLV 124
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL +R +S +EG+R A+ F+E SAK
Sbjct: 125 GNKTDLADKRQVSIEEGERKAKELNVMFIETSAK 158
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 73/154 (47%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G +VGKSSL ++FV GQF + + TI F+ ++ +++ ++ DTAGQ+ Y
Sbjct: 14 LGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSL 73
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y ++VY IT+ ++F + +L I L
Sbjct: 74 APMYYRGAQAAIVVYDITNQETFARAKTWVKEL--------------QRQASPSIVIALA 119
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL +RM+ Y+E + A+ F+E SAK
Sbjct: 120 GNKADLANKRMVEYEEAQAYADDNSLLFMETSAK 153
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 77/154 (50%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G +SVGK+SL +F+ F ++Y TI F+ KT + ++ L+L DTAGQ+ +
Sbjct: 8 LGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 67
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y D V+VY IT+ SF+ D + G I+LV
Sbjct: 68 IPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGS--------------DVIIMLV 113
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL +R I+ +EG++ A+ F+E SAK
Sbjct: 114 GNKTDLADKRQITIEEGEQRAKELSVMFIETSAK 147
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS L ++F D + +SY TI F ++T ++ + L++ DTAGQ+ +
Sbjct: 14 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 73
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ Y HG ++VY +T +SF V+ ++ + N +LV
Sbjct: 74 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK--------------LLV 119
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
G K DL ++++ Y K A+S F+E SAK
Sbjct: 120 GIKCDLTTKKVVDYTTAKEFADSLGIPFLETSAK 153
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G +SVGK+SL +F+ F ++Y TI F+ KT + ++ L+L DTAG + +
Sbjct: 12 LGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSL 71
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y D V+VY IT+ SF+ D + G I+LV
Sbjct: 72 IPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG--------------SDVIIMLV 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL +R +S +EG+R A+ F+E SAK
Sbjct: 118 GNKTDLADKRQVSIEEGERKAKELNVMFIETSAK 151
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G +VGKSSL ++FV GQF + + TI+ F+ +T +++ ++ DTAGQ+ Y
Sbjct: 11 LGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 70
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y ++VY IT+ +F + +N I L
Sbjct: 71 APMYYRGAQAAIVVYDITNTDTF--------------ARAKNWVKELQRQASPNIVIALA 116
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL +R + + E + A+ F+E SAK
Sbjct: 117 GNKADLASKRAVEFQEAQAYADDNSLLFMETSAK 150
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS L ++F D + +SY TI F ++T ++ + L++ DTAGQ+ +
Sbjct: 15 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 74
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ Y HG ++VY +T +S+ V+ ++ + N +LV
Sbjct: 75 TSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNK--------------LLV 120
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL ++++ K A+S F+E SAK
Sbjct: 121 GNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAK 154
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS L ++F D + +SY TI F ++T ++ + L++ DTAGQ+ +
Sbjct: 15 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 74
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ Y HG ++VY +T +S+ V+ ++ + N +LV
Sbjct: 75 TSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNK--------------LLV 120
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL ++++ K A+S F+E SAK
Sbjct: 121 GNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAK 154
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G +SVGK+SL +F+ F ++Y TI F+ KT + ++ L+L DTAG + +
Sbjct: 22 LGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSL 81
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y D V+VY IT+ SF+ D + G I+LV
Sbjct: 82 IPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGS--------------DVIIMLV 127
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL +R +S +EG+R A+ F+E SAK
Sbjct: 128 GNKTDLADKRQVSIEEGERKAKELNVMFIETSAK 161
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G +VGKSSL ++FV GQF + + TI F+ +T +++ ++ DTAGQ+ Y
Sbjct: 13 LGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 72
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y ++VY IT+ +SF + +N I L
Sbjct: 73 APMYYRGAQAAIVVYDITNEESF--------------ARAKNWVKELQRQASPNIVIALS 118
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL +R + + E + A+ F+E SAK
Sbjct: 119 GNKADLANKRAVDFQEAQSYADDNSLLFMETSAK 152
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G +VGKSSL ++FV GQF + + TI F+ +T +++ ++ DTAGQ+ Y
Sbjct: 12 LGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 71
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y ++VY IT+ +SF + +N I L
Sbjct: 72 APMYYRGAQAAIVVYDITNEESF--------------ARAKNWVKELQRQASPNIVIALS 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL +R + + E + A+ F+E SAK
Sbjct: 118 GNKADLANKRAVDFQEAQSYADDNSLLFMETSAK 151
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 18/160 (11%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G +VGKSS+ ++FV F ++ +PTI F+ + +N ++ DTAGQ+ ++
Sbjct: 9 LGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASL 68
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y + ++VY +T +SF + +L + K I LV
Sbjct: 69 APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASK--------------DIIIALV 114
Query: 120 GNKKDLHM---ERMISYDEGKRLAESWKAGFVEASAKQDD 156
GNK D ER ++ +EG++LAE F E SAK +
Sbjct: 115 GNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGE 154
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G +VGKSSL ++FV GQF + + TI F+ +T +++ ++ DTAGQ+ Y
Sbjct: 13 LGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 72
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y ++VY IT+ +SF + +N I L
Sbjct: 73 APXYYRGAQAAIVVYDITNEESF--------------ARAKNWVKELQRQASPNIVIALS 118
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL +R + + E + A+ F E SAK
Sbjct: 119 GNKADLANKRAVDFQEAQSYADDNSLLFXETSAK 152
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKSSL ++FV GQF + + TI F+ +T +++ ++ DTAGQ+ Y
Sbjct: 12 LGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 71
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y ++VY IT+ +SF + +N I L
Sbjct: 72 APMYYRGAQAAIVVYDITNEESF--------------ARAKNWVKELQRQASPNIVIALS 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL +R + + E + A+ F+E SAK
Sbjct: 118 GNKADLANKRAVDFQEAQSYADDNSLLFMETSAK 151
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKSSL ++FV GQF + + TI F+ +T +++ ++ DTAGQ+ Y
Sbjct: 12 LGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 71
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y ++VY IT+ +SF + +N I L
Sbjct: 72 APMYYRGAQAAIVVYDITNEESF--------------ARAKNWVKELQRQASPNIVIALS 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL +R + + E + A+ F+E SAK
Sbjct: 118 GNKADLANKRAVDFQEAQSYADDNSLLFMETSAK 151
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKSSL ++FV GQF + + TI F+ +T +++ ++ DTAGQ+ Y
Sbjct: 12 LGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 71
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y ++VY IT+ +SF + +N I L
Sbjct: 72 APMYYRGAQAAIVVYDITNEESF--------------ARAKNWVKELQRQASPNIVIALS 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL +R + + E + A+ F+E SAK
Sbjct: 118 GNKADLANKRAVDFQEAQSYADDNSLLFMETSAK 151
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKSSL ++FV GQF + + TI F+ +T +++ ++ DTAGQ+ Y
Sbjct: 12 LGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 71
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y ++VY IT+ +SF + +N I L
Sbjct: 72 APMYYRGAQAAIVVYDITNEESF--------------ARAKNWVKELQRQASPNIVIALS 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL +R + + E + A+ F+E SAK
Sbjct: 118 GNKADLANKRAVDFQEAQSYADDNSLLFMETSAK 151
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 12/155 (7%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G R GKS+L+++F+ +F+ YDP +E+T+ +++Q L+++DTA D
Sbjct: 27 LGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC- 85
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
+Y H +++VYS+ S + Y +LL + K P +L+G
Sbjct: 86 ERYLNWAHAFLVVYSVDS-RQSFDSSSSYLELLALHAK----------ETQRSIPALLLG 134
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
NK D+ R ++ EG LA + F E SA D
Sbjct: 135 NKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLD 169
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G +VGKSSL ++FV GQF + + TI F+ +T +++ ++ DTAGQ+ Y
Sbjct: 9 LGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 68
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y ++VY IT+ +F + +N I L
Sbjct: 69 APMYYRGAQAAIVVYDITNTDTF--------------ARAKNWVKELQRQASPNIVIALA 114
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL +R + + E + A+ F+E SAK
Sbjct: 115 GNKADLASKRAVEFQEAQAYADDNSLLFMETSAK 148
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKSSL ++FV GQF + + TI F+ +T +++ ++ DTAGQ+ Y
Sbjct: 12 LGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 71
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y ++VY IT+ +SF + +N I L
Sbjct: 72 APMYYRGAQAAIVVYDITNEESF--------------ARAKNWVKELQRQASPNIVIALS 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL +R + + E + A+ F+E SAK
Sbjct: 118 GNKADLANKRAVDFQEAQSYADDNSLLFMETSAK 151
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 15/157 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS L QF + +F+ TI F + ++ Q L++ DTAGQ+ +
Sbjct: 21 IGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV 80
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y G ++VY IT ++ + ++T I+L+
Sbjct: 81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--------------NTVIILI 126
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
GNK DL +R ++Y+E K+ AE F+EASAK +
Sbjct: 127 GNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGE 163
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 73/156 (46%), Gaps = 16/156 (10%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKSSL ++F D F SY TI F ++T +N + L++ DTAGQ+ +
Sbjct: 15 IGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTI 74
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ Y HG ++VY +TS +SF V+ ++ + +LV
Sbjct: 75 TSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCR---------------ILV 119
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
GNK D +++ ++ + A E SAK++
Sbjct: 120 GNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKEN 155
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 15/157 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS L QF + +F+ TI F + ++ Q L++ DTAGQ +
Sbjct: 36 IGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAV 95
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y G ++VY IT ++ + ++T I+L+
Sbjct: 96 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--------------NTVIILI 141
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
GNK DL +R ++Y+E K+ AE F+EASAK +
Sbjct: 142 GNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGE 178
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G +VGKSSL ++FV GQF + + TI F+ +T +++ ++ DTAG + Y
Sbjct: 11 LGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSL 70
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y ++VY IT+ +SF + +N I L
Sbjct: 71 APMYYRGAQAAIVVYDITNEESF--------------ARAKNWVKELQRQASPNIVIALS 116
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL +R + + E + A+ F+E SAK
Sbjct: 117 GNKADLANKRAVDFQEAQSYADDNSLLFMETSAK 150
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 15/156 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGK+ + +F + F ++ TI F ++T ++ + L++ DTAGQ+ +
Sbjct: 12 IGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 71
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y G +LVY IT+ KSF+ I+N +++
Sbjct: 72 TTAYYRGAMGIMLVYDITNEKSFD--------------NIRNWIRNIEEHASADVEKMIL 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
GNK D++ +R +S + G++LA + F+E SAK +
Sbjct: 118 GNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKAN 153
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 15/156 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGK+ + +F + F ++ TI F ++T ++ + L++ DTAGQ+ +
Sbjct: 14 IGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 73
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y G +LVY IT+ KSF+ I+N +++
Sbjct: 74 TTAYYRGAMGIMLVYDITNEKSFD--------------NIRNWIRNIEEHASADVEKMIL 119
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
GNK D++ +R +S + G++LA + F+E SAK +
Sbjct: 120 GNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKAN 155
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 15/157 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGK+ L +F G F TI F +KT +N + L++ DTAGQ+ +
Sbjct: 32 IGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSI 91
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y + +L Y IT +SF + L + L ++ N VLV
Sbjct: 92 TQSYYRSANALILTYDITCEESF---RCLPEWLREIEQYASNKVIT-----------VLV 137
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
GNK DL R +S + +E+ ++E SAK+ D
Sbjct: 138 GNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESD 174
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G +VGKSSL ++FV GQF + + TI F+ +T +++ ++ DTAG + Y
Sbjct: 11 LGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSL 70
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y ++VY IT+ +F + +N I L
Sbjct: 71 APMYYRGAQAAIVVYDITNTDTF--------------ARAKNWVKELQRQASPNIVIALA 116
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL +R + + E + A+ F+E SAK
Sbjct: 117 GNKADLASKRAVEFQEAQAYADDNSLLFMETSAK 150
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 29/170 (17%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G GK+SL + F DG F +SY PT+ ++ ++ + L + DTAGQD+Y
Sbjct: 40 VGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLR 99
Query: 61 AQYSMDIHGYVLVYSITSHKSFE-VVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ D +L + +TS SF+ + Y ++ K+ PI++V
Sbjct: 100 PLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKV---------------PIIVV 144
Query: 120 GNKKDLHMER------------MISYDEGKRLAESWKA-GFVEASAKQDD 156
G K DL ++ ++Y G+ +A S A ++E SA+ D
Sbjct: 145 GCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHD 194
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 68/153 (44%), Gaps = 15/153 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G GKS L QF++ +F D + TI F K + + L++ DTAGQ+ +
Sbjct: 17 IGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSV 76
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y G +LVY ITS +++ + N I+L
Sbjct: 77 TRSYYRGAAGALLVYDITSRETYNA--------------LTNWLTDARMLASQNIVIILC 122
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
GNKKDL +R +++ E R A+ + F+E SA
Sbjct: 123 GNKKDLDADREVTFLEASRFAQENELMFLETSA 155
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS L +QF D +F +D TI F + ++ + L++ DTAGQ+ +
Sbjct: 27 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI 86
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y G +LVY IT ++F +T +++ I+L+
Sbjct: 87 TRSYYRGAAGALLVYDITRRETFN----------HLTSWLEDARQHSSSNMV----IMLI 132
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL R + +EG+ A F+E SAK
Sbjct: 133 GNKSDLESRRDVKREEGEAFAREHGLIFMETSAK 166
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 68/153 (44%), Gaps = 15/153 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G GKS L QF++ +F D + TI F K + + L++ DTAGQ+ +
Sbjct: 16 IGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSV 75
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y G +LVY ITS +++ + N I+L
Sbjct: 76 TRSYYRGAAGALLVYDITSRETYNA--------------LTNWLTDARMLASQNIVIILC 121
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
GNKKDL +R +++ E R A+ + F+E SA
Sbjct: 122 GNKKDLDADREVTFLEASRFAQENELMFLETSA 154
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 30/162 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMN--NQDYD-------LKLVDTA 51
+G VGK+ L ++F DG F + TF+ T ++ N+ D L++ DTA
Sbjct: 16 VGDSGVGKTCLLVRFKDGAF-------LAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTA 68
Query: 52 GQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXX 111
GQ+ + Y D H +L+Y +T+ SF+ +Q ++ +
Sbjct: 69 GQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA--------------Q 114
Query: 112 XXXPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
++L+GNK D ER++ ++G++LA+ + F+E SAK
Sbjct: 115 HDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAK 156
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 29/170 (17%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G + GK+ L I F QF + Y PT+ +V ++ + +L L DTAGQ++Y +
Sbjct: 12 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 71
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
P Y D ++ +SI S S E I PI+LV
Sbjct: 72 PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 116
Query: 120 GNKKDL----HMERMISY--------DEGKRLAESWKA-GFVEASAKQDD 156
GNKKDL H R ++ +EG+ +A A G++E SAK D
Sbjct: 117 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 166
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 29/170 (17%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G + GK+ L I F QF + Y PT+ +V ++ + +L L DTAGQ++Y +
Sbjct: 13 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 72
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
P Y D ++ +SI S S E I PI+LV
Sbjct: 73 PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 117
Query: 120 GNKKDL----HMERMISY--------DEGKRLAESWKA-GFVEASAKQDD 156
GNKKDL H R ++ +EG+ +A A G++E SAK D
Sbjct: 118 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 167
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 29/170 (17%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G + GK+ L I F QF + Y PT+ +V ++ + +L L DTAGQ++Y +
Sbjct: 12 VGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 71
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
P Y D ++ +SI S S E I PI+LV
Sbjct: 72 PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 116
Query: 120 GNKKDL----HMERMISY--------DEGKRLAESWKA-GFVEASAKQDD 156
GNKKDL H R ++ +EG+ +A A G++E SAK D
Sbjct: 117 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 166
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 29/170 (17%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G + GK+ L I F QF + Y PT+ +V ++ + +L L DTAGQ++Y +
Sbjct: 13 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 72
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
P Y D ++ +SI S S E I PI+LV
Sbjct: 73 PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 117
Query: 120 GNKKDL----HMERMISY--------DEGKRLAESWKA-GFVEASAKQDD 156
GNKKDL H R ++ +EG+ +A A G++E SAK D
Sbjct: 118 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 167
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 29/170 (17%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G + GK+ L I F QF + Y PT+ +V ++ + +L L DTAGQ++Y +
Sbjct: 11 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
P Y D ++ +SI S S E I PI+LV
Sbjct: 71 PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 115
Query: 120 GNKKDL----HMERMISY--------DEGKRLAESWKA-GFVEASAKQDD 156
GNKKDL H R ++ +EG+ +A A G++E SAK D
Sbjct: 116 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 165
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 29/170 (17%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G + GK+ L I F QF + Y PT+ +V ++ + +L L DTAGQ++Y +
Sbjct: 14 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 73
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
P Y D ++ +SI S S E I PI+LV
Sbjct: 74 PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 118
Query: 120 GNKKDL----HMERMISY--------DEGKRLAESWKA-GFVEASAKQDD 156
GNKKDL H R ++ +EG+ +A A G++E SAK D
Sbjct: 119 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 168
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 29/170 (17%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G + GK+ L I F QF + Y PT+ +V ++ + +L L DTAGQ++Y +
Sbjct: 15 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 74
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
P Y D ++ +SI S S E I PI+LV
Sbjct: 75 PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 119
Query: 120 GNKKDL----HMERMIS--------YDEGKRLAESWKA-GFVEASAKQDD 156
GNKKDL H R ++ +EG+ +A A G++E SAK D
Sbjct: 120 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 169
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 71/154 (46%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G VGK+SL+ F Q D ++ E+ + +T ++ +D L +VDT ++
Sbjct: 10 LGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSW 69
Query: 61 AQYSMDIHG--YVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
+Q S G YV+VYSI SFE L +L PI+L
Sbjct: 70 SQESCLQGGSAYVIVYSIADRGSFESASELRIQL-------------RRTHQADHVPIIL 116
Query: 119 VGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
VGNK DL R +S +EG+ A + F+E SA
Sbjct: 117 VGNKADLARCREVSVEEGRACAVVFDCKFIETSA 150
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 29/170 (17%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G + GK+ L I F QF + Y PT+ +V ++ + +L L DTAGQ++Y +
Sbjct: 13 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 72
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
P Y D ++ +SI S S E I PI+LV
Sbjct: 73 PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 117
Query: 120 GNKKDL----HMERMISY--------DEGKRLAESWKA-GFVEASAKQDD 156
GNKKDL H R ++ +EG+ +A A G++E SAK D
Sbjct: 118 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 167
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 15/153 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS+L +F +F TI F ++ +++ + ++ DTAGQ+ Y
Sbjct: 35 IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAI 94
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ Y G +LVY I H ++E V+ +L D I+LV
Sbjct: 95 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--------------DSNIVIMLV 140
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
GNK DL R + DE + AE F+E SA
Sbjct: 141 GNKSDLRHLRAVPTDEARAFAEKNGLSFIETSA 173
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 59.3 bits (142), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 15/153 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS+L +F +F TI F ++ +++ + ++ DTAGQ+ Y
Sbjct: 26 IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAI 85
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ Y G +LVY I H ++E V+ +L D I+LV
Sbjct: 86 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--------------DSNIVIMLV 131
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
GNK DL R + DE + AE F+E SA
Sbjct: 132 GNKSDLRHLRAVPTDEARAFAEKNGLSFIETSA 164
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 15/153 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS+L +F +F TI F ++ +++ + ++ DTAGQ+ Y
Sbjct: 11 IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRI 70
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ Y G +LVY I H ++E V+ +L D I+LV
Sbjct: 71 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS--------------NIVIMLV 116
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
GNK DL R + DE + AE F+E SA
Sbjct: 117 GNKSDLRHLRAVPTDEARAFAEKNNLSFIETSA 149
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS L +QF D +F +D TI F + ++ + L++ DTAGQ+ +
Sbjct: 16 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSI 75
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y G +LVY IT +F +T +++ I+L+
Sbjct: 76 TRSYYRGAAGALLVYDITRRDTFN----------HLTTWLEDARQHSNSNMV----IMLI 121
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL R + +EG+ A F+E SAK
Sbjct: 122 GNKSDLESRREVKKEEGEAFAREHGLIFMETSAK 155
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 16/154 (10%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRM-NNQDYDLKLVDTAGQDEYSI 58
+G VGKS+L +F +F TI F K+ ++ NN+ ++ DTAGQ+ Y
Sbjct: 13 IGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQERYRA 72
Query: 59 FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
+ Y G +LVY IT SFE ++ +L D I+L
Sbjct: 73 ITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRD--------------NADSNIVILL 118
Query: 119 VGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
VGNK DL R+I+ ++ + A+ K F+E SA
Sbjct: 119 VGNKSDLKHLRVINDNDATQYAKKEKLAFIETSA 152
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 29/167 (17%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G + GK+ L I F QF + Y PT+ ++ ++ + +L L DTAGQ++Y +
Sbjct: 31 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLR 90
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
P Y D ++ +SI S S E I PI+LV
Sbjct: 91 PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 135
Query: 120 GNKKDL----HMERMIS--------YDEGKRLAESWKA-GFVEASAK 153
GNKKDL H R ++ +EG+ +A A G++E SAK
Sbjct: 136 GNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
G +VGKSS ++ +F ++ T+ F +KT ++ + L+L DTAGQ+ +
Sbjct: 35 GDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIA 94
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
Y G +L+Y +T KSF ++ D + D PI+LVG
Sbjct: 95 KSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAA--------------HETVPIMLVG 140
Query: 121 NKKDLH------MERMISYDEGKRLAESWKAGFVEASAK 153
NK D+ ++ + G++LA ++ A F E SAK
Sbjct: 141 NKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAK 179
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 15/155 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKSS+ +FV+ F + +PTI +F+ KT + N+ + + DTAGQ+ +
Sbjct: 11 LGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRAL 70
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y ++VY IT ++F ++N + +
Sbjct: 71 APMYYRGSAAAIIVYDITKEETFST--------------LKNWVRELRQHGPPSIVVAIA 116
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
GNK DL R + + K A+S A FVE SAK
Sbjct: 117 GNKCDLTDVREVMERDAKDYADSIHAIFVETSAKN 151
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 15/153 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G GKS L QF++ +F D + TI F K + + L++ DTAG + +
Sbjct: 14 IGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRSV 73
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y G +LVY ITS +++ + N I+L
Sbjct: 74 TRSYYRGAAGALLVYDITSRETYNA--------------LTNWLTDARMLASQNIVIILC 119
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
GNKKDL +R +++ E R A+ + F+E SA
Sbjct: 120 GNKKDLDADREVTFLEASRFAQENELMFLETSA 152
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 75/167 (44%), Gaps = 29/167 (17%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G + GK+ L I F QF + Y PT+ ++ ++ + +L L DTAGQ++Y +
Sbjct: 31 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLR 90
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
P Y D ++ +SI S S E I PI+LV
Sbjct: 91 PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFXPNVPIILV 135
Query: 120 GNKKDL----HMERMIS--------YDEGKRLAESWKA-GFVEASAK 153
GNKKDL H R ++ +EG+ +A A G++E SAK
Sbjct: 136 GNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 70/161 (43%), Gaps = 23/161 (14%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-----VKTTRMNNQDYDLKLVDTAGQDE 55
+G VGKSSL ++F D D++DP + T VKT ++ L + DTAGQ+
Sbjct: 21 IGESGVGKSSLLLRFTD----DTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76
Query: 56 YSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXP 115
+ Y G +LVY +T +F KL + +++
Sbjct: 77 FRTLTPSYYRGAQGVILVYDVTRRDTFV-------KLDNWLNELETYCTRNDIVN----- 124
Query: 116 IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
LVGNK D R + +EG + A F+EASAK D
Sbjct: 125 -XLVGNKID-KENREVDRNEGLKFARKHSXLFIEASAKTCD 163
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 17/154 (11%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G GKS L QF++ +F + TI F + + + L++ DTAGQ+ +
Sbjct: 31 IGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSV 90
Query: 60 PAQYSMDIHGYVLVYSITSHKSFE-VVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
Y G +LVY ITS +++ + L D + I ++L
Sbjct: 91 TRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNI---------------VVIL 135
Query: 119 VGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
GNKKDL ER +++ E R A+ + F+E SA
Sbjct: 136 CGNKKDLDPEREVTFLEASRFAQENELMFLETSA 169
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 68/155 (43%), Gaps = 15/155 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKSS+ +FV F + PTI +F+ KT N+ + + DTAGQ+ +
Sbjct: 29 LGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSL 88
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y V+VY IT SF ++ +L + +N + +
Sbjct: 89 APMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGP--ENIV------------MAIA 134
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
GNK DL R + + K AES A VE SAK
Sbjct: 135 GNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKN 169
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 24/163 (14%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTT---RMNNQD--------YDLKLVD 49
+G VGK+S+ Q+ DG+F + T+ F + R N D L+L D
Sbjct: 17 LGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWD 76
Query: 50 TAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXX 109
TAG + + + D G++L++ +T+ +SF V+ +L M +N
Sbjct: 77 TAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQL-QMHAYSENP------- 128
Query: 110 XXXXXPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
IVL GNK DL +R + +E + LAE + + E SA
Sbjct: 129 -----DIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA 166
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 15/153 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS+L +F +F TI F ++ +++ + ++ DTAG + Y
Sbjct: 35 IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAI 94
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ Y G +LVY I H ++E V+ +L D I+LV
Sbjct: 95 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--------------DSNIVIMLV 140
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
GNK DL R + DE + AE F+E SA
Sbjct: 141 GNKSDLRHLRAVPTDEARAFAEKNGLSFIETSA 173
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 29/170 (17%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G + GK+ L I QF + Y PT+ +V ++ + +L L DTAGQ++Y +
Sbjct: 11 VGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
P Y D ++ +SI S S E I PI+LV
Sbjct: 71 PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 115
Query: 120 GNKKDL----HMERMISY--------DEGKRLAESWKA-GFVEASAKQDD 156
GNKKDL H R ++ +EG+ +A A G++E SAK D
Sbjct: 116 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 165
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 29/170 (17%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G + GK+ L I QF + Y PT+ +V ++ + +L L DTAGQ++Y +
Sbjct: 11 VGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
P Y D ++ +SI S S E I PI+LV
Sbjct: 71 PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 115
Query: 120 GNKKDL----HMERMISY--------DEGKRLAESWKA-GFVEASAKQDD 156
GNKKDL H R ++ +EG+ +A A G++E SAK D
Sbjct: 116 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 165
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS L ++F D + +SY TI F ++T ++ + L++ DTAGQ+ +
Sbjct: 4 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 63
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQ 86
+ Y HG ++VY +T +SF V+
Sbjct: 64 TSSYYRGAHGIIVVYDVTDQESFNNVK 90
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 29/170 (17%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G + GK+ L I QF + Y PT+ +V ++ + +L L DTAGQ++Y +
Sbjct: 9 VGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 68
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
P Y D ++ +SI S S E I PI+LV
Sbjct: 69 PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 113
Query: 120 GNKKDL----HMERMISY--------DEGKRLAESWKA-GFVEASAKQDD 156
GNKKDL H R ++ +EG+ +A A G++E SAK D
Sbjct: 114 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 163
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 15/153 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS+L +F +F TI F ++ +++ + ++ DTAG + Y
Sbjct: 14 IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAI 73
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ Y G +LVY I H ++E V+ +L D I+LV
Sbjct: 74 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--------------DSNIVIMLV 119
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
GNK DL R + DE + AE F+E SA
Sbjct: 120 GNKSDLRHLRAVPTDEARAFAEKNGLSFIETSA 152
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 29/170 (17%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G + GK+ L I QF + Y PT+ +V ++ + +L L DTAGQ++Y +
Sbjct: 9 VGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 68
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
P Y D ++ +SI S S E I PI+LV
Sbjct: 69 PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 113
Query: 120 GNKKDL----HMERMISY--------DEGKRLAESWKA-GFVEASAKQDD 156
GNKKDL H R ++ +EG+ +A A G++E SAK D
Sbjct: 114 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 163
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 29/170 (17%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G + GK+ L I QF + Y PT+ +V ++ + +L L DTAGQ++Y +
Sbjct: 11 VGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
P Y D ++ +SI S S E I PI+LV
Sbjct: 71 PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 115
Query: 120 GNKKDL----HMERMISY--------DEGKRLAESWKA-GFVEASAKQDD 156
GNKKDL H R ++ +EG+ +A A G++E SAK D
Sbjct: 116 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 165
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 56.2 bits (134), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 72/170 (42%), Gaps = 29/170 (17%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G + GK+ L I F QF Y PT+ +V ++ + +L L DTAGQ++Y
Sbjct: 11 VGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRAR 70
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
P Y D ++ +SI S S E I PI+LV
Sbjct: 71 PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 115
Query: 120 GNKKDL----HMERMISY--------DEGKRLAESWKA-GFVEASAKQDD 156
GNKKDL H R ++ EG+ +A A G++E SAK D
Sbjct: 116 GNKKDLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKD 165
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 15/153 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS+L +F +F TI F ++ +++ + ++ DTAG + Y
Sbjct: 17 IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAI 76
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ Y G +LVY I H ++E V+ +L D I LV
Sbjct: 77 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--------------DSNIVIXLV 122
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
GNK DL R + DE + AE F+E SA
Sbjct: 123 GNKSDLRHLRAVPTDEARAFAEKNGLSFIETSA 155
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 15/153 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS+L +F +F TI F ++ +++ + ++ DTAG + Y
Sbjct: 11 IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAI 70
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ Y G +LVY I H ++E V+ +L D I LV
Sbjct: 71 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--------------DSNIVIXLV 116
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
GNK DL R + DE + AE F+E SA
Sbjct: 117 GNKSDLRHLRAVPTDEARAFAEKNGLSFIETSA 149
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 15/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G GKSSL ++FV QFV+ + TI F +T +N+ ++ DTAGQ+ Y
Sbjct: 18 LGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL 77
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y ++V+ +T+ SFE + +L + L
Sbjct: 78 APMYYRGAAAAIIVFDVTNQASFERAKKWVQEL--------------QAQGNPNMVMALA 123
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL R ++ ++ + A+ F+E SAK
Sbjct: 124 GNKSDLLDARKVTAEDAQTYAQENGLFFMETSAK 157
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 15/155 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKSS+ +FV+ F + +PTI +F+ KT + N+ + + DTAG + +
Sbjct: 12 LGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRAL 71
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y ++VY IT ++F ++N + +
Sbjct: 72 APMYYRGSAAAIIVYDITKEETFST--------------LKNWVRELRQHGPPSIVVAIA 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
GNK DL R + + K A+S A FVE SAK
Sbjct: 118 GNKCDLTDVREVMERDAKDYADSIHAIFVETSAKN 152
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 15/153 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGK++L +F +F TI F +T + ++ DTAG + Y
Sbjct: 31 IGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI 90
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ Y G +LV+ +T H+++ VV+ +L D ++LV
Sbjct: 91 TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYD--------------HAEATIVVMLV 136
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
GNK DL R + +E + AE+ F+E SA
Sbjct: 137 GNKSDLSQAREVPTEEARMFAENNGLLFLETSA 169
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+SL + + + Y PT + F ++ + L+L DTAGQDE+ +
Sbjct: 26 VGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLR 85
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y+ DI ++L +S+ S SF+ + PI+L
Sbjct: 86 PLCYTNTDI--FLLCFSVVSPSSFQ--------------NVSEKWVPEIRCHCPKAPIIL 129
Query: 119 VGNKKDLH------------MERMISYDEGKRLAESWKAG-FVEASA 152
VG + DL E+ + + K LAE KA ++E SA
Sbjct: 130 VGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSA 176
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 15/153 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGK++L +F +F TI F +T + ++ DTAG + Y
Sbjct: 16 IGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI 75
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ Y G +LV+ +T H+++ VV+ +L D ++LV
Sbjct: 76 TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYD--------------HAEATIVVMLV 121
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
GNK DL R + +E + AE+ F+E SA
Sbjct: 122 GNKSDLSQAREVPTEEARMFAENNGLLFLETSA 154
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 29/167 (17%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G + GK+ L I QF + Y PT+ ++ ++ + +L L DTAGQ++Y +
Sbjct: 11 VGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLR 70
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
P Y D ++ +SI S S E I PI+LV
Sbjct: 71 PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 115
Query: 120 GNKKDL----HMERMISY--------DEGKRLAESWKA-GFVEASAK 153
GNKKDL H R ++ +EG+ +A A G++E SAK
Sbjct: 116 GNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 162
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 15/158 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G +VGK+ L+ +F G+F D + TI F + ++ + ++L DTAGQ+ +
Sbjct: 26 IGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKS 85
Query: 60 PAQ-YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
Q Y ++H V VY +T+ SF + ++ P +L
Sbjct: 86 MVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEEC-------------KQHLLANDIPRIL 132
Query: 119 VGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
VGNK DL + D ++ A++ E SAK +
Sbjct: 133 VGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPN 170
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 15/158 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G +VGK+ L+ +F G+F D + TI F + ++ + ++L DTAGQ+ +
Sbjct: 35 IGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKS 94
Query: 60 PAQ-YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
Q Y ++H V VY T+ SF + ++ P +L
Sbjct: 95 MVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEEC-------------KQHLLANDIPRIL 141
Query: 119 VGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
VGNK DL + D ++ A++ E SAK +
Sbjct: 142 VGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPN 179
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 67/155 (43%), Gaps = 20/155 (12%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE---NTFVKTTRMNNQDYDLKLVDTAGQDEYS 57
+G VGKS+L+ F G D P E +T+ ++ ++ ++ L + D QD
Sbjct: 13 LGAPGVGKSALARIF--GGVEDG--PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 68
Query: 58 IFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIV 117
P YV+VYS+T SFE L +L PI+
Sbjct: 69 WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQL-------------RRARQTDDVPII 115
Query: 118 LVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
LVGNK DL R +S DEG+ A + F+E SA
Sbjct: 116 LVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSA 150
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 67/155 (43%), Gaps = 20/155 (12%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE---NTFVKTTRMNNQDYDLKLVDTAGQDEYS 57
+G VGKS+L+ F G D P E +T+ ++ ++ ++ L + D QD
Sbjct: 13 LGAPGVGKSALARIF--GGVEDG--PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 68
Query: 58 IFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIV 117
P YV+VYS+T SFE L +L PI+
Sbjct: 69 WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQL-------------RRARQTDDVPII 115
Query: 118 LVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
LVGNK DL R +S DEG+ A + F+E SA
Sbjct: 116 LVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSA 150
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 27/164 (16%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS-IF 59
+G +VGK+ + I + +F Y PT+ + F ++ Q +L L DTAGQ++YS +
Sbjct: 15 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLR 74
Query: 60 PAQY-SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y DI +VL +S+ S S+E +L + ++ N PIVL
Sbjct: 75 PLSYRGADI--FVLAFSLISKASYE--NVLKKWMPELRRFAPN------------VPIVL 118
Query: 119 VGNKKDLHMER--------MISYDEGKRLAES-WKAGFVEASAK 153
VG K DL ++ +I+ +G+ L + A ++E S+K
Sbjct: 119 VGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSK 162
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 67/155 (43%), Gaps = 20/155 (12%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE---NTFVKTTRMNNQDYDLKLVDTAGQDEYS 57
+G VGKS+L+ F G D P E +T+ ++ ++ ++ L + D QD
Sbjct: 8 LGAPGVGKSALARIF--GGVEDG--PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 63
Query: 58 IFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIV 117
P YV+VYS+T SFE L +L PI+
Sbjct: 64 WLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQL-------------RRARQTDDVPII 110
Query: 118 LVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
LVGNK DL R +S DEG+ A + F+E SA
Sbjct: 111 LVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSA 145
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 73/170 (42%), Gaps = 29/170 (17%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G + GK+ L I QF + Y PT+ +V ++ + +L L DTAG ++Y +
Sbjct: 14 VGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLR 73
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
P Y D ++ +SI S S E I PI+LV
Sbjct: 74 PLSYP-DTDVILMCFSIDSPDSLE--------------NIPEKWTPEVKHFCPNVPIILV 118
Query: 120 GNKKDL----HMERMIS--------YDEGKRLAESWKA-GFVEASAKQDD 156
GNKKDL H R ++ +EG+ +A A G++E SAK D
Sbjct: 119 GNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 168
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 69/157 (43%), Gaps = 20/157 (12%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G SVGK+ + +F G F + TI F +KT + + L++ DTAGQ+ +
Sbjct: 35 VGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTI 94
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGK--IQNXXXXXXXXXXXXXPIV 117
Y +G +L Y IT SF V + + G +Q +
Sbjct: 95 TQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQ----------------L 138
Query: 118 LVGNKKDLHMERMISYDEGKRLAESWK-AGFVEASAK 153
L+GNK DL R +S E + LAE + +E SAK
Sbjct: 139 LIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAK 175
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + +F Y PT+ + + T + + Y L L DTAGQ++Y +
Sbjct: 9 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQEDYDRLR 68
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE V+ + + ++T P +L
Sbjct: 69 PLSYPQTDV--FLVCFSVVSPSSFENVKEKW--VPEITHHCPK------------TPFLL 112
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
VG + DL + ++ I+ + ++LA KA +VE SA
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + +F Y PT+ + + T + + Y L L DTAGQ++Y +
Sbjct: 13 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 72
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE ++ P +L
Sbjct: 73 PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 116
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
VG + DL + ++ I+ + ++LA KA +VE SA
Sbjct: 117 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 163
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + +F Y PT+ + + T + + Y L L DTAGQ++Y +
Sbjct: 9 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 68
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE ++ P +L
Sbjct: 69 PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 112
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
VG + DL + ++ I+ + ++LA KA +VE SA
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + +F Y PT+ + + T + + Y L L DTAGQ++Y +
Sbjct: 12 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 71
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE ++ P +L
Sbjct: 72 PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 115
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
VG + DL + ++ I+ + ++LA KA +VE SA
Sbjct: 116 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 162
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + +F Y PT+ + + T + + Y L L DTAGQ++Y +
Sbjct: 9 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 68
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE ++ P +L
Sbjct: 69 PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 112
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
VG + DL + ++ I+ + ++LA KA +VE SA
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + +F Y PT+ + + T + + Y L L DTAGQ++Y +
Sbjct: 9 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 68
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE ++ P +L
Sbjct: 69 PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 112
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
VG + DL + ++ I+ + ++LA KA +VE SA
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + +F Y PT+ + + T + + Y L L DTAGQ++Y +
Sbjct: 9 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 68
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE ++ P +L
Sbjct: 69 PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 112
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
VG + DL + ++ I+ + ++LA KA +VE SA
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + +F Y PT+ + + T + + Y L L DTAGQ++Y +
Sbjct: 9 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 68
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE ++ P +L
Sbjct: 69 PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 112
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
VG + DL + ++ I+ + ++LA KA +VE SA
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + +F Y PT+ + + T + + Y L L DTAGQ++Y +
Sbjct: 9 VGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 68
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE ++ P +L
Sbjct: 69 PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 112
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
VG + DL + ++ I+ + ++LA KA +VE SA
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 29/167 (17%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G + GK+ L I F +F + Y PT+ +V ++ + +L L DTAGQ++Y +
Sbjct: 31 VGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLR 90
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
P Y D ++ +S+ S S E I PI+LV
Sbjct: 91 PLSYP-DTDVILMCFSVDSPDSLE--------------NIPEKWVPEVKHFCPNVPIILV 135
Query: 120 GNKKDLH--------MERM----ISYDEGKRLAESWKA-GFVEASAK 153
NKKDL + RM + D+G+ +A +A ++E SAK
Sbjct: 136 ANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 182
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + +F Y PT+ + + T + + Y L L DTAGQ++Y +
Sbjct: 11 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 70
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE ++ P +L
Sbjct: 71 PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 114
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
VG + DL + ++ I+ + ++LA KA +VE SA
Sbjct: 115 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 161
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + +F Y PT+ + + T + + Y L L DTAGQ++Y +
Sbjct: 12 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 71
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE V+ + + ++T P +L
Sbjct: 72 PLSYPQTDV--FLVCFSVVSPSSFENVKEKW--VPEITHHCPK------------TPFLL 115
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
VG + DL + ++ I+ + ++LA KA +VE SA
Sbjct: 116 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 162
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + +F Y PT+ + + T + + Y L L DTAGQ++Y +
Sbjct: 11 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 70
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE V+ + + ++T P +L
Sbjct: 71 PLSYPQTDV--FLVCFSVVSPSSFENVKEKW--VPEITHHCPK------------TPFLL 114
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
VG + DL + ++ I+ + ++LA KA +VE SA
Sbjct: 115 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 161
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + +F Y PT+ + + T + + Y L L DTAGQ++Y +
Sbjct: 9 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 68
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE ++ P +L
Sbjct: 69 PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 112
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
VG + DL + ++ I+ + ++LA KA +VE SA
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + +F Y PT+ + + T + + Y L L DTAGQ++Y +
Sbjct: 10 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 69
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE ++ P +L
Sbjct: 70 PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 113
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
VG + DL + ++ I+ + ++LA KA +VE SA
Sbjct: 114 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 160
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + +F Y PT+ + + T + + Y L L DTAGQ++Y +
Sbjct: 19 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 78
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE ++ P +L
Sbjct: 79 PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 122
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
VG + DL + ++ I+ + ++LA KA +VE SA
Sbjct: 123 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 169
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + +F Y PT+ + + T + + Y L L DTAGQ++Y +
Sbjct: 16 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 75
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE V+ + + ++T P +L
Sbjct: 76 PLSYPQTDV--FLVCFSVVSPSSFENVKEKW--VPEITHHCPK------------TPFLL 119
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
VG + DL + ++ I+ + ++LA KA +VE SA
Sbjct: 120 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 166
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + +F Y PT+ + + T + + Y L L DTAGQ++Y +
Sbjct: 9 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 68
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE V+ + + ++T P +L
Sbjct: 69 PLSYPQTDV--FLVCFSVVSPSSFENVKEKW--VPEITHHCPK------------TPFLL 112
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
VG + DL + ++ I+ + ++LA KA +VE SA
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + +F Y PT+ + + T + + Y L L DTAGQ++Y +
Sbjct: 9 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQEDYDRLR 68
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE ++ P +L
Sbjct: 69 PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 112
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
VG + DL + ++ I+ + ++LA KA +VE SA
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + +F Y PT+ + + T + + Y L L DTAGQ++Y +
Sbjct: 16 VGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 75
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE V+ + + ++T P +L
Sbjct: 76 PLSYPQTDV--FLVCFSVVSPSSFENVKEKW--VPEITHHCPK------------TPFLL 119
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
VG + DL + ++ I+ + ++LA KA +VE SA
Sbjct: 120 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 166
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 26/160 (16%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE----NTFVKTTRMNNQDYDLKLVD---TAGQ 53
+G + VGKS+L+ F DS D E +T+ +T ++ + + L+D G+
Sbjct: 12 IGEQGVGKSTLANIFAGVH--DSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE 69
Query: 54 DEYSIFPAQYSMDI-HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXX 112
+E+ + M + Y++VYSIT SFE L +L
Sbjct: 70 NEW---LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL-------------RRARQTE 113
Query: 113 XXPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
PI+LVGNK DL R +S EG+ A + F+E SA
Sbjct: 114 DIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSA 153
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 26/160 (16%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE----NTFVKTTRMNNQDYDLKLVD---TAGQ 53
+G + VGKS+L+ F DS D E +T+ +T ++ + + L+D G+
Sbjct: 43 IGEQGVGKSTLANIFAGVH--DSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE 100
Query: 54 DEYSIFPAQYSMDI-HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXX 112
+E+ + M + Y++VYSIT SFE L +L
Sbjct: 101 NEW---LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL-------------RRARQTE 144
Query: 113 XXPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
PI+LVGNK DL R +S EG+ A + F+E SA
Sbjct: 145 DIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSA 184
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + +F Y P + + + T + + Y L L DTAGQ++Y +
Sbjct: 9 VGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 68
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE ++ P +L
Sbjct: 69 PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 112
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
VG + DL + ++ I+ + ++LA KA +VE SA
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + + Y PT+ + + T + + Y L L DTAGQ++Y +
Sbjct: 9 VGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLR 68
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE ++ P +L
Sbjct: 69 PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 112
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
VG + DL + ++ I+ + ++LA KA +VE SA
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + +F Y PT+ + + T + + Y L L DTAG ++Y +
Sbjct: 13 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDYDRLR 72
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE ++ P +L
Sbjct: 73 PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 116
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
VG + DL + ++ I+ + ++LA KA +VE SA
Sbjct: 117 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 163
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L + + + F + Y PT+ + + + + + Y L L DTAGQ++Y +
Sbjct: 24 VGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLR 83
Query: 60 PAQYSM-DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y M D+ +++ +S+ + SF+ ++ P +L
Sbjct: 84 PLSYPMTDV--FLICFSVVNPASFQ--------------NVKEEWVPELKEYAPNVPFLL 127
Query: 119 VGNKKDLH------------MERMISYDEGKRLA-ESWKAGFVEASA 152
+G + DL E+ I ++G++LA E +VE SA
Sbjct: 128 IGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 174
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 29/167 (17%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G + GK+ L I GQF + Y PT+ +V ++ + +L L DTAGQ++Y +
Sbjct: 16 VGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDYDRLR 75
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
P Y D + ++ +SI S E +Q PI+LV
Sbjct: 76 PLSYP-DSNVVLICFSIDLPDSLE--------------NVQEKWIAEVLHFCQGVPIILV 120
Query: 120 GNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASAK 153
G K DL +E++ ++ EG+ +A+ A G+ E SAK
Sbjct: 121 GCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAK 167
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 26/164 (15%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYD----------LKLVD 49
+G VGK++ ++ D +F + T+ F K N Q + L+L D
Sbjct: 31 LGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWD 90
Query: 50 TAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXX 109
TAGQ+ + + D G++L++ +TS +SF ++N
Sbjct: 91 TAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFL--------------NVRNWMSQLQAN 136
Query: 110 XXXXXP-IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
P IVL+GNK DL +R ++ + + LA+ + + E SA
Sbjct: 137 AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA 180
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + +F Y PT+ + + T + + Y L L DTAG ++Y +
Sbjct: 9 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDYDRLR 68
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE ++ P +L
Sbjct: 69 PLSYPQTDV--FLVCFSVVSPSSFE--------------NVKEKWVPEITHHCPKTPFLL 112
Query: 119 VGNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASA 152
VG + DL + ++ I+ + ++LA KA +VE SA
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 17/155 (10%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDP-TIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS+L+ F Q +++P E+T+ + ++ ++ L + D Q + +
Sbjct: 29 VGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGW 88
Query: 60 PAQYSMDIH-GYVLVYSITSHKSFEVVQILYDKLLDM-TGKIQNXXXXXXXXXXXXXPIV 117
+ + +++V+S+T +SF V + LL + G+ + P++
Sbjct: 89 LRDHCLQTGDAFLIVFSVTDRRSFSKVP---ETLLRLRAGRPHHDL-----------PVI 134
Query: 118 LVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
LVGNK DL R +S +EG+ LA + +E SA
Sbjct: 135 LVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSA 169
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L + F G+ +Y PT+ F + N+++ L L DTAGQ+EY +
Sbjct: 29 VGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLR 88
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYD 90
P Y+ D +L +++ + SF+ + ++
Sbjct: 89 PLSYA-DSDVVLLCFAVNNRTSFDNISTKWE 118
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L + F G+ +Y PT+ F + N+++ L L DTAGQ+EY +
Sbjct: 28 VGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLR 87
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYD 90
P Y+ D +L +++ + SF+ + ++
Sbjct: 88 PLSYA-DSDVVLLCFAVNNRTSFDNISTKWE 117
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++ + +L L DTAGQ++Y +
Sbjct: 10 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 69
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE V+ + PI+L
Sbjct: 70 PLSYPQTDV--FLICFSLVSPASFENVRAKW--------------YPEVRHHCPHTPILL 113
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLA-ESWKAGFVEASA 152
VG K DL +ER+ I+Y +G +A E ++E SA
Sbjct: 114 VGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSA 160
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++ + +L L DTAGQ++Y +
Sbjct: 9 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 68
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE V+ + PI+L
Sbjct: 69 PLSYPQTDV--FLICFSLVSPASFENVRAKW--------------YPEVRHHCPHTPILL 112
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLA-ESWKAGFVEASA 152
VG K DL +ER+ I+Y +G +A E ++E SA
Sbjct: 113 VGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSA 159
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 26/160 (16%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE----NTFVKTTRMNNQDYDLKLVD---TAGQ 53
+G + VGKS+L+ F DS D E +T+ +T ++ + + L+D G+
Sbjct: 12 IGEQGVGKSTLANIFAGVH--DSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGE 69
Query: 54 DEYSIFPAQYSMDI-HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXX 112
+E+ + M + Y++VYSIT SFE L +L
Sbjct: 70 NEW---LHDHXMQVGDAYLIVYSITDRASFEKASELRIQL-------------RRARQTE 113
Query: 113 XXPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
PI+LVGNK DL R +S EG+ A + F+E SA
Sbjct: 114 DIPIILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSA 153
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++ + +L L DTAGQ++Y +
Sbjct: 10 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 69
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE V+ + PI+L
Sbjct: 70 PLSYPQTDV--FLICFSLVSPASFENVRAKW--------------YPEVRHHCPHTPILL 113
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLA-ESWKAGFVEASA 152
VG K DL +ER+ I+Y +G +A E ++E SA
Sbjct: 114 VGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSA 160
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 26/164 (15%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYD----------LKLVD 49
+G VGK++ ++ D +F + T+ F K + Q D L+L D
Sbjct: 17 LGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWD 76
Query: 50 TAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXX 109
TAG + + + D G++L++ +TS +SF ++N
Sbjct: 77 TAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFL--------------NVRNWMSQLQAN 122
Query: 110 XXXXXP-IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
P IVL+GNK DL +R ++ + + LAE + + E SA
Sbjct: 123 AYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSA 166
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++ + +L L DTAGQ++Y +
Sbjct: 36 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 95
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE V+ + PI+L
Sbjct: 96 PLSYPQTDV--FLICFSLVSPASFENVRAKW--------------YPEVRHHCPNTPIIL 139
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
VG K DL +E++ I+Y +G +A+ A ++E SA
Sbjct: 140 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++ + +L L DTAGQ++Y +
Sbjct: 9 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 68
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE V+ + ++ N PI+L
Sbjct: 69 PLSYPQTDV--FLICFSLVSPASFENVRAKWYP--EVRHHCPN------------TPIIL 112
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
VG K DL +E++ I+Y +G +A+ A ++E SA
Sbjct: 113 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 26/160 (16%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE----NTFVKTTRMNNQDYDLKLVD---TAGQ 53
+G + VGKS+L+ F DS D E +T+ +T ++ + + L+D G+
Sbjct: 12 IGEQGVGKSTLANIFAGVH--DSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGE 69
Query: 54 DEYSIFPAQYSMDI-HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXX 112
+E+ + M + Y++VYSIT SFE L +L
Sbjct: 70 NEW---LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL-------------RRARQTE 113
Query: 113 XXPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
PI+LVGNK DL R +S EG+ A + F+E SA
Sbjct: 114 DIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSA 153
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++ + +L L DTAGQ++Y +
Sbjct: 9 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 68
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE V+ + PI+L
Sbjct: 69 PLSYPQTDV--FLICFSLVSPASFENVRAKW--------------YPEVRHHCPNTPIIL 112
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
VG K DL +E++ I+Y +G +A+ A ++E SA
Sbjct: 113 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++ + +L L DTAGQ++Y +
Sbjct: 9 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 68
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE V+ + ++ N PI+L
Sbjct: 69 PLSYPQTDV--FLICFSLVSPASFENVRAKWYP--EVRHHCPN------------TPIIL 112
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
VG K DL +E++ I+Y +G +A+ A ++E SA
Sbjct: 113 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++ + +L L DTAGQ++Y +
Sbjct: 9 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 68
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE V+ + PI+L
Sbjct: 69 PLSYPQTDV--FLICFSLVSPASFENVRAKW--------------YPEVRHHCPNTPIIL 112
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
VG K DL +E++ I+Y +G +A+ A ++E SA
Sbjct: 113 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++ + +L L DTAGQ++Y +
Sbjct: 9 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 68
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE V+ + PI+L
Sbjct: 69 PLSYPQTDV--FLICFSLVSPASFENVRAKW--------------YPEVRHHCPNTPIIL 112
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
VG K DL +E++ I+Y +G +A+ A ++E SA
Sbjct: 113 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 21/160 (13%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGK+SL Q+V+ +F + Y TI F+ K ++++ +++ DTAGQ+ +
Sbjct: 14 LGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL 73
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ VLV+ +T+ +F+ + D+ L IQ P V++
Sbjct: 74 GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL-----IQ-----ASPRDPENFPFVVL 123
Query: 120 GNKKDLHMERMISYDEGKRLAESW-----KAGFVEASAKQ 154
GNK DL ++ + + A++W + E SAK+
Sbjct: 124 GNKIDLENRQVAT-----KRAQAWCYSKNNIPYFETSAKE 158
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 26/164 (15%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYD----------LKLVD 49
+G VGK++ ++ D +F + T+ F K + Q D L+L D
Sbjct: 17 LGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWD 76
Query: 50 TAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXX 109
TAG + + + D G++L++ +TS +SF ++N
Sbjct: 77 TAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFL--------------NVRNWMSQLQAN 122
Query: 110 XXXXXP-IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
P IVL+GNK DL +R ++ + + LAE + + E SA
Sbjct: 123 AYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSA 166
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 21/160 (13%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGK+SL Q+V+ +F + Y TI F+ K ++++ +++ DTAGQ+ +
Sbjct: 14 LGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL 73
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ VLV+ +T+ +F+ + D+ L IQ P V++
Sbjct: 74 GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL-----IQ-----ASPRDPENFPFVVL 123
Query: 120 GNKKDLHMERMISYDEGKRLAESW-----KAGFVEASAKQ 154
GNK DL ++ + + A++W + E SAK+
Sbjct: 124 GNKIDLENRQVAT-----KRAQAWCYSKNNIPYFETSAKE 158
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++ + +L L DTAGQ++Y +
Sbjct: 28 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 87
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE V+ + PI+L
Sbjct: 88 PLSYPQTDV--FLICFSLVSPASFENVRAKW--------------YPEVRHHCPNTPIIL 131
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
VG K DL +E++ I+Y +G +A+ A ++E SA
Sbjct: 132 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 178
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++ + +L L DTAGQ++Y +
Sbjct: 9 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 68
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE V+ + PI+L
Sbjct: 69 PLSYPQTDV--FLICFSLVSPASFENVRAKW--------------YPEVRHHCPNTPIIL 112
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
VG K DL +E++ I+Y +G +A+ A ++E SA
Sbjct: 113 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 18/128 (14%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS-IF 59
+G +VGK+ L I + F Y PT+ + F +N +L L DTAGQ++Y+ +
Sbjct: 14 VGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLR 73
Query: 60 PAQY-SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ ++L +S+ S S+E V + L PIVL
Sbjct: 74 PLSYRGADV--FILAFSLISKASYENVSKKWIPELKHYAP--------------GVPIVL 117
Query: 119 VGNKKDLH 126
VG K DL
Sbjct: 118 VGTKLDLR 125
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++ + +L L DTAGQ++Y +
Sbjct: 19 VGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 78
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE V+ + PI+L
Sbjct: 79 PLSYPQTDV--FLICFSLVSPASFENVRAKW--------------YPEVRHHCPNTPIIL 122
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
VG K DL +E++ I+Y +G +A+ A ++E SA
Sbjct: 123 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 169
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++ + +L L DTAGQ++Y +
Sbjct: 16 VGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 75
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE V+ + PI+L
Sbjct: 76 PLSYPQTDV--FLICFSLVSPASFENVRAKW--------------YPEVRHHCPNTPIIL 119
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
VG K DL +E++ I+Y +G +A+ A ++E SA
Sbjct: 120 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 166
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 63/157 (40%), Gaps = 15/157 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS+L +F +F TI F +T + N+ ++ DTAG + Y
Sbjct: 16 IGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLERYRAI 75
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ Y G ++VY I+ S+E +L + + L+
Sbjct: 76 TSAYYRGAVGALIVYDISKSSSYENCNHWLTELRE--------------NADDNVAVGLI 121
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
GNK DL R + DE K A + F E SA D
Sbjct: 122 GNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSD 158
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 26/164 (15%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYD----------LKLVD 49
+G VGK++ ++ D +F + T+ F K + Q D L+L D
Sbjct: 17 LGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWD 76
Query: 50 TAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXX 109
TAG + + + D G++L + +TS +SF ++N
Sbjct: 77 TAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFL--------------NVRNWXSQLQAN 122
Query: 110 XXXXXP-IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
P IVL+GNK DL +R ++ + + LAE + + E SA
Sbjct: 123 AYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSA 166
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 26/164 (15%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYD----------LKLVD 49
+G VGK++ ++ D +F + T+ F K + Q D L+L D
Sbjct: 17 LGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWD 76
Query: 50 TAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXX 109
TAG + + + D G++L + +TS +SF ++N
Sbjct: 77 TAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFL--------------NVRNWXSQLQAN 122
Query: 110 XXXXXP-IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
P IVL+GNK DL +R ++ + + LAE + + E SA
Sbjct: 123 AYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSA 166
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 15/153 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS+L +F +F TI F +T + + ++ DTAGQ+ Y
Sbjct: 19 IGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAI 78
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ Y G ++VY I+ S+E +L + + L+
Sbjct: 79 TSAYYRGAVGALIVYDISKSSSYENCNHWLSELRE--------------NADDNVAVGLI 124
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
GNK DL R + +E K A+ + F E SA
Sbjct: 125 GNKSDLAHLRAVPTEESKTFAQENQLLFTETSA 157
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++ + +L L DTAGQ++Y +
Sbjct: 11 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 70
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ ++ +S+ S SFE V+ + ++ N PI+L
Sbjct: 71 PLSYPQTDVS--LICFSLVSPASFENVRAKW--YPEVRHHCPN------------TPIIL 114
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
VG K DL +E++ I+Y +G +A+ A ++E SA
Sbjct: 115 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++ + +L L DTAGQ++Y +
Sbjct: 13 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 72
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ ++ +S+ S SFE V+ + PI+L
Sbjct: 73 PLSYPQTDVS--LICFSLVSPASFENVRAKW--------------YPEVRHHCPNTPIIL 116
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
VG K DL +E++ I+Y +G +A+ A ++E SA
Sbjct: 117 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 163
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++ + +L L DTAGQ++Y +
Sbjct: 9 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 68
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ ++ +S+ S SFE V+ + ++ N PI+L
Sbjct: 69 PLSYPQTDVS--LICFSLVSPASFENVRAKWYP--EVRHHCPN------------TPIIL 112
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
VG K DL +E++ I+Y +G +A+ A ++E SA
Sbjct: 113 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++ + +L L DTAGQ++Y +
Sbjct: 9 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 68
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ ++ +S+ S SFE V+ + PI+L
Sbjct: 69 PLSYPQTDVS--LICFSLVSPASFENVRAKW--------------YPEVRHHCPNTPIIL 112
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
VG K DL +E++ I+Y +G +A+ A ++E SA
Sbjct: 113 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 21/160 (13%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGK+SL Q+V+ +F + Y TI F+ K ++++ +++ DTAGQ+ +
Sbjct: 14 LGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL 73
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ VLV+ +T+ +F+ + D+ L IQ P V++
Sbjct: 74 GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL-----IQ-----ASPRDPENFPFVVL 123
Query: 120 GNKKDLHMERMISYDEGKRLAESW-----KAGFVEASAKQ 154
GNK D ++ + + A++W + E SAK+
Sbjct: 124 GNKIDFENRQVAT-----KRAQAWCYSKNNIPYFETSAKE 158
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++++ +L L DTAGQ++Y +
Sbjct: 9 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLR 68
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S S+E V+ + PI+L
Sbjct: 69 PLSYPQTDV--FLICFSLVSPASYENVRAKW--------------FPEVRHHCPSTPIIL 112
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESW-KAGFVEASA 152
VG K DL +E++ I+Y +G LA+ ++E SA
Sbjct: 113 VGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 159
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++++ +L L DTAGQ++Y +
Sbjct: 15 VGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLR 74
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S S+E V+ + PI+L
Sbjct: 75 PLSYPQTDV--FLICFSLVSPASYENVRAKW--------------FPEVRHHCPSTPIIL 118
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
VG K DL +E++ I+Y +G LA+ + ++E SA
Sbjct: 119 VGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 165
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++++ +L L DTAGQ++Y +
Sbjct: 16 VGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLR 75
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S S+E V+ + PI+L
Sbjct: 76 PLSYPQTDV--FLICFSLVSPASYENVRAKW--------------FPEVRHHCPSTPIIL 119
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESW-KAGFVEASA 152
VG K DL +E++ I+Y +G LA+ ++E SA
Sbjct: 120 VGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 166
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 75/155 (48%), Gaps = 17/155 (10%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYD-PTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS+L+ F Q ++++ E+T+ + ++ ++ L + D Q + +
Sbjct: 18 LGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW 77
Query: 60 PAQYSMDIH-GYVLVYSITSHKSFEVVQILYDKLLDM-TGKIQNXXXXXXXXXXXXXPIV 117
+ + +++V+S+T +SF V + LL + G+ + P++
Sbjct: 78 LQDHCLQTGDAFLIVFSVTDRRSFSKVP---ETLLRLRAGRPHHDL-----------PVI 123
Query: 118 LVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
LVGNK DL R +S +EG+ LA + +E SA
Sbjct: 124 LVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSA 158
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + Y PT+ + + ++ + +L L DTAGQ++Y +
Sbjct: 36 VGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 95
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE V+ + PI+L
Sbjct: 96 PLSYPQTDV--FLICFSLVSPASFENVRAKW--------------YPEVRHHCPNTPIIL 139
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
VG K DL +E++ I+Y +G +A+ A ++E SA
Sbjct: 140 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++ + +L L DTAG ++Y +
Sbjct: 36 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR 95
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE V+ + PI+L
Sbjct: 96 PLSYPQTDV--FLICFSLVSPASFENVRAKW--------------YPEVRHHCPNTPIIL 139
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
VG K DL +E++ I+Y +G +A+ A ++E SA
Sbjct: 140 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++ + +L L DTAG ++Y +
Sbjct: 12 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR 71
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE V+ + ++ N PI+L
Sbjct: 72 PLSYPQTDV--FLICFSLVSPASFENVRAKWYP--EVRHHCPN------------TPIIL 115
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
VG K DL +E++ I+Y +G +A+ A ++E SA
Sbjct: 116 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 162
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++ + +L L DTAG ++Y +
Sbjct: 9 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR 68
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE V+ + ++ N PI+L
Sbjct: 69 PLSYPQTDV--FLICFSLVSPASFENVRAKWYP--EVRHHCPN------------TPIIL 112
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
VG K DL +E++ I+Y +G +A+ A ++E SA
Sbjct: 113 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++ + +L L DTAG ++Y +
Sbjct: 9 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR 68
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SFE V+ + ++ N PI+L
Sbjct: 69 PLSYPQTDV--FLICFSLVSPASFENVRAKWYP--EVRHHCPN------------TPIIL 112
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
VG K DL +E++ I+Y +G +A+ A ++E SA
Sbjct: 113 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 21/160 (13%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGK+SL Q+V+ +F + Y TI F+ K ++++ +++ DTAG + +
Sbjct: 14 LGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSL 73
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ VLV+ +T+ +F+ + D+ L IQ P V++
Sbjct: 74 GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL-----IQ-----ASPRDPENFPFVVL 123
Query: 120 GNKKDLHMERMISYDEGKRLAESW-----KAGFVEASAKQ 154
GNK DL ++ + + A++W + E SAK+
Sbjct: 124 GNKIDLENRQVAT-----KRAQAWCYSKNNIPYFETSAKE 158
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 29/170 (17%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G GK++L F F ++Y PT+ + + ++ Q +L L DT+G Y ++
Sbjct: 34 VGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVR 93
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
P Y D ++ + I+ ++ + V L G+IQ ++LV
Sbjct: 94 PLSYP-DSDAVLICFDISRPETLDSV------LKKWKGEIQEFCPNTK--------MLLV 138
Query: 120 GNKKDL------------HMERMISYDEGKRLAESWKAG-FVEASAKQDD 156
G K DL H + +SYD+G +A+ A ++E SA Q +
Sbjct: 139 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSE 188
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 13/145 (8%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV--KTTRMNNQDYDLKLVDTAGQDEYSI 58
+G VGK+SL ++V+ ++ Y TI F+ + T ++ +++ DTAGQ+ +
Sbjct: 14 LGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQS 73
Query: 59 FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
+ VLVY +T+ SFE ++ D+ L P V+
Sbjct: 74 LGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFL----------VHANVNSPETFPFVI 123
Query: 119 VGNKKDL-HMERMISYDEGKRLAES 142
+GNK D ++++S + LA+S
Sbjct: 124 LGNKIDAEESKKIVSEKSAQELAKS 148
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 29/170 (17%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G GK++L F F ++Y PT+ + + ++ Q +L L DT+G Y ++
Sbjct: 13 VGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVR 72
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
P Y D ++ + I+ ++ + V L G+IQ ++LV
Sbjct: 73 PLSYP-DSDAVLICFDISRPETLDSV------LKKWKGEIQEFCPNTK--------MLLV 117
Query: 120 GNKKDL------------HMERMISYDEGKRLAESWKAG-FVEASAKQDD 156
G K DL H + +SYD+G +A+ A ++E SA Q +
Sbjct: 118 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSE 167
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 18/128 (14%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS-IF 59
+G +VGK+ + I + F Y PT+ + F ++ +L L DTAGQ++Y+ +
Sbjct: 12 VGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 71
Query: 60 PAQY-SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ ++L +S+ S S+E I PIVL
Sbjct: 72 PLSYRGADV--FLLAFSLISKASYE--------------NIHKKWLPELKHYAPGIPIVL 115
Query: 119 VGNKKDLH 126
VG K DL
Sbjct: 116 VGTKLDLR 123
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 29/170 (17%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G GK++L F F ++Y PT+ + + ++ Q +L L DT+G Y ++
Sbjct: 29 VGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVR 88
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
P Y D ++ + I+ ++ + V L G+IQ ++LV
Sbjct: 89 PLSYP-DSDAVLICFDISRPETLDSV------LKKWKGEIQEFCPNTK--------MLLV 133
Query: 120 GNKKDL------------HMERMISYDEGKRLAESWKAG-FVEASAKQDD 156
G K DL H + +SYD+G +A+ A ++E SA Q +
Sbjct: 134 GCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSE 183
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 74/155 (47%), Gaps = 17/155 (10%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYD-PTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKS+L+ F Q +++ E+T+ + ++ ++ L + D Q + +
Sbjct: 8 VGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW 67
Query: 60 PAQYSMDIH-GYVLVYSITSHKSFEVVQILYDKLLDM-TGKIQNXXXXXXXXXXXXXPIV 117
+ + +++V+S+T +SF V + LL + G+ + P++
Sbjct: 68 LQDHCLQTGDAFLIVFSVTDRRSFSKVP---ETLLRLRAGRPHHDL-----------PVI 113
Query: 118 LVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
LVGNK DL R +S +EG+ LA + +E SA
Sbjct: 114 LVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSA 148
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 18/128 (14%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS-IF 59
+G +VGK+ + I + F Y PT+ + F ++ +L L DTAGQ++Y+ +
Sbjct: 12 VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLR 71
Query: 60 PAQY-SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ ++L +S+ S S+E V + L PI+L
Sbjct: 72 PLSYRGADV--FILAFSLISKASYENVAKKWIPELRHYAP--------------GVPIIL 115
Query: 119 VGNKKDLH 126
VG K DL
Sbjct: 116 VGTKLDLR 123
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 77/184 (41%), Gaps = 46/184 (25%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++ + +L L DTAGQ++Y +
Sbjct: 11 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 70
Query: 60 PAQYSMDI---HG---------------YVLVYSITSHKSFEVVQILYDKLLDMTGKIQN 101
P Y + +G +++ +S+ S SFE V+ +
Sbjct: 71 PLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKW------------ 118
Query: 102 XXXXXXXXXXXXXPIVLVGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFV 148
PI+LVG K DL +E++ I+Y +G +A+ A ++
Sbjct: 119 --YPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 176
Query: 149 EASA 152
E SA
Sbjct: 177 ECSA 180
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++ + +L L DTAG ++Y +
Sbjct: 161 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR 220
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SF V+ + PI+L
Sbjct: 221 PLSYPQTDV--FLICFSLVSPASFHHVRAKW--------------YPEVRHHCPNTPIIL 264
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
VG K DL +E++ I+Y +G +A+ A ++E SA
Sbjct: 265 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++ + +L L DTAG ++Y +
Sbjct: 161 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR 220
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SF V+ + PI+L
Sbjct: 221 PLSYPQTDV--FLICFSLVSPASFHHVRAKW--------------YPEVRHHCPNTPIIL 264
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
VG K DL +E++ I+Y +G +A+ A ++E SA
Sbjct: 265 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++ + +L L DTAG ++Y +
Sbjct: 161 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR 220
Query: 60 PAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
P Y D+ +++ +S+ S SF V+ + PI+L
Sbjct: 221 PLSYPQTDV--FLICFSLVSPASFHHVRAKW--------------YPEVRHHCPNTPIIL 264
Query: 119 VGNKKDLH-----MERM-------ISYDEGKRLAESWKA-GFVEASA 152
VG K DL +E++ I+Y +G +A+ A ++E SA
Sbjct: 265 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 19/161 (11%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV--KTTRMNNQDYDLKLVDTAGQDEYSI 58
+G + GK+SL+ F F Y TI F + T N + L++ D GQ
Sbjct: 12 LGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGK 71
Query: 59 FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIV- 117
+Y G +LVY IT+++SFE ++ Y + ++ + + P+V
Sbjct: 72 MLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESET------------QPLVA 119
Query: 118 LVGNKKDLHMERMISYDEGKRLAE--SWKAGFVEASAKQDD 156
LVGNK DL R I ++ R + + + FV SAK D
Sbjct: 120 LVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFV--SAKTGD 158
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 61/134 (45%), Gaps = 16/134 (11%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLK--LVDTAGQDEYSI 58
+G VGK++ + +DG+F +Y+ T+ T +++Q +K + DTAGQ++ ++
Sbjct: 17 IGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAV 76
Query: 59 FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVL 118
Y + G +L + +TS + + + + + G PIV+
Sbjct: 77 LKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN--------------EAPIVV 122
Query: 119 VGNKKDLHMERMIS 132
NK D+ + IS
Sbjct: 123 CANKIDIKNRQKIS 136
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 16/134 (11%)
Query: 1 MGYRSVGKSSLSIQFVD--GQFVDSYDPT--IENTFVKTTRMNNQ-DYDLKLVDTAGQDE 55
+G +VGKS+L F +F+ Y T +E T + +L L+DTAG D
Sbjct: 26 VGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDL 85
Query: 56 YSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXP 115
Y +QY ++ +LV+ ++S +SFE + ++ L +
Sbjct: 86 YKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRA---------- 135
Query: 116 IVLVGNKKDLHMER 129
VLV NK DL +R
Sbjct: 136 -VLVANKTDLPPQR 148
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKSSL ++V +F TI F+ K ++ +++ DTAGQ+ +
Sbjct: 17 LGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSL 76
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ +L +S+ +SF+ +++ + P V++
Sbjct: 77 RTPFYRGSDCCLLTFSVDDSQSFQ----------NLSNWKKEFIYYADVKEPESFPFVIL 126
Query: 120 GNKKDLHMERMISYDEGKRLAESW 143
GNK D+ ER +S +E A++W
Sbjct: 127 GNKTDIK-ERQVSTEE----AQAW 145
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 68/157 (43%), Gaps = 13/157 (8%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKSSL ++V +F TI F+ + ++ + L++ DTAGQ+ +
Sbjct: 13 LGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSL 72
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ +L +S+ +SFE ++ + P V++
Sbjct: 73 RTPFYRGADCCLLTFSVDDRQSFE----------NLGNWQKEFIYYADVKDPEHFPFVVL 122
Query: 120 GNKKDLHMERMISYDEGKRLA-ESWKAGFVEASAKQD 155
GNK D +R ++ +E + E+ ++E SAK D
Sbjct: 123 GNKVD-KEDRQVTTEEAQTWCMENGDYPYLETSAKDD 158
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 16/126 (12%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G GK++ + + G+F Y PT+ N + DTAGQ+++
Sbjct: 16 VGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL 75
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y + ++++ +TS +++ V + L+ + I PIVL
Sbjct: 76 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENI---------------PIVLC 120
Query: 120 GNKKDL 125
GNK D+
Sbjct: 121 GNKVDI 126
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKSSL ++V +F TI F+ K ++ +++ DTAGQ+ +
Sbjct: 15 LGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSL 74
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ +L +S+ +SF+ +++ + P V++
Sbjct: 75 RTPFYRGSDCCLLTFSVDDSQSFQ----------NLSNWKKEFIYYADVKEPESFPFVIL 124
Query: 120 GNKKDLHMERMISYDEGKRLAESW 143
GNK D+ ER +S +E A++W
Sbjct: 125 GNKIDIS-ERQVSTEE----AQAW 143
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 16/126 (12%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G GK++ + + G+F Y PT+ N + DTAGQ+++
Sbjct: 16 VGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL 75
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y + ++++ +TS +++ V + L+ + I PIVL
Sbjct: 76 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENI---------------PIVLC 120
Query: 120 GNKKDL 125
GNK D+
Sbjct: 121 GNKVDI 126
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G VGKSSL ++V +F TI F+ K ++ +++ DTAGQ+ +
Sbjct: 13 LGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSL 72
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
+ +L +S+ +SF+ +++ + P V++
Sbjct: 73 RTPFYRGSDCCLLTFSVDDSQSFQ----------NLSNWKKEFIYYADVKEPESFPFVIL 122
Query: 120 GNKKDLHMERMISYDEGKRLAESW 143
GNK D+ ER +S +E A++W
Sbjct: 123 GNKIDIS-ERQVSTEE----AQAW 141
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 34.3 bits (77), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G + GK++ GQF + PT+ K T+ N +K+ D GQ +
Sbjct: 28 VGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGN---VTIKIWDIGGQPRFRSMW 84
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
+Y ++ V + + E + LLD ++Q P++++G
Sbjct: 85 ERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKP-QLQG------------IPVLVLG 131
Query: 121 NKKDL 125
NK+DL
Sbjct: 132 NKRDL 136
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 16/125 (12%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G + GK++ GQF + PT+ K T+ N +KL D GQ +
Sbjct: 37 VGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN---VTIKLWDIGGQPRFRSMW 93
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
+Y + V + + E + LLD ++Q P++++G
Sbjct: 94 ERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP-QLQG------------IPVLVLG 140
Query: 121 NKKDL 125
NK+DL
Sbjct: 141 NKRDL 145
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 16/125 (12%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G + GK++ GQF + PT+ K T+ N +KL D GQ +
Sbjct: 28 VGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN---VTIKLWDIGGQPRFRSMW 84
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVG 120
+Y + V + + E + LLD ++Q P++++G
Sbjct: 85 ERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKP-QLQG------------IPVLVLG 131
Query: 121 NKKDL 125
NK+DL
Sbjct: 132 NKRDL 136
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 16/126 (12%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G GK++ + + G+F Y T+ N + DTAGQ++Y
Sbjct: 16 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKYGGL 75
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y + ++++ +TS +++ V + L+ + I PIVL
Sbjct: 76 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENI---------------PIVLC 120
Query: 120 GNKKDL 125
GNK D+
Sbjct: 121 GNKVDI 126
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 16/126 (12%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G GK++ + + G+F Y T+ N + DTAGQ+++
Sbjct: 16 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL 75
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y + ++++ +TS +++ V + L+ + I PIVL
Sbjct: 76 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENI---------------PIVLC 120
Query: 120 GNKKDL 125
GNK D+
Sbjct: 121 GNKVDI 126
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 16/126 (12%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G GK++ + + G+F Y T+ N + DTAGQ+++
Sbjct: 16 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL 75
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y + ++++ +TS +++ V + L+ + I PIVL
Sbjct: 76 EDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENI---------------PIVLC 120
Query: 120 GNKKDL 125
GNK D+
Sbjct: 121 GNKVDI 126
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 16/126 (12%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G GK++ + + G+F Y T+ N + DTAGQ+++
Sbjct: 21 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL 80
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y + ++++ +TS +++ V + L+ + I PIVL
Sbjct: 81 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENI---------------PIVLC 125
Query: 120 GNKKDL 125
GNK D+
Sbjct: 126 GNKVDI 131
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 16/126 (12%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G GK++ + + G+F Y T+ N + DTAGQ+++
Sbjct: 9 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL 68
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y + ++++ +TS +++ V + L+ + I PIVL
Sbjct: 69 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENI---------------PIVLC 113
Query: 120 GNKKDL 125
GNK D+
Sbjct: 114 GNKVDI 119
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 16/126 (12%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G GK++ + + G+F Y T+ N + DTAGQ+++
Sbjct: 16 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL 75
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y + ++++ +TS +++ V + L+ + I PIVL
Sbjct: 76 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENI---------------PIVLC 120
Query: 120 GNKKDL 125
GNK D+
Sbjct: 121 GNKVDI 126
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 16/126 (12%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G GK++ + + G+F Y T+ N + DTAGQ+++
Sbjct: 16 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL 75
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y + ++++ +TS +++ V + L+ + I PIVL
Sbjct: 76 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENI---------------PIVLC 120
Query: 120 GNKKDL 125
GNK D+
Sbjct: 121 GNKVDI 126
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 67/162 (41%), Gaps = 31/162 (19%)
Query: 6 VGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQYS 64
GK+++ + ++Y PT+ + Q +L L DT+G Y ++ P YS
Sbjct: 38 CGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYS 97
Query: 65 MDIHGYVLVYSITSHKSFE-VVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKK 123
D +L + I+ ++ + ++ ++LD + ++L+G K
Sbjct: 98 -DSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR---------------VLLIGCKT 141
Query: 124 DLHM------------ERMISYDEGKRLAESWKAG-FVEASA 152
DL + ISY++G +A+ A ++E SA
Sbjct: 142 DLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 183
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 67/162 (41%), Gaps = 31/162 (19%)
Query: 6 VGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQYS 64
GK+++ + ++Y PT+ + Q +L L DT+G Y ++ P YS
Sbjct: 21 CGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYS 80
Query: 65 MDIHGYVLVYSITSHKSFE-VVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKK 123
D +L + I+ ++ + ++ ++LD + ++L+G K
Sbjct: 81 -DSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR---------------VLLIGCKT 124
Query: 124 DLHM------------ERMISYDEGKRLAESWKAG-FVEASA 152
DL + ISY++G +A+ A ++E SA
Sbjct: 125 DLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 166
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 16/126 (12%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G GK++ + + G+F Y T+ N + DTAGQ+++
Sbjct: 16 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL 75
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y + ++ + +TS +++ V + L+ + I PIVL
Sbjct: 76 RDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCENI---------------PIVLC 120
Query: 120 GNKKDL 125
GNK D+
Sbjct: 121 GNKVDI 126
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 67/162 (41%), Gaps = 31/162 (19%)
Query: 6 VGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQYS 64
GK+++ + ++Y PT+ + Q +L L DT+G Y ++ P YS
Sbjct: 22 CGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYS 81
Query: 65 MDIHGYVLVYSITSHKSFE-VVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLVGNKK 123
D +L + I+ ++ + ++ ++LD + ++L+G K
Sbjct: 82 -DSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR---------------VLLIGCKT 125
Query: 124 DLHM------------ERMISYDEGKRLAESWKAG-FVEASA 152
DL + ISY++G +A+ A ++E SA
Sbjct: 126 DLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 167
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 15/77 (19%)
Query: 49 DTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXX 108
DTAGQ+++ Y + ++++ +TS +++ V + L+ + I
Sbjct: 70 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENI--------- 120
Query: 109 XXXXXXPIVLVGNKKDL 125
PIVL GNK D+
Sbjct: 121 ------PIVLCGNKVDI 131
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 16/126 (12%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G GK++ + + G+F Y T+ N + DTAG +++
Sbjct: 18 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGL 77
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y + ++++ +TS +++ V + L+ + I PIVL
Sbjct: 78 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENI---------------PIVLC 122
Query: 120 GNKKDL 125
GNK D+
Sbjct: 123 GNKVDI 128
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 16/126 (12%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G GK++ + + G+F Y T+ N + DTAG +++
Sbjct: 12 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGL 71
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y + ++++ +TS +++ V + L+ + I PIVL
Sbjct: 72 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENI---------------PIVLC 116
Query: 120 GNKKDL 125
GNK D+
Sbjct: 117 GNKVDI 122
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 8 KSSLSIQFV-------DGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI-- 58
S+L ++F D QFV DP + + + NQ YDL L+ +GQ + I
Sbjct: 555 NSTLQVKFSTNLSTLKDPQFV-VVDPLLRGVYGRVAYARNQTYDLSLL--SGQISFGIQT 611
Query: 59 -FPAQYSMDIHGYV 71
PA + I G V
Sbjct: 612 LLPAATDITIQGTV 625
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 16/126 (12%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIF 59
+G GK++ + + G+F Y T+ N + DTAG +++
Sbjct: 16 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGL 75
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNXXXXXXXXXXXXXPIVLV 119
Y + ++++ +TS +++ V + L+ + I PIVL
Sbjct: 76 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENI---------------PIVLC 120
Query: 120 GNKKDL 125
GNK D+
Sbjct: 121 GNKVDI 126
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 7 GKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMD 66
GKSSL +F+ G + + T + K ++ Q + + + + AG + A++S
Sbjct: 19 GKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGW 72
Query: 67 IHGYVLVYSITSHKSFEVVQILYDKLLDMTGK 98
+ V+S+ SF+ V L+ +L + G+
Sbjct: 73 ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGE 104
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 7 GKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMD 66
GKSSL +F+ G + + T + K ++ Q + + + + AG + A++S
Sbjct: 19 GKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGW 72
Query: 67 IHGYVLVYSITSHKSFEVVQILYDKLLDMTGK 98
+ V+S+ SF+ V L+ +L + G+
Sbjct: 73 ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGE 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,242,155
Number of Sequences: 62578
Number of extensions: 148814
Number of successful extensions: 940
Number of sequences better than 100.0: 294
Number of HSP's better than 100.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 375
Number of HSP's gapped (non-prelim): 301
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)