Query psy1873
Match_columns 157
No_of_seqs 113 out of 1231
Neff 10.3
Searched_HMMs 46136
Date Fri Aug 16 18:30:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1873.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1873hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 1.7E-43 3.6E-48 232.7 13.6 143 1-157 15-159 (205)
2 KOG0092|consensus 100.0 2.8E-42 6E-47 226.2 14.1 143 1-157 11-154 (200)
3 KOG0078|consensus 100.0 1.7E-41 3.7E-46 226.0 14.0 143 1-157 18-161 (207)
4 KOG0094|consensus 100.0 2.6E-41 5.7E-46 221.9 12.8 144 1-157 28-172 (221)
5 KOG0098|consensus 100.0 4.5E-41 9.7E-46 219.2 11.5 143 1-157 12-155 (216)
6 KOG0394|consensus 100.0 1.7E-39 3.7E-44 211.4 12.4 147 1-157 15-165 (210)
7 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.1E-38 2.5E-43 215.5 15.9 142 1-157 11-166 (182)
8 KOG0079|consensus 100.0 1.8E-39 3.9E-44 204.6 10.9 142 1-157 14-156 (198)
9 KOG0080|consensus 100.0 2.4E-39 5.2E-44 206.6 11.3 144 1-157 17-161 (209)
10 cd04120 Rab12 Rab12 subfamily. 100.0 2.4E-38 5.2E-43 216.8 16.4 143 1-157 6-150 (202)
11 cd04133 Rop_like Rop subfamily 100.0 4.1E-38 8.8E-43 211.7 16.8 142 1-157 7-160 (176)
12 cd04131 Rnd Rnd subfamily. Th 100.0 4.5E-38 9.8E-43 212.1 16.0 142 1-157 7-162 (178)
13 cd04121 Rab40 Rab40 subfamily. 100.0 9.3E-38 2E-42 212.1 16.2 142 1-157 12-154 (189)
14 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 3.8E-37 8.3E-42 214.3 16.3 141 1-156 19-173 (232)
15 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 5.2E-37 1.1E-41 206.0 15.9 144 1-157 8-151 (172)
16 cd01875 RhoG RhoG subfamily. 100.0 5.3E-37 1.2E-41 209.1 16.2 142 1-157 9-164 (191)
17 KOG0093|consensus 100.0 1E-37 2.2E-42 196.4 11.0 143 1-157 27-170 (193)
18 KOG0081|consensus 100.0 2.7E-38 6E-43 201.6 7.9 144 1-157 15-168 (219)
19 KOG0087|consensus 100.0 2.1E-37 4.6E-42 205.8 12.1 143 1-157 20-163 (222)
20 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.5E-36 3.3E-41 204.2 16.3 142 1-157 7-162 (175)
21 KOG0086|consensus 100.0 1.8E-37 3.8E-42 196.8 10.1 143 1-157 15-158 (214)
22 KOG0083|consensus 100.0 3E-38 6.4E-43 196.2 6.2 143 1-157 3-147 (192)
23 cd04136 Rap_like Rap-like subf 100.0 7E-36 1.5E-40 198.4 17.0 144 1-157 7-150 (163)
24 cd04122 Rab14 Rab14 subfamily. 100.0 5.5E-36 1.2E-40 199.9 16.0 143 1-157 8-151 (166)
25 cd04175 Rap1 Rap1 subgroup. T 100.0 1.2E-35 2.6E-40 197.8 16.9 144 1-157 7-150 (164)
26 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 9.4E-36 2E-40 206.3 16.3 142 1-157 7-162 (222)
27 cd04117 Rab15 Rab15 subfamily. 100.0 1.5E-35 3.2E-40 197.0 16.3 143 1-157 6-149 (161)
28 PTZ00369 Ras-like protein; Pro 100.0 3E-35 6.6E-40 200.2 16.9 144 1-157 11-154 (189)
29 cd04144 Ras2 Ras2 subfamily. 100.0 2.6E-35 5.6E-40 200.7 15.9 146 1-157 5-150 (190)
30 cd01871 Rac1_like Rac1-like su 100.0 4.4E-35 9.5E-40 197.0 16.6 142 1-157 7-162 (174)
31 cd04176 Rap2 Rap2 subgroup. T 100.0 7.2E-35 1.6E-39 193.8 16.8 144 1-157 7-150 (163)
32 cd01865 Rab3 Rab3 subfamily. 100.0 6E-35 1.3E-39 194.7 16.2 143 1-157 7-150 (165)
33 PF00071 Ras: Ras family; Int 100.0 2.7E-35 5.9E-40 195.6 14.3 143 1-157 5-148 (162)
34 smart00176 RAN Ran (Ras-relate 100.0 9.2E-35 2E-39 198.9 16.7 140 1-157 1-141 (200)
35 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.4E-34 3.1E-39 198.7 17.0 147 1-157 6-155 (201)
36 cd04127 Rab27A Rab27a subfamil 100.0 7E-35 1.5E-39 196.8 15.2 144 1-157 10-164 (180)
37 cd04134 Rho3 Rho3 subfamily. 100.0 1.2E-34 2.6E-39 197.3 16.3 142 1-157 6-161 (189)
38 cd04128 Spg1 Spg1p. Spg1p (se 100.0 9E-35 2E-39 196.7 15.5 142 1-157 6-153 (182)
39 cd04140 ARHI_like ARHI subfami 100.0 2.4E-34 5.1E-39 191.8 17.3 146 1-157 7-152 (165)
40 KOG0088|consensus 100.0 2.2E-36 4.8E-41 192.7 7.1 143 1-157 19-162 (218)
41 smart00173 RAS Ras subfamily o 100.0 2E-34 4.3E-39 191.8 16.7 144 1-157 6-149 (164)
42 KOG0091|consensus 100.0 7.5E-36 1.6E-40 191.1 9.2 144 1-157 14-160 (213)
43 cd04138 H_N_K_Ras_like H-Ras/N 100.0 2.8E-34 6.1E-39 190.3 16.9 143 1-157 7-149 (162)
44 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 2E-34 4.4E-39 193.1 16.0 144 1-157 6-152 (170)
45 smart00174 RHO Rho (Ras homolo 100.0 2.5E-34 5.4E-39 193.1 16.3 142 1-157 4-159 (174)
46 cd01867 Rab8_Rab10_Rab13_like 100.0 2.7E-34 5.8E-39 191.9 16.1 143 1-157 9-152 (167)
47 cd04119 RJL RJL (RabJ-Like) su 100.0 2.7E-34 5.8E-39 191.4 15.7 148 1-157 6-154 (168)
48 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 3.8E-34 8.3E-39 190.9 16.0 143 1-157 8-151 (166)
49 cd04145 M_R_Ras_like M-Ras/R-R 100.0 7.4E-34 1.6E-38 188.9 17.0 144 1-157 8-151 (164)
50 cd04109 Rab28 Rab28 subfamily. 100.0 6.1E-34 1.3E-38 197.4 16.1 146 1-157 6-153 (215)
51 KOG0097|consensus 100.0 5.2E-35 1.1E-39 183.6 9.5 143 1-157 17-160 (215)
52 cd01873 RhoBTB RhoBTB subfamil 100.0 8.4E-34 1.8E-38 193.6 16.1 140 1-157 8-183 (195)
53 cd01868 Rab11_like Rab11-like. 100.0 9.6E-34 2.1E-38 188.7 15.7 143 1-157 9-152 (165)
54 cd04111 Rab39 Rab39 subfamily. 100.0 1E-33 2.2E-38 195.6 16.0 144 1-157 8-153 (211)
55 KOG0395|consensus 100.0 6.5E-34 1.4E-38 193.5 14.6 144 1-157 9-152 (196)
56 cd04110 Rab35 Rab35 subfamily. 100.0 1.6E-33 3.5E-38 193.1 16.5 142 1-157 12-154 (199)
57 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.9E-33 4E-38 188.9 16.3 142 1-157 6-161 (173)
58 cd04126 Rab20 Rab20 subfamily. 100.0 1.5E-33 3.3E-38 195.2 16.3 139 1-157 6-177 (220)
59 cd04125 RabA_like RabA-like su 100.0 1.9E-33 4.1E-38 191.2 16.4 143 1-157 6-149 (188)
60 cd04103 Centaurin_gamma Centau 100.0 2.2E-33 4.7E-38 186.0 16.1 138 1-157 6-146 (158)
61 PLN03071 GTP-binding nuclear p 100.0 1.4E-33 3.1E-38 195.8 15.9 140 1-157 19-159 (219)
62 cd04106 Rab23_lke Rab23-like s 100.0 1.6E-33 3.4E-38 187.0 15.2 142 1-157 6-150 (162)
63 cd04116 Rab9 Rab9 subfamily. 100.0 2.7E-33 5.9E-38 187.4 16.2 146 1-157 11-158 (170)
64 cd04115 Rab33B_Rab33A Rab33B/R 100.0 3E-33 6.4E-38 187.4 15.5 142 1-155 8-151 (170)
65 cd04113 Rab4 Rab4 subfamily. 100.0 3.4E-33 7.4E-38 185.4 15.7 143 1-157 6-149 (161)
66 cd04112 Rab26 Rab26 subfamily. 100.0 3.3E-33 7.2E-38 190.5 16.0 143 1-157 6-150 (191)
67 cd04132 Rho4_like Rho4-like su 100.0 2.9E-33 6.3E-38 190.0 15.4 142 1-157 6-154 (187)
68 KOG0095|consensus 100.0 2.3E-34 4.9E-39 182.0 9.2 143 1-157 13-156 (213)
69 PLN03110 Rab GTPase; Provision 100.0 3.1E-33 6.8E-38 193.8 15.8 143 1-157 18-161 (216)
70 cd01866 Rab2 Rab2 subfamily. 100.0 6.2E-33 1.4E-37 185.5 16.3 143 1-157 10-153 (168)
71 cd01864 Rab19 Rab19 subfamily. 100.0 4.9E-33 1.1E-37 185.4 15.6 143 1-157 9-153 (165)
72 cd04177 RSR1 RSR1 subgroup. R 100.0 8.8E-33 1.9E-37 184.8 16.9 144 1-157 7-151 (168)
73 cd04146 RERG_RasL11_like RERG/ 100.0 5.1E-33 1.1E-37 185.3 15.4 143 1-156 5-149 (165)
74 cd04143 Rhes_like Rhes_like su 100.0 7.6E-33 1.6E-37 194.9 16.2 152 1-157 6-158 (247)
75 cd00877 Ran Ran (Ras-related n 100.0 1.9E-32 4.2E-37 182.9 16.4 140 1-157 6-146 (166)
76 cd04142 RRP22 RRP22 subfamily. 100.0 2.1E-32 4.6E-37 187.2 16.9 144 1-157 6-161 (198)
77 PLN03108 Rab family protein; P 100.0 2.1E-32 4.6E-37 189.0 16.2 143 1-157 12-155 (210)
78 cd04135 Tc10 TC10 subfamily. 100.0 5.4E-32 1.2E-36 181.7 16.7 142 1-157 6-161 (174)
79 cd04118 Rab24 Rab24 subfamily. 100.0 5.3E-32 1.1E-36 184.7 16.8 142 1-157 6-153 (193)
80 cd01861 Rab6 Rab6 subfamily. 100.0 4.3E-32 9.3E-37 179.9 15.9 143 1-157 6-149 (161)
81 cd04124 RabL2 RabL2 subfamily. 100.0 6.1E-32 1.3E-36 179.6 16.2 139 1-157 6-145 (161)
82 cd01860 Rab5_related Rab5-rela 100.0 7.4E-32 1.6E-36 179.1 16.0 143 1-157 7-150 (163)
83 KOG0393|consensus 100.0 7E-33 1.5E-37 185.4 11.0 142 1-157 10-166 (198)
84 cd01892 Miro2 Miro2 subfamily. 100.0 3.5E-32 7.7E-37 182.1 14.3 141 1-157 10-153 (169)
85 smart00175 RAB Rab subfamily o 100.0 8.6E-32 1.9E-36 178.9 15.6 143 1-157 6-149 (164)
86 cd04101 RabL4 RabL4 (Rab-like4 100.0 9.5E-32 2.1E-36 178.9 15.2 142 1-157 6-151 (164)
87 cd04139 RalA_RalB RalA/RalB su 100.0 2.3E-31 4.9E-36 176.7 16.3 144 1-157 6-149 (164)
88 cd04148 RGK RGK subfamily. Th 100.0 2.1E-31 4.5E-36 185.2 16.7 142 1-157 6-150 (221)
89 cd01863 Rab18 Rab18 subfamily. 100.0 4.2E-31 9E-36 175.3 16.9 143 1-157 6-149 (161)
90 cd04102 RabL3 RabL3 (Rab-like3 100.0 2.4E-31 5.2E-36 182.0 15.2 155 1-155 6-175 (202)
91 PLN03118 Rab family protein; P 100.0 4.8E-31 1E-35 182.4 16.6 143 1-157 20-164 (211)
92 cd04123 Rab21 Rab21 subfamily. 100.0 5.3E-31 1.1E-35 174.5 16.0 143 1-157 6-149 (162)
93 cd01870 RhoA_like RhoA-like su 100.0 7.2E-31 1.6E-35 176.4 16.7 142 1-157 7-162 (175)
94 cd01862 Rab7 Rab7 subfamily. 100.0 1.2E-30 2.6E-35 174.6 16.1 147 1-157 6-154 (172)
95 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 8.1E-32 1.8E-36 179.5 9.8 136 1-154 5-144 (164)
96 cd04137 RheB Rheb (Ras Homolog 100.0 1E-30 2.2E-35 176.5 15.3 144 1-157 7-150 (180)
97 cd04129 Rho2 Rho2 subfamily. 100.0 2.2E-30 4.7E-35 176.1 16.5 142 1-157 7-160 (187)
98 cd00876 Ras Ras family. The R 100.0 2.1E-30 4.5E-35 171.4 15.9 144 1-157 5-148 (160)
99 cd04147 Ras_dva Ras-dva subfam 100.0 4.1E-30 8.9E-35 176.1 16.2 144 1-157 5-150 (198)
100 cd04114 Rab30 Rab30 subfamily. 100.0 7.3E-30 1.6E-34 170.5 16.2 143 1-157 13-156 (169)
101 cd00157 Rho Rho (Ras homology) 100.0 8.8E-30 1.9E-34 170.3 16.3 142 1-157 6-160 (171)
102 cd04149 Arf6 Arf6 subfamily. 100.0 1.2E-30 2.6E-35 174.5 11.7 138 1-157 15-157 (168)
103 cd00154 Rab Rab family. Rab G 100.0 1.4E-29 3E-34 166.7 15.4 143 1-157 6-149 (159)
104 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.5E-30 3.2E-35 172.6 9.6 138 1-157 6-148 (159)
105 cd04158 ARD1 ARD1 subfamily. 100.0 9.3E-30 2E-34 170.3 12.9 138 1-157 5-148 (169)
106 PLN00223 ADP-ribosylation fact 100.0 1.4E-29 3.1E-34 171.2 12.4 135 1-157 23-165 (181)
107 smart00177 ARF ARF-like small 100.0 5.7E-30 1.2E-34 172.3 9.8 138 1-157 19-161 (175)
108 PLN00023 GTP-binding protein; 100.0 6E-29 1.3E-33 178.4 15.3 143 1-145 27-189 (334)
109 cd01893 Miro1 Miro1 subfamily. 100.0 1.2E-28 2.7E-33 164.4 15.1 141 1-157 6-151 (166)
110 cd04154 Arl2 Arl2 subfamily. 100.0 7.7E-29 1.7E-33 166.4 13.3 138 1-157 20-162 (173)
111 PTZ00099 rab6; Provisional 100.0 2.7E-28 5.8E-33 164.1 15.2 126 18-157 3-129 (176)
112 PTZ00133 ADP-ribosylation fact 100.0 2.1E-29 4.5E-34 170.5 9.3 138 1-157 23-165 (182)
113 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 3.1E-28 6.8E-33 164.9 13.6 141 1-157 9-157 (183)
114 cd04161 Arl2l1_Arl13_like Arl2 100.0 5.2E-29 1.1E-33 166.5 9.0 138 1-155 5-148 (167)
115 PTZ00132 GTP-binding nuclear p 100.0 1.2E-27 2.5E-32 165.9 16.1 140 1-157 15-155 (215)
116 cd04157 Arl6 Arl6 subfamily. 100.0 2.6E-28 5.6E-33 161.9 10.0 141 1-157 5-151 (162)
117 cd04156 ARLTS1 ARLTS1 subfamil 100.0 6.2E-28 1.3E-32 159.9 11.6 139 1-157 5-149 (160)
118 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 3.1E-28 6.7E-33 163.7 9.8 138 1-157 21-163 (174)
119 cd04151 Arl1 Arl1 subfamily. 100.0 7.4E-28 1.6E-32 159.4 9.5 138 1-157 5-147 (158)
120 cd00878 Arf_Arl Arf (ADP-ribos 99.9 2.7E-27 5.8E-32 156.6 10.6 138 1-157 5-147 (158)
121 cd00879 Sar1 Sar1 subfamily. 99.9 9.4E-27 2E-31 158.4 12.9 138 1-157 25-178 (190)
122 cd04160 Arfrp1 Arfrp1 subfamil 99.9 1.5E-26 3.3E-31 154.2 13.2 139 1-157 5-156 (167)
123 cd04159 Arl10_like Arl10-like 99.9 1.9E-26 4E-31 151.9 11.0 139 1-157 5-148 (159)
124 KOG4252|consensus 99.9 1.5E-28 3.3E-33 160.0 0.6 142 1-157 26-168 (246)
125 KOG0073|consensus 99.9 1.3E-25 2.8E-30 144.1 12.3 138 1-157 22-165 (185)
126 PF00025 Arf: ADP-ribosylation 99.9 8.3E-26 1.8E-30 152.0 11.3 138 1-157 20-163 (175)
127 smart00178 SAR Sar1p-like memb 99.9 1E-25 2.2E-30 152.8 11.6 138 1-157 23-172 (184)
128 KOG0070|consensus 99.9 1.7E-25 3.7E-30 146.6 8.5 140 1-157 23-165 (181)
129 cd01890 LepA LepA subfamily. 99.9 3.1E-24 6.6E-29 144.6 12.7 137 1-157 6-164 (179)
130 cd00882 Ras_like_GTPase Ras-li 99.9 1.8E-23 3.9E-28 136.0 15.7 144 1-157 2-147 (157)
131 COG1100 GTPase SAR1 and relate 99.9 4.8E-24 1E-28 148.0 13.1 143 1-157 11-172 (219)
132 TIGR00231 small_GTP small GTP- 99.9 1.6E-23 3.4E-28 137.5 14.2 142 1-157 7-151 (161)
133 cd01897 NOG NOG1 is a nucleola 99.9 1.1E-23 2.3E-28 140.6 12.7 138 1-157 6-155 (168)
134 cd04155 Arl3 Arl3 subfamily. 99.9 1.7E-23 3.6E-28 140.3 13.0 135 1-157 20-162 (173)
135 cd01898 Obg Obg subfamily. Th 99.9 1.4E-23 3.1E-28 140.1 12.6 143 1-157 6-158 (170)
136 TIGR02528 EutP ethanolamine ut 99.9 1.7E-24 3.7E-29 140.9 7.3 121 1-157 6-132 (142)
137 cd01891 TypA_BipA TypA (tyrosi 99.9 5.2E-24 1.1E-28 145.5 9.7 139 1-157 8-169 (194)
138 cd01879 FeoB Ferrous iron tran 99.9 5.9E-23 1.3E-27 135.5 14.3 134 1-157 2-144 (158)
139 PF08477 Miro: Miro-like prote 99.9 1.9E-23 4.2E-28 132.0 10.9 112 1-124 5-119 (119)
140 cd04171 SelB SelB subfamily. 99.9 2.5E-23 5.4E-28 138.0 11.5 135 1-157 6-153 (164)
141 KOG0075|consensus 99.9 1.4E-24 3E-29 137.1 4.8 139 1-157 26-169 (186)
142 PRK12299 obgE GTPase CgtA; Rev 99.9 4.6E-23 9.9E-28 150.7 13.3 144 1-157 164-315 (335)
143 cd01881 Obg_like The Obg-like 99.9 1E-22 2.2E-27 136.6 12.2 149 1-157 2-164 (176)
144 KOG1673|consensus 99.9 3.8E-23 8.2E-28 131.9 8.2 142 1-157 26-173 (205)
145 TIGR02729 Obg_CgtA Obg family 99.9 1E-21 2.2E-26 143.4 14.3 143 1-157 163-316 (329)
146 cd01878 HflX HflX subfamily. 99.9 3.8E-22 8.2E-27 137.2 10.4 136 1-157 47-192 (204)
147 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 5.8E-22 1.3E-26 132.0 10.8 139 1-157 6-153 (168)
148 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.2E-21 2.5E-26 148.0 13.3 128 1-155 209-346 (442)
149 KOG3883|consensus 99.9 2.8E-21 6E-26 123.1 12.5 142 1-155 15-160 (198)
150 cd01894 EngA1 EngA1 subfamily. 99.9 5.2E-21 1.1E-25 125.9 12.8 132 1-157 3-145 (157)
151 PRK04213 GTP-binding protein; 99.9 4.3E-22 9.3E-27 136.6 7.2 133 1-157 15-179 (201)
152 PRK03003 GTP-binding protein D 99.9 1.7E-21 3.7E-26 148.8 11.0 137 1-157 217-369 (472)
153 cd04105 SR_beta Signal recogni 99.9 2.7E-21 5.8E-26 132.9 10.9 116 1-127 6-123 (203)
154 PRK15494 era GTPase Era; Provi 99.9 1E-20 2.3E-25 138.9 14.3 134 1-157 58-203 (339)
155 TIGR03156 GTP_HflX GTP-binding 99.9 3.7E-21 7.9E-26 141.6 11.6 135 1-157 195-339 (351)
156 TIGR00436 era GTP-binding prot 99.9 1.2E-20 2.5E-25 135.0 13.8 135 1-157 6-151 (270)
157 KOG0071|consensus 99.9 1.5E-21 3.2E-26 122.6 7.7 138 1-157 23-165 (180)
158 TIGR00437 feoB ferrous iron tr 99.9 1.1E-20 2.3E-25 147.3 13.3 133 2-157 1-142 (591)
159 PRK12297 obgE GTPase CgtA; Rev 99.9 3.1E-20 6.7E-25 139.1 15.0 140 1-157 164-314 (424)
160 KOG4423|consensus 99.9 2.1E-23 4.5E-28 136.7 -2.4 147 1-157 31-181 (229)
161 PRK05291 trmE tRNA modificatio 99.8 1.3E-20 2.7E-25 143.0 11.9 127 1-157 221-357 (449)
162 TIGR03598 GTPase_YsxC ribosome 99.8 2E-20 4.3E-25 126.3 10.9 136 1-157 24-177 (179)
163 KOG0096|consensus 99.8 5.9E-21 1.3E-25 125.5 7.7 140 1-157 16-156 (216)
164 cd04164 trmE TrmE (MnmE, ThdF, 99.8 9.2E-20 2E-24 119.9 12.7 128 1-157 7-144 (157)
165 TIGR01393 lepA GTP-binding pro 99.8 4.3E-20 9.3E-25 143.9 12.9 137 1-157 9-167 (595)
166 PF02421 FeoB_N: Ferrous iron 99.8 3E-20 6.5E-25 121.6 10.0 134 1-157 6-148 (156)
167 TIGR03594 GTPase_EngA ribosome 99.8 1.1E-19 2.3E-24 137.8 14.4 136 1-157 178-331 (429)
168 PRK03003 GTP-binding protein D 99.8 7.9E-20 1.7E-24 139.7 12.2 132 1-157 44-186 (472)
169 PRK15467 ethanolamine utilizat 99.8 3.6E-20 7.9E-25 122.6 8.9 122 1-157 7-134 (158)
170 TIGR00487 IF-2 translation ini 99.8 2.7E-19 5.8E-24 139.1 14.4 135 1-157 93-237 (587)
171 PRK11058 GTPase HflX; Provisio 99.8 2.7E-19 5.8E-24 134.6 13.9 137 1-157 203-349 (426)
172 cd04163 Era Era subfamily. Er 99.8 2.6E-19 5.6E-24 118.5 11.9 137 1-157 9-156 (168)
173 PRK12296 obgE GTPase CgtA; Rev 99.8 3.1E-19 6.8E-24 135.5 13.2 151 1-157 165-327 (500)
174 cd00880 Era_like Era (E. coli 99.8 3.3E-19 7.2E-24 116.9 11.8 138 1-157 2-151 (163)
175 cd01895 EngA2 EngA2 subfamily. 99.8 8.9E-19 1.9E-23 116.8 14.0 137 1-157 8-162 (174)
176 KOG0076|consensus 99.8 2.5E-20 5.4E-25 121.0 5.7 141 1-157 23-174 (197)
177 TIGR00475 selB selenocysteine- 99.8 2.7E-19 5.8E-24 139.4 12.5 134 1-157 6-153 (581)
178 cd00881 GTP_translation_factor 99.8 2E-19 4.2E-24 121.8 10.3 139 1-157 5-174 (189)
179 cd01889 SelB_euk SelB subfamil 99.8 2.1E-19 4.6E-24 122.5 10.0 139 1-157 6-173 (192)
180 PRK00089 era GTPase Era; Revie 99.8 4.8E-19 1E-23 128.0 12.4 137 1-157 11-158 (292)
181 KOG0074|consensus 99.8 2.3E-19 5.1E-24 112.9 9.1 140 1-157 23-166 (185)
182 PRK00093 GTP-binding protein D 99.8 4.4E-19 9.6E-24 134.6 12.4 130 1-157 7-149 (435)
183 PRK00454 engB GTP-binding prot 99.8 6.3E-19 1.4E-23 120.3 11.2 137 1-157 30-181 (196)
184 PRK12298 obgE GTPase CgtA; Rev 99.8 1.3E-18 2.8E-23 129.6 13.5 143 1-157 165-320 (390)
185 CHL00189 infB translation init 99.8 7.4E-19 1.6E-23 138.7 12.1 133 1-157 250-397 (742)
186 PRK05306 infB translation init 99.8 1.5E-18 3.3E-23 138.0 12.7 134 1-157 296-439 (787)
187 TIGR03594 GTPase_EngA ribosome 99.8 1.5E-18 3.2E-23 131.5 12.1 132 1-157 5-147 (429)
188 PRK09554 feoB ferrous iron tra 99.8 5.3E-18 1.1E-22 135.3 14.2 135 1-157 9-155 (772)
189 KOG0072|consensus 99.8 4.6E-19 1E-23 111.9 6.0 138 1-157 24-166 (182)
190 PRK09518 bifunctional cytidyla 99.8 2.3E-18 5E-23 137.2 11.4 135 1-157 456-608 (712)
191 TIGR00491 aIF-2 translation in 99.8 3.6E-18 7.7E-23 132.7 10.8 105 1-126 10-134 (590)
192 cd01896 DRG The developmentall 99.8 2.8E-17 6.2E-22 115.1 13.9 78 1-80 6-91 (233)
193 PRK00093 GTP-binding protein D 99.8 1.2E-17 2.7E-22 126.7 13.0 136 1-157 179-331 (435)
194 COG2229 Predicted GTPase [Gene 99.8 1.4E-17 3E-22 109.4 10.9 136 1-157 16-165 (187)
195 COG1159 Era GTPase [General fu 99.8 2.4E-17 5.3E-22 116.2 11.9 137 1-157 12-159 (298)
196 cd01888 eIF2_gamma eIF2-gamma 99.8 9.1E-18 2E-22 115.5 9.5 95 43-157 83-186 (203)
197 TIGR00483 EF-1_alpha translati 99.7 5.5E-18 1.2E-22 128.3 9.0 141 1-157 13-194 (426)
198 PRK05433 GTP-binding protein L 99.7 2.1E-17 4.6E-22 129.1 12.5 137 1-157 13-171 (600)
199 PRK12317 elongation factor 1-a 99.7 1.7E-17 3.8E-22 125.6 11.4 141 1-157 12-192 (425)
200 cd04166 CysN_ATPS CysN_ATPS su 99.7 1.9E-17 4.1E-22 114.3 10.2 99 42-157 76-181 (208)
201 PRK09518 bifunctional cytidyla 99.7 4.1E-17 8.8E-22 130.2 13.1 132 1-157 281-423 (712)
202 KOG1707|consensus 99.7 6.9E-18 1.5E-22 127.4 7.1 145 1-157 15-162 (625)
203 cd01876 YihA_EngB The YihA (En 99.7 6.9E-17 1.5E-21 107.1 9.4 134 1-157 5-158 (170)
204 PRK10218 GTP-binding protein; 99.7 2.9E-16 6.2E-21 122.5 12.9 138 1-156 11-171 (607)
205 cd04167 Snu114p Snu114p subfam 99.7 1.1E-16 2.3E-21 111.0 9.4 108 1-126 6-136 (213)
206 COG0486 ThdF Predicted GTPase 99.7 2.8E-16 6E-21 116.7 12.0 131 1-157 223-363 (454)
207 PRK10512 selenocysteinyl-tRNA- 99.7 2.3E-16 5.1E-21 123.5 12.2 134 1-157 6-153 (614)
208 TIGR01394 TypA_BipA GTP-bindin 99.7 1.2E-16 2.6E-21 124.6 10.0 138 1-156 7-167 (594)
209 PRK04004 translation initiatio 99.7 2.7E-16 5.9E-21 122.5 10.9 105 1-126 12-136 (586)
210 cd01883 EF1_alpha Eukaryotic e 99.7 4.7E-16 1E-20 108.1 9.7 101 41-157 75-192 (219)
211 COG1160 Predicted GTPases [Gen 99.7 8.7E-16 1.9E-20 113.8 11.2 132 1-157 9-152 (444)
212 cd01850 CDC_Septin CDC/Septin. 99.7 1.2E-15 2.6E-20 109.3 11.5 134 1-153 10-185 (276)
213 cd04168 TetM_like Tet(M)-like 99.7 1.6E-15 3.4E-20 106.5 11.1 124 1-144 5-145 (237)
214 KOG1489|consensus 99.7 2.7E-15 5.9E-20 106.4 12.2 141 1-157 202-354 (366)
215 PF00009 GTP_EFTU: Elongation 99.7 2E-16 4.3E-21 107.6 6.0 138 1-157 9-174 (188)
216 COG1160 Predicted GTPases [Gen 99.6 5.2E-15 1.1E-19 109.8 13.3 137 1-157 184-338 (444)
217 cd01884 EF_Tu EF-Tu subfamily. 99.6 2.9E-15 6.2E-20 102.3 11.0 139 1-157 8-170 (195)
218 TIGR03680 eif2g_arch translati 99.6 6.3E-16 1.4E-20 116.4 8.4 100 42-157 79-183 (406)
219 PF09439 SRPRB: Signal recogni 99.6 2.6E-16 5.6E-21 105.2 5.0 114 1-128 9-127 (181)
220 cd04169 RF3 RF3 subfamily. Pe 99.6 8.3E-15 1.8E-19 104.5 12.6 109 1-127 8-137 (267)
221 COG0370 FeoB Fe2+ transport sy 99.6 1.5E-14 3.4E-19 111.7 12.2 134 1-157 9-151 (653)
222 cd01899 Ygr210 Ygr210 subfamil 99.6 1.1E-14 2.3E-19 106.0 10.8 78 1-78 4-111 (318)
223 smart00010 small_GTPase Small 99.6 3.1E-15 6.6E-20 94.8 6.9 107 1-157 6-113 (124)
224 PRK04000 translation initiatio 99.6 5.4E-15 1.2E-19 111.3 9.0 95 43-157 85-188 (411)
225 TIGR00485 EF-Tu translation el 99.6 8.3E-15 1.8E-19 110.0 9.8 138 1-156 18-179 (394)
226 PF10662 PduV-EutP: Ethanolami 99.6 7.2E-15 1.6E-19 94.4 7.6 122 1-157 7-133 (143)
227 cd01885 EF2 EF2 (for archaea a 99.6 1.9E-14 4.1E-19 100.0 10.2 116 1-135 6-148 (222)
228 COG0536 Obg Predicted GTPase [ 99.6 3.1E-14 6.6E-19 102.2 11.3 143 1-157 165-320 (369)
229 COG1084 Predicted GTPase [Gene 99.6 2.3E-14 5E-19 102.3 10.5 134 2-155 175-321 (346)
230 PRK12735 elongation factor Tu; 99.6 1.9E-14 4.2E-19 108.0 10.1 139 1-157 18-180 (396)
231 cd04165 GTPBP1_like GTPBP1-lik 99.6 2.5E-14 5.3E-19 99.7 10.0 69 42-128 83-153 (224)
232 cd04170 EF-G_bact Elongation f 99.6 3.2E-14 6.9E-19 101.8 10.2 136 1-156 5-159 (268)
233 KOG0077|consensus 99.6 1.1E-14 2.5E-19 94.2 6.2 111 1-128 26-136 (193)
234 PRK12736 elongation factor Tu; 99.5 5.4E-14 1.2E-18 105.6 10.4 138 1-156 18-179 (394)
235 TIGR00157 ribosome small subun 99.5 4.4E-14 9.6E-19 99.6 8.5 86 54-157 24-110 (245)
236 PLN00043 elongation factor 1-a 99.5 1.3E-13 2.7E-18 104.9 10.7 101 39-157 81-200 (447)
237 cd04104 p47_IIGP_like p47 (47- 99.5 7.9E-14 1.7E-18 95.5 8.3 106 1-126 7-120 (197)
238 CHL00071 tufA elongation facto 99.5 1.7E-13 3.7E-18 103.4 10.5 139 1-157 18-180 (409)
239 PRK05124 cysN sulfate adenylyl 99.5 1.9E-13 4E-18 104.7 10.7 100 41-157 105-212 (474)
240 cd01886 EF-G Elongation factor 99.5 1.3E-13 2.8E-18 98.5 9.2 132 1-154 5-159 (270)
241 PRK00741 prfC peptide chain re 99.5 1.4E-13 3E-18 106.4 9.9 125 1-145 16-161 (526)
242 TIGR02034 CysN sulfate adenyly 99.5 2.5E-13 5.3E-18 102.4 10.0 99 42-157 79-184 (406)
243 PF04670 Gtr1_RagA: Gtr1/RagA 99.5 3.2E-13 7E-18 94.0 9.7 137 1-154 5-161 (232)
244 PLN03126 Elongation factor Tu; 99.5 2.9E-13 6.2E-18 103.5 10.3 139 1-157 87-249 (478)
245 PRK05506 bifunctional sulfate 99.5 2.6E-13 5.6E-18 107.4 9.4 99 42-157 103-208 (632)
246 KOG1707|consensus 99.5 5.6E-13 1.2E-17 101.2 10.6 135 1-153 431-567 (625)
247 COG0218 Predicted GTPase [Gene 99.5 2.3E-13 4.9E-18 91.5 7.6 135 1-157 30-184 (200)
248 COG2262 HflX GTPases [General 99.5 1.6E-12 3.5E-17 95.5 12.5 137 1-157 198-343 (411)
249 PF01926 MMR_HSR1: 50S ribosom 99.5 1.4E-12 3.1E-17 81.9 10.6 101 1-122 5-116 (116)
250 TIGR00484 EF-G translation elo 99.5 1.5E-12 3.3E-17 104.0 13.2 133 1-155 16-171 (689)
251 KOG3905|consensus 99.4 1.1E-12 2.4E-17 93.8 9.8 154 1-157 58-277 (473)
252 COG1163 DRG Predicted GTPase [ 99.4 1.9E-12 4E-17 92.5 10.9 148 1-157 69-276 (365)
253 TIGR00503 prfC peptide chain r 99.4 1.1E-12 2.3E-17 101.5 10.3 109 1-127 17-146 (527)
254 PRK13351 elongation factor G; 99.4 7.6E-13 1.6E-17 105.7 9.8 107 1-128 14-140 (687)
255 KOG1191|consensus 99.4 4.7E-13 1E-17 100.0 8.0 146 1-157 274-437 (531)
256 KOG1423|consensus 99.4 1.2E-12 2.6E-17 92.8 9.4 107 1-126 78-198 (379)
257 KOG0090|consensus 99.4 3.6E-13 7.7E-18 90.8 6.2 109 1-126 44-158 (238)
258 PRK00049 elongation factor Tu; 99.4 2.6E-12 5.6E-17 96.6 10.7 139 1-157 18-180 (396)
259 PRK09602 translation-associate 99.4 2.3E-12 5.1E-17 96.5 10.1 77 1-77 7-113 (396)
260 COG0532 InfB Translation initi 99.4 8.5E-12 1.8E-16 94.3 12.1 133 1-157 11-157 (509)
261 PRK14845 translation initiatio 99.4 8.1E-12 1.7E-16 102.3 12.7 98 6-127 472-592 (1049)
262 PTZ00141 elongation factor 1- 99.3 1.2E-11 2.5E-16 94.2 10.1 102 39-157 81-200 (446)
263 KOG0462|consensus 99.3 2.7E-11 5.9E-16 91.8 11.2 101 39-157 121-222 (650)
264 PLN03127 Elongation factor Tu; 99.3 3.1E-11 6.6E-16 91.9 11.6 135 1-154 67-226 (447)
265 PF05783 DLIC: Dynein light in 99.3 2.4E-11 5.2E-16 92.5 10.7 154 1-157 31-251 (472)
266 PRK12740 elongation factor G; 99.3 2.4E-11 5.2E-16 97.0 10.7 123 1-145 1-142 (668)
267 KOG1145|consensus 99.3 3.2E-11 7E-16 91.4 10.4 134 1-157 159-303 (683)
268 TIGR00490 aEF-2 translation el 99.3 8.2E-12 1.8E-16 100.1 7.2 108 1-126 25-151 (720)
269 cd01852 AIG1 AIG1 (avrRpt2-ind 99.3 8.2E-10 1.8E-14 75.6 14.6 135 1-153 6-162 (196)
270 PTZ00258 GTP-binding protein; 99.2 9.2E-11 2E-15 87.4 10.1 77 1-77 27-126 (390)
271 KOG1490|consensus 99.2 2.5E-11 5.5E-16 91.1 7.1 140 1-157 174-328 (620)
272 KOG0705|consensus 99.2 2.4E-11 5.1E-16 92.1 6.5 138 1-157 36-176 (749)
273 PRK12739 elongation factor G; 99.2 9.7E-11 2.1E-15 93.7 9.9 108 1-128 14-140 (691)
274 TIGR00991 3a0901s02IAP34 GTP-b 99.2 4E-10 8.6E-15 81.3 10.9 117 1-132 44-172 (313)
275 PRK00007 elongation factor G; 99.2 2E-10 4.2E-15 92.0 10.4 133 1-155 16-171 (693)
276 PRK09601 GTP-binding protein Y 99.2 4.6E-10 1E-14 82.8 11.5 77 1-77 8-107 (364)
277 PRK09866 hypothetical protein; 99.2 7.9E-10 1.7E-14 86.1 12.6 98 44-157 231-340 (741)
278 PTZ00327 eukaryotic translatio 99.2 1.2E-10 2.6E-15 88.7 8.0 98 44-157 118-220 (460)
279 COG0481 LepA Membrane GTPase L 99.2 5.5E-10 1.2E-14 83.7 11.0 99 39-157 72-173 (603)
280 cd01900 YchF YchF subfamily. 99.2 7.4E-10 1.6E-14 79.2 11.0 77 1-77 4-103 (274)
281 cd01882 BMS1 Bms1. Bms1 is an 99.1 7.2E-10 1.6E-14 77.5 9.8 130 1-155 45-181 (225)
282 TIGR02836 spore_IV_A stage IV 99.1 2E-09 4.4E-14 80.1 12.3 135 1-154 23-219 (492)
283 PRK13768 GTPase; Provisional 99.1 1.5E-10 3.3E-15 82.2 6.3 71 44-128 98-177 (253)
284 PF03029 ATP_bind_1: Conserved 99.1 2.1E-11 4.5E-16 85.7 0.5 70 44-127 92-170 (238)
285 cd01853 Toc34_like Toc34-like 99.1 1.8E-09 3.9E-14 76.4 10.0 109 1-126 37-162 (249)
286 TIGR00073 hypB hydrogenase acc 99.1 9.9E-10 2.2E-14 75.8 8.4 44 114-157 149-194 (207)
287 cd00066 G-alpha G protein alph 99.1 7.4E-10 1.6E-14 81.1 7.9 73 41-126 159-241 (317)
288 TIGR00101 ureG urease accessor 99.0 2.4E-09 5.2E-14 73.4 9.1 90 43-157 92-183 (199)
289 COG5256 TEF1 Translation elong 99.0 1.6E-09 3.5E-14 80.0 8.6 105 38-157 80-198 (428)
290 COG4917 EutP Ethanolamine util 99.0 3.3E-10 7.2E-15 70.4 4.2 122 1-157 7-133 (148)
291 smart00275 G_alpha G protein a 99.0 2E-09 4.4E-14 79.5 8.5 72 42-126 183-264 (342)
292 COG3596 Predicted GTPase [Gene 99.0 3.5E-10 7.7E-15 79.5 4.2 108 1-126 45-161 (296)
293 COG0012 Predicted GTPase, prob 99.0 1.3E-08 2.9E-13 74.6 11.1 153 1-153 8-247 (372)
294 COG1217 TypA Predicted membran 98.9 9.2E-09 2E-13 77.1 9.8 134 5-156 15-171 (603)
295 PTZ00416 elongation factor 2; 98.9 3.1E-09 6.6E-14 86.7 7.5 108 1-126 25-157 (836)
296 KOG3886|consensus 98.9 1.8E-09 3.9E-14 74.1 5.1 137 1-154 10-163 (295)
297 COG2895 CysN GTPases - Sulfate 98.9 1.6E-08 3.5E-13 73.5 10.0 98 43-157 86-190 (431)
298 PRK12289 GTPase RsgA; Reviewed 98.9 7E-09 1.5E-13 76.7 8.3 83 56-157 79-162 (352)
299 cd01854 YjeQ_engC YjeQ/EngC. 98.9 6.3E-09 1.4E-13 75.2 7.4 79 60-157 72-151 (287)
300 PRK00098 GTPase RsgA; Reviewed 98.9 4.3E-08 9.3E-13 71.3 11.3 77 63-157 77-154 (298)
301 PLN00116 translation elongatio 98.9 5.8E-09 1.3E-13 85.2 6.9 68 41-126 96-163 (843)
302 PF00350 Dynamin_N: Dynamin fa 98.8 1.3E-08 2.8E-13 67.7 7.0 63 44-123 102-168 (168)
303 PF05049 IIGP: Interferon-indu 98.8 4.3E-09 9.4E-14 77.9 4.5 104 1-125 41-153 (376)
304 PRK07560 elongation factor EF- 98.8 1.7E-08 3.6E-13 81.5 7.4 108 1-126 26-152 (731)
305 PRK09435 membrane ATPase/prote 98.8 3.3E-08 7E-13 72.6 8.2 91 42-157 148-247 (332)
306 PRK12288 GTPase RsgA; Reviewed 98.8 3.8E-08 8.3E-13 72.8 8.2 76 65-157 119-195 (347)
307 TIGR00750 lao LAO/AO transport 98.8 2.3E-08 5E-13 72.8 6.7 91 42-157 126-225 (300)
308 cd01855 YqeH YqeH. YqeH is an 98.8 1.9E-08 4.1E-13 68.5 5.9 81 56-157 24-112 (190)
309 cd01859 MJ1464 MJ1464. This f 98.7 1.8E-08 3.9E-13 66.4 4.3 80 58-157 4-83 (156)
310 PF04548 AIG1: AIG1 family; I 98.7 1.2E-07 2.6E-12 65.7 8.5 136 1-153 6-163 (212)
311 PRK10463 hydrogenase nickel in 98.7 3.7E-08 8E-13 70.7 6.1 44 114-157 231-276 (290)
312 KOG0458|consensus 98.7 2.8E-07 6.1E-12 70.8 10.5 105 37-157 249-369 (603)
313 smart00053 DYNc Dynamin, GTPas 98.7 2.1E-07 4.5E-12 65.5 9.2 68 43-127 125-206 (240)
314 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 6.1E-08 1.3E-12 62.9 6.0 76 62-157 7-84 (141)
315 TIGR03597 GTPase_YqeH ribosome 98.7 4.4E-08 9.5E-13 73.0 5.4 84 53-157 50-140 (360)
316 COG4108 PrfC Peptide chain rel 98.7 2.4E-07 5.2E-12 69.2 9.1 127 2-148 19-166 (528)
317 TIGR00993 3a0901s04IAP86 chlor 98.6 8.3E-07 1.8E-11 69.9 11.2 112 1-127 124-250 (763)
318 KOG0468|consensus 98.6 1.2E-07 2.7E-12 74.0 6.1 107 1-125 134-261 (971)
319 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 1E-07 2.3E-12 61.8 4.8 49 1-53 89-138 (141)
320 COG0378 HypB Ni2+-binding GTPa 98.6 3.4E-07 7.4E-12 61.6 7.2 43 115-157 144-188 (202)
321 KOG1486|consensus 98.6 2.8E-06 6E-11 59.6 11.8 90 1-92 68-166 (364)
322 PF00735 Septin: Septin; Inte 98.6 4.9E-07 1.1E-11 65.2 8.3 53 1-53 10-73 (281)
323 KOG1532|consensus 98.5 9.9E-07 2.2E-11 62.5 8.6 16 1-16 25-40 (366)
324 KOG4273|consensus 98.5 9.4E-07 2E-11 61.9 8.2 139 1-155 10-195 (418)
325 KOG1144|consensus 98.5 5E-07 1.1E-11 71.4 6.9 104 1-125 481-604 (1064)
326 COG0480 FusA Translation elong 98.4 1.9E-06 4E-11 69.0 7.6 108 1-127 16-142 (697)
327 KOG0461|consensus 98.3 3.9E-06 8.5E-11 61.3 7.9 137 1-155 13-174 (522)
328 KOG1954|consensus 98.3 2.1E-06 4.7E-11 63.2 6.2 112 1-130 64-228 (532)
329 TIGR03348 VI_IcmF type VI secr 98.3 4E-06 8.6E-11 71.1 8.5 108 1-126 117-256 (1169)
330 COG5192 BMS1 GTP-binding prote 98.3 5.4E-06 1.2E-10 64.3 7.9 130 1-154 75-210 (1077)
331 KOG0082|consensus 98.2 3E-06 6.6E-11 62.3 5.9 73 41-126 193-275 (354)
332 KOG2486|consensus 98.2 1.5E-06 3.3E-11 61.5 4.1 136 1-157 142-303 (320)
333 cd01858 NGP_1 NGP-1. Autoanti 98.2 2.9E-06 6.3E-11 56.0 5.2 76 63-157 5-82 (157)
334 cd01849 YlqF_related_GTPase Yl 98.2 4E-06 8.7E-11 55.2 5.6 71 68-157 1-72 (155)
335 TIGR00092 GTP-binding protein 98.2 5.1E-06 1.1E-10 61.8 6.2 77 1-77 8-108 (368)
336 COG5019 CDC3 Septin family pro 98.2 2.7E-05 5.7E-10 57.3 9.7 53 1-53 29-92 (373)
337 TIGR03596 GTPase_YlqF ribosome 98.1 5.5E-06 1.2E-10 59.7 5.1 49 1-53 124-173 (276)
338 COG3276 SelB Selenocysteine-sp 98.1 2.7E-05 5.9E-10 58.5 8.6 135 2-157 7-149 (447)
339 PF03308 ArgK: ArgK protein; 98.1 1.1E-06 2.3E-11 62.0 1.2 88 42-157 121-217 (266)
340 cd01855 YqeH YqeH. YqeH is an 98.1 2.6E-06 5.6E-11 58.0 2.9 19 1-19 133-151 (190)
341 PF00503 G-alpha: G-protein al 98.1 9E-06 1.9E-10 61.4 6.0 71 42-125 235-315 (389)
342 PRK12288 GTPase RsgA; Reviewed 98.1 3.6E-06 7.8E-11 62.4 3.8 54 1-57 211-271 (347)
343 PRK09563 rbgA GTPase YlqF; Rev 98.1 8.3E-06 1.8E-10 59.1 5.6 50 1-54 127-177 (287)
344 PRK01889 GTPase RsgA; Reviewed 98.1 1.6E-05 3.5E-10 59.3 7.0 74 64-157 110-184 (356)
345 COG5258 GTPBP1 GTPase [General 98.1 7E-06 1.5E-10 60.8 4.9 67 43-127 201-269 (527)
346 cd01851 GBP Guanylate-binding 98.0 3.4E-05 7.3E-10 54.0 7.5 78 1-78 13-103 (224)
347 COG1161 Predicted GTPases [Gen 98.0 7.9E-06 1.7E-10 60.1 4.3 48 1-53 138-187 (322)
348 COG1703 ArgK Putative periplas 98.0 3E-05 6.5E-10 55.7 7.0 90 42-157 143-241 (323)
349 cd01856 YlqF YlqF. Proteins o 98.0 1.5E-05 3.2E-10 53.4 5.3 76 60-157 13-88 (171)
350 PF03193 DUF258: Protein of un 98.0 2.6E-06 5.7E-11 56.2 1.5 18 1-18 41-58 (161)
351 KOG2655|consensus 98.0 6.3E-05 1.4E-09 55.6 8.8 53 1-53 27-89 (366)
352 KOG0410|consensus 98.0 3.1E-06 6.7E-11 61.3 1.4 83 1-86 184-277 (410)
353 KOG3887|consensus 97.9 4.3E-05 9.4E-10 53.4 6.7 109 1-126 33-148 (347)
354 PRK10416 signal recognition pa 97.9 0.00013 2.7E-09 53.7 9.4 86 41-151 195-293 (318)
355 PRK13796 GTPase YqeH; Provisio 97.9 3.2E-05 7E-10 57.9 6.3 69 68-157 71-146 (365)
356 KOG1143|consensus 97.9 5.4E-05 1.2E-09 56.1 6.8 96 43-157 249-375 (591)
357 KOG1424|consensus 97.9 1.3E-05 2.8E-10 61.2 3.5 54 1-58 320-376 (562)
358 COG0050 TufB GTPases - transla 97.9 4.7E-05 1E-09 54.7 5.9 136 1-153 18-176 (394)
359 PF09547 Spore_IV_A: Stage IV 97.8 0.0012 2.6E-08 50.0 13.1 66 69-153 148-218 (492)
360 PRK12289 GTPase RsgA; Reviewed 97.8 2.7E-05 5.8E-10 58.0 4.5 19 1-19 178-196 (352)
361 TIGR00064 ftsY signal recognit 97.8 6.3E-05 1.4E-09 54.1 6.2 85 42-151 154-251 (272)
362 COG1162 Predicted GTPases [Gen 97.8 0.00018 3.9E-09 52.0 8.4 85 56-157 69-154 (301)
363 KOG1547|consensus 97.8 0.00012 2.6E-09 51.2 7.2 53 1-53 52-114 (336)
364 cd01854 YjeQ_engC YjeQ/EngC. 97.8 1.5E-05 3.2E-10 57.8 2.8 20 1-20 167-186 (287)
365 TIGR03596 GTPase_YlqF ribosome 97.8 6.3E-05 1.4E-09 54.3 5.9 76 60-157 15-90 (276)
366 TIGR00157 ribosome small subun 97.8 1.8E-05 4E-10 56.0 2.7 19 1-19 126-144 (245)
367 COG3523 IcmF Type VI protein s 97.7 7.7E-05 1.7E-09 62.8 6.0 110 1-127 131-270 (1188)
368 TIGR03597 GTPase_YqeH ribosome 97.7 3E-05 6.6E-10 58.0 3.3 18 1-18 160-177 (360)
369 COG1162 Predicted GTPases [Gen 97.7 5E-05 1.1E-09 54.8 4.2 54 1-57 170-230 (301)
370 PRK09563 rbgA GTPase YlqF; Rev 97.7 0.00011 2.3E-09 53.4 5.6 76 60-157 18-93 (287)
371 KOG1491|consensus 97.7 8.4E-05 1.8E-09 54.3 4.9 76 1-77 26-125 (391)
372 cd03112 CobW_like The function 97.7 0.00017 3.7E-09 47.7 5.9 18 1-18 6-23 (158)
373 cd02038 FleN-like FleN is a me 97.7 0.00088 1.9E-08 43.3 9.1 103 2-125 7-109 (139)
374 PRK00098 GTPase RsgA; Reviewed 97.6 4.6E-05 1E-09 55.6 3.1 19 1-19 170-188 (298)
375 COG5257 GCD11 Translation init 97.6 0.00015 3.2E-09 52.8 5.4 98 44-157 87-189 (415)
376 PRK14974 cell division protein 97.6 0.00019 4.2E-09 53.1 5.5 84 43-151 223-313 (336)
377 PRK13796 GTPase YqeH; Provisio 97.6 9.6E-05 2.1E-09 55.4 3.9 18 1-18 166-183 (365)
378 TIGR01425 SRP54_euk signal rec 97.5 0.00036 7.9E-09 53.1 6.7 38 42-79 182-225 (429)
379 KOG0467|consensus 97.5 0.00036 7.8E-09 55.9 6.0 98 5-124 19-135 (887)
380 PRK14721 flhF flagellar biosyn 97.4 0.00034 7.5E-09 53.2 5.7 17 1-17 197-213 (420)
381 KOG0448|consensus 97.4 0.0022 4.8E-08 51.0 10.1 94 44-155 207-311 (749)
382 cd03110 Fer4_NifH_child This p 97.3 0.0036 7.7E-08 42.0 9.1 86 41-149 91-176 (179)
383 PF00448 SRP54: SRP54-type pro 97.3 0.001 2.2E-08 45.6 6.4 84 43-151 84-174 (196)
384 PRK11537 putative GTP-binding 97.3 0.002 4.3E-08 47.5 8.3 17 2-18 11-27 (318)
385 PRK12727 flagellar biosynthesi 97.3 0.0033 7.2E-08 49.2 9.7 85 42-151 428-518 (559)
386 KOG0447|consensus 97.3 0.0021 4.5E-08 50.3 8.0 82 43-140 412-506 (980)
387 COG1419 FlhF Flagellar GTP-bin 97.2 0.0026 5.5E-08 48.0 8.2 17 1-17 209-225 (407)
388 PF06858 NOG1: Nucleolar GTP-b 97.2 0.0023 5E-08 34.6 5.7 43 67-124 14-58 (58)
389 COG0523 Putative GTPases (G3E 97.2 0.0047 1E-07 45.6 9.2 89 43-152 85-184 (323)
390 cd03114 ArgK-like The function 97.2 0.0021 4.5E-08 42.1 6.7 38 42-82 91-128 (148)
391 cd01983 Fer4_NifH The Fer4_Nif 97.2 0.0032 7E-08 37.3 7.1 75 2-90 6-81 (99)
392 PRK14722 flhF flagellar biosyn 97.2 0.0032 7E-08 47.3 8.2 17 1-17 143-159 (374)
393 COG1618 Predicted nucleotide k 97.2 0.00087 1.9E-08 44.2 4.5 48 2-51 12-59 (179)
394 cd03222 ABC_RNaseL_inhibitor T 97.1 0.0019 4.1E-08 43.6 6.2 83 1-93 31-118 (177)
395 KOG0460|consensus 97.1 0.0034 7.4E-08 46.3 7.7 136 1-153 60-218 (449)
396 KOG1487|consensus 97.1 0.0016 3.4E-08 46.3 5.5 83 1-85 65-155 (358)
397 KOG0099|consensus 97.0 0.0032 7E-08 44.8 6.5 79 33-126 194-282 (379)
398 cd02036 MinD Bacterial cell di 96.9 0.018 3.9E-07 38.3 9.6 83 44-147 64-146 (179)
399 TIGR00959 ffh signal recogniti 96.9 0.0031 6.7E-08 48.3 6.2 87 42-152 182-274 (428)
400 PF03266 NTPase_1: NTPase; In 96.9 0.0017 3.6E-08 43.5 3.9 16 2-17 6-21 (168)
401 KOG3929|consensus 96.8 0.00025 5.4E-09 50.2 -0.2 75 6-82 54-135 (363)
402 PRK00771 signal recognition pa 96.8 0.011 2.5E-07 45.4 8.6 85 43-151 176-266 (437)
403 PRK05703 flhF flagellar biosyn 96.8 0.018 4E-07 44.2 9.7 85 42-151 299-391 (424)
404 KOG1534|consensus 96.8 0.002 4.4E-08 44.4 3.9 16 1-16 9-24 (273)
405 KOG0465|consensus 96.8 0.0025 5.5E-08 50.1 4.9 70 41-128 102-171 (721)
406 COG1117 PstB ABC-type phosphat 96.8 0.0006 1.3E-08 47.1 1.3 17 1-17 39-55 (253)
407 COG1116 TauB ABC-type nitrate/ 96.8 0.00064 1.4E-08 47.8 1.4 17 1-17 35-51 (248)
408 cd00009 AAA The AAA+ (ATPases 96.8 0.0052 1.1E-07 39.0 5.6 19 1-19 25-43 (151)
409 PRK12726 flagellar biosynthesi 96.8 0.0098 2.1E-07 44.9 7.6 16 1-16 212-227 (407)
410 KOG0463|consensus 96.8 0.00059 1.3E-08 50.9 1.2 17 1-17 139-155 (641)
411 PF13207 AAA_17: AAA domain; P 96.7 0.00073 1.6E-08 42.3 1.1 18 1-18 5-22 (121)
412 cd03111 CpaE_like This protein 96.7 0.0094 2E-07 36.6 6.0 87 2-96 7-93 (106)
413 KOG0464|consensus 96.6 0.00058 1.3E-08 51.5 0.5 104 5-126 47-167 (753)
414 COG1136 SalX ABC-type antimicr 96.6 0.00092 2E-08 46.6 1.4 17 1-17 37-53 (226)
415 PRK06995 flhF flagellar biosyn 96.6 0.0085 1.9E-07 46.6 6.5 17 1-17 262-278 (484)
416 COG1126 GlnQ ABC-type polar am 96.6 0.0013 2.9E-08 45.4 1.9 17 1-17 34-50 (240)
417 PF13555 AAA_29: P-loop contai 96.6 0.0012 2.6E-08 36.4 1.4 16 1-16 29-44 (62)
418 KOG3859|consensus 96.6 0.0096 2.1E-07 42.9 6.1 52 1-52 48-104 (406)
419 PRK10867 signal recognition pa 96.6 0.039 8.4E-07 42.5 9.8 87 42-152 183-275 (433)
420 PF13671 AAA_33: AAA domain; P 96.5 0.00093 2E-08 43.0 0.8 17 1-17 5-21 (143)
421 COG3839 MalK ABC-type sugar tr 96.5 0.0013 2.8E-08 48.6 1.4 17 1-17 35-51 (338)
422 cd02042 ParA ParA and ParB of 96.4 0.032 6.9E-07 33.8 7.3 78 3-91 8-85 (104)
423 PF05621 TniB: Bacterial TniB 96.4 0.015 3.1E-07 42.4 6.3 20 1-20 67-86 (302)
424 PRK14723 flhF flagellar biosyn 96.4 0.024 5.1E-07 46.5 8.1 17 1-17 191-207 (767)
425 COG1120 FepC ABC-type cobalami 96.4 0.0017 3.7E-08 46.2 1.4 17 1-17 34-50 (258)
426 cd02019 NK Nucleoside/nucleoti 96.4 0.002 4.4E-08 36.3 1.5 18 1-18 5-22 (69)
427 COG0194 Gmk Guanylate kinase [ 96.4 0.0013 2.8E-08 44.4 0.7 19 1-19 10-28 (191)
428 KOG2484|consensus 96.3 0.0017 3.6E-08 48.6 1.2 49 1-53 258-307 (435)
429 PRK08118 topology modulation p 96.3 0.0018 3.9E-08 43.2 1.3 17 1-17 7-23 (167)
430 smart00382 AAA ATPases associa 96.3 0.002 4.3E-08 40.6 1.4 19 1-19 8-26 (148)
431 PF00005 ABC_tran: ABC transpo 96.3 0.0015 3.3E-08 41.8 0.9 18 1-18 17-34 (137)
432 COG3842 PotA ABC-type spermidi 96.3 0.0019 4.2E-08 48.0 1.4 17 1-17 37-53 (352)
433 KOG0780|consensus 96.3 0.004 8.7E-08 46.7 3.0 43 40-82 181-229 (483)
434 PRK10078 ribose 1,5-bisphospho 96.3 0.002 4.2E-08 43.7 1.4 18 1-18 8-25 (186)
435 PF00004 AAA: ATPase family as 96.3 0.0022 4.8E-08 40.5 1.5 18 1-18 4-21 (132)
436 PRK07261 topology modulation p 96.3 0.0021 4.5E-08 43.1 1.3 17 1-17 6-22 (171)
437 cd00820 PEPCK_HprK Phosphoenol 96.2 0.0021 4.6E-08 39.6 1.2 16 1-16 21-36 (107)
438 PRK11545 gntK gluconate kinase 96.2 0.0025 5.4E-08 42.4 1.6 18 1-18 1-18 (163)
439 COG0563 Adk Adenylate kinase a 96.2 0.0021 4.6E-08 43.4 1.3 18 1-18 6-23 (178)
440 PRK14738 gmk guanylate kinase; 96.2 0.0022 4.7E-08 44.3 1.4 18 1-18 19-36 (206)
441 KOG0066|consensus 96.2 0.024 5.2E-07 43.6 6.8 54 43-97 698-752 (807)
442 COG3845 ABC-type uncharacteriz 96.2 0.02 4.4E-07 44.2 6.4 17 1-17 36-52 (501)
443 TIGR02322 phosphon_PhnN phosph 96.2 0.0025 5.4E-08 42.8 1.3 18 1-18 7-24 (179)
444 cd00071 GMPK Guanosine monopho 96.1 0.0026 5.7E-08 41.0 1.3 18 1-18 5-22 (137)
445 PRK14737 gmk guanylate kinase; 96.1 0.003 6.6E-08 42.9 1.7 18 1-18 10-27 (186)
446 TIGR01360 aden_kin_iso1 adenyl 96.1 0.0028 6.1E-08 42.7 1.4 16 1-16 9-24 (188)
447 PRK10751 molybdopterin-guanine 96.1 0.0027 5.9E-08 42.6 1.2 18 1-18 12-29 (173)
448 TIGR03263 guanyl_kin guanylate 96.0 0.0034 7.3E-08 42.2 1.5 18 1-18 7-24 (180)
449 cd02023 UMPK Uridine monophosp 96.0 0.003 6.5E-08 43.2 1.2 17 1-17 5-21 (198)
450 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.0 0.0034 7.3E-08 43.5 1.4 18 1-18 36-53 (218)
451 cd03238 ABC_UvrA The excision 96.0 0.0033 7.2E-08 42.3 1.3 16 1-16 27-42 (176)
452 cd04178 Nucleostemin_like Nucl 96.0 0.03 6.5E-07 37.6 5.9 44 68-127 1-44 (172)
453 PF03205 MobB: Molybdopterin g 96.0 0.0026 5.6E-08 41.2 0.7 18 1-18 6-23 (140)
454 PF13238 AAA_18: AAA domain; P 96.0 0.0031 6.8E-08 39.6 1.1 17 2-18 5-21 (129)
455 COG4525 TauB ABC-type taurine 96.0 0.0036 7.9E-08 42.9 1.4 17 1-17 37-53 (259)
456 cd03225 ABC_cobalt_CbiO_domain 95.9 0.0038 8.2E-08 43.1 1.5 18 1-18 33-50 (211)
457 PF13191 AAA_16: AAA ATPase do 95.9 0.0035 7.5E-08 42.0 1.2 17 1-17 30-46 (185)
458 PRK06731 flhF flagellar biosyn 95.9 0.03 6.6E-07 40.3 6.0 84 42-150 154-244 (270)
459 PF13401 AAA_22: AAA domain; P 95.9 0.0033 7.1E-08 39.7 1.0 18 1-18 10-27 (131)
460 TIGR01166 cbiO cobalt transpor 95.9 0.0042 9E-08 42.2 1.5 18 1-18 24-41 (190)
461 cd03226 ABC_cobalt_CbiO_domain 95.9 0.004 8.7E-08 42.8 1.4 18 1-18 32-49 (205)
462 TIGR00960 3a0501s02 Type II (G 95.9 0.004 8.7E-08 43.1 1.4 18 1-18 35-52 (216)
463 cd03261 ABC_Org_Solvent_Resist 95.9 0.0042 9.1E-08 43.6 1.5 18 1-18 32-49 (235)
464 TIGR00235 udk uridine kinase. 95.9 0.0039 8.5E-08 43.0 1.3 17 1-17 12-28 (207)
465 cd03264 ABC_drug_resistance_li 95.9 0.0041 8.9E-08 42.9 1.4 18 1-18 31-48 (211)
466 COG1124 DppF ABC-type dipeptid 95.9 0.0042 9E-08 43.7 1.4 18 1-18 39-56 (252)
467 PRK08233 hypothetical protein; 95.9 0.0046 1E-07 41.4 1.6 17 1-17 9-25 (182)
468 KOG2485|consensus 95.9 0.01 2.3E-07 43.2 3.4 52 1-53 149-206 (335)
469 PF07728 AAA_5: AAA domain (dy 95.9 0.003 6.6E-08 40.5 0.6 17 1-17 5-21 (139)
470 PF13173 AAA_14: AAA domain 95.9 0.0043 9.4E-08 39.4 1.3 19 1-19 8-26 (128)
471 cd03269 ABC_putative_ATPase Th 95.8 0.0045 9.9E-08 42.7 1.5 18 1-18 32-49 (210)
472 TIGR02315 ABC_phnC phosphonate 95.8 0.0046 9.9E-08 43.6 1.5 18 1-18 34-51 (243)
473 cd02025 PanK Pantothenate kina 95.8 0.0047 1E-07 43.2 1.4 17 1-17 5-21 (220)
474 cd03224 ABC_TM1139_LivF_branch 95.8 0.0047 1E-07 42.9 1.4 18 1-18 32-49 (222)
475 cd03293 ABC_NrtD_SsuB_transpor 95.8 0.0047 1E-07 42.9 1.4 18 1-18 36-53 (220)
476 cd03265 ABC_DrrA DrrA is the A 95.8 0.0047 1E-07 42.9 1.4 18 1-18 32-49 (220)
477 cd03262 ABC_HisP_GlnQ_permease 95.8 0.0049 1.1E-07 42.5 1.5 18 1-18 32-49 (213)
478 PF00406 ADK: Adenylate kinase 95.8 0.0036 7.8E-08 40.9 0.7 17 1-17 2-18 (151)
479 PRK15177 Vi polysaccharide exp 95.8 0.005 1.1E-07 42.7 1.4 18 1-18 19-36 (213)
480 TIGR03608 L_ocin_972_ABC putat 95.7 0.0052 1.1E-07 42.2 1.5 18 1-18 30-47 (206)
481 PF00910 RNA_helicase: RNA hel 95.7 0.0059 1.3E-07 37.6 1.6 17 2-18 5-21 (107)
482 TIGR02673 FtsE cell division A 95.7 0.005 1.1E-07 42.6 1.4 18 1-18 34-51 (214)
483 TIGR00150 HI0065_YjeE ATPase, 95.7 0.023 4.9E-07 36.5 4.3 18 1-18 28-45 (133)
484 cd03259 ABC_Carb_Solutes_like 95.7 0.0053 1.1E-07 42.4 1.5 18 1-18 32-49 (213)
485 cd03292 ABC_FtsE_transporter F 95.7 0.0051 1.1E-07 42.5 1.4 18 1-18 33-50 (214)
486 TIGR01313 therm_gnt_kin carboh 95.7 0.0051 1.1E-07 40.6 1.3 18 1-18 4-21 (163)
487 cd03263 ABC_subfamily_A The AB 95.7 0.0053 1.2E-07 42.6 1.5 18 1-18 34-51 (220)
488 TIGR02211 LolD_lipo_ex lipopro 95.7 0.0053 1.2E-07 42.6 1.4 18 1-18 37-54 (221)
489 cd03229 ABC_Class3 This class 95.7 0.0053 1.1E-07 41.3 1.4 18 1-18 32-49 (178)
490 COG1121 ZnuC ABC-type Mn/Zn tr 95.7 0.0053 1.1E-07 43.6 1.4 17 1-17 36-52 (254)
491 TIGR01359 UMP_CMP_kin_fam UMP- 95.7 0.0052 1.1E-07 41.3 1.3 17 1-17 5-21 (183)
492 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.7 0.0054 1.2E-07 39.8 1.3 61 1-72 32-94 (144)
493 PRK14530 adenylate kinase; Pro 95.7 0.0051 1.1E-07 42.7 1.3 17 1-17 9-25 (215)
494 PRK00300 gmk guanylate kinase; 95.7 0.0051 1.1E-07 42.2 1.3 18 1-18 11-28 (205)
495 PRK03839 putative kinase; Prov 95.7 0.0052 1.1E-07 41.3 1.3 17 1-17 6-22 (180)
496 cd03218 ABC_YhbG The ABC trans 95.7 0.0056 1.2E-07 42.9 1.5 18 1-18 32-49 (232)
497 cd03258 ABC_MetN_methionine_tr 95.7 0.0055 1.2E-07 43.0 1.4 18 1-18 37-54 (233)
498 PRK04195 replication factor C 95.7 0.019 4E-07 44.9 4.4 18 1-18 45-62 (482)
499 COG3638 ABC-type phosphate/pho 95.7 0.0055 1.2E-07 43.0 1.3 17 1-17 36-52 (258)
500 PRK01889 GTPase RsgA; Reviewed 95.7 0.0059 1.3E-07 45.8 1.6 18 1-18 201-218 (356)
No 1
>KOG0084|consensus
Probab=100.00 E-value=1.7e-43 Score=232.71 Aligned_cols=143 Identities=34% Similarity=0.567 Sum_probs=137.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
||++|||||+|+.||.++.|.+.+..|+|..+ .+.+.++++.+.++||||+||++|+.+...|+++++++|+|||+++.
T Consensus 15 iGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~ 94 (205)
T KOG0084|consen 15 IGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQ 94 (205)
T ss_pred ECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccH
Confidence 69999999999999999999999999999777 88899999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc-EEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAG-FVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~ 157 (157)
+||+.+.+|+.++..+.... +|.++||||+|+.+.+.++.++++.|+.+++++ |+|+|||++.|
T Consensus 95 ~SF~~v~~Wi~Ei~~~~~~~--------------v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~N 159 (205)
T KOG0084|consen 95 ESFNNVKRWIQEIDRYASEN--------------VPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTN 159 (205)
T ss_pred HHhhhHHHHHHHhhhhccCC--------------CCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccC
Confidence 99999999999998888765 899999999999999999999999999999998 99999999875
No 2
>KOG0092|consensus
Probab=100.00 E-value=2.8e-42 Score=226.15 Aligned_cols=143 Identities=35% Similarity=0.531 Sum_probs=136.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|+.+||||||+.||..++|.+...+|+|.-| .+.+.+++..+++.||||+||++|.++.+.|+++++++|+|||+++.
T Consensus 11 LG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~ 90 (200)
T KOG0092|consen 11 LGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDE 90 (200)
T ss_pred ECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccH
Confidence 69999999999999999999998899999666 89999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+||..++.|+..+.+..+.. +-+.|+|||+||.+.|++..+++..+++..|++|+|+|||||.|
T Consensus 91 ~SF~~aK~WvkeL~~~~~~~--------------~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~N 154 (200)
T KOG0092|consen 91 ESFEKAKNWVKELQRQASPN--------------IVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGEN 154 (200)
T ss_pred HHHHHHHHHHHHHHhhCCCC--------------eEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccC
Confidence 99999999999999888744 77889999999999999999999999999999999999999987
No 3
>KOG0078|consensus
Probab=100.00 E-value=1.7e-41 Score=226.00 Aligned_cols=143 Identities=34% Similarity=0.521 Sum_probs=137.7
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
||+++||||+|+.+|.++.|...+..|+|..| .+++.++++.+.+++|||+||++|+.+...|+++++++++|||+++.
T Consensus 18 iGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne 97 (207)
T KOG0078|consen 18 IGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNE 97 (207)
T ss_pred ECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccch
Confidence 69999999999999999999999999999777 88999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.||+++..|+..+.++.... +|.++||||+|+...|+|+.+.++++|.++|++|+|+|||+|.|
T Consensus 98 ~Sfeni~~W~~~I~e~a~~~--------------v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~N 161 (207)
T KOG0078|consen 98 KSFENIRNWIKNIDEHASDD--------------VVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFN 161 (207)
T ss_pred HHHHHHHHHHHHHHhhCCCC--------------CcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCC
Confidence 99999999999998888764 99999999999999999999999999999999999999999987
No 4
>KOG0094|consensus
Probab=100.00 E-value=2.6e-41 Score=221.88 Aligned_cols=144 Identities=38% Similarity=0.534 Sum_probs=138.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
||+.+|||||||+||+.+.|...|.+|+|.+| .+++.+.+..+++++|||+||++|+.+.+.|++++.++|+|||+++.
T Consensus 28 lGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~ 107 (221)
T KOG0094|consen 28 LGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDR 107 (221)
T ss_pred EccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEecccc
Confidence 69999999999999999999999999999777 89999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.||++..+|++.++....... +-+++||||.||.+.+++..++++..++++++.|.|+||+.|.|
T Consensus 108 ~Sfe~t~kWi~dv~~e~gs~~-------------viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~N 172 (221)
T KOG0094|consen 108 NSFENTSKWIEDVRRERGSDD-------------VIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGEN 172 (221)
T ss_pred chHHHHHHHHHHHHhccCCCc-------------eEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCC
Confidence 999999999999998887654 88999999999999999999999999999999999999999987
No 5
>KOG0098|consensus
Probab=100.00 E-value=4.5e-41 Score=219.23 Aligned_cols=143 Identities=31% Similarity=0.485 Sum_probs=136.7
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|+.|||||+|+.||++..|.+.+..|+|.+| ...+.++++.++++||||+||+.|+.....|++++.++|||||++.+
T Consensus 12 iGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r 91 (216)
T KOG0098|consen 12 IGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRR 91 (216)
T ss_pred ECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccch
Confidence 69999999999999999999999999999777 88889999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++|..+..|+..+..+.... ..++|+|||+||...+.|+.++++.||+++|+.|+|+||++++|
T Consensus 92 ~sF~hL~~wL~D~rq~~~~N--------------mvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~ 155 (216)
T KOG0098|consen 92 ESFNHLTSWLEDARQHSNEN--------------MVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAEN 155 (216)
T ss_pred hhHHHHHHHHHHHHHhcCCC--------------cEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhh
Confidence 99999999999999887544 88999999999999999999999999999999999999999986
No 6
>KOG0394|consensus
Probab=100.00 E-value=1.7e-39 Score=211.40 Aligned_cols=147 Identities=29% Similarity=0.452 Sum_probs=135.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|...+|...|..|++..+ .+.+.++++.+.++||||+||++|+++...+++++|-++++||++++
T Consensus 15 LGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~ 94 (210)
T KOG0394|consen 15 LGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNP 94 (210)
T ss_pred eCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCCh
Confidence 69999999999999999999999999999666 89999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC--CceecHHHHHHHHHHhC-CcEEEeccccCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM--ERMISYDEGKRLAESWK-AGFVEASAKQDD 156 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~--~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~ 156 (157)
.||+.+..|..+++.+..... ....|++|+|||.|+.. .++++.+.++.||.+.| +||||+|||.+.
T Consensus 95 ~Sfe~L~~Wr~EFl~qa~~~~----------Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 95 KSFENLENWRKEFLIQASPQD----------PETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred hhhccHHHHHHHHHHhcCCCC----------CCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 999999999999998877432 12399999999999965 38999999999999998 799999999987
Q ss_pred C
Q psy1873 157 Y 157 (157)
Q Consensus 157 ~ 157 (157)
|
T Consensus 165 N 165 (210)
T KOG0394|consen 165 N 165 (210)
T ss_pred c
Confidence 6
No 7
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1.1e-38 Score=215.50 Aligned_cols=142 Identities=25% Similarity=0.424 Sum_probs=129.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
||+++||||||+++|+.+.|...+.||++..+...+.+++..+.+++||++|+++|..+++.+++++|++|+|||+++++
T Consensus 11 vGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~ 90 (182)
T cd04172 11 VGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE 90 (182)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHH
Confidence 69999999999999999999999999999888778889999999999999999999999999999999999999999999
Q ss_pred hHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-c
Q psy1873 81 SFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM------------ERMISYDEGKRLAESWKA-G 146 (157)
Q Consensus 81 s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~ 146 (157)
||+.+ ..|+..+..... . .|++|||||+|+.+ .+.++.++++.+++++++ +
T Consensus 91 Sf~~~~~~w~~~i~~~~~--~-------------~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~ 155 (182)
T cd04172 91 TLDSVLKKWKGEIQEFCP--N-------------TKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAAT 155 (182)
T ss_pred HHHHHHHHHHHHHHHHCC--C-------------CCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCE
Confidence 99998 789888876542 2 89999999999854 346999999999999996 9
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
|+||||++|+|
T Consensus 156 ~~E~SAk~~~n 166 (182)
T cd04172 156 YIECSALQSEN 166 (182)
T ss_pred EEECCcCCCCC
Confidence 99999999986
No 8
>KOG0079|consensus
Probab=100.00 E-value=1.8e-39 Score=204.58 Aligned_cols=142 Identities=33% Similarity=0.544 Sum_probs=135.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
||++|||||+|+.+|..+.|...|..|+|..+ ..++.++|..++++|||++|+++|+.+...|+++.+++|+|||+++.
T Consensus 14 igDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ 93 (198)
T KOG0079|consen 14 IGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNG 93 (198)
T ss_pred ecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcch
Confidence 69999999999999999999999999999766 78889999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+||.++.+|+.++...+.. +|-++||||.|..+.+.+..++++.|+...|+.+||+|||+++|
T Consensus 94 ESF~Nv~rWLeei~~ncds---------------v~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~N 156 (198)
T KOG0079|consen 94 ESFNNVKRWLEEIRNNCDS---------------VPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENEN 156 (198)
T ss_pred hhhHhHHHHHHHHHhcCcc---------------ccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhccc
Confidence 9999999999999888764 99999999999999999999999999999999999999999986
No 9
>KOG0080|consensus
Probab=100.00 E-value=2.4e-39 Score=206.57 Aligned_cols=144 Identities=33% Similarity=0.510 Sum_probs=135.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
||++|||||||+.+|..+.|.+....|+|..| .+.+.+++..+.+-||||+||++|+.+.+.|++++.++|+|||++.+
T Consensus 17 IGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~R 96 (209)
T KOG0080|consen 17 IGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSR 96 (209)
T ss_pred EccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccch
Confidence 69999999999999999999998888899777 89999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++|.++..|++++--+..... +..++||||.|...+|.++.+++.+|++.+++.|+|||||+.+|
T Consensus 97 dtf~kLd~W~~Eld~Ystn~d-------------iikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~ 161 (209)
T KOG0080|consen 97 DTFVKLDIWLKELDLYSTNPD-------------IIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTREN 161 (209)
T ss_pred hhHHhHHHHHHHHHhhcCCcc-------------HhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhcc
Confidence 999999999999987776554 88899999999888899999999999999999999999999875
No 10
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=2.4e-38 Score=216.85 Aligned_cols=143 Identities=31% Similarity=0.509 Sum_probs=129.6
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
||++|||||||+++|+.+.|...+.+|++..+ .+.+.++++.+.+++||++|+++|..++..+++++|++|+|||++++
T Consensus 6 lG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~ 85 (202)
T cd04120 6 IGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKK 85 (202)
T ss_pred ECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCH
Confidence 69999999999999999999988999998655 67788999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESW-KAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~ 157 (157)
+||+.+..|+..+..... .. +|++|||||+|+...+++...+++.+++.+ ++.|+||||++|+|
T Consensus 86 ~Sf~~l~~w~~~i~~~~~-~~-------------~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~g 150 (202)
T cd04120 86 ETFDDLPKWMKMIDKYAS-ED-------------AELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFN 150 (202)
T ss_pred HHHHHHHHHHHHHHHhCC-CC-------------CcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 999999999887654432 22 999999999999888899999999999886 78999999999986
No 11
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=4.1e-38 Score=211.71 Aligned_cols=142 Identities=30% Similarity=0.485 Sum_probs=128.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|+++||||||+.+|+.+.|...+.+|++..+...+.+++..+.+.|||++|+++|..+++.++++++++|+|||+++++
T Consensus 7 ~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~ 86 (176)
T cd04133 7 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRA 86 (176)
T ss_pred ECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHH
Confidence 69999999999999999999989999999878777888999999999999999999999999999999999999999999
Q ss_pred hHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc----------eecHHHHHHHHHHhCC-cEE
Q psy1873 81 SFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER----------MISYDEGKRLAESWKA-GFV 148 (157)
Q Consensus 81 s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~ 148 (157)
||+.+ ..|+..+..... . +|++|||||+|+.+.+ .+..+++..+++.+++ +|+
T Consensus 87 Sf~~~~~~w~~~i~~~~~--~-------------~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~ 151 (176)
T cd04133 87 SYENVLKKWVPELRHYAP--N-------------VPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYI 151 (176)
T ss_pred HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEE
Confidence 99998 689888865432 2 9999999999996543 4889999999999998 699
Q ss_pred EeccccCCC
Q psy1873 149 EASAKQDDY 157 (157)
Q Consensus 149 e~Sa~~~~~ 157 (157)
||||++|+|
T Consensus 152 E~SAk~~~n 160 (176)
T cd04133 152 ECSSKTQQN 160 (176)
T ss_pred ECCCCcccC
Confidence 999999986
No 12
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.5e-38 Score=212.08 Aligned_cols=142 Identities=23% Similarity=0.392 Sum_probs=129.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
||++|||||||+++|+++.|...+.||++..+...+.+++..+.+++||++|+++|..+++.++++++++|+|||+++++
T Consensus 7 vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~ 86 (178)
T cd04131 7 VGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPE 86 (178)
T ss_pred ECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChh
Confidence 69999999999999999999999999998888778889999999999999999999999999999999999999999999
Q ss_pred hHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-c
Q psy1873 81 SFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM------------ERMISYDEGKRLAESWKA-G 146 (157)
Q Consensus 81 s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~ 146 (157)
||+.+ ..|+..+..... . +|++|||||+||.+ .++++.+++..+++++++ +
T Consensus 87 Sf~~~~~~w~~~i~~~~~--~-------------~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~ 151 (178)
T cd04131 87 TLDSVLKKWRGEIQEFCP--N-------------TKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEI 151 (178)
T ss_pred hHHHHHHHHHHHHHHHCC--C-------------CCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCE
Confidence 99996 789888876543 2 99999999999854 246899999999999997 8
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
|+||||++|+|
T Consensus 152 ~~E~SA~~~~~ 162 (178)
T cd04131 152 YLECSAFTSEK 162 (178)
T ss_pred EEECccCcCCc
Confidence 99999999974
No 13
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=9.3e-38 Score=212.08 Aligned_cols=142 Identities=26% Similarity=0.399 Sum_probs=130.6
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
||++|||||||+.+|..+.+...+.++++..+ ...+.+++..+.+++||++|+++|..+++.+++++|++|+|||++++
T Consensus 12 iG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~ 91 (189)
T cd04121 12 VGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNR 91 (189)
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCH
Confidence 69999999999999999999888888888666 56678899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++|+++..|+.++..... . +|++|||||+|+...+.++.++++.+++.++++|+||||++|+|
T Consensus 92 ~Sf~~~~~w~~~i~~~~~--~-------------~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~ 154 (189)
T cd04121 92 WSFDGIDRWIKEIDEHAP--G-------------VPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFN 154 (189)
T ss_pred HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCC
Confidence 999999999999966542 2 99999999999988888999999999999999999999999986
No 14
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.8e-37 Score=214.31 Aligned_cols=141 Identities=23% Similarity=0.379 Sum_probs=128.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
||++|||||||+++|+.+.|...+.||++..+...+.+++..+.++||||+|+++|..+++.++++++++|+|||+++++
T Consensus 19 vGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~ 98 (232)
T cd04174 19 VGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPE 98 (232)
T ss_pred ECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChH
Confidence 69999999999999999999999999999888777889999999999999999999999999999999999999999999
Q ss_pred hHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-c
Q psy1873 81 SFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM------------ERMISYDEGKRLAESWKA-G 146 (157)
Q Consensus 81 s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~ 146 (157)
||+.+ ..|+..+..... . .|++|||||+|+.. .++++.++++.+|+++++ +
T Consensus 99 Sf~~~~~~w~~~i~~~~~--~-------------~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~ 163 (232)
T cd04174 99 TVDSALKKWKAEIMDYCP--S-------------TRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEV 163 (232)
T ss_pred HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCE
Confidence 99985 789888876542 2 89999999999864 367899999999999999 6
Q ss_pred EEEeccccCC
Q psy1873 147 FVEASAKQDD 156 (157)
Q Consensus 147 ~~e~Sa~~~~ 156 (157)
|+||||++|+
T Consensus 164 ~~EtSAktg~ 173 (232)
T cd04174 164 YLECSAFTSE 173 (232)
T ss_pred EEEccCCcCC
Confidence 9999999996
No 15
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=5.2e-37 Score=206.03 Aligned_cols=144 Identities=35% Similarity=0.601 Sum_probs=131.6
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+.+.+...+.+|++..+...+.+++..+.+.+||++|++++..+++.++++++++|+|||+++++
T Consensus 8 vG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~ 87 (172)
T cd04141 8 LGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRH 87 (172)
T ss_pred ECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchh
Confidence 69999999999999999999888899999878778889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
||+.+..|+..+........ +|+++||||+|+.+.++++.+++..+++.++++|+||||++|.|
T Consensus 88 Sf~~~~~~~~~i~~~~~~~~-------------~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~ 151 (172)
T cd04141 88 SFQEASEFKKLITRVRLTED-------------IPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHY 151 (172)
T ss_pred HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCC
Confidence 99999988877765433222 99999999999987788999999999999999999999999986
No 16
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=5.3e-37 Score=209.13 Aligned_cols=142 Identities=31% Similarity=0.466 Sum_probs=126.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
||+++||||||+.+|+.+.|...+.||++..+...+.+++..+.+++||++|+++|..+++.+++++|++|+|||+++++
T Consensus 9 vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~ 88 (191)
T cd01875 9 VGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPS 88 (191)
T ss_pred ECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHH
Confidence 69999999999999999999989999999877777788999999999999999999999999999999999999999999
Q ss_pred hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhC-Cc
Q psy1873 81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWK-AG 146 (157)
Q Consensus 81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~ 146 (157)
||+.+. .|+..+..... . +|++|||||+||.+. +.+..++++.+++.++ ++
T Consensus 89 Sf~~~~~~w~~~i~~~~~--~-------------~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~ 153 (191)
T cd01875 89 SYENVRHKWHPEVCHHCP--N-------------VPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVK 153 (191)
T ss_pred HHHHHHHHHHHHHHhhCC--C-------------CCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcE
Confidence 999996 57766654322 2 999999999999654 2467788999999999 59
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
|+||||++|+|
T Consensus 154 ~~e~SAk~g~~ 164 (191)
T cd01875 154 YLECSALNQDG 164 (191)
T ss_pred EEEeCCCCCCC
Confidence 99999999986
No 17
>KOG0093|consensus
Probab=100.00 E-value=1e-37 Score=196.43 Aligned_cols=143 Identities=34% Similarity=0.544 Sum_probs=133.1
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
||++.||||||+.|+++..|...+.+|.|..+ .+++--.++.+.+++|||+|+++|+.+...++++++++|||||+++.
T Consensus 27 iGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNe 106 (193)
T KOG0093|consen 27 IGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE 106 (193)
T ss_pred EccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCH
Confidence 69999999999999999999999999999777 55666677889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+||..++.|.-++....-.. +|++++|||||+.++|.++.+.++.+++++|..|||+|||.+.|
T Consensus 107 eSf~svqdw~tqIktysw~n--------------aqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~Nin 170 (193)
T KOG0093|consen 107 ESFNSVQDWITQIKTYSWDN--------------AQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENIN 170 (193)
T ss_pred HHHHHHHHHHHHheeeeccC--------------ceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhccccccc
Confidence 99999999999987775443 99999999999999999999999999999999999999999875
No 18
>KOG0081|consensus
Probab=100.00 E-value=2.7e-38 Score=201.56 Aligned_cols=144 Identities=32% Similarity=0.469 Sum_probs=133.7
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEEC---------CeEEEEEEEeCCCCccCcCchhhhccCCCEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMN---------NQDYDLKLVDTAGQDEYSIFPAQYSMDIHGY 70 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~---------~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 70 (157)
+|++||||||+++++.+++|.....+|++..+ .+.+.++ ++.+.+++|||+||++|+++...+++++-++
T Consensus 15 LGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGF 94 (219)
T KOG0081|consen 15 LGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGF 94 (219)
T ss_pred hccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccc
Confidence 69999999999999999999999999999777 6666653 4578899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEe
Q psy1873 71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEA 150 (157)
Q Consensus 71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 150 (157)
+++||+++..||-+++.|+.++.-+..... ..++++|||+||.+.++++.+++..+|+.+|+||||+
T Consensus 95 lLiFDlT~eqSFLnvrnWlSQL~~hAYcE~-------------PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfET 161 (219)
T KOG0081|consen 95 LLIFDLTSEQSFLNVRNWLSQLQTHAYCEN-------------PDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFET 161 (219)
T ss_pred eEEEeccchHHHHHHHHHHHHHHHhhccCC-------------CCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeee
Confidence 999999999999999999999988877665 7799999999999999999999999999999999999
Q ss_pred ccccCCC
Q psy1873 151 SAKQDDY 157 (157)
Q Consensus 151 Sa~~~~~ 157 (157)
||-+|.|
T Consensus 162 SA~tg~N 168 (219)
T KOG0081|consen 162 SACTGTN 168 (219)
T ss_pred ccccCcC
Confidence 9999986
No 19
>KOG0087|consensus
Probab=100.00 E-value=2.1e-37 Score=205.82 Aligned_cols=143 Identities=33% Similarity=0.469 Sum_probs=136.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
||+++||||-|+.||..+.|.....+|+|.++ ...+.++++.+..+||||+||++|+++...|++++.++++|||++.+
T Consensus 20 iGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~ 99 (222)
T KOG0087|consen 20 IGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRR 99 (222)
T ss_pred eCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhH
Confidence 69999999999999999999988889999666 88899999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+|+++.+|+.+++.+.... +++++||||+||...+.++.++++.++...++.++|+||+++.|
T Consensus 100 ~Tfenv~rWL~ELRdhad~n--------------ivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tN 163 (222)
T KOG0087|consen 100 QTFENVERWLKELRDHADSN--------------IVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATN 163 (222)
T ss_pred HHHHHHHHHHHHHHhcCCCC--------------eEEEEeecchhhhhccccchhhhHhHHHhcCceEEEeccccccc
Confidence 99999999999999998765 99999999999999999999999999999999999999999876
No 20
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1.5e-36 Score=204.24 Aligned_cols=142 Identities=29% Similarity=0.479 Sum_probs=126.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
||++|||||||+++|+.+.|...+.||++..+...+.+++..+.+.+||++|++++..++..+++++|++|+|||+++++
T Consensus 7 vG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~ 86 (175)
T cd01874 7 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPS 86 (175)
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHH
Confidence 69999999999999999999889999999878767788899999999999999999999999999999999999999999
Q ss_pred hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhC-Cc
Q psy1873 81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWK-AG 146 (157)
Q Consensus 81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~ 146 (157)
+|+.+. .|+..+..... . +|++|||||+|+.+. +.+..++++.+++..+ +.
T Consensus 87 s~~~~~~~w~~~i~~~~~--~-------------~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~ 151 (175)
T cd01874 87 SFENVKEKWVPEITHHCP--K-------------TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVK 151 (175)
T ss_pred HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcE
Confidence 999997 47766654332 2 999999999998543 5688889999999888 69
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
|+||||++|+|
T Consensus 152 ~~e~SA~tg~~ 162 (175)
T cd01874 152 YVECSALTQKG 162 (175)
T ss_pred EEEecCCCCCC
Confidence 99999999987
No 21
>KOG0086|consensus
Probab=100.00 E-value=1.8e-37 Score=196.76 Aligned_cols=143 Identities=31% Similarity=0.472 Sum_probs=136.6
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|+.|+|||+|+++|++++|.+....|++.+| ...+.+.++.++++||||+||++|+.....|++++.+.++|||++++
T Consensus 15 iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Tsr 94 (214)
T KOG0086|consen 15 IGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSR 94 (214)
T ss_pred eccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccch
Confidence 69999999999999999999999999999877 88889999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++|+.+..|+..+....+.. +-++++|||.||...++++..++..||.++.+.+.|+||+||+|
T Consensus 95 dsfnaLtnWL~DaR~lAs~n--------------IvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeN 158 (214)
T KOG0086|consen 95 DSFNALTNWLTDARTLASPN--------------IVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGEN 158 (214)
T ss_pred hhHHHHHHHHHHHHhhCCCc--------------EEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeeccccccc
Confidence 99999999999998887665 78899999999999999999999999999999999999999997
No 22
>KOG0083|consensus
Probab=100.00 E-value=3e-38 Score=196.19 Aligned_cols=143 Identities=32% Similarity=0.542 Sum_probs=135.2
Q ss_pred CCCCCCChhhhHhhhhccccc-ccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS 78 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~ 78 (157)
+|++++|||+|+-||.++.|. ....+|++..| .+.+.++++++.+++||++||++|++....|++++|+++++||+.+
T Consensus 3 lgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydian 82 (192)
T KOG0083|consen 3 LGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIAN 82 (192)
T ss_pred cccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeeccc
Confidence 699999999999999999984 66789999777 7888999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
..||++++.|+.+|.+..... +.+.++|||+|+..++.++.++++++++++++||.|+|||||-|
T Consensus 83 kasfdn~~~wlsei~ey~k~~--------------v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~n 147 (192)
T KOG0083|consen 83 KASFDNCQAWLSEIHEYAKEA--------------VALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFN 147 (192)
T ss_pred chhHHHHHHHHHHHHHHHHhh--------------HhHhhhccccccchhhccccchHHHHHHHHCCCceecccccccc
Confidence 999999999999999988765 88999999999999999999999999999999999999999975
No 23
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=7e-36 Score=198.45 Aligned_cols=144 Identities=44% Similarity=0.719 Sum_probs=131.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++++.+.+...+.+|++..+...+.+++..+.+++||++|++++..++..++++++++++|||+++++
T Consensus 7 ~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 86 (163)
T cd04136 7 LGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQS 86 (163)
T ss_pred ECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHH
Confidence 69999999999999999999888889988777788889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+|+.+..|+..+........ .|+++||||+|+.+.+.+..+++..+++.++++++++||++|+|
T Consensus 87 s~~~~~~~~~~i~~~~~~~~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 150 (163)
T cd04136 87 SFNDLQDLREQILRVKDTEN-------------VPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKIN 150 (163)
T ss_pred HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCC
Confidence 99999999999887654333 99999999999977778888888889998899999999999986
No 24
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=5.5e-36 Score=199.86 Aligned_cols=143 Identities=31% Similarity=0.482 Sum_probs=129.8
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+.+.+...+.+|++..+ ...+.+++..+.+.+||++|++++..++..++++++++|+|||++++
T Consensus 8 iG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~ 87 (166)
T cd04122 8 IGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR 87 (166)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCH
Confidence 69999999999999999999888888888666 56677888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++|+.+..|+..+....... .|+++||||+|+...+.+..+++..+++..+++++|+||++|+|
T Consensus 88 ~s~~~~~~~~~~~~~~~~~~--------------~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 151 (166)
T cd04122 88 STYNHLSSWLTDARNLTNPN--------------TVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGEN 151 (166)
T ss_pred HHHHHHHHHHHHHHHhCCCC--------------CeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence 99999999998886654322 89999999999988888888999999999999999999999987
No 25
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.2e-35 Score=197.77 Aligned_cols=144 Identities=40% Similarity=0.721 Sum_probs=131.7
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++++.+.+...+.+|++..+...+.+++..+.+.+||++|++++..+++.+++++|++++|||+++++
T Consensus 7 ~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~ 86 (164)
T cd04175 7 LGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQS 86 (164)
T ss_pred ECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHH
Confidence 69999999999999999999888889998877778888998999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+|+.+..|+..+........ .|+++||||+|+...+.+...++..+++.++++++++||++|.|
T Consensus 87 s~~~~~~~~~~i~~~~~~~~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 150 (164)
T cd04175 87 TFNDLQDLREQILRVKDTED-------------VPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKIN 150 (164)
T ss_pred HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCC
Confidence 99999999999987654333 99999999999987778888888899999999999999999986
No 26
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=9.4e-36 Score=206.34 Aligned_cols=142 Identities=21% Similarity=0.375 Sum_probs=124.8
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
||++|||||||+++|..+.|...|.||++..|...+.++++.+.+.+||++|++.|..+++.+++++|++|+|||+++++
T Consensus 7 vGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~ 86 (222)
T cd04173 7 VGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPE 86 (222)
T ss_pred ECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHH
Confidence 69999999999999999999999999999888778889999999999999999999999999999999999999999999
Q ss_pred hHHHHHH-HHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-c
Q psy1873 81 SFEVVQI-LYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWKA-G 146 (157)
Q Consensus 81 s~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~ 146 (157)
+|+.+.. |...+.... . .+|++|||||+|+... .+++.+++..++++.|+ +
T Consensus 87 Sf~~i~~~w~~~~~~~~-~--------------~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~ 151 (222)
T cd04173 87 TLDSVLKKWQGETQEFC-P--------------NAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVS 151 (222)
T ss_pred HHHHHHHHHHHHHHhhC-C--------------CCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCE
Confidence 9999955 544443322 2 2999999999999542 24788899999999996 9
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
|+||||++++|
T Consensus 152 y~E~SAk~~~~ 162 (222)
T cd04173 152 YVECSSRSSER 162 (222)
T ss_pred EEEcCCCcCCc
Confidence 99999999874
No 27
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=1.5e-35 Score=197.01 Aligned_cols=143 Identities=30% Similarity=0.488 Sum_probs=130.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
||++|||||||+++|+.+.+...+.+|++..+ ...+.+++..+.+++||++|++++..++..+++++|++++|||++++
T Consensus 6 vG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 85 (161)
T cd04117 6 IGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSE 85 (161)
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCH
Confidence 69999999999999999999888889998655 67788888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++|+.+..|+..+...... . .|+++||||+|+.+.+.+..+++..+++..+++|+||||++|.|
T Consensus 86 ~sf~~~~~~~~~~~~~~~~-~-------------~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~ 149 (161)
T cd04117 86 RSYQHIMKWVSDVDEYAPE-G-------------VQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSN 149 (161)
T ss_pred HHHHHHHHHHHHHHHhCCC-C-------------CeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 9999999999988765432 2 99999999999988888888999999999999999999999986
No 28
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=3e-35 Score=200.19 Aligned_cols=144 Identities=44% Similarity=0.702 Sum_probs=132.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
||++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..++++++++++|||+++++
T Consensus 11 iG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~ 90 (189)
T PTZ00369 11 VGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRS 90 (189)
T ss_pred ECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHH
Confidence 69999999999999999999888899998888888889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+|+.+..|+..+........ +|+++||||+|+.+.+++...++..+++.++++++++||++|+|
T Consensus 91 s~~~~~~~~~~i~~~~~~~~-------------~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~g 154 (189)
T PTZ00369 91 SFEEIASFREQILRVKDKDR-------------VPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVN 154 (189)
T ss_pred HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCC
Confidence 99999999998877654333 89999999999977778888889999999999999999999986
No 29
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=2.6e-35 Score=200.70 Aligned_cols=146 Identities=40% Similarity=0.637 Sum_probs=130.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
||++|||||||+++|+.+.+...+.+|++..+...+.+++..+.+++||++|+++|..++..+++++|++|+|||+++++
T Consensus 5 vG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~ 84 (190)
T cd04144 5 LGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRS 84 (190)
T ss_pred ECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHH
Confidence 69999999999999999999888889998777777788898899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+|+.+..|+..+....... ....|+++||||+|+...+.+...++..+++.++++|+++||++|+|
T Consensus 85 s~~~~~~~~~~i~~~~~~~-----------~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~ 150 (190)
T cd04144 85 TFERVERFREQIQRVKDES-----------AADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVN 150 (190)
T ss_pred HHHHHHHHHHHHHHHhccc-----------CCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCC
Confidence 9999999998887664321 12289999999999987788888889999999999999999999986
No 30
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=4.4e-35 Score=196.99 Aligned_cols=142 Identities=29% Similarity=0.463 Sum_probs=126.1
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+.+|+.+.+...+.+|++..+...+.++++.+.+.+||++|++++..+++.+++++|++|+|||+++++
T Consensus 7 iG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~ 86 (174)
T cd01871 7 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPA 86 (174)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHH
Confidence 69999999999999999999999999998777777788999999999999999999999999999999999999999999
Q ss_pred hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-c
Q psy1873 81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWKA-G 146 (157)
Q Consensus 81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~ 146 (157)
+|+.+. .|+..+..... . +|++|||||+|+.+. +.++.+++..+++.++. +
T Consensus 87 sf~~~~~~~~~~~~~~~~--~-------------~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 151 (174)
T cd01871 87 SFENVRAKWYPEVRHHCP--N-------------TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 151 (174)
T ss_pred HHHHHHHHHHHHHHHhCC--C-------------CCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcE
Confidence 999996 57666654332 2 999999999999542 35888999999999995 9
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
|+||||++|+|
T Consensus 152 ~~e~Sa~~~~~ 162 (174)
T cd01871 152 YLECSALTQKG 162 (174)
T ss_pred EEEecccccCC
Confidence 99999999987
No 31
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=7.2e-35 Score=193.77 Aligned_cols=144 Identities=38% Similarity=0.718 Sum_probs=130.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++++.+.+...+.+|++..+...+.+++..+.+++||++|+++|..++..+++++|++++|||+++++
T Consensus 7 ~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~ 86 (163)
T cd04176 7 LGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQ 86 (163)
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHH
Confidence 69999999999999999999888888888767778888998889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+|+++..|+..+........ +|+++||||+|+...+.+...++..+++..+++++++||++|.|
T Consensus 87 s~~~~~~~~~~~~~~~~~~~-------------~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 150 (163)
T cd04176 87 TFQDIKPMRDQIVRVKGYEK-------------VPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTM 150 (163)
T ss_pred HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCC
Confidence 99999999998887654333 99999999999977677777788899988899999999999976
No 32
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=6e-35 Score=194.70 Aligned_cols=143 Identities=34% Similarity=0.546 Sum_probs=128.1
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|.++++...+.+|++..+ ...+..++..+.+++||++|++++..++..++++++++++|||++++
T Consensus 7 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~ 86 (165)
T cd01865 7 IGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE 86 (165)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCH
Confidence 69999999999999999999888889988655 55667788889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++++.+..|+..+....... +|++|||||+|+.+.+.+..+++..+++.++++++++||++|.|
T Consensus 87 ~s~~~~~~~~~~i~~~~~~~--------------~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 150 (165)
T cd01865 87 ESFNAVQDWSTQIKTYSWDN--------------AQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENIN 150 (165)
T ss_pred HHHHHHHHHHHHHHHhCCCC--------------CCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence 99999999998886544322 89999999999987777888889999999999999999999986
No 33
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=2.7e-35 Score=195.57 Aligned_cols=143 Identities=28% Similarity=0.540 Sum_probs=133.5
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|+++||||||+++|.++.+...+.+|++ +.+...+.+++..+.+++||++|++++..++..+++++|++|+|||++++
T Consensus 5 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~ 84 (162)
T PF00071_consen 5 VGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDE 84 (162)
T ss_dssp EESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBH
T ss_pred ECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 69999999999999999999999999996 44588889999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+||+.+..|+..+....... +|++|+|||.|+.+.++++.++++.+++.++++|+|+||+++.|
T Consensus 85 ~S~~~~~~~~~~i~~~~~~~--------------~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~ 148 (162)
T PF00071_consen 85 ESFENLKKWLEEIQKYKPED--------------IPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGEN 148 (162)
T ss_dssp HHHHTHHHHHHHHHHHSTTT--------------SEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTT
T ss_pred cccccccccccccccccccc--------------ccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCC
Confidence 99999999999998887632 99999999999988889999999999999999999999999876
No 34
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=9.2e-35 Score=198.86 Aligned_cols=140 Identities=21% Similarity=0.339 Sum_probs=123.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
||++|||||||+++|+.+.+...+.+|++..+ ...+.+++..+.+.|||++|+++|..+++.++++++++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 79999999999999999999888899998555 67778888999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+|+.+..|+..+..... . +|++|||||+|+.. +.+..+. ..+++..++.|+||||++|+|
T Consensus 81 ~S~~~i~~w~~~i~~~~~--~-------------~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~ 141 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCE--N-------------IPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYN 141 (200)
T ss_pred HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCC
Confidence 999999999999987542 2 99999999999854 4555443 467888899999999999986
No 35
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.4e-34 Score=198.66 Aligned_cols=147 Identities=27% Similarity=0.360 Sum_probs=128.8
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEEC-CeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMN-NQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS 78 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~ 78 (157)
||++|||||||+++|+++.+...+.+|++..+ ...+.++ +..+.+.+||++|++++..+++.++++++++|+|||+++
T Consensus 6 vG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~ 85 (201)
T cd04107 6 IGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTR 85 (201)
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCC
Confidence 69999999999999999999888899998655 5667777 788999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CcEEEeccccCCC
Q psy1873 79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK-AGFVEASAKQDDY 157 (157)
Q Consensus 79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~ 157 (157)
+++|+.+..|+..+....... ....+|++|||||+|+.+.+.+..+++..+++..+ .+|+|+||++|+|
T Consensus 86 ~~s~~~~~~~~~~i~~~~~~~----------~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~ 155 (201)
T cd04107 86 PSTFEAVLKWKADLDSKVTLP----------NGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGIN 155 (201)
T ss_pred HHHHHHHHHHHHHHHHhhccc----------CCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCC
Confidence 999999999998886543211 01238999999999997667888899999999999 5999999999986
No 36
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=7e-35 Score=196.78 Aligned_cols=144 Identities=31% Similarity=0.453 Sum_probs=127.7
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEEC----------CeEEEEEEEeCCCCccCcCchhhhccCCCE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMN----------NQDYDLKLVDTAGQDEYSIFPAQYSMDIHG 69 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 69 (157)
+|++|||||||+++|..+.+...+.+|++..+ ...+.+. +..+.+++||++|++++..++..+++++|+
T Consensus 10 vG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 89 (180)
T cd04127 10 LGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMG 89 (180)
T ss_pred ECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCE
Confidence 69999999999999999999989999998655 4445443 456889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEE
Q psy1873 70 YVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVE 149 (157)
Q Consensus 70 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e 149 (157)
+++|||++++++|+.+..|+..+........ .|+++||||+|+.+.+.+..+++..+++.+++++++
T Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-------------~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 156 (180)
T cd04127 90 FLLIFDLTNEQSFLNVRNWMSQLQTHAYCEN-------------PDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFE 156 (180)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCC-------------CcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEE
Confidence 9999999999999999999998876543322 899999999999887888889999999999999999
Q ss_pred eccccCCC
Q psy1873 150 ASAKQDDY 157 (157)
Q Consensus 150 ~Sa~~~~~ 157 (157)
+||++|+|
T Consensus 157 ~Sak~~~~ 164 (180)
T cd04127 157 TSAATGTN 164 (180)
T ss_pred EeCCCCCC
Confidence 99999986
No 37
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.2e-34 Score=197.29 Aligned_cols=142 Identities=32% Similarity=0.445 Sum_probs=124.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
||++|||||||+++|.++.+...+.+|++..+...+.+++..+.+++||++|++.+..+++.++++++++|+|||+++++
T Consensus 6 vG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~ 85 (189)
T cd04134 6 LGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPD 85 (189)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHH
Confidence 69999999999999999999888899998878777788888899999999999999999999999999999999999999
Q ss_pred hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHhC-Cc
Q psy1873 81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER------------MISYDEGKRLAESWK-AG 146 (157)
Q Consensus 81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~ 146 (157)
+|+.+. .|+..+..... . .|++|||||+|+...+ .+..+++..+++..+ ++
T Consensus 86 sf~~~~~~~~~~i~~~~~--~-------------~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 150 (189)
T cd04134 86 SLENVESKWLGEIREHCP--G-------------VKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALR 150 (189)
T ss_pred HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCE
Confidence 999996 58777765432 2 9999999999996543 356778888988887 69
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
|+||||++|+|
T Consensus 151 ~~e~SAk~~~~ 161 (189)
T cd04134 151 YLECSAKLNRG 161 (189)
T ss_pred EEEccCCcCCC
Confidence 99999999986
No 38
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=9e-35 Score=196.68 Aligned_cols=142 Identities=23% Similarity=0.407 Sum_probs=123.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+.+.|...+.+|++..+ .+.+.+++..+.+++||++|+++|..+++.++++++++++|||++++
T Consensus 6 lG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~ 85 (182)
T cd04128 6 LGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRK 85 (182)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCH
Confidence 69999999999999999999988999998655 67788899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC-----CceecHHHHHHHHHHhCCcEEEecccc
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM-----ERMISYDEGKRLAESWKAGFVEASAKQ 154 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 154 (157)
++|+++..|+..+....... .| ++||||+|+.. ......++++.+++.+++++++|||++
T Consensus 86 ~s~~~i~~~~~~~~~~~~~~--------------~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~ 150 (182)
T cd04128 86 STLNSIKEWYRQARGFNKTA--------------IP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSH 150 (182)
T ss_pred HHHHHHHHHHHHHHHhCCCC--------------CE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCC
Confidence 99999999999887654321 66 57899999842 112224678889999999999999999
Q ss_pred CCC
Q psy1873 155 DDY 157 (157)
Q Consensus 155 ~~~ 157 (157)
|+|
T Consensus 151 g~~ 153 (182)
T cd04128 151 SIN 153 (182)
T ss_pred CCC
Confidence 986
No 39
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=2.4e-34 Score=191.83 Aligned_cols=146 Identities=36% Similarity=0.621 Sum_probs=129.8
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
||++|||||||+++++++.+...+.+|++..+...+..+...+.+++||++|++++..++..+++.++++|+|||+++++
T Consensus 7 vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 86 (165)
T cd04140 7 FGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQ 86 (165)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHH
Confidence 69999999999999999999888889988777777778888899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+++.+..|+..+....... ...+|+++||||+|+...+.+...++..++...+++|+||||++|+|
T Consensus 87 s~~~~~~~~~~i~~~~~~~-----------~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~ 152 (165)
T cd04140 87 SLEELKPIYELICEIKGNN-----------IEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHN 152 (165)
T ss_pred HHHHHHHHHHHHHHHhcCC-----------CCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCC
Confidence 9999999988776654321 12399999999999977778888888999998999999999999986
No 40
>KOG0088|consensus
Probab=100.00 E-value=2.2e-36 Score=192.72 Aligned_cols=143 Identities=34% Similarity=0.478 Sum_probs=135.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|..=||||||+-||++++|.....+|+-..| .+.+.+.++...++||||+||++|..+.+.|+++++++++|||++|+
T Consensus 19 LGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDr 98 (218)
T KOG0088|consen 19 LGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDR 98 (218)
T ss_pred EcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccch
Confidence 58888999999999999999999999988766 88899999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+||+.++.|..++....... +-++|||||+||.+++.++..+++.+++.-|+.|+|+||+.+.|
T Consensus 99 dSFqKVKnWV~Elr~mlGne--------------i~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~G 162 (218)
T KOG0088|consen 99 DSFQKVKNWVLELRTMLGNE--------------IELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVG 162 (218)
T ss_pred HHHHHHHHHHHHHHHHhCCe--------------eEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccC
Confidence 99999999999998777655 88999999999999999999999999999999999999999875
No 41
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=2e-34 Score=191.77 Aligned_cols=144 Identities=47% Similarity=0.766 Sum_probs=131.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|+...+...+.+++..+.+++||++|++++..++..++++++++++|||+++++
T Consensus 6 ~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 85 (164)
T smart00173 6 LGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQ 85 (164)
T ss_pred ECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHH
Confidence 69999999999999999999888888888777778888898999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+|+.+..|+..+........ .|+++||||+|+...+.+..+++..+++.++++++++||++|+|
T Consensus 86 s~~~~~~~~~~i~~~~~~~~-------------~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 149 (164)
T smart00173 86 SFEEIKKFREQILRVKDRDD-------------VPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVN 149 (164)
T ss_pred HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCC
Confidence 99999999988877654333 89999999999987778888889999999999999999999986
No 42
>KOG0091|consensus
Probab=100.00 E-value=7.5e-36 Score=191.11 Aligned_cols=144 Identities=35% Similarity=0.495 Sum_probs=129.7
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEE-ECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTR-MNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS 78 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~-~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~ 78 (157)
||++-||||||++.|.++++..-..||+|.++ ...+. -++..+++++|||+||++|+++.++|++++-+++++||+++
T Consensus 14 igdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditn 93 (213)
T KOG0091|consen 14 IGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITN 93 (213)
T ss_pred EcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccc
Confidence 69999999999999999999999999999554 33333 36778999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhc-cccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 79 HKSFEVVQILYDKLLDMTG-KIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 79 ~~s~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++||+.+..|+++..-... ... +-+++||+|+||...|+++.+++++++.++|+.|+|+||++|.|
T Consensus 94 r~sfehv~~w~~ea~m~~q~P~k-------------~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~N 160 (213)
T KOG0091|consen 94 RESFEHVENWVKEAAMATQGPDK-------------VVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCN 160 (213)
T ss_pred hhhHHHHHHHHHHHHHhcCCCCe-------------eEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCc
Confidence 9999999999998766655 332 66789999999999999999999999999999999999999987
No 43
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=2.8e-34 Score=190.29 Aligned_cols=143 Identities=40% Similarity=0.649 Sum_probs=129.5
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..++++++++++|||++++.
T Consensus 7 iG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~ 86 (162)
T cd04138 7 VGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRK 86 (162)
T ss_pred ECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHH
Confidence 69999999999999999999888889988878788888998889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+|+.+..|+..+........ .|++||+||+|+.. +.+...++..+++.++++++++||++|+|
T Consensus 87 s~~~~~~~~~~i~~~~~~~~-------------~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 149 (162)
T cd04138 87 SFEDIHTYREQIKRVKDSDD-------------VPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQG 149 (162)
T ss_pred HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCC
Confidence 99999999999887654333 99999999999865 56777888899999999999999999986
No 44
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=2e-34 Score=193.12 Aligned_cols=144 Identities=26% Similarity=0.396 Sum_probs=127.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
||++|||||||+++|+++.|...|.+|++..+ ...+.+++..+.+++||++|+++|..++..+++++|++++|||++++
T Consensus 6 vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~ 85 (170)
T cd04108 6 VGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDV 85 (170)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCH
Confidence 69999999999999999999999999998666 57778889889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce--ecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM--ISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++++.+..|+..++....... .|+++||||+|+.+.+. +..+++..+++.++++|+++||++|.|
T Consensus 86 ~s~~~~~~~~~~~~~~~~~~~-------------~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~ 152 (170)
T cd04108 86 ASLEHTRQWLEDALKENDPSS-------------VLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGEN 152 (170)
T ss_pred HHHHHHHHHHHHHHHhcCCCC-------------CeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 999999999999876654333 78999999999865433 346677888888899999999999986
No 45
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=2.5e-34 Score=193.08 Aligned_cols=142 Identities=30% Similarity=0.515 Sum_probs=126.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+++...+...+.+++..+.+++||++|++.+..+++.+++++|++|+|||+++++
T Consensus 4 ~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~ 83 (174)
T smart00174 4 VGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPA 83 (174)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHH
Confidence 69999999999999999999888888888777777888999999999999999999999999999999999999999999
Q ss_pred hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-c
Q psy1873 81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWKA-G 146 (157)
Q Consensus 81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~ 146 (157)
+|+.+. .|+..+..... . +|++|||||+|+... +.++.+++..+++.+++ +
T Consensus 84 s~~~~~~~~~~~i~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 148 (174)
T smart00174 84 SFENVKEKWYPEVKHFCP--N-------------TPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVK 148 (174)
T ss_pred HHHHHHHHHHHHHHhhCC--C-------------CCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcE
Confidence 999995 57777765432 2 999999999998642 34788889999999997 9
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
|+||||++|+|
T Consensus 149 ~~e~Sa~~~~~ 159 (174)
T smart00174 149 YLECSALTQEG 159 (174)
T ss_pred EEEecCCCCCC
Confidence 99999999986
No 46
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=2.7e-34 Score=191.94 Aligned_cols=143 Identities=34% Similarity=0.551 Sum_probs=129.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+++||++|++++..++..+++++|++++|||++++
T Consensus 9 vG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~ 88 (167)
T cd01867 9 IGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDE 88 (167)
T ss_pred ECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCH
Confidence 69999999999999999999999999998665 56777888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++|+.+..|+..+...... . +|+++||||+|+.+.+.+..+++..++..++++++|+||++|.|
T Consensus 89 ~s~~~~~~~~~~i~~~~~~-~-------------~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 152 (167)
T cd01867 89 KSFENIRNWMRNIEEHASE-D-------------VERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANIN 152 (167)
T ss_pred HHHHhHHHHHHHHHHhCCC-C-------------CcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 9999999999988765432 2 89999999999987778888889999999999999999999976
No 47
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=2.7e-34 Score=191.42 Aligned_cols=148 Identities=31% Similarity=0.495 Sum_probs=131.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.+|++..+ .+.+.+++..+.+++||++|++.+..+++.++++++++|+|||++++
T Consensus 6 vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~ 85 (168)
T cd04119 6 MGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDR 85 (168)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCH
Confidence 69999999999999999999889999998666 67788889999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++++.+..|+..+........ .....|+++|+||+|+.+.+.+..++...++...+++++++||++|+|
T Consensus 86 ~s~~~~~~~~~~~~~~~~~~~---------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 154 (168)
T cd04119 86 QSFEALDSWLKEMKQEGGPHG---------NMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEG 154 (168)
T ss_pred HHHHhHHHHHHHHHHhccccc---------cCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 999999999999987654310 012299999999999976677888889899999999999999999986
No 48
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=3.8e-34 Score=190.85 Aligned_cols=143 Identities=32% Similarity=0.560 Sum_probs=128.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||++++.++.+...+.+|.+..+ ...+.+++..+.+++||++|++++..++..++++++++|+|||++++
T Consensus 8 ~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 87 (166)
T cd01869 8 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ 87 (166)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCH
Confidence 69999999999999999999888888888555 56778888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++|+.+..|+..+....... .|++++|||+|+...+.+..+++..+++.++++++++||++|+|
T Consensus 88 ~s~~~l~~~~~~~~~~~~~~--------------~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 151 (166)
T cd01869 88 ESFNNVKQWLQEIDRYASEN--------------VNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATN 151 (166)
T ss_pred HHHHhHHHHHHHHHHhCCCC--------------CcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcC
Confidence 99999999999887654222 89999999999987778888999999999999999999999986
No 49
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=7.4e-34 Score=188.87 Aligned_cols=144 Identities=40% Similarity=0.651 Sum_probs=130.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++++++.+...+.+|++..+.....+++..+.+.+||++|++++..++..+++++|++++|||++++.
T Consensus 8 ~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 87 (164)
T cd04145 8 VGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRG 87 (164)
T ss_pred ECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence 69999999999999999988888888888777777788998899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+|+.+..|+..+........ .|++|++||+|+...+.+...++..+++.++++++++||++|.|
T Consensus 88 s~~~~~~~~~~~~~~~~~~~-------------~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 151 (164)
T cd04145 88 SFEEVDKFHTQILRVKDRDE-------------FPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLN 151 (164)
T ss_pred HHHHHHHHHHHHHHHhCCCC-------------CCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCC
Confidence 99999999998887654333 89999999999987777888889999999999999999999986
No 50
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=6.1e-34 Score=197.37 Aligned_cols=146 Identities=30% Similarity=0.401 Sum_probs=129.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccce-EEEEEEECC-eEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENT-FVKTTRMNN-QDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS 78 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~ 78 (157)
||++|||||||+++|+++.+...+.+|++.. +...+.+++ ..+.+++||++|++.+..++..+++++|++|+|||+++
T Consensus 6 vG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~ 85 (215)
T cd04109 6 LGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTN 85 (215)
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCC
Confidence 6999999999999999999998999999844 466677754 57899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+++|+.+..|+..+........ ..+|+++||||+|+...+++..+++..+++.++++++++||++|+|
T Consensus 86 ~~s~~~~~~w~~~l~~~~~~~~-----------~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~g 153 (215)
T cd04109 86 SQSFENLEDWYSMVRKVLKSSE-----------TQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDR 153 (215)
T ss_pred HHHHHHHHHHHHHHHHhccccC-----------CCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence 9999999999999887654211 1278999999999987788888999999999999999999999986
No 51
>KOG0097|consensus
Probab=100.00 E-value=5.2e-35 Score=183.61 Aligned_cols=143 Identities=31% Similarity=0.476 Sum_probs=134.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
||+-|||||+|+.+|.+.+|+.....|++..+ ...+.+.++++.++|||++||++|+.....|++++.+.++|||++.+
T Consensus 17 igdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrr 96 (215)
T KOG0097|consen 17 IGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR 96 (215)
T ss_pred EccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhh
Confidence 68999999999999999999999999999777 77888999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+.++.+..|+.......... ..++++|||.||...+.++.++++.|+.++|+.|.|+|||+|+|
T Consensus 97 stynhlsswl~dar~ltnpn--------------t~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~n 160 (215)
T KOG0097|consen 97 STYNHLSSWLTDARNLTNPN--------------TVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQN 160 (215)
T ss_pred hhhhhHHHHHhhhhccCCCc--------------eEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCc
Confidence 99999999998877665443 77899999999999999999999999999999999999999986
No 52
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=8.4e-34 Score=193.63 Aligned_cols=140 Identities=23% Similarity=0.316 Sum_probs=115.6
Q ss_pred CCCCCCChhhhHh-hhhcc-----cccccccCCcc--ceEEEE--------EEECCeEEEEEEEeCCCCccCcCchhhhc
Q psy1873 1 MGYRSVGKSSLSI-QFVDG-----QFVDSYDPTIE--NTFVKT--------TRMNNQDYDLKLVDTAGQDEYSIFPAQYS 64 (157)
Q Consensus 1 vG~~~~GKssli~-~~~~~-----~~~~~~~~t~~--~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 64 (157)
||++|||||||+. ++.++ .+...+.||++ +.+... ..++++.+.+++|||+|++. .+.+.++
T Consensus 8 vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~~~~~~~ 85 (195)
T cd01873 8 VGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--KDRRFAY 85 (195)
T ss_pred ECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--hhhcccC
Confidence 6999999999995 66544 34567788986 334322 26789999999999999976 3567789
Q ss_pred cCCCEEEEEEECCChhhHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC----------------
Q psy1873 65 MDIHGYVLVYSITSHKSFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM---------------- 127 (157)
Q Consensus 65 ~~~~~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~---------------- 127 (157)
+++|++|+|||++++.||+.+. .|+..+..... . +|+++||||+|+.+
T Consensus 86 ~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~--~-------------~piilvgNK~DL~~~~~~~~~~~~~~~~~~ 150 (195)
T cd01873 86 GRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP--R-------------VPVILVGCKLDLRYADLDEVNRARRPLARP 150 (195)
T ss_pred CCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC--C-------------CCEEEEEEchhccccccchhhhcccccccc
Confidence 9999999999999999999997 58777755432 2 89999999999863
Q ss_pred ---CceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 128 ---ERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 128 ---~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+.++.++++.+++.++++|+||||++|+|
T Consensus 151 ~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~ 183 (195)
T cd01873 151 IKNADILPPETGRAVAKELGIPYYETSVVTQFG 183 (195)
T ss_pred cccCCccCHHHHHHHHHHhCCEEEEcCCCCCCC
Confidence 478899999999999999999999999987
No 53
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=9.6e-34 Score=188.70 Aligned_cols=143 Identities=32% Similarity=0.474 Sum_probs=129.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+++||++|++++..+++.++++++++|+|||++++
T Consensus 9 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 88 (165)
T cd01868 9 IGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKK 88 (165)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCH
Confidence 69999999999999999998878888888555 67778888888999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+....... +|++|||||+|+...+.+..++...+++..+++++|+||++|+|
T Consensus 89 ~s~~~~~~~~~~~~~~~~~~--------------~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 152 (165)
T cd01868 89 QTFENVERWLKELRDHADSN--------------IVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTN 152 (165)
T ss_pred HHHHHHHHHHHHHHHhCCCC--------------CeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence 99999999999887765432 89999999999987778888899999998899999999999986
No 54
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1e-33 Score=195.58 Aligned_cols=144 Identities=31% Similarity=0.501 Sum_probs=128.6
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEE-CCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRM-NNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS 78 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~ 78 (157)
+|++|||||||+++|+++.+...+.+|++..+ ...+.+ ++..+.+++||++|++++..++..+++++|++++|||+++
T Consensus 8 vG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~ 87 (211)
T cd04111 8 IGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITN 87 (211)
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCC
Confidence 69999999999999999999888888888544 566666 4677899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+++|+.+..|+..+........ +|++|||||+|+...+.+..+++..+++.++++|+|+||++|+|
T Consensus 88 ~~Sf~~l~~~~~~i~~~~~~~~-------------~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~ 153 (211)
T cd04111 88 RESFEHVHDWLEEARSHIQPHR-------------PVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDN 153 (211)
T ss_pred HHHHHHHHHHHHHHHHhcCCCC-------------CeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCC
Confidence 9999999999999887654433 88999999999988788888999999999999999999999986
No 55
>KOG0395|consensus
Probab=100.00 E-value=6.5e-34 Score=193.52 Aligned_cols=144 Identities=46% Similarity=0.758 Sum_probs=136.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|.+|||||+|+.+|+...|...|.||+++.|.+.+.+++..+.+.|+|++|++.+..+...++.+++++++||+++++.
T Consensus 9 lG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~ 88 (196)
T KOG0395|consen 9 LGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRS 88 (196)
T ss_pred ECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
||+.+..++.+++....... +|+++||||+|+...+.++.++++.++..++++|+|+||+.+.|
T Consensus 89 SF~~~~~l~~~I~r~~~~~~-------------~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~ 152 (196)
T KOG0395|consen 89 SFEEAKQLREQILRVKGRDD-------------VPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYN 152 (196)
T ss_pred HHHHHHHHHHHHHHhhCcCC-------------CCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcC
Confidence 99999999999966665554 89999999999988899999999999999999999999998753
No 56
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.6e-33 Score=193.10 Aligned_cols=142 Identities=32% Similarity=0.492 Sum_probs=128.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
||++|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..++++++++++|||++++
T Consensus 12 vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~ 91 (199)
T cd04110 12 IGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNG 91 (199)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCH
Confidence 69999999999999999999888889988555 56777888888999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++|+.+..|+..+...... .|++|||||+|+.+.+.+..+++..+++.++++++++||++|.|
T Consensus 92 ~s~~~~~~~~~~i~~~~~~---------------~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~g 154 (199)
T cd04110 92 ESFVNVKRWLQEIEQNCDD---------------VCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENIN 154 (199)
T ss_pred HHHHHHHHHHHHHHHhCCC---------------CCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcC
Confidence 9999999999987665422 89999999999987777888899999999999999999999986
No 57
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=1.9e-33 Score=188.88 Aligned_cols=142 Identities=29% Similarity=0.460 Sum_probs=126.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+.+.+...+.+|..+.+...+.+++..+.+++||++|++++..+++.+++++|++|+|||+++++
T Consensus 6 ~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~ 85 (173)
T cd04130 6 VGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPS 85 (173)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHH
Confidence 69999999999999999999988999987777777888998899999999999999999999999999999999999999
Q ss_pred hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-c
Q psy1873 81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM------------ERMISYDEGKRLAESWKA-G 146 (157)
Q Consensus 81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~ 146 (157)
+|+.+. .|+..+..... . .|++++|||+|+.. .+.+..+++..+++.+++ +
T Consensus 86 sf~~~~~~~~~~~~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~ 150 (173)
T cd04130 86 SFQNISEKWIPEIRKHNP--K-------------APIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACE 150 (173)
T ss_pred HHHHHHHHHHHHHHhhCC--C-------------CCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCe
Confidence 999985 67777764322 2 89999999999853 457788899999999998 9
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
|+|+||++|.|
T Consensus 151 ~~e~Sa~~~~~ 161 (173)
T cd04130 151 YIECSALTQKN 161 (173)
T ss_pred EEEEeCCCCCC
Confidence 99999999987
No 58
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=1.5e-33 Score=195.15 Aligned_cols=139 Identities=24% Similarity=0.397 Sum_probs=119.5
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
||++|||||||+++|+.+.|.. +.+|++..+... .. ..+.+.+||++|++.|..++..++++++++|+|||+++++
T Consensus 6 vG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~-~~--~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~ 81 (220)
T cd04126 6 LGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLK-QW--GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQ 81 (220)
T ss_pred ECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEE-Ee--eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHH
Confidence 6999999999999999999875 567887544221 11 4578999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC-------------------CceecHHHHHHHHH
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM-------------------ERMISYDEGKRLAE 141 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~-------------------~~~~~~~~~~~~~~ 141 (157)
+|+.+..|+..+...... .+|++|||||+|+.+ .+++..+++..+++
T Consensus 82 Sf~~l~~~~~~l~~~~~~--------------~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~ 147 (220)
T cd04126 82 SLEELEDRFLGLTDTANE--------------DCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYK 147 (220)
T ss_pred HHHHHHHHHHHHHHhcCC--------------CCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHH
Confidence 999999999888764322 289999999999965 57899999999999
Q ss_pred HhC--------------CcEEEeccccCCC
Q psy1873 142 SWK--------------AGFVEASAKQDDY 157 (157)
Q Consensus 142 ~~~--------------~~~~e~Sa~~~~~ 157 (157)
+.+ ++|+||||++|+|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~ 177 (220)
T cd04126 148 RINKYKMLDEDLSPAAEKMCFETSAKTGYN 177 (220)
T ss_pred HhCccccccccccccccceEEEeeCCCCCC
Confidence 887 6899999999986
No 59
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.9e-33 Score=191.20 Aligned_cols=143 Identities=33% Similarity=0.498 Sum_probs=129.1
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+++||++|++.+..++..+++++|++|+|||++++
T Consensus 6 ~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~ 85 (188)
T cd04125 6 IGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQ 85 (188)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCH
Confidence 69999999999999999999887888988655 56778888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++|+.+..|+..+....... .|+++||||+|+.+.+.+...++..+++..+++++|+||++|.|
T Consensus 86 ~s~~~i~~~~~~i~~~~~~~--------------~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~ 149 (188)
T cd04125 86 ESFENLKFWINEINRYAREN--------------VIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSIN 149 (188)
T ss_pred HHHHHHHHHHHHHHHhCCCC--------------CeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 99999999999887654332 89999999999987788888899999999999999999999976
No 60
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=2.2e-33 Score=186.00 Aligned_cols=138 Identities=24% Similarity=0.426 Sum_probs=118.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
||++|||||||+.+|+.+.|...+.++ +..+...+.++++.+.+.+||++|++. ..+++++|++++|||+++++
T Consensus 6 vG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~ 79 (158)
T cd04103 6 VGNLQSGKSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLENEA 79 (158)
T ss_pred ECCCCCcHHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCCHH
Confidence 699999999999999999887766555 445567788999999999999999975 35678899999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC--CCceecHHHHHHHHHHh-CCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH--MERMISYDEGKRLAESW-KAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~ 157 (157)
||+++..|+..+........ +|+++||||.|+. ..+++..++++.++++. +++|+||||++|+|
T Consensus 80 sf~~~~~~~~~i~~~~~~~~-------------~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~ 146 (158)
T cd04103 80 SFQTVYNLYHQLSSYRNISE-------------IPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLN 146 (158)
T ss_pred HHHHHHHHHHHHHHhcCCCC-------------CCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 99999999999876653232 8999999999985 35788889999999887 48999999999987
No 61
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=1.4e-33 Score=195.83 Aligned_cols=140 Identities=23% Similarity=0.348 Sum_probs=122.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
||++|||||||+++++.+.+...+.+|++..+ ...+..++..+.+.+||++|+++|..++..++++++++|+|||++++
T Consensus 19 vG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~ 98 (219)
T PLN03071 19 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR 98 (219)
T ss_pred ECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCH
Confidence 69999999999999999999988999998555 56677778889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++|+.+..|+..+..... . +|++|||||+|+.. +.+..++. .+++..+++|+||||++|.|
T Consensus 99 ~s~~~i~~w~~~i~~~~~--~-------------~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~ 159 (219)
T PLN03071 99 LTYKNVPTWHRDLCRVCE--N-------------IPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 159 (219)
T ss_pred HHHHHHHHHHHHHHHhCC--C-------------CcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCC
Confidence 999999999999876542 2 99999999999854 44455555 77788889999999999986
No 62
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=1.6e-33 Score=187.00 Aligned_cols=142 Identities=34% Similarity=0.505 Sum_probs=127.1
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEEC--CeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMN--NQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSIT 77 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~ 77 (157)
+|++|||||||+++|+++.+...+.+|++..+ ...+.++ +..+.+++||++|++++..++..++++++++++|||++
T Consensus 6 vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~ 85 (162)
T cd04106 6 VGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTT 85 (162)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECC
Confidence 69999999999999999999888889988665 5666666 77889999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 78 SHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 78 ~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++++++.+..|+..+..... . +|+++|+||.|+...+.+..+++..+++.++++++++||++|.|
T Consensus 86 ~~~s~~~l~~~~~~~~~~~~--~-------------~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 150 (162)
T cd04106 86 DRESFEAIESWKEKVEAECG--D-------------IPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFN 150 (162)
T ss_pred CHHHHHHHHHHHHHHHHhCC--C-------------CCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 99999999999888765432 2 99999999999987778888889999999999999999999976
No 63
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=2.7e-33 Score=187.40 Aligned_cols=146 Identities=25% Similarity=0.376 Sum_probs=127.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+++||++|++++..++..+++.+|++++|||++++
T Consensus 11 vG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 90 (170)
T cd04116 11 LGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDS 90 (170)
T ss_pred ECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCH
Confidence 69999999999999999999888888888555 66778899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~ 157 (157)
++++.+..|...++....... ...+|+++||||+|+. .+.+..+++.++++.++. +++|+||++|+|
T Consensus 91 ~s~~~~~~~~~~~~~~~~~~~----------~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 158 (170)
T cd04116 91 QSFQNLSNWKKEFIYYADVKE----------PESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATN 158 (170)
T ss_pred HHHHhHHHHHHHHHHhccccc----------CCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCC
Confidence 999999999998876543210 1238999999999986 567788899999999985 899999999986
No 64
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=3e-33 Score=187.40 Aligned_cols=142 Identities=30% Similarity=0.485 Sum_probs=127.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCc-CchhhhccCCCEEEEEEECCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYS-IFPAQYSMDIHGYVLVYSITS 78 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~ilv~d~~~ 78 (157)
+|++|||||||+++|+.+.+...+.++++..+ ...+.+++..+.+.+||++|++++. .++..+++++|++++|||+++
T Consensus 8 vG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~ 87 (170)
T cd04115 8 IGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTN 87 (170)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCC
Confidence 69999999999999999998888888888555 6677888989999999999999887 578899999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccC
Q psy1873 79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155 (157)
Q Consensus 79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 155 (157)
+++|+.+..|+..+........ +|+++|+||+|+...++++.+++..+++..+++|+|+||+++
T Consensus 88 ~~s~~~~~~~~~~~~~~~~~~~-------------~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 151 (170)
T cd04115 88 MASFHSLPSWIEECEQHSLPNE-------------VPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDP 151 (170)
T ss_pred HHHHHhHHHHHHHHHHhcCCCC-------------CCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCC
Confidence 9999999999988887654333 999999999999888888889999999999999999999994
No 65
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=3.4e-33 Score=185.38 Aligned_cols=143 Identities=31% Similarity=0.469 Sum_probs=128.7
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++++++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..+++.++++++++++|||++++
T Consensus 6 ~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 85 (161)
T cd04113 6 IGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNR 85 (161)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCH
Confidence 69999999999999999999888888887555 56677888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++++.+..|+..+....... +|++|++||+|+...+.+..+++..+++.++++++++||++|+|
T Consensus 86 ~s~~~~~~~~~~~~~~~~~~--------------~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 149 (161)
T cd04113 86 TSFEALPTWLSDARALASPN--------------IVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGEN 149 (161)
T ss_pred HHHHHHHHHHHHHHHhCCCC--------------CeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence 99999999998886554332 89999999999987778888999999999999999999999986
No 66
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.3e-33 Score=190.47 Aligned_cols=143 Identities=31% Similarity=0.547 Sum_probs=127.7
Q ss_pred CCCCCCChhhhHhhhhccccc-ccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS 78 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~ 78 (157)
||++|||||||+++|+.+.+. ..+.+|++..+ ...+.+++..+.+.+||++|++++..++..+++++|++|+|||+++
T Consensus 6 vG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~ 85 (191)
T cd04112 6 LGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITN 85 (191)
T ss_pred ECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCC
Confidence 699999999999999999885 46778887655 5567888999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+++++++..|+..+....... +|+++||||+|+...+.+..+++..+++.++++|+|+||++|+|
T Consensus 86 ~~s~~~~~~~~~~i~~~~~~~--------------~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~ 150 (191)
T cd04112 86 KASFDNIRAWLTEIKEYAQED--------------VVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLN 150 (191)
T ss_pred HHHHHHHHHHHHHHHHhCCCC--------------CcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 999999999999888765432 99999999999977778888889999999999999999999986
No 67
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.9e-33 Score=190.02 Aligned_cols=142 Identities=27% Similarity=0.452 Sum_probs=123.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEEC-CeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMN-NQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.+|++..+...+... +..+.+++||++|++++..+++.+++++|++|+|||++++
T Consensus 6 vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~ 85 (187)
T cd04132 6 VGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNP 85 (187)
T ss_pred ECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCH
Confidence 699999999999999999998888899887776566665 7788999999999999999999999999999999999999
Q ss_pred hhHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC----ceecHHHHHHHHHHhCC-cEEEeccc
Q psy1873 80 KSFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME----RMISYDEGKRLAESWKA-GFVEASAK 153 (157)
Q Consensus 80 ~s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~----~~~~~~~~~~~~~~~~~-~~~e~Sa~ 153 (157)
++|+.+. .|+..+..... . +|+++||||+|+... +.+...++..++..+++ +++++||+
T Consensus 86 ~s~~~~~~~~~~~~~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 150 (187)
T cd04132 86 TSLDNVEDKWFPEVNHFCP--G-------------TPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAK 150 (187)
T ss_pred HHHHHHHHHHHHHHHHhCC--C-------------CCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCC
Confidence 9999996 57666654322 2 899999999998653 35778889999999998 99999999
Q ss_pred cCCC
Q psy1873 154 QDDY 157 (157)
Q Consensus 154 ~~~~ 157 (157)
+|+|
T Consensus 151 ~~~~ 154 (187)
T cd04132 151 TMEN 154 (187)
T ss_pred CCCC
Confidence 9986
No 68
>KOG0095|consensus
Probab=100.00 E-value=2.3e-34 Score=182.03 Aligned_cols=143 Identities=31% Similarity=0.490 Sum_probs=134.7
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
||+.|||||+|++||.++-|+.....|++..+ .+++.+++.++.++|||++||++|+++.++|++.++++|++||++-.
T Consensus 13 vgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscq 92 (213)
T KOG0095|consen 13 VGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQ 92 (213)
T ss_pred EccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccC
Confidence 69999999999999999999988889999777 89999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+|+-+.+|+.++.+..... +--++||||.|+.+.++++..-++.|++....-|.|+||++-+|
T Consensus 93 psfdclpewlreie~yan~k--------------vlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~n 156 (213)
T KOG0095|consen 93 PSFDCLPEWLREIEQYANNK--------------VLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADN 156 (213)
T ss_pred cchhhhHHHHHHHHHHhhcc--------------eEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhh
Confidence 99999999999998888654 77789999999999999999999999999889999999998775
No 69
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=3.1e-33 Score=193.84 Aligned_cols=143 Identities=31% Similarity=0.466 Sum_probs=130.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
||++|||||||+++|.++.+...+.+|++..+ ...+.+++..+.+++||++|++++..++..++++++++|+|||++++
T Consensus 18 vG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~ 97 (216)
T PLN03110 18 IGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKR 97 (216)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCCh
Confidence 69999999999999999998878889988665 67788899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+|+.+..|+..+....... +|+++||||+|+...+.+..+++..++..++++++|+||++|+|
T Consensus 98 ~s~~~~~~~~~~~~~~~~~~--------------~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~ 161 (216)
T PLN03110 98 QTFDNVQRWLRELRDHADSN--------------IVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATN 161 (216)
T ss_pred HHHHHHHHHHHHHHHhCCCC--------------CeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 99999999999887664322 99999999999988888888999999999999999999999986
No 70
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=6.2e-33 Score=185.50 Aligned_cols=143 Identities=32% Similarity=0.500 Sum_probs=128.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
||++|||||||+++++++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..+...+++.+|++++|||++++
T Consensus 10 vG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~ 89 (168)
T cd01866 10 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR 89 (168)
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCH
Confidence 69999999999999999988887778877555 56677888888999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++++.+..|+..+....... +|++|||||.|+.+.+.+..+++..++...+++++|+||++|+|
T Consensus 90 ~s~~~~~~~~~~~~~~~~~~--------------~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 153 (168)
T cd01866 90 ETFNHLTSWLEDARQHSNSN--------------MTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASN 153 (168)
T ss_pred HHHHHHHHHHHHHHHhCCCC--------------CcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 99999999999887764322 99999999999987778888899999999999999999999986
No 71
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.9e-33 Score=185.40 Aligned_cols=143 Identities=30% Similarity=0.475 Sum_probs=127.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..+++++|++++|||++++
T Consensus 9 vG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~ 88 (165)
T cd01864 9 IGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRR 88 (165)
T ss_pred ECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCH
Confidence 69999999999999999998888888887544 56778888888999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+....... +|+++|+||+|+...+.+..+++..+++.+++ .++|+||++|+|
T Consensus 89 ~s~~~~~~~~~~i~~~~~~~--------------~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 153 (165)
T cd01864 89 SSFESVPHWIEEVEKYGASN--------------VVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQN 153 (165)
T ss_pred HHHHhHHHHHHHHHHhCCCC--------------CcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCC
Confidence 99999999999987654322 99999999999987778888889999999886 789999999986
No 72
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=8.8e-33 Score=184.75 Aligned_cols=144 Identities=38% Similarity=0.695 Sum_probs=130.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|.++.+...+.+|++..+...+.+++..+.+++||++|+++|..++..+++.++++++|||+++++
T Consensus 7 iG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~ 86 (168)
T cd04177 7 LGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEA 86 (168)
T ss_pred ECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHH
Confidence 69999999999999999999888889988777788888999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK-AGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~ 157 (157)
+++.+..|...+........ .|+++++||.|+...+.+..++...+++..+ ++++++||++|.|
T Consensus 87 s~~~~~~~~~~i~~~~~~~~-------------~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~ 151 (168)
T cd04177 87 SLNELGELREQVLRIKDSDN-------------VPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTN 151 (168)
T ss_pred HHHHHHHHHHHHHHhhCCCC-------------CCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCC
Confidence 99999999888876543333 9999999999998777888888888888888 7999999999986
No 73
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=5.1e-33 Score=185.31 Aligned_cols=143 Identities=34% Similarity=0.573 Sum_probs=125.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccC-cCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
||++|||||||+++++.+.+...+.++....+...+.++++.+.+++||++|+..+ ......+++++|++|+|||++++
T Consensus 5 vG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~ 84 (165)
T cd04146 5 LGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDR 84 (165)
T ss_pred ECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCH
Confidence 69999999999999999988888888887667777788999999999999999863 45677889999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhc-cccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCC
Q psy1873 80 KSFEVVQILYDKLLDMTG-KIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 156 (157)
++|+.+..|+..+..... ... +|+++||||+|+...+.+..+++..+++..+++|+|+||++|.
T Consensus 85 ~s~~~~~~~~~~~~~~~~~~~~-------------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~ 149 (165)
T cd04146 85 SSFDEISQLKQLIREIKKRDRE-------------IPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDY 149 (165)
T ss_pred HHHHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCc
Confidence 999999999888776543 222 9999999999997777888889999999999999999999984
No 74
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=7.6e-33 Score=194.94 Aligned_cols=152 Identities=28% Similarity=0.492 Sum_probs=128.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
||++|||||||+++|+.+.+...+.+|+++.+.+.+.+++..+.+.|||++|++.|..++..++.++|++|+|||+++++
T Consensus 6 lG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~ 85 (247)
T cd04143 6 LGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRE 85 (247)
T ss_pred ECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHH
Confidence 69999999999999999999888899998777778889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-hCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES-WKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~ 157 (157)
+|+.+..|+.++........ ........+|++|||||+|+...+.+..+++..++.. .++.++++||++|+|
T Consensus 86 Sf~~i~~~~~~I~~~k~~~~-----~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~g 158 (247)
T cd04143 86 SFEEVCRLREQILETKSCLK-----NKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSN 158 (247)
T ss_pred HHHHHHHHHHHHHHhhcccc-----cccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCC
Confidence 99999999999976532100 0000123499999999999977677888888887754 367899999999986
No 75
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1.9e-32 Score=182.86 Aligned_cols=140 Identities=23% Similarity=0.368 Sum_probs=121.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++++.+.+...+.+|++..+ ...+..++..+.+.+||++|++.+..++..++..+|++|+|||++++
T Consensus 6 vG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 85 (166)
T cd00877 6 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSR 85 (166)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCH
Confidence 69999999999999999988888889988554 55566678889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++++.+..|+..+..... . +|+++||||+|+.. +.+. .+...+++..+++++|+||++|+|
T Consensus 86 ~s~~~~~~~~~~i~~~~~--~-------------~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~ 146 (166)
T cd00877 86 VTYKNVPNWHRDLVRVCG--N-------------IPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYN 146 (166)
T ss_pred HHHHHHHHHHHHHHHhCC--C-------------CcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCC
Confidence 999999999999877654 2 99999999999863 3443 345667777788999999999986
No 76
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=2.1e-32 Score=187.24 Aligned_cols=144 Identities=30% Similarity=0.494 Sum_probs=120.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccce-EEEEEEECCeEEEEEEEeCCCCccCcCc--------hhhhccCCCEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENT-FVKTTRMNNQDYDLKLVDTAGQDEYSIF--------PAQYSMDIHGYV 71 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~~~~~i 71 (157)
+|++|||||||+++|+++.+...+.||++.. +...+.++++.+.+++||++|...+... ....++++|++|
T Consensus 6 vG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~ii 85 (198)
T cd04142 6 LGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFI 85 (198)
T ss_pred ECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEE
Confidence 6999999999999999999988888888744 4566778898899999999997665422 234578999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHHhc--cccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-HhCCcEE
Q psy1873 72 LVYSITSHKSFEVVQILYDKLLDMTG--KIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE-SWKAGFV 148 (157)
Q Consensus 72 lv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~ 148 (157)
+|||+++++||+.+..|+..+..... ... +|++|||||+|+...+.+..+++..++. .++++|+
T Consensus 86 lv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~-------------~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 152 (198)
T cd04142 86 LVYDICSPDSFHYVKLLRQQILETRPAGNKE-------------PPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYL 152 (198)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcccCCCC-------------CCEEEEEECccccccccccHHHHHHHHHHhcCCcEE
Confidence 99999999999999999999887652 222 9999999999997777777777777754 5689999
Q ss_pred EeccccCCC
Q psy1873 149 EASAKQDDY 157 (157)
Q Consensus 149 e~Sa~~~~~ 157 (157)
||||++|.|
T Consensus 153 e~Sak~g~~ 161 (198)
T cd04142 153 ECSAKYNWH 161 (198)
T ss_pred EecCCCCCC
Confidence 999999986
No 77
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=2.1e-32 Score=188.98 Aligned_cols=143 Identities=33% Similarity=0.488 Sum_probs=129.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
||++|||||||+++|+...+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..+++++|++++|||++++
T Consensus 12 vG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~ 91 (210)
T PLN03108 12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR 91 (210)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcH
Confidence 69999999999999999988888888888665 66778888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++|+.+..|+..+....... .|+++++||+|+...+.+..+++..+++.++++|+|+||+++.|
T Consensus 92 ~s~~~l~~~~~~~~~~~~~~--------------~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 155 (210)
T PLN03108 92 ETFNHLASWLEDARQHANAN--------------MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQN 155 (210)
T ss_pred HHHHHHHHHHHHHHHhcCCC--------------CcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 99999999998876554322 89999999999988788899999999999999999999999986
No 78
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=5.4e-32 Score=181.69 Aligned_cols=142 Identities=27% Similarity=0.468 Sum_probs=123.6
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+.+.+...+.+|+...+...+.+++..+.+.+||++|++.+..++..++++++++++|||+++++
T Consensus 6 ~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~ 85 (174)
T cd04135 6 VGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPA 85 (174)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHH
Confidence 69999999999999999999888888888777667788898899999999999999999999999999999999999999
Q ss_pred hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-c
Q psy1873 81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWKA-G 146 (157)
Q Consensus 81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~ 146 (157)
+|+.+. .|+..+... .. . .|++++|||+|+.+. +.+..+++..+++..+. +
T Consensus 86 s~~~~~~~~~~~l~~~-~~-~-------------~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 150 (174)
T cd04135 86 SFQNVKEEWVPELKEY-AP-N-------------VPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHC 150 (174)
T ss_pred HHHHHHHHHHHHHHhh-CC-C-------------CCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCE
Confidence 999996 465555433 22 2 999999999998543 36778889999999996 8
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
|+||||++|+|
T Consensus 151 ~~e~Sa~~~~g 161 (174)
T cd04135 151 YVECSALTQKG 161 (174)
T ss_pred EEEecCCcCCC
Confidence 99999999987
No 79
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=5.3e-32 Score=184.71 Aligned_cols=142 Identities=28% Similarity=0.456 Sum_probs=124.6
Q ss_pred CCCCCCChhhhHhhhhcccccc-cccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVD-SYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS 78 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~ 78 (157)
+|++|||||||+++|+.+.+.. .+.+|++..+ ...+.+++..+.+.+||++|++++..++..+++++|++++|||+++
T Consensus 6 vG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~ 85 (193)
T cd04118 6 LGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTD 85 (193)
T ss_pred ECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCC
Confidence 6999999999999999999874 6888988766 5678889999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC----ceecHHHHHHHHHHhCCcEEEecccc
Q psy1873 79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME----RMISYDEGKRLAESWKAGFVEASAKQ 154 (157)
Q Consensus 79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~e~Sa~~ 154 (157)
+++|+.+..|+..+..... . .|+++|+||+|+.+. +.+...++..++...+++++++||++
T Consensus 86 ~~s~~~~~~~~~~i~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 150 (193)
T cd04118 86 SSSFERAKFWVKELQNLEE--H-------------CKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKT 150 (193)
T ss_pred HHHHHHHHHHHHHHHhcCC--C-------------CCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 9999999999988765432 2 899999999998532 45666778888988899999999999
Q ss_pred CCC
Q psy1873 155 DDY 157 (157)
Q Consensus 155 ~~~ 157 (157)
|+|
T Consensus 151 ~~g 153 (193)
T cd04118 151 GQN 153 (193)
T ss_pred CCC
Confidence 986
No 80
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=4.3e-32 Score=179.94 Aligned_cols=143 Identities=38% Similarity=0.543 Sum_probs=127.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|++..+...+.++.+..+ ...+.+++..+.+++||++|++.+..++..++++++++++|||++++
T Consensus 6 iG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~ 85 (161)
T cd01861 6 LGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNR 85 (161)
T ss_pred ECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCH
Confidence 69999999999999999998877788887544 77778888888999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++|+.+..|+..+...... . .|+++++||+|+...+.+..++...+++..+++++++||++|+|
T Consensus 86 ~s~~~~~~~~~~~~~~~~~-~-------------~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 149 (161)
T cd01861 86 QSFDNTDKWIDDVRDERGN-D-------------VIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHN 149 (161)
T ss_pred HHHHHHHHHHHHHHHhCCC-C-------------CEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCC
Confidence 9999999999988765433 2 99999999999976677888889999999999999999999986
No 81
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=6.1e-32 Score=179.57 Aligned_cols=139 Identities=22% Similarity=0.361 Sum_probs=119.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccc-eEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIEN-TFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
||++|||||||+++|+.+.+...+.++.+. .+...+.++++.+.+.+||++|++++..+++.+++++|++|+|||++++
T Consensus 6 vG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 85 (161)
T cd04124 6 LGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRK 85 (161)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCH
Confidence 699999999999999999988777777764 3466677888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+..... +.|+++|+||+|+... . ..+...+++..+++++++||++|.|
T Consensus 86 ~s~~~~~~~~~~i~~~~~---------------~~p~ivv~nK~Dl~~~--~-~~~~~~~~~~~~~~~~~~Sa~~~~g 145 (161)
T cd04124 86 ITYKNLSKWYEELREYRP---------------EIPCIVVANKIDLDPS--V-TQKKFNFAEKHNLPLYYVSAADGTN 145 (161)
T ss_pred HHHHHHHHHHHHHHHhCC---------------CCcEEEEEECccCchh--H-HHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 999999999988865432 1899999999998432 2 3446677777889999999999986
No 82
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=7.4e-32 Score=179.14 Aligned_cols=143 Identities=34% Similarity=0.512 Sum_probs=129.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++++++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++++|++++|||++++
T Consensus 7 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 86 (163)
T cd01860 7 LGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSE 86 (163)
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCH
Confidence 69999999999999999998877788888655 67788899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++++.+..|+..+...... . +|+++++||+|+...+.+...+...++..++++++++||++|.|
T Consensus 87 ~s~~~~~~~~~~~~~~~~~-~-------------~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 150 (163)
T cd01860 87 ESFEKAKSWVKELQRNASP-N-------------IIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGEN 150 (163)
T ss_pred HHHHHHHHHHHHHHHhCCC-C-------------CeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence 9999999999998877542 2 99999999999977777888889999999999999999999986
No 83
>KOG0393|consensus
Probab=100.00 E-value=7e-33 Score=185.36 Aligned_cols=142 Identities=30% Similarity=0.487 Sum_probs=131.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEEC-CeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMN-NQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
||+..+|||+|+..+..+.|+..|.||+-+.|...+.++ ++.+.+.+|||+||++|..+++.-+..+|+||+||+++++
T Consensus 10 VGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p 89 (198)
T KOG0393|consen 10 VGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSP 89 (198)
T ss_pred ECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCCh
Confidence 799999999999999999999999999999999999995 9999999999999999999999999999999999999999
Q ss_pred hhHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-
Q psy1873 80 KSFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWKA- 145 (157)
Q Consensus 80 ~s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~- 145 (157)
+||+++ ..|+.++...++. +|+++||+|.||.+. ..++.++++.++++.|+
T Consensus 90 ~S~~nv~~kW~pEi~~~cp~---------------vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~ 154 (198)
T KOG0393|consen 90 ESFENVKSKWIPEIKHHCPN---------------VPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAV 154 (198)
T ss_pred hhHHHHHhhhhHHHHhhCCC---------------CCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcc
Confidence 999998 7888888877754 999999999999743 36888999999999995
Q ss_pred cEEEeccccCCC
Q psy1873 146 GFVEASAKQDDY 157 (157)
Q Consensus 146 ~~~e~Sa~~~~~ 157 (157)
.|+||||++.+|
T Consensus 155 ~y~EcSa~tq~~ 166 (198)
T KOG0393|consen 155 KYLECSALTQKG 166 (198)
T ss_pred eeeeehhhhhCC
Confidence 899999999876
No 84
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=3.5e-32 Score=182.08 Aligned_cols=141 Identities=23% Similarity=0.305 Sum_probs=121.8
Q ss_pred CCCCCCChhhhHhhhhccccc-ccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS 78 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~ 78 (157)
||++|||||||+++|+++.+. ..+.+|++..+ ...+.+++..+.+.+||++|++.+..++..+++++|++|+|||+++
T Consensus 10 vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~ 89 (169)
T cd01892 10 LGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSD 89 (169)
T ss_pred ECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCC
Confidence 699999999999999999998 88999998766 4667888888889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEeccccCCC
Q psy1873 79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVEASAKQDDY 157 (157)
Q Consensus 79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~ 157 (157)
+++++.+..|+..+... .. +|+++|+||+|+.+.+.+...+...+++.+++ .++++||++|+|
T Consensus 90 ~~s~~~~~~~~~~~~~~---~~-------------~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (169)
T cd01892 90 PKSFSYCAEVYKKYFML---GE-------------IPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDS 153 (169)
T ss_pred HHHHHHHHHHHHHhccC---CC-------------CeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCcc
Confidence 99999998888765321 12 99999999999976555555567788888887 579999999986
No 85
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=8.6e-32 Score=178.85 Aligned_cols=143 Identities=37% Similarity=0.554 Sum_probs=127.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|.+..+...+.++++..+ ...+..++..+.+.+||++|++.+..++..+++.+|++|+|||++++
T Consensus 6 ~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~ 85 (164)
T smart00175 6 IGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNR 85 (164)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCH
Confidence 69999999999999999988877778887555 56777888888999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+....... +|+++++||+|+...+.+..+++..+++.++++++|+||++|+|
T Consensus 86 ~s~~~~~~~l~~~~~~~~~~--------------~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 149 (164)
T smart00175 86 ESFENLKNWLKELREYADPN--------------VVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTN 149 (164)
T ss_pred HHHHHHHHHHHHHHHhCCCC--------------CeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 99999999998887765432 99999999999877677888889999999999999999999986
No 86
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=9.5e-32 Score=178.86 Aligned_cols=142 Identities=27% Similarity=0.389 Sum_probs=123.0
Q ss_pred CCCCCCChhhhHhhhhcc--cccccccCCccceE-EEEEEEC-CeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEEC
Q psy1873 1 MGYRSVGKSSLSIQFVDG--QFVDSYDPTIENTF-VKTTRMN-NQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSI 76 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~--~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~ 76 (157)
||++|||||||++++..+ .+...+.+|++..+ ...+.++ +..+.+.+||++|++.+..++..+++++|++++|||+
T Consensus 6 vG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 85 (164)
T cd04101 6 VGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDV 85 (164)
T ss_pred ECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 699999999999999865 67788889988554 4555554 5678999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCC
Q psy1873 77 TSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156 (157)
Q Consensus 77 ~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 156 (157)
+++++++.+..|+..+..... . .|+++||||+|+.+.+++...++..++..++++++++||++|.
T Consensus 86 ~~~~s~~~~~~~~~~~~~~~~--~-------------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 150 (164)
T cd04101 86 SNKASFENCSRWVNKVRTASK--H-------------MPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGV 150 (164)
T ss_pred cCHHHHHHHHHHHHHHHHhCC--C-------------CCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 999999999999988876542 2 8999999999997777778777888888888999999999998
Q ss_pred C
Q psy1873 157 Y 157 (157)
Q Consensus 157 ~ 157 (157)
|
T Consensus 151 g 151 (164)
T cd04101 151 G 151 (164)
T ss_pred C
Confidence 6
No 87
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=100.00 E-value=2.3e-31 Score=176.73 Aligned_cols=144 Identities=36% Similarity=0.652 Sum_probs=130.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++++...+...+.++++..+......++..+.+.+||++|+.++..++..+++.+++++++||++++.
T Consensus 6 ~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 85 (164)
T cd04139 6 VGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDME 85 (164)
T ss_pred ECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHH
Confidence 69999999999999999999888888888778778888989999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+|+.+..|+..+........ +|+++|+||+|+...+.....+...+++.++++++++||++|+|
T Consensus 86 s~~~~~~~~~~~~~~~~~~~-------------~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 149 (164)
T cd04139 86 SFTATAEFREQILRVKDDDN-------------VPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQN 149 (164)
T ss_pred HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCC
Confidence 99999999999988754333 99999999999976566777888889999999999999999986
No 88
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=2.1e-31 Score=185.24 Aligned_cols=142 Identities=32% Similarity=0.457 Sum_probs=122.4
Q ss_pred CCCCCCChhhhHhhhhccccc-ccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhcc-CCCEEEEEEECC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM-DIHGYVLVYSIT 77 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~~~~ilv~d~~ 77 (157)
+|++|||||||+++|+.+.+. ..+.++.+ +.+...+.+++..+.+.+||++|++ ..+...++. ++|++++|||++
T Consensus 6 vG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~t 83 (221)
T cd04148 6 LGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVT 83 (221)
T ss_pred ECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECC
Confidence 699999999999999988886 67777776 5557788888989999999999998 334455666 999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 78 SHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 78 ~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++.+|+.+..|+..+........ +|+++|+||+|+...+.+..+++..++..++++|+|+||++|.|
T Consensus 84 d~~S~~~~~~~~~~l~~~~~~~~-------------~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~g 150 (221)
T cd04148 84 DRSSFERASELRIQLRRNRQLED-------------RPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHN 150 (221)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCC-------------CCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCC
Confidence 99999999999988876543223 99999999999988888888889999999999999999999986
No 89
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=4.2e-31 Score=175.27 Aligned_cols=143 Identities=32% Similarity=0.504 Sum_probs=126.1
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|.+..+...+.++.+..+ ...+.+++..+.+++||++|++.+..++..+++.+|++++|||++++
T Consensus 6 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 85 (161)
T cd01863 6 IGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRR 85 (161)
T ss_pred ECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCH
Confidence 69999999999999999988777778888655 45567788888999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++++.+..|+..+........ .|++++|||+|+. .+.+..++...++...+++++++||++|+|
T Consensus 86 ~s~~~~~~~~~~i~~~~~~~~-------------~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 149 (161)
T cd01863 86 DTFTNLETWLNELETYSTNND-------------IVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDG 149 (161)
T ss_pred HHHHhHHHHHHHHHHhCCCCC-------------CcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCC
Confidence 999999999988877765444 9999999999986 456667889999999999999999999986
No 90
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.98 E-value=2.4e-31 Score=182.03 Aligned_cols=155 Identities=21% Similarity=0.200 Sum_probs=123.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEEC-----CeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMN-----NQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVY 74 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 74 (157)
||+++||||||+++|+++.|...+.+|++..+ .+.+.++ ++.+.+++||++|+++|..+++.++++++++|+||
T Consensus 6 vGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVy 85 (202)
T cd04102 6 VGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVH 85 (202)
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEE
Confidence 69999999999999999999988999998655 4445553 57789999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHHhccccCCC-----CCCCCCCCCCCcEEEEEeCCCCCCCceecHHH----HHHHHHHhCC
Q psy1873 75 SITSHKSFEVVQILYDKLLDMTGKIQNSS-----VKSPTSCVSSVPIVLVGNKKDLHMERMISYDE----GKRLAESWKA 145 (157)
Q Consensus 75 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~----~~~~~~~~~~ 145 (157)
|+++++||+++..|+..+........... ..........+|++|||||+|+.+++.+..+. ...++++.|+
T Consensus 86 Dvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~ 165 (202)
T cd04102 86 DLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNA 165 (202)
T ss_pred ECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHHHhcCC
Confidence 99999999999999999986542110000 00000112348999999999997766665553 4567899999
Q ss_pred cEEEeccccC
Q psy1873 146 GFVEASAKQD 155 (157)
Q Consensus 146 ~~~e~Sa~~~ 155 (157)
+.++.++++.
T Consensus 166 ~~i~~~c~~~ 175 (202)
T cd04102 166 EEINLNCTNG 175 (202)
T ss_pred ceEEEecCCc
Confidence 9999999865
No 91
>PLN03118 Rab family protein; Provisional
Probab=99.98 E-value=4.8e-31 Score=182.37 Aligned_cols=143 Identities=31% Similarity=0.503 Sum_probs=122.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
||++|||||||+++|+.+.+. .+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++++|++|+|||++++
T Consensus 20 vG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~ 98 (211)
T PLN03118 20 IGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRR 98 (211)
T ss_pred ECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCH
Confidence 699999999999999988764 5667777555 56677888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHh-ccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMT-GKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++|+.+..+|...+... .... .|+++||||+|+...+.+..+++..++..++++|+|+||++|+|
T Consensus 99 ~sf~~~~~~~~~~~~~~~~~~~-------------~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~ 164 (211)
T PLN03118 99 ETFTNLSDVWGKEVELYSTNQD-------------CVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTREN 164 (211)
T ss_pred HHHHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 99999987555544432 2222 89999999999987778888889999999999999999999986
No 92
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.98 E-value=5.3e-31 Score=174.55 Aligned_cols=143 Identities=36% Similarity=0.554 Sum_probs=126.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.+++...+ ...+.+.+..+.+.+||++|++.+..+++.+++++|++++|||++++
T Consensus 6 ~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 85 (162)
T cd04123 6 LGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDA 85 (162)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCH
Confidence 69999999999999999988777667776444 56667778888999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++++.+..|+..+...... . +|+++++||+|+...+++..++...+++..+++++++||++|+|
T Consensus 86 ~s~~~~~~~~~~i~~~~~~-~-------------~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g 149 (162)
T cd04123 86 DSFQKVKKWIKELKQMRGN-N-------------ISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKG 149 (162)
T ss_pred HHHHHHHHHHHHHHHhCCC-C-------------CeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 9999999998888766543 2 99999999999987778888888889999999999999999986
No 93
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.98 E-value=7.2e-31 Score=176.39 Aligned_cols=142 Identities=32% Similarity=0.508 Sum_probs=122.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|++..+...+.++++.+.+.+||++|++++..++..++.++|++++|||+++++
T Consensus 7 iG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~ 86 (175)
T cd01870 7 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD 86 (175)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHH
Confidence 69999999999999999999888899998777677788888899999999999999999989999999999999999999
Q ss_pred hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-c
Q psy1873 81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWKA-G 146 (157)
Q Consensus 81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~ 146 (157)
+|+.+. .|+..+..... . .|+++|+||+|+.+. ..+...++++++...+. +
T Consensus 87 s~~~~~~~~~~~~~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~ 151 (175)
T cd01870 87 SLENIPEKWTPEVKHFCP--N-------------VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFG 151 (175)
T ss_pred HHHHHHHHHHHHHHhhCC--C-------------CCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcE
Confidence 999985 46666554322 2 999999999998532 34556788889988885 8
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
+++|||++|.|
T Consensus 152 ~~~~Sa~~~~~ 162 (175)
T cd01870 152 YMECSAKTKEG 162 (175)
T ss_pred EEEeccccCcC
Confidence 99999999986
No 94
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.97 E-value=1.2e-30 Score=174.64 Aligned_cols=147 Identities=31% Similarity=0.463 Sum_probs=126.8
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||++++.++.+...+.++++..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++|++||++++
T Consensus 6 iG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 85 (172)
T cd01862 6 LGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNP 85 (172)
T ss_pred ECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCH
Confidence 69999999999999999988877778877544 66778888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK-AGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~ 157 (157)
.+++.+..|...++....... ...+|+++|+||+|+..++.+..++...+++..+ .+++++||++|+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~----------~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 154 (172)
T cd01862 86 KSFESLDSWRDEFLIQASPSD----------PENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAIN 154 (172)
T ss_pred HHHHHHHHHHHHHHHhcCccC----------CCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCC
Confidence 999999889888776654210 1129999999999997666777788888988888 7999999999986
No 95
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=8.1e-32 Score=179.53 Aligned_cols=136 Identities=20% Similarity=0.283 Sum_probs=114.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
||++|||||||+++|+++.+...+.||++..+ ..++...+.+++||++|++++..++..+++++|++|+|||++++.
T Consensus 5 vG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~ 81 (164)
T cd04162 5 LGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSE 81 (164)
T ss_pred ECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHH
Confidence 69999999999999999988888889987433 334556788999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecH----HHHHHHHHHhCCcEEEecccc
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISY----DEGKRLAESWKAGFVEASAKQ 154 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~e~Sa~~ 154 (157)
++..++.|+..+..... . +|+++|+||.|+...+.+.. .++..+++..++.+++|||++
T Consensus 82 s~~~~~~~l~~~~~~~~--~-------------~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~ 144 (164)
T cd04162 82 RLPLARQELHQLLQHPP--D-------------LPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDD 144 (164)
T ss_pred HHHHHHHHHHHHHhCCC--C-------------CcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecC
Confidence 99999999888864432 2 99999999999976654432 235666777788999999998
No 96
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=1e-30 Score=176.48 Aligned_cols=144 Identities=66% Similarity=1.082 Sum_probs=128.8
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||++++.++.+...+.+|+...+...+.+++..+.+++||++|++++..++..++..+++++++||+++..
T Consensus 7 ~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 86 (180)
T cd04137 7 LGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRK 86 (180)
T ss_pred ECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHH
Confidence 69999999999999999998888888888777777788888889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+++.+..|+..+.+...... .|+++++||+|+...+.+...+...+++.++++++++||++|+|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~-------------~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 150 (180)
T cd04137 87 SFEVVKVIYDKILDMLGKES-------------VPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENEN 150 (180)
T ss_pred HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 99999999999888654333 89999999999977677777778888888899999999999976
No 97
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=2.2e-30 Score=176.05 Aligned_cols=142 Identities=31% Similarity=0.500 Sum_probs=122.7
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|..+.+...+.+|+...+...+.+++..+.+.+||++|++.+..+.+.+++++++++++||+++++
T Consensus 7 vG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~ 86 (187)
T cd04129 7 VGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPD 86 (187)
T ss_pred ECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHH
Confidence 69999999999999998888877888887777777788888889999999999999888888899999999999999999
Q ss_pred hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC----------CceecHHHHHHHHHHhCC-cEE
Q psy1873 81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM----------ERMISYDEGKRLAESWKA-GFV 148 (157)
Q Consensus 81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~ 148 (157)
+|+.+. .|+..+..... ++|+++||||+|+.+ .+.+..+++..+++.++. +||
T Consensus 87 s~~~~~~~~~~~i~~~~~---------------~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (187)
T cd04129 87 SLENVRTKWIEEVRRYCP---------------NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYM 151 (187)
T ss_pred HHHHHHHHHHHHHHHhCC---------------CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEE
Confidence 999996 57777765432 299999999999853 345667889999999995 899
Q ss_pred EeccccCCC
Q psy1873 149 EASAKQDDY 157 (157)
Q Consensus 149 e~Sa~~~~~ 157 (157)
||||++|+|
T Consensus 152 e~Sa~~~~~ 160 (187)
T cd04129 152 ECSALTGEG 160 (187)
T ss_pred EccCCCCCC
Confidence 999999986
No 98
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=2.1e-30 Score=171.37 Aligned_cols=144 Identities=45% Similarity=0.763 Sum_probs=130.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||++++++..+...+.++.+..+...+..++..+.+++||++|+..+..++..+++.++++++|||+++++
T Consensus 5 ~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 84 (160)
T cd00876 5 LGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRE 84 (160)
T ss_pred ECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 69999999999999999888888888888767777788888889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+++.+..|+..+........ .|+++++||+|+...+.+..+++..++..++++++++||++|+|
T Consensus 85 s~~~~~~~~~~~~~~~~~~~-------------~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~ 148 (160)
T cd00876 85 SFEEIKGYREQILRVKDDED-------------IPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNIN 148 (160)
T ss_pred HHHHHHHHHHHHHHhcCCCC-------------CcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCC
Confidence 99999999999887765333 99999999999987778888899999999899999999999976
No 99
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=4.1e-30 Score=176.12 Aligned_cols=144 Identities=31% Similarity=0.519 Sum_probs=123.6
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+.+.+...+.+|+...+...+.+++..+.+++||++|+..+..++..+++++|++|+|||++++.
T Consensus 5 vG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~ 84 (198)
T cd04147 5 MGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPE 84 (198)
T ss_pred ECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHH
Confidence 69999999999999999999888888887666667788888889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC-CceecHHHHHHHHH-HhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM-ERMISYDEGKRLAE-SWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~ 157 (157)
+++.+..|+..+........ +|++||+||.|+.. .+.+...+...... ..+++++++||++|.|
T Consensus 85 s~~~~~~~~~~i~~~~~~~~-------------~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~g 150 (198)
T cd04147 85 SFEEVERLREEILEVKEDKF-------------VPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNEN 150 (198)
T ss_pred HHHHHHHHHHHHHHhcCCCC-------------CcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCC
Confidence 99999999998887765433 99999999999865 45666555554443 4568999999999986
No 100
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=7.3e-30 Score=170.53 Aligned_cols=143 Identities=29% Similarity=0.465 Sum_probs=124.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||++++..+.+...+.+|++..+ ...+.+++..+.+.+||++|++.+...+..+++.+|++++|||++++
T Consensus 13 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 92 (169)
T cd04114 13 IGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCE 92 (169)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCH
Confidence 69999999999999998888777777777433 66778888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+....... +|+++|+||+|+.+.+.+.....+.+.+....+++++||++|+|
T Consensus 93 ~s~~~~~~~~~~l~~~~~~~--------------~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g 156 (169)
T cd04114 93 ESFRCLPEWLREIEQYANNK--------------VITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDN 156 (169)
T ss_pred HHHHHHHHHHHHHHHhCCCC--------------CeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence 99999999988776554322 99999999999987777777778888888788999999999986
No 101
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=8.8e-30 Score=170.31 Aligned_cols=142 Identities=32% Similarity=0.525 Sum_probs=122.1
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.++....+...+..++..+.+++||++|++.+..++..+++.+|++++|||++++.
T Consensus 6 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 85 (171)
T cd00157 6 VGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPS 85 (171)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHH
Confidence 69999999999999999999878888887777777788888999999999999999989999999999999999999999
Q ss_pred hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc-----------eecHHHHHHHHHHhCC-cE
Q psy1873 81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER-----------MISYDEGKRLAESWKA-GF 147 (157)
Q Consensus 81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~ 147 (157)
++..+. .|+..+..... . .|+++|+||+|+.... .+...++..++..+++ +|
T Consensus 86 s~~~~~~~~~~~~~~~~~--~-------------~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 150 (171)
T cd00157 86 SFENVKTKWIPEIRHYCP--N-------------VPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGY 150 (171)
T ss_pred HHHHHHHHHHHHHHhhCC--C-------------CCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEE
Confidence 998875 45555554433 2 9999999999986543 3467788889999998 99
Q ss_pred EEeccccCCC
Q psy1873 148 VEASAKQDDY 157 (157)
Q Consensus 148 ~e~Sa~~~~~ 157 (157)
+++||++|+|
T Consensus 151 ~~~Sa~~~~g 160 (171)
T cd00157 151 MECSALTQEG 160 (171)
T ss_pred EEeecCCCCC
Confidence 9999999986
No 102
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=1.2e-30 Score=174.51 Aligned_cols=138 Identities=17% Similarity=0.210 Sum_probs=110.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|..+.+. .+.||++..+. .+.. ..+.+++||++|+++++.+++.+++++|++|+|||++++.
T Consensus 15 ~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~-~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~ 90 (168)
T cd04149 15 LGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRD 90 (168)
T ss_pred ECcCCCCHHHHHHHHccCCCc-cccCCcccceE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchh
Confidence 699999999999999987775 35678775443 2233 4578999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-----hCCcEEEeccccC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES-----WKAGFVEASAKQD 155 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~e~Sa~~~ 155 (157)
+++++..|+.+++....... +|++||+||+|+.+ .+..+++..++.. ..+.++++||++|
T Consensus 91 s~~~~~~~~~~~~~~~~~~~-------------~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g 155 (168)
T cd04149 91 RIDEARQELHRIINDREMRD-------------ALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSG 155 (168)
T ss_pred hHHHHHHHHHHHhcCHhhcC-------------CcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCC
Confidence 99999999888876432222 89999999999854 3455666665422 2247899999999
Q ss_pred CC
Q psy1873 156 DY 157 (157)
Q Consensus 156 ~~ 157 (157)
+|
T Consensus 156 ~g 157 (168)
T cd04149 156 DG 157 (168)
T ss_pred CC
Confidence 87
No 103
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=1.4e-29 Score=166.73 Aligned_cols=143 Identities=37% Similarity=0.597 Sum_probs=127.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|+++||||||++++.++.+...+.+|.+..+ ...+..++....+.+||++|+..+..++..+++++|++++|+|++++
T Consensus 6 ~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 85 (159)
T cd00154 6 IGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNR 85 (159)
T ss_pred ECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCH
Confidence 69999999999999999998887778887555 66777778888999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++++.+..|+..+....... .|++|++||+|+........++...++..++.+++++||+++.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~--------------~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 149 (159)
T cd00154 86 ESFENLDKWLKELKEYAPEN--------------IPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGEN 149 (159)
T ss_pred HHHHHHHHHHHHHHHhCCCC--------------CcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 99999999999888776432 99999999999975667778889999999899999999999875
No 104
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=1.5e-30 Score=172.62 Aligned_cols=138 Identities=19% Similarity=0.257 Sum_probs=107.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|.+|||||||++++..+.+. .+.||++..+. .+.. ..+.+.+||++|++++..++..+++++|++|+|||++++.
T Consensus 6 ~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~ 81 (159)
T cd04150 6 VGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 81 (159)
T ss_pred ECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH
Confidence 699999999999999888886 46788875442 2333 4578899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHH-HHHHH----HHhCCcEEEeccccC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDE-GKRLA----ESWKAGFVEASAKQD 155 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~-~~~~~----~~~~~~~~e~Sa~~~ 155 (157)
+++.+..|+..++....... .|++|++||+|+.+.. ...+ ...++ ...++.++++||++|
T Consensus 82 s~~~~~~~~~~~~~~~~~~~-------------~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g 146 (159)
T cd04150 82 RIGEAREELQRMLNEDELRD-------------AVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSG 146 (159)
T ss_pred HHHHHHHHHHHHHhcHHhcC-------------CCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCC
Confidence 99999998888875433222 8999999999995432 2223 22222 122346789999999
Q ss_pred CC
Q psy1873 156 DY 157 (157)
Q Consensus 156 ~~ 157 (157)
+|
T Consensus 147 ~g 148 (159)
T cd04150 147 DG 148 (159)
T ss_pred CC
Confidence 87
No 105
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=9.3e-30 Score=170.33 Aligned_cols=138 Identities=17% Similarity=0.232 Sum_probs=112.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|+++||||||+++|.+..+.. +.+|++..+. .+.. ..+.+++||++|++++..++..+++++|++++|||+++++
T Consensus 5 vG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 5 LGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 6999999999999999987754 6788775442 2333 4578899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC------CcEEEecccc
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK------AGFVEASAKQ 154 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~e~Sa~~ 154 (157)
+++++..|+..++....... .|++|++||+|+.+ .++.++.+.++...+ +.+++|||++
T Consensus 81 s~~~~~~~~~~~~~~~~~~~-------------~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 145 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRD-------------ALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARS 145 (169)
T ss_pred HHHHHHHHHHHHhcChhhCC-------------CCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCC
Confidence 99999999999886543222 89999999999854 466677777664332 3688999999
Q ss_pred CCC
Q psy1873 155 DDY 157 (157)
Q Consensus 155 ~~~ 157 (157)
|.|
T Consensus 146 g~g 148 (169)
T cd04158 146 GMG 148 (169)
T ss_pred CCC
Confidence 986
No 106
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.4e-29 Score=171.18 Aligned_cols=135 Identities=17% Similarity=0.253 Sum_probs=106.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|+++||||||++++..+.+. .+.||++..+. .+.. ..+.+++||++|++++..+|..+++++|++|+|||+++++
T Consensus 23 vG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~ 98 (181)
T PLN00223 23 VGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRD 98 (181)
T ss_pred ECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHH
Confidence 699999999999999988776 46788875442 2333 4578999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC--------cEEEecc
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA--------GFVEASA 152 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~e~Sa 152 (157)
+++++..++..++...... .+|++|+|||+|+.+. +..++ +.+.+++ .+++|||
T Consensus 99 s~~~~~~~l~~~l~~~~~~-------------~~piilv~NK~Dl~~~--~~~~~---~~~~l~l~~~~~~~~~~~~~Sa 160 (181)
T PLN00223 99 RVVEARDELHRMLNEDELR-------------DAVLLVFANKQDLPNA--MNAAE---ITDKLGLHSLRQRHWYIQSTCA 160 (181)
T ss_pred HHHHHHHHHHHHhcCHhhC-------------CCCEEEEEECCCCCCC--CCHHH---HHHHhCccccCCCceEEEeccC
Confidence 9999988888776543222 2999999999998653 23333 3333343 3668999
Q ss_pred ccCCC
Q psy1873 153 KQDDY 157 (157)
Q Consensus 153 ~~~~~ 157 (157)
++|+|
T Consensus 161 ~~g~g 165 (181)
T PLN00223 161 TSGEG 165 (181)
T ss_pred CCCCC
Confidence 99987
No 107
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=5.7e-30 Score=172.30 Aligned_cols=138 Identities=18% Similarity=0.213 Sum_probs=106.6
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|..+.+. .+.||++..+. .+.. ..+.+++||++|++++..++..++++++++|+|||+++++
T Consensus 19 ~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~ 94 (175)
T smart00177 19 VGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRD 94 (175)
T ss_pred EcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHH
Confidence 699999999999999887775 46788875442 2333 3478999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEeccccC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE-----SWKAGFVEASAKQD 155 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~ 155 (157)
+++.+..|+..++....... +|++|||||+|+.+.. +..+...... ...+.++++||++|
T Consensus 95 s~~~~~~~l~~~~~~~~~~~-------------~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g 159 (175)
T smart00177 95 RIDEAREELHRMLNEDELRD-------------AVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSG 159 (175)
T ss_pred HHHHHHHHHHHHhhCHhhcC-------------CcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCC
Confidence 99999999988875432222 8999999999986432 2233222221 11235778999999
Q ss_pred CC
Q psy1873 156 DY 157 (157)
Q Consensus 156 ~~ 157 (157)
+|
T Consensus 160 ~g 161 (175)
T smart00177 160 DG 161 (175)
T ss_pred CC
Confidence 87
No 108
>PLN00023 GTP-binding protein; Provisional
Probab=99.96 E-value=6e-29 Score=178.38 Aligned_cols=143 Identities=22% Similarity=0.268 Sum_probs=114.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEEC-------------CeEEEEEEEeCCCCccCcCchhhhccC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMN-------------NQDYDLKLVDTAGQDEYSIFPAQYSMD 66 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~~~i~D~~g~~~~~~~~~~~~~~ 66 (157)
||+.|||||||+++|+++.+...+.+|++..+ .+.+.++ ++.+.++|||++|+++|..++..++++
T Consensus 27 LGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~ 106 (334)
T PLN00023 27 VGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQ 106 (334)
T ss_pred ECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhHHhccC
Confidence 69999999999999999999888999999665 4556654 356889999999999999999999999
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc---e---ecHHHHHHHH
Q psy1873 67 IHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER---M---ISYDEGKRLA 140 (157)
Q Consensus 67 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~---~---~~~~~~~~~~ 140 (157)
++++|+|||++++++|+++..|+..+............. ......+|++|||||+||...+ . +..++++.+|
T Consensus 107 AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~--~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A 184 (334)
T PLN00023 107 INGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSG--GPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWV 184 (334)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccc--cccCCCCcEEEEEECccccccccccccccccHHHHHHHH
Confidence 999999999999999999999999997764210000000 0001128999999999996542 2 3688999999
Q ss_pred HHhCC
Q psy1873 141 ESWKA 145 (157)
Q Consensus 141 ~~~~~ 145 (157)
+.+|+
T Consensus 185 ~~~g~ 189 (334)
T PLN00023 185 EKQGL 189 (334)
T ss_pred HHcCC
Confidence 99985
No 109
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=1.2e-28 Score=164.41 Aligned_cols=141 Identities=24% Similarity=0.269 Sum_probs=107.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
||++|||||||+++|.++.+...+.++ ...+.....+++..+.+.+||++|++.+...+..+++.+|++++|||++++.
T Consensus 6 vG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~ 84 (166)
T cd01893 6 IGDEGVGKSSLIMSLVSEEFPENVPRV-LPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPS 84 (166)
T ss_pred ECCCCCCHHHHHHHHHhCcCCccCCCc-ccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHH
Confidence 699999999999999999987665443 3334444566778889999999999988888788889999999999999999
Q ss_pred hHHHHHH-HHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHHHh-CC-cEEEeccccC
Q psy1873 81 SFEVVQI-LYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMI--SYDEGKRLAESW-KA-GFVEASAKQD 155 (157)
Q Consensus 81 s~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~--~~~~~~~~~~~~-~~-~~~e~Sa~~~ 155 (157)
+++.+.. |+..+.... . . .|+++|+||+|+.+.... ..++...++..+ ++ ++++|||++|
T Consensus 85 s~~~~~~~~~~~i~~~~-~-~-------------~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 149 (166)
T cd01893 85 TLERIRTKWLPLIRRLG-V-K-------------VPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTL 149 (166)
T ss_pred HHHHHHHHHHHHHHHhC-C-C-------------CCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccc
Confidence 9999864 555554433 2 2 999999999999664432 123333444443 33 8999999999
Q ss_pred CC
Q psy1873 156 DY 157 (157)
Q Consensus 156 ~~ 157 (157)
.|
T Consensus 150 ~~ 151 (166)
T cd01893 150 IN 151 (166)
T ss_pred cC
Confidence 86
No 110
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=7.7e-29 Score=166.43 Aligned_cols=138 Identities=20% Similarity=0.270 Sum_probs=109.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|.+..+ ..+.+|++.. ...+.++ .+.+.+||++|++.+..++..+++++|++++|||++++.
T Consensus 20 vG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 95 (173)
T cd04154 20 LGLDNAGKTTILKKLLGEDI-DTISPTLGFQ-IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRL 95 (173)
T ss_pred ECCCCCCHHHHHHHHccCCC-CCcCCccccc-eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHH
Confidence 69999999999999997754 4566777632 3344555 477899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEeccccC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE-----SWKAGFVEASAKQD 155 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~ 155 (157)
+++.+..|+..++....... +|++||+||+|+.+.. ..++...+++ ..+++++++||++|
T Consensus 96 s~~~~~~~~~~~~~~~~~~~-------------~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 160 (173)
T cd04154 96 RLDDCKRELKELLQEERLAG-------------ATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTG 160 (173)
T ss_pred HHHHHHHHHHHHHhChhhcC-------------CCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCC
Confidence 99999889888875432222 9999999999986532 4455555543 34578999999999
Q ss_pred CC
Q psy1873 156 DY 157 (157)
Q Consensus 156 ~~ 157 (157)
+|
T Consensus 161 ~g 162 (173)
T cd04154 161 EG 162 (173)
T ss_pred cC
Confidence 86
No 111
>PTZ00099 rab6; Provisional
Probab=99.96 E-value=2.7e-28 Score=164.05 Aligned_cols=126 Identities=36% Similarity=0.518 Sum_probs=113.0
Q ss_pred ccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHh
Q psy1873 18 GQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMT 96 (157)
Q Consensus 18 ~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~ 96 (157)
+.|.+.+.+|++..+ .+.+.+++..+.+.|||++|++++..++..+++++|++|+|||++++++|+.+..|+..++...
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 457778899999666 6778889999999999999999999999999999999999999999999999999999987654
Q ss_pred ccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 97 GKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.. . +|++|||||+|+...+.+..+++..++..+++.|+||||++|+|
T Consensus 83 ~~-~-------------~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~n 129 (176)
T PTZ00099 83 GK-D-------------VIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHN 129 (176)
T ss_pred CC-C-------------CeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence 32 2 89999999999977778889999999999999999999999986
No 112
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=2.1e-29 Score=170.54 Aligned_cols=138 Identities=17% Similarity=0.223 Sum_probs=105.6
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||++++..+.+.. +.||++..+. .+.. ..+.+++||++|++++..++..+++++|++|+|||+++++
T Consensus 23 vG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~ 98 (182)
T PTZ00133 23 VGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRE 98 (182)
T ss_pred EcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH
Confidence 6999999999999998887764 6678775443 3333 4578999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEeccccC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA-----ESWKAGFVEASAKQD 155 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~ 155 (157)
+++.+..++.+++...... .+|++|++||.|+.+. +..++..... +...+.++++||++|
T Consensus 99 s~~~~~~~l~~~~~~~~~~-------------~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg 163 (182)
T PTZ00133 99 RIGDAREELERMLSEDELR-------------DAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTA 163 (182)
T ss_pred HHHHHHHHHHHHHhCHhhc-------------CCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCC
Confidence 9999988888876543222 2899999999998542 2223322211 111235779999999
Q ss_pred CC
Q psy1873 156 DY 157 (157)
Q Consensus 156 ~~ 157 (157)
+|
T Consensus 164 ~g 165 (182)
T PTZ00133 164 QG 165 (182)
T ss_pred CC
Confidence 87
No 113
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.96 E-value=3.1e-28 Score=164.91 Aligned_cols=141 Identities=21% Similarity=0.259 Sum_probs=111.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEE-CCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRM-NNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS 78 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~ 78 (157)
+|++|||||||+++++.+.+... .+|.+... ...+.+ ++..+.+.+||++|++++..++..+++++|++|+|||+++
T Consensus 9 vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 87 (183)
T cd04152 9 LGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVD 87 (183)
T ss_pred ECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCC
Confidence 69999999999999998888654 57776333 333433 4467889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH------hCCcEEEecc
Q psy1873 79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES------WKAGFVEASA 152 (157)
Q Consensus 79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~e~Sa 152 (157)
+++++.+..|+..+........ .|++||+||+|+.. .+..++...+... .+++++++||
T Consensus 88 ~~~~~~~~~~~~~i~~~~~~~~-------------~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 152 (183)
T cd04152 88 VERMEEAKTELHKITRFSENQG-------------VPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACA 152 (183)
T ss_pred HHHHHHHHHHHHHHHhhhhcCC-------------CcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeec
Confidence 9999999989888876544333 99999999999854 3344545544421 1246899999
Q ss_pred ccCCC
Q psy1873 153 KQDDY 157 (157)
Q Consensus 153 ~~~~~ 157 (157)
++|+|
T Consensus 153 ~~~~g 157 (183)
T cd04152 153 IIGEG 157 (183)
T ss_pred ccCCC
Confidence 99987
No 114
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=5.2e-29 Score=166.45 Aligned_cols=138 Identities=21% Similarity=0.312 Sum_probs=107.8
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|.+. +...+.+|++.. ...+.. ..+.+++||++|+..++.++..++++++++|+|||++++.
T Consensus 5 ~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 5 VGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred ECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 699999999999999976 767778888854 233444 3477899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec----HHHHHHHHHHhC--CcEEEecccc
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS----YDEGKRLAESWK--AGFVEASAKQ 154 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~----~~~~~~~~~~~~--~~~~e~Sa~~ 154 (157)
+++.+..|+..++....... +|++||+||+|+...+... ......+++..+ +.+++|||++
T Consensus 81 s~~~~~~~l~~l~~~~~~~~-------------~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~ 147 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSG-------------KPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIE 147 (167)
T ss_pred HHHHHHHHHHHHHcCccccC-------------CcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEcee
Confidence 99999999998876533222 9999999999996644211 111233343333 5788899999
Q ss_pred C
Q psy1873 155 D 155 (157)
Q Consensus 155 ~ 155 (157)
|
T Consensus 148 g 148 (167)
T cd04161 148 G 148 (167)
T ss_pred C
Confidence 8
No 115
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=1.2e-27 Score=165.91 Aligned_cols=140 Identities=23% Similarity=0.347 Sum_probs=119.8
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++++.+.+...+.+|++..+ ...+..++..+.+.+||++|++++..++..++..++++++|||+++.
T Consensus 15 iG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 94 (215)
T PTZ00132 15 VGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSR 94 (215)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCH
Confidence 69999999999999999888888899998655 55566788889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+|..+..|+..+..... . .|++++|||+|+.+ +.+..+ ...+++..++.++++||++|.|
T Consensus 95 ~s~~~~~~~~~~i~~~~~--~-------------~~i~lv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~ 155 (215)
T PTZ00132 95 ITYKNVPNWHRDIVRVCE--N-------------IPIVLVGNKVDVKD-RQVKAR-QITFHRKKNLQYYDISAKSNYN 155 (215)
T ss_pred HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEECccCcc-ccCCHH-HHHHHHHcCCEEEEEeCCCCCC
Confidence 999999999988876542 2 89999999999854 334333 3467778889999999999875
No 116
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=2.6e-28 Score=161.87 Aligned_cols=141 Identities=19% Similarity=0.211 Sum_probs=105.8
Q ss_pred CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|.+..+ ...+.+|++.... ... ...+.+++||++|++++..++..+++++|++|+|+|++++
T Consensus 5 vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~ 81 (162)
T cd04157 5 VGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE-SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDR 81 (162)
T ss_pred ECCCCCCHHHHHHHHcccCCCcceecCccccceE-EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcH
Confidence 69999999999999998763 5667788874321 222 3457889999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH---H--HhCCcEEEecccc
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA---E--SWKAGFVEASAKQ 154 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~---~--~~~~~~~e~Sa~~ 154 (157)
.++..+..|+..++...... ...+|+++|+||+|+.+... ..+..... . ...++++++||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~-----------~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~ 148 (162)
T cd04157 82 LRLVVVKDELELLLNHPDIK-----------HRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALT 148 (162)
T ss_pred HHHHHHHHHHHHHHcCcccc-----------cCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCC
Confidence 99999988888876542110 11299999999999865322 22222211 1 1124689999999
Q ss_pred CCC
Q psy1873 155 DDY 157 (157)
Q Consensus 155 ~~~ 157 (157)
|+|
T Consensus 149 g~g 151 (162)
T cd04157 149 GEG 151 (162)
T ss_pred CCc
Confidence 986
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=6.2e-28 Score=159.87 Aligned_cols=139 Identities=22% Similarity=0.274 Sum_probs=107.5
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|.++.+.. ..+|++..+ ..+.. +..+.+.+||++|+..+..++..+++++|++++|+|.+++.
T Consensus 5 ~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~-~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~ 81 (160)
T cd04156 5 LGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV-EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEA 81 (160)
T ss_pred EcCCCCCHHHHHHHHhcCCccc-ccCccCcce-EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHH
Confidence 6999999999999999988764 357776433 22333 34578999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHH------HHHHHhCCcEEEecccc
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGK------RLAESWKAGFVEASAKQ 154 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~------~~~~~~~~~~~e~Sa~~ 154 (157)
++..+..|+..++....... .|+++++||+|+... ...++.. .++...++++++|||++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~-------------~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~ 146 (160)
T cd04156 82 RLDESQKELKHILKNEHIKG-------------VPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVT 146 (160)
T ss_pred HHHHHHHHHHHHHhchhhcC-------------CCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEeccccc
Confidence 99999999888876543222 999999999998542 2223322 22233346799999999
Q ss_pred CCC
Q psy1873 155 DDY 157 (157)
Q Consensus 155 ~~~ 157 (157)
|+|
T Consensus 147 ~~g 149 (160)
T cd04156 147 GEG 149 (160)
T ss_pred CCC
Confidence 987
No 118
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=3.1e-28 Score=163.71 Aligned_cols=138 Identities=19% Similarity=0.264 Sum_probs=107.8
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++++.+.+.. +.+|++..+ ..+.++ .+.+.+||++|++++...+..+++++|++++|+|+++++
T Consensus 21 ~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~-~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~ 96 (174)
T cd04153 21 VGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV-EEIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRE 96 (174)
T ss_pred ECCCCCCHHHHHHHHccCCCCC-cCCccccce-EEEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHH
Confidence 6999999999999999888875 467777544 233344 477899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHH-HHHHH----HHhCCcEEEeccccC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDE-GKRLA----ESWKAGFVEASAKQD 155 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~-~~~~~----~~~~~~~~e~Sa~~~ 155 (157)
++..+..++..++....... +|++|++||+|+... ++.++ ...+. +..+++++++||++|
T Consensus 97 ~~~~~~~~l~~~~~~~~~~~-------------~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g 161 (174)
T cd04153 97 RLPLTKEELYKMLAHEDLRK-------------AVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTG 161 (174)
T ss_pred HHHHHHHHHHHHHhchhhcC-------------CCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCC
Confidence 99999888888876543222 999999999998542 23333 22222 234567999999999
Q ss_pred CC
Q psy1873 156 DY 157 (157)
Q Consensus 156 ~~ 157 (157)
+|
T Consensus 162 ~g 163 (174)
T cd04153 162 EG 163 (174)
T ss_pred CC
Confidence 86
No 119
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=7.4e-28 Score=159.38 Aligned_cols=138 Identities=17% Similarity=0.214 Sum_probs=103.6
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|+++||||||++++..+.+.. +.+|++..+. .+.. ....+++||++|+.++..++..+++.++++|+|+|++++.
T Consensus 5 vG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 5 LGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE-TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred ECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 6999999999999998877753 4577764432 2333 4578899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHH-HHH----HHhCCcEEEeccccC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGK-RLA----ESWKAGFVEASAKQD 155 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~-~~~----~~~~~~~~e~Sa~~~ 155 (157)
++.....++..++....... .|+++++||+|+.+.. ...+.. .+. ...+.+++++||++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~-------------~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~ 145 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKG-------------AVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKG 145 (158)
T ss_pred HHHHHHHHHHHHHhchhhcC-------------CcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCC
Confidence 99888777776654432222 9999999999986432 222221 121 112357999999999
Q ss_pred CC
Q psy1873 156 DY 157 (157)
Q Consensus 156 ~~ 157 (157)
+|
T Consensus 146 ~g 147 (158)
T cd04151 146 EG 147 (158)
T ss_pred CC
Confidence 86
No 120
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=2.7e-27 Score=156.57 Aligned_cols=138 Identities=22% Similarity=0.257 Sum_probs=107.7
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|.+|||||||++++++..+ ..+.+|.+..+ ..+.+. .+.+.+||++|+..+..++..++++++++++|||+++++
T Consensus 5 iG~~~~GKssli~~~~~~~~-~~~~~t~~~~~-~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 5 LGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV-ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred EcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce-EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 69999999999999998874 34566666433 223443 467899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEeccccC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE-----SWKAGFVEASAKQD 155 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~ 155 (157)
++..+..|+..+........ .|+++++||+|+.... ..++...... ...++++++||++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~-------------~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 145 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKG-------------VPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTG 145 (158)
T ss_pred HHHHHHHHHHHHHhCcccCC-------------CcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCC
Confidence 99999999988877554333 9999999999986533 2233333322 23468999999999
Q ss_pred CC
Q psy1873 156 DY 157 (157)
Q Consensus 156 ~~ 157 (157)
.|
T Consensus 146 ~g 147 (158)
T cd00878 146 DG 147 (158)
T ss_pred CC
Confidence 86
No 121
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=9.4e-27 Score=158.41 Aligned_cols=138 Identities=21% Similarity=0.289 Sum_probs=110.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||++++.++.+. .+.+|.+.. ...+.+++ ..+.+||++|+..+..++..++++++++++|+|+++++
T Consensus 25 lG~~~~GKStLi~~l~~~~~~-~~~~T~~~~-~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~ 100 (190)
T cd00879 25 LGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT-SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPE 100 (190)
T ss_pred ECCCCCCHHHHHHHHhcCCCc-ccCCccCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHH
Confidence 699999999999999987764 566776643 23445554 67899999999999889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH----------------hC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES----------------WK 144 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~ 144 (157)
+++....|+..+........ .|++|++||+|+.. .+..++.+.++.. ..
T Consensus 101 s~~~~~~~~~~i~~~~~~~~-------------~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (190)
T cd00879 101 RFQESKEELDSLLSDEELAN-------------VPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRP 165 (190)
T ss_pred HHHHHHHHHHHHHcCccccC-------------CCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCcee
Confidence 99998888888876443323 99999999999853 5556666666643 12
Q ss_pred CcEEEeccccCCC
Q psy1873 145 AGFVEASAKQDDY 157 (157)
Q Consensus 145 ~~~~e~Sa~~~~~ 157 (157)
+.+++|||++|+|
T Consensus 166 ~~~~~~Sa~~~~g 178 (190)
T cd00879 166 IEVFMCSVVKRQG 178 (190)
T ss_pred EEEEEeEecCCCC
Confidence 4699999999986
No 122
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=1.5e-26 Score=154.19 Aligned_cols=139 Identities=22% Similarity=0.283 Sum_probs=106.5
Q ss_pred CCCCCCChhhhHhhhhcccc------cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF------VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVY 74 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 74 (157)
+|++|||||||++++..... ...+.+|++..+ ..+.++ ...+.+||++|++.+..++..++..++++++|+
T Consensus 5 vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vv 81 (167)
T cd04160 5 LGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI-GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHAIIYVI 81 (167)
T ss_pred EecCCCCHHHHHHHHhhhcccccCCcccccCCccccce-EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEEEE
Confidence 69999999999999976422 234456665443 234444 467899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-------hCCcE
Q psy1873 75 SITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES-------WKAGF 147 (157)
Q Consensus 75 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~ 147 (157)
|.++++++..+..|+..+........ +|+++++||+|+... ....+...+... .++++
T Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~~~~-------------~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 146 (167)
T cd04160 82 DSTDRERFEESKSALEKVLRNEALEG-------------VPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLV 146 (167)
T ss_pred ECchHHHHHHHHHHHHHHHhChhhcC-------------CCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEE
Confidence 99999999999999888876543333 999999999998543 333444444322 24689
Q ss_pred EEeccccCCC
Q psy1873 148 VEASAKQDDY 157 (157)
Q Consensus 148 ~e~Sa~~~~~ 157 (157)
+++||++|+|
T Consensus 147 ~~~Sa~~g~g 156 (167)
T cd04160 147 LPVSALEGTG 156 (167)
T ss_pred EEeeCCCCcC
Confidence 9999999986
No 123
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=1.9e-26 Score=151.89 Aligned_cols=139 Identities=22% Similarity=0.321 Sum_probs=109.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||++++.+..+...+.+|++..+. .+..++ +.+.+||++|+..+..++..+++.+|++++|+|++++.
T Consensus 5 ~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 5 VGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR-KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EcCCCCCHHHHHHHHccCCCCcCccCCCCcceE-EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 699999999999999999998888888885543 233333 77999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEeccccC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA-----ESWKAGFVEASAKQD 155 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~ 155 (157)
++..+..|+..+........ +|+++++||+|+.+.... .+..... ....++++++||++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~-------------~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 146 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEG-------------IPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEK 146 (159)
T ss_pred HHHHHHHHHHHHHcChhhcC-------------CCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccC
Confidence 99998888888776432222 899999999998654322 2222111 122368999999999
Q ss_pred CC
Q psy1873 156 DY 157 (157)
Q Consensus 156 ~~ 157 (157)
.|
T Consensus 147 ~g 148 (159)
T cd04159 147 TN 148 (159)
T ss_pred CC
Confidence 86
No 124
>KOG4252|consensus
Probab=99.94 E-value=1.5e-28 Score=159.95 Aligned_cols=142 Identities=32% Similarity=0.437 Sum_probs=133.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|+.+|||||+++|+|.+-|...|..|++..+ ...+.+++..+++.+||++||++|..+.+.|++++.+.+|||+-+|+
T Consensus 26 vGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr 105 (246)
T KOG4252|consen 26 VGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDR 105 (246)
T ss_pred ECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccH
Confidence 69999999999999999999999999999666 77788888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.||+.+..|..++...... +|.++|-||+|+.+..++...+++.+++.+++.++.+|+++.-|
T Consensus 106 ~SFea~~~w~~kv~~e~~~---------------IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~N 168 (246)
T KOG4252|consen 106 YSFEATLEWYNKVQKETER---------------IPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFN 168 (246)
T ss_pred HHHHHHHHHHHHHHHHhcc---------------CCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 9999999999999888765 99999999999999999999999999999999999999998754
No 125
>KOG0073|consensus
Probab=99.94 E-value=1.3e-25 Score=144.08 Aligned_cols=138 Identities=22% Similarity=0.342 Sum_probs=111.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|..|+|||||+++|.+.. .+...||.+.. .+++.+ +.+.+.+||.+||...+..|+.||..+|++|+|+|.+|+.
T Consensus 22 LGLdNsGKTti~~kl~~~~-~~~i~pt~gf~-Iktl~~--~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~ 97 (185)
T KOG0073|consen 22 LGLDNSGKTTIVKKLLGED-TDTISPTLGFQ-IKTLEY--KGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRM 97 (185)
T ss_pred EecCCCCchhHHHHhcCCC-ccccCCcccee-eEEEEe--cceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHH
Confidence 5999999999999998765 44556776633 333344 4588999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHH------HHHHHHHhCCcEEEecccc
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDE------GKRLAESWKAGFVEASAKQ 154 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~------~~~~~~~~~~~~~e~Sa~~ 154 (157)
++++....+..++...+--+ .|++|++||+|+.. .+..++ ...++++..++.+-|||.+
T Consensus 98 r~~e~~~~L~~lL~eerlaG-------------~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~t 162 (185)
T KOG0073|consen 98 RMQECKQELTELLVEERLAG-------------APLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVT 162 (185)
T ss_pred HHHHHHHHHHHHHhhhhhcC-------------CceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEeccc
Confidence 99999988888887554333 99999999999963 222222 3445577789999999999
Q ss_pred CCC
Q psy1873 155 DDY 157 (157)
Q Consensus 155 ~~~ 157 (157)
|++
T Consensus 163 ge~ 165 (185)
T KOG0073|consen 163 GED 165 (185)
T ss_pred ccc
Confidence 975
No 126
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.94 E-value=8.3e-26 Score=152.01 Aligned_cols=138 Identities=22% Similarity=0.328 Sum_probs=109.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||++++..+.... ..||.+... ..+..++ +.+.+||.+|+..++.+|+.++++++++|+|+|.++++
T Consensus 20 lGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~-~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~ 95 (175)
T PF00025_consen 20 LGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI-EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPE 95 (175)
T ss_dssp EESTTSSHHHHHHHHHSSSEEE-EEEESSEEE-EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGG
T ss_pred ECCCccchHHHHHHhhhccccc-cCccccccc-ceeeeCc--EEEEEEeccccccccccceeeccccceeEEEEecccce
Confidence 5999999999999998765543 667877433 3344544 67899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH------hCCcEEEecccc
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES------WKAGFVEASAKQ 154 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~e~Sa~~ 154 (157)
.+.+....+..++....... +|++|++||+|+.+ .++.++....... ..+.++.|||++
T Consensus 96 ~l~e~~~~L~~ll~~~~~~~-------------~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~ 160 (175)
T PF00025_consen 96 RLQEAKEELKELLNDPELKD-------------IPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKT 160 (175)
T ss_dssp GHHHHHHHHHHHHTSGGGTT-------------SEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTT
T ss_pred eecccccchhhhcchhhccc-------------ceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccC
Confidence 99999999888887654433 99999999999854 3444555543322 235699999999
Q ss_pred CCC
Q psy1873 155 DDY 157 (157)
Q Consensus 155 ~~~ 157 (157)
|+|
T Consensus 161 g~G 163 (175)
T PF00025_consen 161 GEG 163 (175)
T ss_dssp TBT
T ss_pred CcC
Confidence 987
No 127
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=1e-25 Score=152.77 Aligned_cols=138 Identities=20% Similarity=0.225 Sum_probs=105.8
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||++++.++.+. .+.+|.+... ..+.+++ +.+.+||++|+..+..++..++.+++++++|+|+++++
T Consensus 23 vG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~ 98 (184)
T smart00178 23 LGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS-EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKE 98 (184)
T ss_pred ECCCCCCHHHHHHHHhcCCCc-ccCCccccce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHH
Confidence 699999999999999987764 3456655332 2334443 67899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH------------hCCcEE
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES------------WKAGFV 148 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~ 148 (157)
+++....++..+++...... .|+++|+||+|+.. .++.++......- ....++
T Consensus 99 ~~~~~~~~l~~l~~~~~~~~-------------~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~ 163 (184)
T smart00178 99 RFAESKRELDALLSDEELAT-------------VPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVF 163 (184)
T ss_pred HHHHHHHHHHHHHcChhhcC-------------CCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEE
Confidence 99999888888776433222 99999999999853 3445554433211 123599
Q ss_pred EeccccCCC
Q psy1873 149 EASAKQDDY 157 (157)
Q Consensus 149 e~Sa~~~~~ 157 (157)
+|||++|+|
T Consensus 164 ~~Sa~~~~g 172 (184)
T smart00178 164 MCSVVRRMG 172 (184)
T ss_pred EeecccCCC
Confidence 999999986
No 128
>KOG0070|consensus
Probab=99.93 E-value=1.7e-25 Score=146.63 Aligned_cols=140 Identities=19% Similarity=0.268 Sum_probs=111.6
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
||-.++||||++++|..+++... .||+|... ..+.+. .+.+.+||.+||++++.+|+.|+++.+++|+|.|.+|++
T Consensus 23 lGLD~AGKTTILykLk~~E~vtt-vPTiGfnV-E~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~ 98 (181)
T KOG0070|consen 23 VGLDAAGKTTILYKLKLGEIVTT-VPTIGFNV-ETVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRE 98 (181)
T ss_pred EeccCCCceeeeEeeccCCcccC-CCccccce-eEEEEc--ceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHH
Confidence 68999999999999999888766 89999543 223443 588999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce---ecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM---ISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+.+++..+..++....... .|+++.+||.|++.... ++......-.......+..|+|.+|+|
T Consensus 99 Ri~eak~eL~~~l~~~~l~~-------------~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G 165 (181)
T KOG0070|consen 99 RIEEAKEELHRMLAEPELRN-------------APLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEG 165 (181)
T ss_pred HHHHHHHHHHHHHcCcccCC-------------ceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeecccccccc
Confidence 99999998888887776433 99999999999965433 222222222222345788999999986
No 129
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.92 E-value=3.1e-24 Score=144.61 Aligned_cols=137 Identities=20% Similarity=0.217 Sum_probs=98.8
Q ss_pred CCCCCCChhhhHhhhhccc-------ccccccCCc------cceE-EEEE--EE---CCeEEEEEEEeCCCCccCcCchh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ-------FVDSYDPTI------ENTF-VKTT--RM---NNQDYDLKLVDTAGQDEYSIFPA 61 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~-------~~~~~~~t~------~~~~-~~~~--~~---~~~~~~~~i~D~~g~~~~~~~~~ 61 (157)
||+++||||||+++|++.. +...+.++. +..+ ...+ .+ ++..+.+.+|||+|++++..++.
T Consensus 6 vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 85 (179)
T cd01890 6 IAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFSYEVS 85 (179)
T ss_pred EeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhHHHHH
Confidence 6999999999999998732 222233322 2222 1222 22 66778899999999999999999
Q ss_pred hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH
Q psy1873 62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE 141 (157)
Q Consensus 62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~ 141 (157)
.+++++|++|+|||+++..+++....|... .. .. +|+++|+||+|+.+.+ .......+++
T Consensus 86 ~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~-~~----~~-------------~~iiiv~NK~Dl~~~~--~~~~~~~~~~ 145 (179)
T cd01890 86 RSLAACEGALLLVDATQGVEAQTLANFYLA-LE----NN-------------LEIIPVINKIDLPSAD--PERVKQQIED 145 (179)
T ss_pred HHHHhcCeEEEEEECCCCccHhhHHHHHHH-HH----cC-------------CCEEEEEECCCCCcCC--HHHHHHHHHH
Confidence 999999999999999987776666555422 11 12 8999999999985432 2233456677
Q ss_pred HhCCc---EEEeccccCCC
Q psy1873 142 SWKAG---FVEASAKQDDY 157 (157)
Q Consensus 142 ~~~~~---~~e~Sa~~~~~ 157 (157)
.++++ ++++||++|+|
T Consensus 146 ~~~~~~~~~~~~Sa~~g~g 164 (179)
T cd01890 146 VLGLDPSEAILVSAKTGLG 164 (179)
T ss_pred HhCCCcccEEEeeccCCCC
Confidence 77764 89999999986
No 130
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=1.8e-23 Score=136.01 Aligned_cols=144 Identities=34% Similarity=0.532 Sum_probs=112.1
Q ss_pred CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|+|||||++++.+... .....+|....+............+.+||++|+..+...+..+++.++++++|+|++++
T Consensus 2 iG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 81 (157)
T cd00882 2 VGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDR 81 (157)
T ss_pred CCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCH
Confidence 79999999999999998877 45555665344466666667788999999999998888888899999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHH-HHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDE-GKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+........... .|+++++||+|+.......... ...+....+++++++||+++.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~-------------~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 147 (157)
T cd00882 82 ESFENVKEWLLLILINKEGEN-------------IPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGEN 147 (157)
T ss_pred HHHHHHHHHHHHHHHhhccCC-------------CcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCC
Confidence 999999887544443333333 9999999999986544433322 3445555568999999999875
No 131
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=4.8e-24 Score=148.03 Aligned_cols=143 Identities=33% Similarity=0.426 Sum_probs=112.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|.+..+...+.+|++..+ ..........+.+.+||++|+++++.+++.++.+++++++|||.++.
T Consensus 11 ~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~ 90 (219)
T COG1100 11 LGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLR 90 (219)
T ss_pred EcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 69999999999999999999999999988666 44444444478899999999999999999999999999999999995
Q ss_pred hhH-HHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHh---
Q psy1873 80 KSF-EVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER------------MISYDEGKRLAESW--- 143 (157)
Q Consensus 80 ~s~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~------------~~~~~~~~~~~~~~--- 143 (157)
.++ +....|...+....... .|+++++||+|+...+ ..........+...
T Consensus 91 ~~~~~~~~~~~~~l~~~~~~~--------------~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (219)
T COG1100 91 ESSDELTEEWLEELRELAPDD--------------VPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVA 156 (219)
T ss_pred hhhhHHHHHHHHHHHHhCCCC--------------ceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhc
Confidence 555 45577777776666422 9999999999997653 33344444444333
Q ss_pred CCcEEEeccc--cCCC
Q psy1873 144 KAGFVEASAK--QDDY 157 (157)
Q Consensus 144 ~~~~~e~Sa~--~~~~ 157 (157)
...++++||+ ++.|
T Consensus 157 ~~~~~~~s~~~~~~~~ 172 (219)
T COG1100 157 NPALLETSAKSLTGPN 172 (219)
T ss_pred ccceeEeecccCCCcC
Confidence 2359999999 6653
No 132
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.92 E-value=1.6e-23 Score=137.46 Aligned_cols=142 Identities=24% Similarity=0.400 Sum_probs=112.5
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|.+|+|||||++++....+...+.++++..+ ...+..++..+.+.+||++|+..+..++..+++.++.++.++|+...
T Consensus 7 ~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~ 86 (161)
T TIGR00231 7 VGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVIL 86 (161)
T ss_pred ECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeee
Confidence 69999999999999999887777777777554 55567777778899999999999999999999999999999999887
Q ss_pred -hhHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 -KSFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 -~s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++... .|...+...... . .|+++++||+|+...+ +.......+......+++++||++|+|
T Consensus 87 v~~~~~~~~~~~~~~~~~~~~-~-------------~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~g 151 (161)
T TIGR00231 87 VLDVEEILEKQTKEIIHHAES-N-------------VPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKN 151 (161)
T ss_pred ehhhhhHhHHHHHHHHHhccc-C-------------CcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCC
Confidence 7777665 666666555432 3 8999999999996544 333444444454557899999999986
No 133
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.91 E-value=1.1e-23 Score=140.57 Aligned_cols=138 Identities=19% Similarity=0.197 Sum_probs=91.7
Q ss_pred CCCCCCChhhhHhhhhccccccc-ccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc---------hhhhccCCCEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDS-YDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF---------PAQYSMDIHGY 70 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---------~~~~~~~~~~~ 70 (157)
+|++|||||||+++|.+..+... +..++.......... ..+.+.+|||+|+...... .......+|++
T Consensus 6 ~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~ 83 (168)
T cd01897 6 AGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAV 83 (168)
T ss_pred EcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcE
Confidence 69999999999999998876422 222222111222222 3467899999998432110 00111235889
Q ss_pred EEEEECCChhhH--HHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEE
Q psy1873 71 VLVYSITSHKSF--EVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFV 148 (157)
Q Consensus 71 ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (157)
++|+|.+++.++ +....|+..+..... . .|+++|+||+|+...+.+.. ...+....+.+++
T Consensus 84 l~v~d~~~~~~~~~~~~~~~~~~l~~~~~--~-------------~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~ 146 (168)
T cd01897 84 LFLFDPSETCGYSLEEQLSLFEEIKPLFK--N-------------KPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVL 146 (168)
T ss_pred EEEEeCCcccccchHHHHHHHHHHHhhcC--c-------------CCeEEEEEccccCchhhHHH--HHHhhhhccCceE
Confidence 999999987654 556667776654321 2 99999999999966544432 4556666678999
Q ss_pred EeccccCCC
Q psy1873 149 EASAKQDDY 157 (157)
Q Consensus 149 e~Sa~~~~~ 157 (157)
++||++|+|
T Consensus 147 ~~Sa~~~~g 155 (168)
T cd01897 147 KISTLTEEG 155 (168)
T ss_pred EEEecccCC
Confidence 999999986
No 134
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.91 E-value=1.7e-23 Score=140.30 Aligned_cols=135 Identities=21% Similarity=0.299 Sum_probs=103.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||++++.+..+. .+.+|.+..+ ..+..++ ..+.+||++|+..+...+..+++.++++++|+|+++..
T Consensus 20 ~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~-~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~ 95 (173)
T cd04155 20 LGLDNAGKTTILKQLASEDIS-HITPTQGFNI-KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKK 95 (173)
T ss_pred EccCCCCHHHHHHHHhcCCCc-ccCCCCCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHH
Confidence 699999999999999987654 3456665332 3344444 56899999999999888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC--------cEEEecc
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA--------GFVEASA 152 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~e~Sa 152 (157)
++.....++..+........ +|+++++||+|+.+... ...+.+..++ +++++||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~-------------~p~ivv~nK~D~~~~~~-----~~~i~~~l~~~~~~~~~~~~~~~Sa 157 (173)
T cd04155 96 RLEEAGAELVELLEEEKLAG-------------VPVLVFANKQDLATAAP-----AEEIAEALNLHDLRDRTWHIQACSA 157 (173)
T ss_pred HHHHHHHHHHHHHhChhhcC-------------CCEEEEEECCCCccCCC-----HHHHHHHcCCcccCCCeEEEEEeEC
Confidence 99998888888776544333 99999999999854321 2223333342 4789999
Q ss_pred ccCCC
Q psy1873 153 KQDDY 157 (157)
Q Consensus 153 ~~~~~ 157 (157)
++|+|
T Consensus 158 ~~~~g 162 (173)
T cd04155 158 KTGEG 162 (173)
T ss_pred CCCCC
Confidence 99987
No 135
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.91 E-value=1.4e-23 Score=140.15 Aligned_cols=143 Identities=18% Similarity=0.168 Sum_probs=96.5
Q ss_pred CCCCCCChhhhHhhhhccccc-ccccCCccceEEEEEEECCeEEEEEEEeCCCCc----cCcCchhhhc---cCCCEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQD----EYSIFPAQYS---MDIHGYVL 72 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~---~~~~~~il 72 (157)
||.+|||||||++++.+.... ..+..+........+..++. ..+.+||+||.. ....+...++ +.+|++++
T Consensus 6 vG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~ 84 (170)
T cd01898 6 VGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLH 84 (170)
T ss_pred ECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEE
Confidence 699999999999999876542 11111211111122233332 468999999964 2223444443 45999999
Q ss_pred EEECCCh-hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-hCCcEEEe
Q psy1873 73 VYSITSH-KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES-WKAGFVEA 150 (157)
Q Consensus 73 v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~e~ 150 (157)
|+|++++ ++++.+..|...+...... ....|+++|+||+|+.+...+. .....+... .+.+++++
T Consensus 85 v~D~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~ 151 (170)
T cd01898 85 VIDLSGDDDPVEDYKTIRNELELYNPE------------LLEKPRIVVLNKIDLLDEEELF-ELLKELLKELWGKPVFPI 151 (170)
T ss_pred EEecCCCCCHHHHHHHHHHHHHHhCcc------------ccccccEEEEEchhcCCchhhH-HHHHHHHhhCCCCCEEEE
Confidence 9999999 7999998888887665321 1128999999999986654443 334445555 36899999
Q ss_pred ccccCCC
Q psy1873 151 SAKQDDY 157 (157)
Q Consensus 151 Sa~~~~~ 157 (157)
||+++.|
T Consensus 152 Sa~~~~g 158 (170)
T cd01898 152 SALTGEG 158 (170)
T ss_pred ecCCCCC
Confidence 9999976
No 136
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.91 E-value=1.7e-24 Score=140.85 Aligned_cols=121 Identities=23% Similarity=0.237 Sum_probs=88.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCc-----cCcCchhhhccCCCEEEEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQD-----EYSIFPAQYSMDIHGYVLVYS 75 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~~~~ilv~d 75 (157)
||++|||||||+++|.+..+. +.+|++..+ .. .+||++|+. .+..+.+ .++++|++|+|||
T Consensus 6 iG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~------~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d 71 (142)
T TIGR02528 6 IGSVGCGKTTLTQALQGEEIL--YKKTQAVEY------ND-----GAIDTPGEYVENRRLYSALIV-TAADADVIALVQS 71 (142)
T ss_pred ECCCCCCHHHHHHHHcCCccc--cccceeEEE------cC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEec
Confidence 699999999999999987652 334443222 11 579999983 2333333 4789999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEecccc
Q psy1873 76 ITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVEASAKQ 154 (157)
Q Consensus 76 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~ 154 (157)
++++.++.. ..|... . . .|+++|+||+|+.+ +....+++..+++..+. +++++||++
T Consensus 72 ~~~~~s~~~-~~~~~~----~---~-------------~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 129 (142)
T TIGR02528 72 ATDPESRFP-PGFASI----F---V-------------KPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVD 129 (142)
T ss_pred CCCCCcCCC-hhHHHh----c---c-------------CCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCC
Confidence 999998755 233221 1 1 58999999999864 34456677888888876 899999999
Q ss_pred CCC
Q psy1873 155 DDY 157 (157)
Q Consensus 155 ~~~ 157 (157)
|+|
T Consensus 130 ~~g 132 (142)
T TIGR02528 130 EQG 132 (142)
T ss_pred CCC
Confidence 986
No 137
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=5.2e-24 Score=145.47 Aligned_cols=139 Identities=21% Similarity=0.206 Sum_probs=96.4
Q ss_pred CCCCCCChhhhHhhhhc--ccccccc------------cCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVD--GQFVDSY------------DPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM 65 (157)
Q Consensus 1 vG~~~~GKssli~~~~~--~~~~~~~------------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 65 (157)
+|.++||||||+++|+. +.+...+ ..+.+..+ .....++...+.+.+||++|+++|...+..+++
T Consensus 8 vG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~ 87 (194)
T cd01891 8 IAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVERVLS 87 (194)
T ss_pred EecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHHHHHH
Confidence 69999999999999997 4444332 12233222 333445556678999999999999999999999
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHH---
Q psy1873 66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM-ISYDEGKRLAE--- 141 (157)
Q Consensus 66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~-~~~~~~~~~~~--- 141 (157)
.+|++++|||+++.. +.....++..+.. .. +|+++++||+|+...+. ...++...+..
T Consensus 88 ~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~-------------~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 149 (194)
T cd01891 88 MVDGVLLLVDASEGP-MPQTRFVLKKALE----LG-------------LKPIVVINKIDRPDARPEEVVDEVFDLFIELG 149 (194)
T ss_pred hcCEEEEEEECCCCc-cHHHHHHHHHHHH----cC-------------CCEEEEEECCCCCCCCHHHHHHHHHHHHHHhC
Confidence 999999999998742 2333333333322 12 89999999999864322 12334444442
Q ss_pred ----HhCCcEEEeccccCCC
Q psy1873 142 ----SWKAGFVEASAKQDDY 157 (157)
Q Consensus 142 ----~~~~~~~e~Sa~~~~~ 157 (157)
..+++++++||++|.|
T Consensus 150 ~~~~~~~~~iv~~Sa~~g~~ 169 (194)
T cd01891 150 ATEEQLDFPVLYASAKNGWA 169 (194)
T ss_pred CccccCccCEEEeehhcccc
Confidence 2367999999999975
No 138
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=5.9e-23 Score=135.48 Aligned_cols=134 Identities=21% Similarity=0.225 Sum_probs=96.7
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcCc------hhhhcc--CCCEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIF------PAQYSM--DIHGYV 71 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~~--~~~~~i 71 (157)
+|.+|||||||++++++..+.....+++. ......+.+++ ..+.+|||||+..+... +..++. .+|+++
T Consensus 2 ~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi 79 (158)
T cd01879 2 VGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIV 79 (158)
T ss_pred CCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEE
Confidence 69999999999999998765433333333 33345566665 46799999999877653 455564 899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873 72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS 151 (157)
Q Consensus 72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 151 (157)
+|+|.++++... .|+..+... . +|+++++||+|+.+...+... ...++..++++++++|
T Consensus 80 ~v~d~~~~~~~~---~~~~~~~~~----~-------------~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iS 138 (158)
T cd01879 80 NVVDATNLERNL---YLTLQLLEL----G-------------LPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTS 138 (158)
T ss_pred EEeeCCcchhHH---HHHHHHHHc----C-------------CCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEE
Confidence 999998865432 333333221 2 899999999999765554433 4677788899999999
Q ss_pred cccCCC
Q psy1873 152 AKQDDY 157 (157)
Q Consensus 152 a~~~~~ 157 (157)
|++|+|
T Consensus 139 a~~~~~ 144 (158)
T cd01879 139 ARKGEG 144 (158)
T ss_pred ccCCCC
Confidence 999976
No 139
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.91 E-value=1.9e-23 Score=132.00 Aligned_cols=112 Identities=29% Similarity=0.444 Sum_probs=83.3
Q ss_pred CCCCCCChhhhHhhhhccccc--ccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSIT 77 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~ 77 (157)
+|++|||||||+++|++..+. ..+.++.+..+ .....+......+++||++|++.+...+..++..+|++|+|||++
T Consensus 5 ~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s 84 (119)
T PF08477_consen 5 LGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLS 84 (119)
T ss_dssp ECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECC
T ss_pred ECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEEEcCC
Confidence 699999999999999988776 22233333333 456667777777999999999999988888899999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCC
Q psy1873 78 SHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKD 124 (157)
Q Consensus 78 ~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~D 124 (157)
++++++.+.+++..+....... ..+|++|||||.|
T Consensus 85 ~~~s~~~~~~~~~~l~~~~~~~------------~~~piilv~nK~D 119 (119)
T PF08477_consen 85 DPESLEYLSQLLKWLKNIRKRD------------KNIPIILVGNKSD 119 (119)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHS------------SCSEEEEEEE-TC
T ss_pred ChHHHHHHHHHHHHHHHHHccC------------CCCCEEEEEeccC
Confidence 9999999866544444333210 1299999999998
No 140
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.90 E-value=2.5e-23 Score=138.00 Aligned_cols=135 Identities=19% Similarity=0.152 Sum_probs=89.3
Q ss_pred CCCCCCChhhhHhhhhcc---cccccccC--CccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDG---QFVDSYDP--TIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYS 75 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~---~~~~~~~~--t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d 75 (157)
+|++|||||||+++|++. .+...+.+ |+... ...+.+.+ ...+.+||++|++++......++.++|++++|+|
T Consensus 6 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d 83 (164)
T cd04171 6 AGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLG-FAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVA 83 (164)
T ss_pred EecCCCCHHHHHHHHhCcccccchhhhccCceEEee-eEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEE
Confidence 699999999999999863 23222222 22222 23334432 3578999999999887666677889999999999
Q ss_pred CCC---hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce--ecHHHHHHHHHH---hCCcE
Q psy1873 76 ITS---HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM--ISYDEGKRLAES---WKAGF 147 (157)
Q Consensus 76 ~~~---~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~ 147 (157)
+++ +++.+.+. . ..... . .|+++++||+|+..... ....+...+.+. .+.++
T Consensus 84 ~~~~~~~~~~~~~~----~-~~~~~--~-------------~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (164)
T cd04171 84 ADEGIMPQTREHLE----I-LELLG--I-------------KRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPI 143 (164)
T ss_pred CCCCccHhHHHHHH----H-HHHhC--C-------------CcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcE
Confidence 987 34443332 1 11111 1 48999999999965321 122334444443 45799
Q ss_pred EEeccccCCC
Q psy1873 148 VEASAKQDDY 157 (157)
Q Consensus 148 ~e~Sa~~~~~ 157 (157)
+++||++|+|
T Consensus 144 ~~~Sa~~~~~ 153 (164)
T cd04171 144 FPVSAVTGEG 153 (164)
T ss_pred EEEeCCCCcC
Confidence 9999999986
No 141
>KOG0075|consensus
Probab=99.90 E-value=1.4e-24 Score=137.11 Aligned_cols=139 Identities=22% Similarity=0.330 Sum_probs=111.8
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
||..++|||||+|....+.+...-.||+|... ..++...+.+.+||.+||++|+.+|..|.+++++++.|.|..+++
T Consensus 26 vGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm---rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~ 102 (186)
T KOG0075|consen 26 VGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPD 102 (186)
T ss_pred EeeccCCcceEEEEEeeccchhhhccccccee---EEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcc
Confidence 68999999999999999999888889988432 234445678899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHH-----HHHHHHHhCCcEEEeccccC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDE-----GKRLAESWKAGFVEASAKQD 155 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~e~Sa~~~ 155 (157)
.+...+..+..++....-.. +|++|.|||.|+++. .+... +..-.....+.+|-+|||+.
T Consensus 103 k~~~sr~EL~~LL~k~~l~g-------------ip~LVLGnK~d~~~A--L~~~~li~rmgL~sitdREvcC~siScke~ 167 (186)
T KOG0075|consen 103 KLEASRSELHDLLDKPSLTG-------------IPLLVLGNKIDLPGA--LSKIALIERMGLSSITDREVCCFSISCKEK 167 (186)
T ss_pred cchhhHHHHHHHhcchhhcC-------------CcEEEecccccCccc--ccHHHHHHHhCccccccceEEEEEEEEcCC
Confidence 99999988888888877665 999999999998642 22221 11111222357899999988
Q ss_pred CC
Q psy1873 156 DY 157 (157)
Q Consensus 156 ~~ 157 (157)
.|
T Consensus 168 ~N 169 (186)
T KOG0075|consen 168 VN 169 (186)
T ss_pred cc
Confidence 75
No 142
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=4.6e-23 Score=150.66 Aligned_cols=144 Identities=17% Similarity=0.112 Sum_probs=103.1
Q ss_pred CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCcc----CcCchhh---hccCCCEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDE----YSIFPAQ---YSMDIHGYVL 72 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~---~~~~~~~~il 72 (157)
||.||||||||++++...+. ...|..|+.......+.+.+ ...+.+||+||..+ ...+... .++.++++++
T Consensus 164 VG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ 242 (335)
T PRK12299 164 VGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLH 242 (335)
T ss_pred EcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEE
Confidence 69999999999999997654 34444444433333444422 24578999999642 2234444 3456899999
Q ss_pred EEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEecc
Q psy1873 73 VYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152 (157)
Q Consensus 73 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 152 (157)
|+|+++.++++.+..|..++...... +...|++||+||+|+.+...+..++...++...+++++++||
T Consensus 243 ViD~s~~~s~e~~~~~~~EL~~~~~~------------L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSA 310 (335)
T PRK12299 243 LVDIEAVDPVEDYKTIRNELEKYSPE------------LADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISA 310 (335)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHhhhh------------cccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEc
Confidence 99999988899998888888765432 122899999999999765544444555666667789999999
Q ss_pred ccCCC
Q psy1873 153 KQDDY 157 (157)
Q Consensus 153 ~~~~~ 157 (157)
++++|
T Consensus 311 ktg~G 315 (335)
T PRK12299 311 VTGEG 315 (335)
T ss_pred CCCCC
Confidence 99986
No 143
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=1e-22 Score=136.59 Aligned_cols=149 Identities=20% Similarity=0.164 Sum_probs=98.1
Q ss_pred CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCcc----CcCch---hhhccCCCEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDE----YSIFP---AQYSMDIHGYVL 72 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~---~~~~~~~~~~il 72 (157)
+|++|||||||++++.+... ...+..++.......+.+++ ...+.+||+||... ...+. ...++++|++++
T Consensus 2 iG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 2 VGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 79999999999999998764 23333332222233344441 35579999999632 22332 234678999999
Q ss_pred EEECCCh------hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc
Q psy1873 73 VYSITSH------KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAG 146 (157)
Q Consensus 73 v~d~~~~------~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 146 (157)
|+|.+++ .+++.+..|...+........ . ......|+++|+||+|+..............+...+.+
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 153 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETI-L------GLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAE 153 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhH-H------HHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCC
Confidence 9999998 578888777777765432100 0 00012999999999999765444433334455555678
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
++++||+++.|
T Consensus 154 ~~~~Sa~~~~g 164 (176)
T cd01881 154 VVPISAKTEEG 164 (176)
T ss_pred EEEEehhhhcC
Confidence 99999999876
No 144
>KOG1673|consensus
Probab=99.89 E-value=3.8e-23 Score=131.86 Aligned_cols=142 Identities=20% Similarity=0.378 Sum_probs=121.6
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|+++.|||||+-++.++.+...+..+.|..+ .+++.+.+..+.+.|||.+|++++..+.+...+++-+++++||++.+
T Consensus 26 lGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r 105 (205)
T KOG1673|consen 26 LGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRR 105 (205)
T ss_pred ecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCch
Confidence 69999999999999999999888888889666 88889999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC-----CceecHHHHHHHHHHhCCcEEEecccc
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM-----ERMISYDEGKRLAESWKAGFVEASAKQ 154 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 154 (157)
+.++.+..|+.+.......- +| ++||+|.|+.- ...--..+++++++..+++.|.||+..
T Consensus 106 ~TLnSi~~WY~QAr~~NktA--------------iP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~ 170 (205)
T KOG1673|consen 106 STLNSIKEWYRQARGLNKTA--------------IP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSH 170 (205)
T ss_pred HHHHHHHHHHHHHhccCCcc--------------ce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccc
Confidence 99999999999987665432 44 67899999631 111223558889999999999999976
Q ss_pred CCC
Q psy1873 155 DDY 157 (157)
Q Consensus 155 ~~~ 157 (157)
..|
T Consensus 171 sIN 173 (205)
T KOG1673|consen 171 SIN 173 (205)
T ss_pred ccc
Confidence 654
No 145
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.88 E-value=1e-21 Score=143.41 Aligned_cols=143 Identities=18% Similarity=0.171 Sum_probs=100.7
Q ss_pred CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCccC----cCchhhhcc---CCCEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY----SIFPAQYSM---DIHGYVL 72 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~~~~---~~~~~il 72 (157)
||.||||||||++++...+. ...|..|+.......+.+++ ...+.+||+||.... ..+...+++ .++++++
T Consensus 163 vG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~ 241 (329)
T TIGR02729 163 VGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLH 241 (329)
T ss_pred EcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEE
Confidence 69999999999999998654 33444443333333344443 256799999997432 234444444 6899999
Q ss_pred EEECCCh---hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEE
Q psy1873 73 VYSITSH---KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVE 149 (157)
Q Consensus 73 v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e 149 (157)
|+|+++. ++++.+..|..++...... +...|++||+||+|+..... ..+..+.+++.++.++++
T Consensus 242 VvD~s~~~~~~~~e~l~~l~~EL~~~~~~------------l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~ 308 (329)
T TIGR02729 242 LIDISPLDGRDPIEDYEIIRNELKKYSPE------------LAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFP 308 (329)
T ss_pred EEcCccccccCHHHHHHHHHHHHHHhhhh------------hccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEE
Confidence 9999987 6788888777777655321 12389999999999965433 234456677777889999
Q ss_pred eccccCCC
Q psy1873 150 ASAKQDDY 157 (157)
Q Consensus 150 ~Sa~~~~~ 157 (157)
+||++++|
T Consensus 309 iSAktg~G 316 (329)
T TIGR02729 309 ISALTGEG 316 (329)
T ss_pred EEccCCcC
Confidence 99999986
No 146
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.88 E-value=3.8e-22 Score=137.23 Aligned_cols=136 Identities=20% Similarity=0.205 Sum_probs=91.9
Q ss_pred CCCCCCChhhhHhhhhcccccc--cccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC--chh------hhccCCCEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVD--SYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI--FPA------QYSMDIHGY 70 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--~~~------~~~~~~~~~ 70 (157)
+|++|||||||++++++..+.. .+.+|... ....+..++. ..+.+||++|..+... +.. ..+..+|++
T Consensus 47 iG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~i 124 (204)
T cd01878 47 VGYTNAGKSTLFNALTGADVYAEDQLFATLDP-TTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLL 124 (204)
T ss_pred ECCCCCCHHHHHHHHhcchhccCCccceeccc-eeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeE
Confidence 6999999999999999876432 22333332 2333344443 2688999999743211 111 125689999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEe
Q psy1873 71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEA 150 (157)
Q Consensus 71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 150 (157)
++|+|++++.+++.+..|...+.... ... .|+++|+||+|+.+..... ......+.+++++
T Consensus 125 i~v~D~~~~~~~~~~~~~~~~l~~~~-~~~-------------~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~ 185 (204)
T cd01878 125 LHVVDASDPDYEEQIETVEKVLKELG-AED-------------IPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFI 185 (204)
T ss_pred EEEEECCCCChhhHHHHHHHHHHHcC-cCC-------------CCEEEEEEccccCChHHHH-----HHhhcCCCceEEE
Confidence 99999999988887766655443332 222 8999999999986543321 3344556799999
Q ss_pred ccccCCC
Q psy1873 151 SAKQDDY 157 (157)
Q Consensus 151 Sa~~~~~ 157 (157)
||++|.|
T Consensus 186 Sa~~~~g 192 (204)
T cd01878 186 SAKTGEG 192 (204)
T ss_pred EcCCCCC
Confidence 9999986
No 147
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.88 E-value=5.8e-22 Score=132.05 Aligned_cols=139 Identities=17% Similarity=0.144 Sum_probs=90.7
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEEC-CeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMN-NQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS 78 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~ 78 (157)
+|++|||||||+++|+++.+...+.++..... ...+..+ +....+.+|||+|+..+..++...+..+|++++|+|+++
T Consensus 6 iG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~ 85 (168)
T cd01887 6 MGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADD 85 (168)
T ss_pred EecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCC
Confidence 69999999999999998877654333332222 2222332 135678999999999998888889999999999999998
Q ss_pred hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecH-HHHHHHHH----Hh--CCcEEEec
Q psy1873 79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISY-DEGKRLAE----SW--KAGFVEAS 151 (157)
Q Consensus 79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~-~~~~~~~~----~~--~~~~~e~S 151 (157)
...-+.. ..+..+. . .. .|+++|+||+|+........ .....+.. .. .++++++|
T Consensus 86 ~~~~~~~-~~~~~~~-~---~~-------------~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (168)
T cd01887 86 GVMPQTI-EAIKLAK-A---AN-------------VPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTS 147 (168)
T ss_pred CccHHHH-HHHHHHH-H---cC-------------CCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEee
Confidence 4321111 1111121 1 12 89999999999864321111 11111111 11 36899999
Q ss_pred cccCCC
Q psy1873 152 AKQDDY 157 (157)
Q Consensus 152 a~~~~~ 157 (157)
|++|+|
T Consensus 148 a~~~~g 153 (168)
T cd01887 148 AKTGEG 153 (168)
T ss_pred cccCCC
Confidence 999986
No 148
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.88 E-value=1.2e-21 Score=147.99 Aligned_cols=128 Identities=26% Similarity=0.197 Sum_probs=96.1
Q ss_pred CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCch--------hhhccCCCEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP--------AQYSMDIHGY 70 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~~~~~~~ 70 (157)
+|++|||||||+|+|++... ...+..|+.+.+...+.+++. .+.+|||+|...+.... ..+++.+|++
T Consensus 209 vG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~--~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~i 286 (442)
T TIGR00450 209 VGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGI--LIKLLDTAGIREHADFVERLGIEKSFKAIKQADLV 286 (442)
T ss_pred ECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCE--EEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEE
Confidence 69999999999999998653 455555555555677777774 46899999987655432 3577899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEe
Q psy1873 71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEA 150 (157)
Q Consensus 71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 150 (157)
++|||++++.+++.. |+..+.. .. .|+++|+||+|+... +...+++.++.+++++
T Consensus 287 l~V~D~s~~~s~~~~--~l~~~~~----~~-------------~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~v 341 (442)
T TIGR00450 287 IYVLDASQPLTKDDF--LIIDLNK----SK-------------KPFILVLNKIDLKIN------SLEFFVSSKVLNSSNL 341 (442)
T ss_pred EEEEECCCCCChhHH--HHHHHhh----CC-------------CCEEEEEECccCCCc------chhhhhhhcCCceEEE
Confidence 999999998887765 5554432 12 899999999998543 2244567778899999
Q ss_pred ccccC
Q psy1873 151 SAKQD 155 (157)
Q Consensus 151 Sa~~~ 155 (157)
||+++
T Consensus 342 Sak~~ 346 (442)
T TIGR00450 342 SAKQL 346 (442)
T ss_pred EEecC
Confidence 99983
No 149
>KOG3883|consensus
Probab=99.88 E-value=2.8e-21 Score=123.07 Aligned_cols=142 Identities=30% Similarity=0.425 Sum_probs=117.0
Q ss_pred CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEEC-CeEEEEEEEeCCCCccC-cCchhhhccCCCEEEEEEEC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMN-NQDYDLKLVDTAGQDEY-SIFPAQYSMDIHGYVLVYSI 76 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~~~ilv~d~ 76 (157)
.|-.+||||+|+.+++-+.. ..++.+|+.+.|...+.-+ +-.-.++++||.|-..+ ..+...|+.-+|+++||||.
T Consensus 15 cG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~ 94 (198)
T KOG3883|consen 15 CGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSP 94 (198)
T ss_pred ECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceEEEEecC
Confidence 37889999999999986654 3467899999886655543 33557899999997766 56888999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccC
Q psy1873 77 TSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155 (157)
Q Consensus 77 ~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 155 (157)
.|++||+.+.-.-+.|.......+ +|++|.|||+|+.+.+.+..+-+..||+.-.+..+|++|.+.
T Consensus 95 ~d~eSf~rv~llKk~Idk~KdKKE-------------vpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR 160 (198)
T KOG3883|consen 95 MDPESFQRVELLKKEIDKHKDKKE-------------VPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDR 160 (198)
T ss_pred CCHHHHHHHHHHHHHHhhcccccc-------------ccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccc
Confidence 999999887655555555554444 999999999999999999999999999999999999999864
No 150
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=5.2e-21 Score=125.90 Aligned_cols=132 Identities=18% Similarity=0.103 Sum_probs=90.1
Q ss_pred CCCCCCChhhhHhhhhccc--ccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC--------chhhhccCCCEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ--FVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI--------FPAQYSMDIHGY 70 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~~~~ 70 (157)
+|.+|||||||++++++.. +.....++...........++ ..+.+||+||...+.. .....+..+|++
T Consensus 3 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 3 VGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred cCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 6999999999999999765 233444443333444445555 5688999999987654 233567889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEE
Q psy1873 71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVE 149 (157)
Q Consensus 71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e 149 (157)
++++|..++.+.... ++.+++... . .|+++|+||+|+.+.... .......++ ++++
T Consensus 81 i~v~d~~~~~~~~~~--~~~~~~~~~---~-------------~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~ 137 (157)
T cd01894 81 LFVVDGREGLTPADE--EIAKYLRKS---K-------------KPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIP 137 (157)
T ss_pred EEEEeccccCCccHH--HHHHHHHhc---C-------------CCEEEEEECcccCChHHH-----HHHHHhcCCCCeEE
Confidence 999999876544332 222232222 1 899999999998654322 222334566 8999
Q ss_pred eccccCCC
Q psy1873 150 ASAKQDDY 157 (157)
Q Consensus 150 ~Sa~~~~~ 157 (157)
+||++|.|
T Consensus 138 ~Sa~~~~g 145 (157)
T cd01894 138 ISAEHGRG 145 (157)
T ss_pred EecccCCC
Confidence 99999976
No 151
>PRK04213 GTP-binding protein; Provisional
Probab=99.87 E-value=4.3e-22 Score=136.64 Aligned_cols=133 Identities=22% Similarity=0.221 Sum_probs=83.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCC-----------CccCcCchhhhcc-C--
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAG-----------QDEYSIFPAQYSM-D-- 66 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~~~-~-- 66 (157)
+|++|||||||+++|.+..+...+.+++... ...+.+. .+.+||++| ++.++.++..++. .
T Consensus 15 ~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (201)
T PRK04213 15 VGRSNVGKSTLVRELTGKKVRVGKRPGVTRK-PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNAD 89 (201)
T ss_pred ECCCCCCHHHHHHHHhCCCCccCCCCceeeC-ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhh
Confidence 6999999999999999887655444443311 2222222 478999999 4556555555554 3
Q ss_pred -CCEEEEEEECCChhhHHHHHHHH--------HHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHH
Q psy1873 67 -IHGYVLVYSITSHKSFEVVQILY--------DKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGK 137 (157)
Q Consensus 67 -~~~~ilv~d~~~~~s~~~~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~ 137 (157)
++++++|.|.++...+ ...|. ..+........ +|+++|+||+|+.+.. .+...
T Consensus 90 ~~~~vi~v~d~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~-------------~p~iiv~NK~Dl~~~~---~~~~~ 151 (201)
T PRK04213 90 RILAAVLVVDGKSFIEI--IERWEGRGEIPIDVEMFDFLRELG-------------IPPIVAVNKMDKIKNR---DEVLD 151 (201)
T ss_pred hheEEEEEEeCcccccc--ccccccCCCcHHHHHHHHHHHHcC-------------CCeEEEEECccccCcH---HHHHH
Confidence 4566677776543221 01221 11111111112 9999999999986543 34566
Q ss_pred HHHHHhCC---------cEEEeccccCCC
Q psy1873 138 RLAESWKA---------GFVEASAKQDDY 157 (157)
Q Consensus 138 ~~~~~~~~---------~~~e~Sa~~~~~ 157 (157)
.+++.+++ +++++||++| |
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~SA~~g-g 179 (201)
T PRK04213 152 EIAERLGLYPPWRQWQDIIAPISAKKG-G 179 (201)
T ss_pred HHHHHhcCCccccccCCcEEEEecccC-C
Confidence 67777775 4799999998 6
No 152
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=1.7e-21 Score=148.80 Aligned_cols=137 Identities=23% Similarity=0.144 Sum_probs=92.8
Q ss_pred CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccC----------cCch-hhhccCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY----------SIFP-AQYSMDI 67 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----------~~~~-~~~~~~~ 67 (157)
||.+|||||||+++|++..+ ......|+.+.....+.+++.. +.+|||+|..+. ..+. ..+++.+
T Consensus 217 iG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~a 294 (472)
T PRK03003 217 VGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAA 294 (472)
T ss_pred ECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHHHHHHhcC
Confidence 69999999999999998765 3344444445556666777755 578999996322 2222 2357899
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCcee--cHHHHH-HHHHHhC
Q psy1873 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMI--SYDEGK-RLAESWK 144 (157)
Q Consensus 68 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~--~~~~~~-~~~~~~~ 144 (157)
|++++|+|++++.+++.+. ++..+.. .. .|++||+||+|+.+.... ...+.. .+.....
T Consensus 295 d~vilV~Da~~~~s~~~~~-~~~~~~~----~~-------------~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~ 356 (472)
T PRK03003 295 EVAVVLIDASEPISEQDQR-VLSMVIE----AG-------------RALVLAFNKWDLVDEDRRYYLEREIDRELAQVPW 356 (472)
T ss_pred CEEEEEEeCCCCCCHHHHH-HHHHHHH----cC-------------CCEEEEEECcccCChhHHHHHHHHHHHhcccCCC
Confidence 9999999999998887764 3333332 12 899999999999642211 111121 2222234
Q ss_pred CcEEEeccccCCC
Q psy1873 145 AGFVEASAKQDDY 157 (157)
Q Consensus 145 ~~~~e~Sa~~~~~ 157 (157)
++++++||++|.|
T Consensus 357 ~~~~~~SAk~g~g 369 (472)
T PRK03003 357 APRVNISAKTGRA 369 (472)
T ss_pred CCEEEEECCCCCC
Confidence 6899999999986
No 153
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.86 E-value=2.7e-21 Score=132.92 Aligned_cols=116 Identities=19% Similarity=0.284 Sum_probs=88.1
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCC-CEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI-HGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-~~~ilv~d~~~~ 79 (157)
+|++|||||+|+++|..+.+...+.++............++...+++||+||+.+++..+..+++.+ +++|+|+|.++.
T Consensus 6 ~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~ 85 (203)
T cd04105 6 LGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATF 85 (203)
T ss_pred EcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccc
Confidence 6999999999999999988766654442221122222224456789999999999998888899998 999999999998
Q ss_pred -hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q psy1873 80 -KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM 127 (157)
Q Consensus 80 -~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~ 127 (157)
+++..+..|+..++...... ...+|++|++||+|+..
T Consensus 86 ~~~~~~~~~~l~~il~~~~~~-----------~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 86 QKNLKDVAEFLYDILTDLEKV-----------KNKIPVLIACNKQDLFT 123 (203)
T ss_pred hhHHHHHHHHHHHHHHHHhhc-----------cCCCCEEEEecchhhcc
Confidence 78888888877776543211 12299999999999864
No 154
>PRK15494 era GTPase Era; Provisional
Probab=99.86 E-value=1e-20 Score=138.91 Aligned_cols=134 Identities=16% Similarity=0.114 Sum_probs=89.2
Q ss_pred CCCCCCChhhhHhhhhcccccc--cccCCccceEEEEEEECCeEEEEEEEeCCCCcc-CcCchh-------hhccCCCEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVD--SYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDE-YSIFPA-------QYSMDIHGY 70 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~-------~~~~~~~~~ 70 (157)
+|.+|||||||+|+|++.++.. ....|+.......+..++ ..+.+|||||+.. +..+.. ..+.++|++
T Consensus 58 vG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvi 135 (339)
T PRK15494 58 IGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLV 135 (339)
T ss_pred EcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEE
Confidence 6999999999999999887642 222222333344555555 4579999999854 333322 236789999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CcEE
Q psy1873 71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK--AGFV 148 (157)
Q Consensus 71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~ 148 (157)
++|+|.++ ++..+..++...+... . .|.++|+||+|+.+. ...+...++...+ ..++
T Consensus 136 l~VvD~~~--s~~~~~~~il~~l~~~---~-------------~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~ 194 (339)
T PRK15494 136 LLIIDSLK--SFDDITHNILDKLRSL---N-------------IVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLF 194 (339)
T ss_pred EEEEECCC--CCCHHHHHHHHHHHhc---C-------------CCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEE
Confidence 99999654 4555544433332222 1 677889999998543 2345666665554 5899
Q ss_pred EeccccCCC
Q psy1873 149 EASAKQDDY 157 (157)
Q Consensus 149 e~Sa~~~~~ 157 (157)
++||++|+|
T Consensus 195 ~iSAktg~g 203 (339)
T PRK15494 195 PISALSGKN 203 (339)
T ss_pred EEeccCccC
Confidence 999999986
No 155
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.86 E-value=3.7e-21 Score=141.65 Aligned_cols=135 Identities=21% Similarity=0.183 Sum_probs=90.6
Q ss_pred CCCCCCChhhhHhhhhcccccc-cccCCccceEEEEEEECCeEEEEEEEeCCCCcc---------CcCchhhhccCCCEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVD-SYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDE---------YSIFPAQYSMDIHGY 70 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~~~~~~ 70 (157)
+|.+|||||||+|+|++..+.. ....++.+.....+.+++. ..+.+|||+|..+ |...+ ..+.++|++
T Consensus 195 vG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~~~ADli 272 (351)
T TIGR03156 195 VGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EEVREADLL 272 (351)
T ss_pred ECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HHHHhCCEE
Confidence 6999999999999999876532 2323333334555566332 3678999999732 21111 247789999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEe
Q psy1873 71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEA 150 (157)
Q Consensus 71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 150 (157)
++|+|++++.+.+.+..|...+ ....... .|+++|+||+|+.+...+ .... ....+++++
T Consensus 273 l~VvD~s~~~~~~~~~~~~~~L-~~l~~~~-------------~piIlV~NK~Dl~~~~~v-----~~~~-~~~~~~i~i 332 (351)
T TIGR03156 273 LHVVDASDPDREEQIEAVEKVL-EELGAED-------------IPQLLVYNKIDLLDEPRI-----ERLE-EGYPEAVFV 332 (351)
T ss_pred EEEEECCCCchHHHHHHHHHHH-HHhccCC-------------CCEEEEEEeecCCChHhH-----HHHH-hCCCCEEEE
Confidence 9999999998888776554443 3332222 899999999998643222 1111 123468999
Q ss_pred ccccCCC
Q psy1873 151 SAKQDDY 157 (157)
Q Consensus 151 Sa~~~~~ 157 (157)
||++|+|
T Consensus 333 SAktg~G 339 (351)
T TIGR03156 333 SAKTGEG 339 (351)
T ss_pred EccCCCC
Confidence 9999986
No 156
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.86 E-value=1.2e-20 Score=135.02 Aligned_cols=135 Identities=19% Similarity=0.162 Sum_probs=90.4
Q ss_pred CCCCCCChhhhHhhhhccccc--ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC-c-------hhhhccCCCEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI-F-------PAQYSMDIHGY 70 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~-------~~~~~~~~~~~ 70 (157)
||.+|||||||+|+|++.++. .....|+..........++ ..+.+|||||...... + ....+.++|++
T Consensus 6 iG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvv 83 (270)
T TIGR00436 6 LGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLI 83 (270)
T ss_pred ECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEE
Confidence 699999999999999988753 3333454443333222233 4588999999764321 1 23457899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEE
Q psy1873 71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVE 149 (157)
Q Consensus 71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e 149 (157)
++|+|.++..+.+ ..++ ..+... . .|+++|+||+|+...... ......++...+. ++++
T Consensus 84 l~VvD~~~~~~~~--~~i~-~~l~~~---~-------------~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~ 143 (270)
T TIGR00436 84 LFVVDSDQWNGDG--EFVL-TKLQNL---K-------------RPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVP 143 (270)
T ss_pred EEEEECCCCCchH--HHHH-HHHHhc---C-------------CCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEE
Confidence 9999999877664 2222 222221 2 899999999998643222 2344555555555 8999
Q ss_pred eccccCCC
Q psy1873 150 ASAKQDDY 157 (157)
Q Consensus 150 ~Sa~~~~~ 157 (157)
+||++|+|
T Consensus 144 iSA~~g~g 151 (270)
T TIGR00436 144 ISALTGDN 151 (270)
T ss_pred EecCCCCC
Confidence 99999986
No 157
>KOG0071|consensus
Probab=99.86 E-value=1.5e-21 Score=122.60 Aligned_cols=138 Identities=17% Similarity=0.225 Sum_probs=105.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|..++||||++++++-++.. ...||+|... . .+..+.+.+.+||.+||+..+++|..|+.+..++|+|.|..+++
T Consensus 23 lGLd~aGKTtiLyKLkl~~~~-~~ipTvGFnv-e--tVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~d 98 (180)
T KOG0071|consen 23 LGLDAAGKTTILYKLKLGQSV-TTIPTVGFNV-E--TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRD 98 (180)
T ss_pred EecccCCceehhhHHhcCCCc-ccccccceeE-E--EEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchh
Confidence 588999999999999876554 3457777432 2 33446688999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEeccccC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA-----ESWKAGFVEASAKQD 155 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~ 155 (157)
.+++++..+-.++.... ++..|++|.+||.|++..+. +.+...+. +....-...+||.+|
T Consensus 99 r~eeAr~ELh~ii~~~e-------------m~~~~~LvlANkQDlp~A~~--pqei~d~leLe~~r~~~W~vqp~~a~~g 163 (180)
T KOG0071|consen 99 RIEEARNELHRIINDRE-------------MRDAIILILANKQDLPDAMK--PQEIQDKLELERIRDRNWYVQPSCALSG 163 (180)
T ss_pred hHHHHHHHHHHHhCCHh-------------hhcceEEEEecCcccccccC--HHHHHHHhccccccCCccEeeccccccc
Confidence 99999887777665544 33499999999999966433 34443332 222345778888888
Q ss_pred CC
Q psy1873 156 DY 157 (157)
Q Consensus 156 ~~ 157 (157)
+|
T Consensus 164 dg 165 (180)
T KOG0071|consen 164 DG 165 (180)
T ss_pred hh
Confidence 64
No 158
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.86 E-value=1.1e-20 Score=147.30 Aligned_cols=133 Identities=21% Similarity=0.219 Sum_probs=95.6
Q ss_pred CCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcCc------hhhhc--cCCCEEEE
Q psy1873 2 GYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIF------PAQYS--MDIHGYVL 72 (157)
Q Consensus 2 G~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~~~~il 72 (157)
|++|||||||+|++++..+.....+++. +.....+.+++. .+++||++|+.++... ...++ .++|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998876443334433 333445556654 4789999999887654 23333 37899999
Q ss_pred EEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEecc
Q psy1873 73 VYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152 (157)
Q Consensus 73 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 152 (157)
|+|.++.+. ...+..++.+. . .|+++++||+|+.+.+.+. .+.+.+++.+|++++++||
T Consensus 79 VvDat~ler---~l~l~~ql~~~----~-------------~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA 137 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLLEL----G-------------IPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSA 137 (591)
T ss_pred EecCCcchh---hHHHHHHHHhc----C-------------CCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEEC
Confidence 999987543 22233333221 2 9999999999986555554 3578888999999999999
Q ss_pred ccCCC
Q psy1873 153 KQDDY 157 (157)
Q Consensus 153 ~~~~~ 157 (157)
++|+|
T Consensus 138 ~tg~G 142 (591)
T TIGR00437 138 TEGRG 142 (591)
T ss_pred CCCCC
Confidence 99986
No 159
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=3.1e-20 Score=139.08 Aligned_cols=140 Identities=18% Similarity=0.172 Sum_probs=96.7
Q ss_pred CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCcc----CcCchhhhcc---CCCEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDE----YSIFPAQYSM---DIHGYVL 72 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~---~~~~~il 72 (157)
||.||||||||++++++.+. ...|..|+.......+.+++ ...+.+||+||... ...+...+++ .++++++
T Consensus 164 VG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~ 242 (424)
T PRK12297 164 VGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVH 242 (424)
T ss_pred EcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEE
Confidence 69999999999999998764 23344443322222333331 34689999999643 2334455544 5899999
Q ss_pred EEECCCh---hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEE
Q psy1873 73 VYSITSH---KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVE 149 (157)
Q Consensus 73 v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e 149 (157)
|+|+++. +.++....|...+...... +...|++||+||+|+... .+....+++.++.++++
T Consensus 243 VID~s~~~~~dp~e~~~~i~~EL~~y~~~------------L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~ 306 (424)
T PRK12297 243 VIDMSGSEGRDPIEDYEKINKELKLYNPR------------LLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFP 306 (424)
T ss_pred EEeCCccccCChHHHHHHHHHHHhhhchh------------ccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEE
Confidence 9999865 5677777776666654321 123899999999998432 34456677777789999
Q ss_pred eccccCCC
Q psy1873 150 ASAKQDDY 157 (157)
Q Consensus 150 ~Sa~~~~~ 157 (157)
+||++++|
T Consensus 307 iSA~tgeG 314 (424)
T PRK12297 307 ISALTGQG 314 (424)
T ss_pred EeCCCCCC
Confidence 99999986
No 160
>KOG4423|consensus
Probab=99.85 E-value=2.1e-23 Score=136.69 Aligned_cols=147 Identities=27% Similarity=0.339 Sum_probs=123.1
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCe-EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQ-DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS 78 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~ 78 (157)
+|+.|+|||+++.|++...|...|..|++..+ .+....+++ .+++++||+.||++|..|..-|++.+.+..+|||+++
T Consensus 31 ig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~ 110 (229)
T KOG4423|consen 31 IGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTR 110 (229)
T ss_pred eeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccc
Confidence 68999999999999999999989999999766 555566554 4678999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec-HHHHHHHHHHhCC-cEEEeccccCC
Q psy1873 79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS-YDEGKRLAESWKA-GFVEASAKQDD 156 (157)
Q Consensus 79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~-~~~~~~~~~~~~~-~~~e~Sa~~~~ 156 (157)
...|+....|...+.....-. .-.++|+++.+||||........ ..+...+++++|. .++|+|+|++.
T Consensus 111 s~tfe~~skwkqdldsk~qLp----------ng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk 180 (229)
T KOG4423|consen 111 SLTFEPVSKWKQDLDSKLQLP----------NGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK 180 (229)
T ss_pred cccccHHHHHHHhccCcccCC----------CCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence 999999999988876554421 12348999999999986533322 4677889999997 89999999987
Q ss_pred C
Q psy1873 157 Y 157 (157)
Q Consensus 157 ~ 157 (157)
|
T Consensus 181 n 181 (229)
T KOG4423|consen 181 N 181 (229)
T ss_pred C
Confidence 6
No 161
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.85 E-value=1.3e-20 Score=143.01 Aligned_cols=127 Identities=25% Similarity=0.232 Sum_probs=92.7
Q ss_pred CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc--------hhhhccCCCEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF--------PAQYSMDIHGY 70 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~~~~~ 70 (157)
+|++|||||||+|+|++... ...+..|+.+.....+.+++ ..+.+|||+|...+... ...+++.+|++
T Consensus 221 vG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~i 298 (449)
T PRK05291 221 AGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLV 298 (449)
T ss_pred ECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEE
Confidence 69999999999999998764 34444454455566666766 45789999998765432 22367889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEe
Q psy1873 71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEA 150 (157)
Q Consensus 71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 150 (157)
++|+|++++.+++....|.. ... .|+++|+||+|+.+..... ...+.+++++
T Consensus 299 l~VvD~s~~~s~~~~~~l~~-------~~~-------------~piiiV~NK~DL~~~~~~~--------~~~~~~~i~i 350 (449)
T PRK05291 299 LLVLDASEPLTEEDDEILEE-------LKD-------------KPVIVVLNKADLTGEIDLE--------EENGKPVIRI 350 (449)
T ss_pred EEEecCCCCCChhHHHHHHh-------cCC-------------CCcEEEEEhhhccccchhh--------hccCCceEEE
Confidence 99999999888775543322 112 8999999999996533221 3345789999
Q ss_pred ccccCCC
Q psy1873 151 SAKQDDY 157 (157)
Q Consensus 151 Sa~~~~~ 157 (157)
||++|+|
T Consensus 351 SAktg~G 357 (449)
T PRK05291 351 SAKTGEG 357 (449)
T ss_pred EeeCCCC
Confidence 9999986
No 162
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.84 E-value=2e-20 Score=126.29 Aligned_cols=136 Identities=19% Similarity=0.200 Sum_probs=87.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEE-EEEEECCeEEEEEEEeCCCCc----------cCcCchhhhccC---
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV-KTTRMNNQDYDLKLVDTAGQD----------EYSIFPAQYSMD--- 66 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~~~~~~--- 66 (157)
+|++|+|||||++++++..+...+.++.+.... .....++ .+.+||++|.. .+..+...+++.
T Consensus 24 vG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~ 100 (179)
T TIGR03598 24 AGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKREN 100 (179)
T ss_pred EcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChh
Confidence 699999999999999987655444455543321 1122232 57899999953 223333345543
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc--eecHHHHHHHHHHhC
Q psy1873 67 IHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER--MISYDEGKRLAESWK 144 (157)
Q Consensus 67 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~--~~~~~~~~~~~~~~~ 144 (157)
++++++|+|.+++-+..... .+ .++... . .|+++++||+|+.... ....++.+..+...+
T Consensus 101 ~~~ii~vvd~~~~~~~~~~~-~~-~~~~~~---~-------------~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~ 162 (179)
T TIGR03598 101 LKGVVLLMDIRHPLKELDLE-ML-EWLRER---G-------------IPVLIVLTKADKLKKSELNKQLKKIKKALKKDA 162 (179)
T ss_pred hcEEEEEecCCCCCCHHHHH-HH-HHHHHc---C-------------CCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc
Confidence 57999999998754444432 22 222221 2 8999999999986432 223344555555554
Q ss_pred --CcEEEeccccCCC
Q psy1873 145 --AGFVEASAKQDDY 157 (157)
Q Consensus 145 --~~~~e~Sa~~~~~ 157 (157)
.+++++||++|+|
T Consensus 163 ~~~~v~~~Sa~~g~g 177 (179)
T TIGR03598 163 DDPSVQLFSSLKKTG 177 (179)
T ss_pred CCCceEEEECCCCCC
Confidence 4899999999987
No 163
>KOG0096|consensus
Probab=99.84 E-value=5.9e-21 Score=125.51 Aligned_cols=140 Identities=22% Similarity=0.335 Sum_probs=119.8
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeE-EEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQD-YDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|+.|.|||+++.|.+.+.|...+.+|++-.....+...+.. +++..||++|++.+..+...++-.....|++||++.+
T Consensus 16 vGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr 95 (216)
T KOG0096|consen 16 VGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSR 95 (216)
T ss_pred ecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeeeh
Confidence 699999999999999999999999999997665555555554 8999999999999999999988888889999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
-.+.++.+|...+...... +|++++|||.|... +++ ..+.-.+-+..++.|++.||+++-|
T Consensus 96 ~t~~n~~rwhrd~~rv~~N---------------iPiv~cGNKvDi~~-r~~-k~k~v~~~rkknl~y~~iSaksn~N 156 (216)
T KOG0096|consen 96 FTYKNVPRWHRDLVRVREN---------------IPIVLCGNKVDIKA-RKV-KAKPVSFHRKKNLQYYEISAKSNYN 156 (216)
T ss_pred hhhhcchHHHHHHHHHhcC---------------CCeeeeccceeccc-ccc-ccccceeeecccceeEEeecccccc
Confidence 9999999999999888865 89999999999744 442 3445556677789999999998754
No 164
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.84 E-value=9.2e-20 Score=119.87 Aligned_cols=128 Identities=23% Similarity=0.202 Sum_probs=89.9
Q ss_pred CCCCCCChhhhHhhhhccccc--ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc--------hhhhccCCCEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF--------PAQYSMDIHGY 70 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~~~~~ 70 (157)
+|++|+|||||++++++.... .....+........+..++ ..+.+||++|...+... ....+..+|++
T Consensus 7 ~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (157)
T cd04164 7 VGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLV 84 (157)
T ss_pred ECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEE
Confidence 699999999999999987642 2333333333344444444 56789999998665432 22456789999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEe
Q psy1873 71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEA 150 (157)
Q Consensus 71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 150 (157)
++|+|++++.+......+.. ... .|+++++||+|+.+.... .....+.+++++
T Consensus 85 v~v~d~~~~~~~~~~~~~~~-------~~~-------------~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~ 137 (157)
T cd04164 85 LFVIDASRGLDEEDLEILEL-------PAD-------------KPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAI 137 (157)
T ss_pred EEEEECCCCCCHHHHHHHHh-------hcC-------------CCEEEEEEchhcCCcccc-------ccccCCCceEEE
Confidence 99999998887766644332 112 999999999998654332 334446799999
Q ss_pred ccccCCC
Q psy1873 151 SAKQDDY 157 (157)
Q Consensus 151 Sa~~~~~ 157 (157)
||+++.|
T Consensus 138 Sa~~~~~ 144 (157)
T cd04164 138 SAKTGEG 144 (157)
T ss_pred ECCCCCC
Confidence 9999976
No 165
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.84 E-value=4.3e-20 Score=143.93 Aligned_cols=137 Identities=20% Similarity=0.190 Sum_probs=98.6
Q ss_pred CCCCCCChhhhHhhhhccc-------ccccccCC------ccceE-EEE--EEE---CCeEEEEEEEeCCCCccCcCchh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ-------FVDSYDPT------IENTF-VKT--TRM---NNQDYDLKLVDTAGQDEYSIFPA 61 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~-------~~~~~~~t------~~~~~-~~~--~~~---~~~~~~~~i~D~~g~~~~~~~~~ 61 (157)
||+.++|||||+++|+... +...+..+ .+..+ ... +.+ ++..+.+.+|||||+.+|...+.
T Consensus 9 IGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~~~v~ 88 (595)
T TIGR01393 9 IAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYEVS 88 (595)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHHHHHH
Confidence 6999999999999998642 22222222 23222 222 222 46678999999999999999999
Q ss_pred hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH
Q psy1873 62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE 141 (157)
Q Consensus 62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~ 141 (157)
.+++.+|++|+|+|+++..+.+....|+..+ . .. +|+++++||+|+.... .......+++
T Consensus 89 ~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~-------------ipiIiViNKiDl~~~~--~~~~~~el~~ 148 (595)
T TIGR01393 89 RSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----ND-------------LEIIPVINKIDLPSAD--PERVKKEIEE 148 (595)
T ss_pred HHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cC-------------CCEEEEEECcCCCccC--HHHHHHHHHH
Confidence 9999999999999999977777666554433 1 12 8999999999985432 2233455666
Q ss_pred HhCC---cEEEeccccCCC
Q psy1873 142 SWKA---GFVEASAKQDDY 157 (157)
Q Consensus 142 ~~~~---~~~e~Sa~~~~~ 157 (157)
.+++ .++++||++|+|
T Consensus 149 ~lg~~~~~vi~vSAktG~G 167 (595)
T TIGR01393 149 VIGLDASEAILASAKTGIG 167 (595)
T ss_pred HhCCCcceEEEeeccCCCC
Confidence 6776 389999999986
No 166
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.84 E-value=3e-20 Score=121.57 Aligned_cols=134 Identities=22% Similarity=0.255 Sum_probs=92.1
Q ss_pred CCCCCCChhhhHhhhhccccc-ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc------hhhh--ccCCCEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF------PAQY--SMDIHGYV 71 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~--~~~~~~~i 71 (157)
+|.||||||||+|++++.+.. ..+..++-+.....+...+ ..+.++|+||....... ...+ ....|+++
T Consensus 6 vG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii 83 (156)
T PF02421_consen 6 VGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLII 83 (156)
T ss_dssp EESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEE
T ss_pred ECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEE
Confidence 699999999999999998764 3443333343356667767 55788999997554432 2223 36889999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873 72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS 151 (157)
Q Consensus 72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 151 (157)
+|.|.++.+.- .....++++.. +|++++.||+|+.....+.. +...+.+.+|+|.+.+|
T Consensus 84 ~VvDa~~l~r~---l~l~~ql~e~g-----------------~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~s 142 (156)
T PF02421_consen 84 VVVDATNLERN---LYLTLQLLELG-----------------IPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVS 142 (156)
T ss_dssp EEEEGGGHHHH---HHHHHHHHHTT-----------------SSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEB
T ss_pred EECCCCCHHHH---HHHHHHHHHcC-----------------CCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEE
Confidence 99999875432 23344444433 99999999999865555443 37788888999999999
Q ss_pred cccCCC
Q psy1873 152 AKQDDY 157 (157)
Q Consensus 152 a~~~~~ 157 (157)
|++++|
T Consensus 143 a~~~~g 148 (156)
T PF02421_consen 143 ARTGEG 148 (156)
T ss_dssp TTTTBT
T ss_pred eCCCcC
Confidence 999986
No 167
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.84 E-value=1.1e-19 Score=137.77 Aligned_cols=136 Identities=23% Similarity=0.165 Sum_probs=91.2
Q ss_pred CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCch-----------hhhccCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP-----------AQYSMDI 67 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-----------~~~~~~~ 67 (157)
+|.+|+|||||+++|++... ......|..+.+...+..++. .+.+|||+|..++.... ...++.+
T Consensus 178 vG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~a 255 (429)
T TIGR03594 178 IGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERA 255 (429)
T ss_pred ECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHHHHHHHhC
Confidence 69999999999999998654 233444444544555556664 57899999986655432 2357889
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHH-HHHHH----
Q psy1873 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGK-RLAES---- 142 (157)
Q Consensus 68 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~-~~~~~---- 142 (157)
|++|+|+|.+++.+.+... ++..+.. .. .|+++|+||+|+.+. ....++.. .+...
T Consensus 256 d~~ilV~D~~~~~~~~~~~-~~~~~~~----~~-------------~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~ 316 (429)
T TIGR03594 256 DVVLLVLDATEGITEQDLR-IAGLILE----AG-------------KALVIVVNKWDLVKD-EKTREEFKKELRRKLPFL 316 (429)
T ss_pred CEEEEEEECCCCccHHHHH-HHHHHHH----cC-------------CcEEEEEECcccCCC-HHHHHHHHHHHHHhcccC
Confidence 9999999999887766542 2222222 22 899999999998621 11112222 22222
Q ss_pred hCCcEEEeccccCCC
Q psy1873 143 WKAGFVEASAKQDDY 157 (157)
Q Consensus 143 ~~~~~~e~Sa~~~~~ 157 (157)
.+++++++||++|.|
T Consensus 317 ~~~~vi~~SA~~g~~ 331 (429)
T TIGR03594 317 DFAPIVFISALTGQG 331 (429)
T ss_pred CCCceEEEeCCCCCC
Confidence 247999999999986
No 168
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=7.9e-20 Score=139.74 Aligned_cols=132 Identities=18% Similarity=0.124 Sum_probs=86.7
Q ss_pred CCCCCCChhhhHhhhhccccc-ccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCcc--------CcCchhhhccCCCEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDE--------YSIFPAQYSMDIHGY 70 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~~~~~~ 70 (157)
||.+|||||||+|+|++.... ....+++. +.....+.+++. .+.+|||+|.+. +......+++.+|++
T Consensus 44 vG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~i 121 (472)
T PRK03003 44 VGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAV 121 (472)
T ss_pred EcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEE
Confidence 699999999999999987642 22233332 333455556664 478999999763 222345578899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEE
Q psy1873 71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVE 149 (157)
Q Consensus 71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e 149 (157)
|+|+|+++..++.. ..+...+. . .. .|+++|+||+|+.... .+....+ .+++ ..++
T Consensus 122 l~VvD~~~~~s~~~-~~i~~~l~-~---~~-------------~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~ 178 (472)
T PRK03003 122 LFVVDATVGATATD-EAVARVLR-R---SG-------------KPVILAANKVDDERGE---ADAAALW--SLGLGEPHP 178 (472)
T ss_pred EEEEECCCCCCHHH-HHHHHHHH-H---cC-------------CCEEEEEECccCCccc---hhhHHHH--hcCCCCeEE
Confidence 99999998765432 22222222 2 12 9999999999985421 1222222 3344 4579
Q ss_pred eccccCCC
Q psy1873 150 ASAKQDDY 157 (157)
Q Consensus 150 ~Sa~~~~~ 157 (157)
+||++|.|
T Consensus 179 iSA~~g~g 186 (472)
T PRK03003 179 VSALHGRG 186 (472)
T ss_pred EEcCCCCC
Confidence 99999986
No 169
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.83 E-value=3.6e-20 Score=122.63 Aligned_cols=122 Identities=14% Similarity=0.043 Sum_probs=82.7
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCch----hhhccCCCEEEEEEEC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP----AQYSMDIHGYVLVYSI 76 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----~~~~~~~~~~ilv~d~ 76 (157)
||.+|||||||++++.+..... ..+.+. .+... .+||+||+......+ ...++.+|++++|+|.
T Consensus 7 iG~~~~GKstl~~~l~~~~~~~--~~~~~v------~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 7 VGAVGAGKTTLFNALQGNYTLA--RKTQAV------EFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred ECCCCCCHHHHHHHHcCCCccC--ccceEE------EECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 6999999999999987643211 122221 22222 269999974332222 1236899999999999
Q ss_pred CChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC--cEEEecccc
Q psy1873 77 TSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA--GFVEASAKQ 154 (157)
Q Consensus 77 ~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~e~Sa~~ 154 (157)
++.+++. ..|+..+ . .. .|+++++||+|+.. ...+....++...++ |++++||++
T Consensus 75 ~~~~s~~--~~~~~~~---~--~~-------------~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~ 131 (158)
T PRK15467 75 NDPESRL--PAGLLDI---G--VS-------------KRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHD 131 (158)
T ss_pred CCccccc--CHHHHhc---c--CC-------------CCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCC
Confidence 9887752 2343332 1 12 78999999999854 234566777778875 999999999
Q ss_pred CCC
Q psy1873 155 DDY 157 (157)
Q Consensus 155 ~~~ 157 (157)
|+|
T Consensus 132 g~g 134 (158)
T PRK15467 132 PQS 134 (158)
T ss_pred ccC
Confidence 986
No 170
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.82 E-value=2.7e-19 Score=139.06 Aligned_cols=135 Identities=20% Similarity=0.175 Sum_probs=92.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|.+++|||||+++|.+..+...+.+++.... ...+.+++. ..+.+|||||++.|..++...+..+|++|+|+|.++.
T Consensus 93 ~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dg 171 (587)
T TIGR00487 93 MGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDG 171 (587)
T ss_pred ECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCC
Confidence 69999999999999998877655444333222 334444432 2678999999999999999999999999999998874
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC---------CcEEEe
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK---------AGFVEA 150 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~e~ 150 (157)
..-+... .+... .... +|+++++||+|+... ..++....+...+ .+++++
T Consensus 172 v~~qT~e-~i~~~----~~~~-------------vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~i 230 (587)
T TIGR00487 172 VMPQTIE-AISHA----KAAN-------------VPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPV 230 (587)
T ss_pred CCHhHHH-HHHHH----HHcC-------------CCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEE
Confidence 3222211 11111 1112 899999999998542 2233333333322 479999
Q ss_pred ccccCCC
Q psy1873 151 SAKQDDY 157 (157)
Q Consensus 151 Sa~~~~~ 157 (157)
||++|+|
T Consensus 231 SAktGeG 237 (587)
T TIGR00487 231 SALTGDG 237 (587)
T ss_pred ECCCCCC
Confidence 9999987
No 171
>PRK11058 GTPase HflX; Provisional
Probab=99.82 E-value=2.7e-19 Score=134.61 Aligned_cols=137 Identities=17% Similarity=0.094 Sum_probs=88.5
Q ss_pred CCCCCCChhhhHhhhhcccccc-cccCCccceEEEEEEECCeEEEEEEEeCCCCccC--cCchhh------hccCCCEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVD-SYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY--SIFPAQ------YSMDIHGYV 71 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~~~------~~~~~~~~i 71 (157)
||.+|||||||+|+|++..+.. ....++.+.....+.+.+. ..+.+|||+|..+. ..++.. .+..+|++|
T Consensus 203 VG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL 281 (426)
T PRK11058 203 VGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLL 281 (426)
T ss_pred ECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEE
Confidence 6999999999999999876532 2222222333344455442 25679999998442 222222 368899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc-EEEe
Q psy1873 72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAG-FVEA 150 (157)
Q Consensus 72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~ 150 (157)
+|+|++++.+++.+..|...+. ...... +|+++|+||+|+..... . ... ....+.+ ++++
T Consensus 282 ~VvDaS~~~~~e~l~~v~~iL~-el~~~~-------------~pvIiV~NKiDL~~~~~-~--~~~--~~~~~~~~~v~I 342 (426)
T PRK11058 282 HVVDAADVRVQENIEAVNTVLE-EIDAHE-------------IPTLLVMNKIDMLDDFE-P--RID--RDEENKPIRVWL 342 (426)
T ss_pred EEEeCCCccHHHHHHHHHHHHH-HhccCC-------------CCEEEEEEcccCCCchh-H--HHH--HHhcCCCceEEE
Confidence 9999999988877754433332 222222 89999999999854211 1 111 1224555 4899
Q ss_pred ccccCCC
Q psy1873 151 SAKQDDY 157 (157)
Q Consensus 151 Sa~~~~~ 157 (157)
||++|+|
T Consensus 343 SAktG~G 349 (426)
T PRK11058 343 SAQTGAG 349 (426)
T ss_pred eCCCCCC
Confidence 9999986
No 172
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.82 E-value=2.6e-19 Score=118.53 Aligned_cols=137 Identities=22% Similarity=0.173 Sum_probs=87.9
Q ss_pred CCCCCCChhhhHhhhhcccccccc--cCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc--------hhhhccCCCEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSY--DPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF--------PAQYSMDIHGY 70 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~~~~~ 70 (157)
+|++|+|||||++++++....... ..+....... ........+.+||++|....... ....+..+|++
T Consensus 9 ~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 86 (168)
T cd04163 9 VGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRG--IYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLV 86 (168)
T ss_pred ECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEE--EEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEE
Confidence 699999999999999987653221 1221111121 23333467889999997654332 33457888999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CcEEE
Q psy1873 71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK-AGFVE 149 (157)
Q Consensus 71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e 149 (157)
++|+|.+++ +.....++...+... . .|+++++||+|+........+....+....+ .++++
T Consensus 87 ~~v~d~~~~--~~~~~~~~~~~~~~~---~-------------~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (168)
T cd04163 87 LFVVDASEP--IGEGDEFILELLKKS---K-------------TPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFP 148 (168)
T ss_pred EEEEECCCc--cCchHHHHHHHHHHh---C-------------CCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEE
Confidence 999999987 222223333333222 2 8999999999986433333344455555554 58999
Q ss_pred eccccCCC
Q psy1873 150 ASAKQDDY 157 (157)
Q Consensus 150 ~Sa~~~~~ 157 (157)
+||+++.|
T Consensus 149 ~s~~~~~~ 156 (168)
T cd04163 149 ISALKGEN 156 (168)
T ss_pred EEeccCCC
Confidence 99999875
No 173
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=3.1e-19 Score=135.46 Aligned_cols=151 Identities=17% Similarity=0.106 Sum_probs=93.1
Q ss_pred CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCcc----CcCchh---hhccCCCEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDE----YSIFPA---QYSMDIHGYVL 72 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~---~~~~~~~~~il 72 (157)
||.||||||||+++|...+. ...|..|+.......+.+++ ..+.+||+||... ...+.. ..+..++++|+
T Consensus 165 VG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~ 242 (500)
T PRK12296 165 VGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVH 242 (500)
T ss_pred EEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEE
Confidence 69999999999999997655 33444444433344445555 5689999999632 222222 23567899999
Q ss_pred EEECCCh----hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEE
Q psy1873 73 VYSITSH----KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFV 148 (157)
Q Consensus 73 v~d~~~~----~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (157)
|+|+++. +.++.+..+..++......... ..-...+...|++||+||+|+.+...+. +.........+++++
T Consensus 243 VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~---~~~~~~l~~kP~IVVlNKiDL~da~el~-e~l~~~l~~~g~~Vf 318 (500)
T PRK12296 243 VVDCATLEPGRDPLSDIDALEAELAAYAPALDG---DLGLGDLAERPRLVVLNKIDVPDARELA-EFVRPELEARGWPVF 318 (500)
T ss_pred EECCcccccccCchhhHHHHHHHHHHhhhcccc---cchhhhhcCCCEEEEEECccchhhHHHH-HHHHHHHHHcCCeEE
Confidence 9999863 3455555555555443320000 0000002238999999999996543332 222333344578999
Q ss_pred EeccccCCC
Q psy1873 149 EASAKQDDY 157 (157)
Q Consensus 149 e~Sa~~~~~ 157 (157)
++||++++|
T Consensus 319 ~ISA~tgeG 327 (500)
T PRK12296 319 EVSAASREG 327 (500)
T ss_pred EEECCCCCC
Confidence 999999986
No 174
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.82 E-value=3.3e-19 Score=116.94 Aligned_cols=138 Identities=20% Similarity=0.087 Sum_probs=92.5
Q ss_pred CCCCCCChhhhHhhhhccccc-c-cccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchh-------hhccCCCEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV-D-SYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPA-------QYSMDIHGYV 71 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~-~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~~~~~~~~~i 71 (157)
+|++|+|||||++++++.... . ...++............. ...+.+||++|...+..... .++..+|+++
T Consensus 2 ~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 2 FGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred cCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 699999999999999876543 2 222222233333333322 45789999999877665433 4778999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHH---HHHHHHHHhCCcEE
Q psy1873 72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYD---EGKRLAESWKAGFV 148 (157)
Q Consensus 72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~ 148 (157)
+++|.++..+..... +....... . .|+++++||+|+......... .........+++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~~~----~-------------~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLRER----G-------------KPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVI 142 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHHhc----C-------------CeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceE
Confidence 999999987766654 33332221 2 999999999998665433322 12233344457999
Q ss_pred EeccccCCC
Q psy1873 149 EASAKQDDY 157 (157)
Q Consensus 149 e~Sa~~~~~ 157 (157)
++||++++|
T Consensus 143 ~~sa~~~~~ 151 (163)
T cd00880 143 AVSALTGEG 151 (163)
T ss_pred EEeeeccCC
Confidence 999999875
No 175
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.82 E-value=8.9e-19 Score=116.82 Aligned_cols=137 Identities=22% Similarity=0.161 Sum_probs=87.9
Q ss_pred CCCCCCChhhhHhhhhccccc--ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc-----------hhhhccCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF-----------PAQYSMDI 67 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~~~~~~~ 67 (157)
+|.+|+|||||++++++.... .....+........+..++.. +.+||++|....... ....+..+
T Consensus 8 ~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~ 85 (174)
T cd01895 8 IGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERA 85 (174)
T ss_pred EcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCCCccccchhccHHHHHHHHHHHHHhhc
Confidence 699999999999999987642 222233333334455555544 678999997544211 12245789
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHH-HHHHHHh---
Q psy1873 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEG-KRLAESW--- 143 (157)
Q Consensus 68 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~-~~~~~~~--- 143 (157)
|++++|+|.+++.+.... .++..+.. .. .|+++++||+|+........++. ..+.+.+
T Consensus 86 d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~-------------~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 147 (174)
T cd01895 86 DVVLLVIDATEGITEQDL-RIAGLILE----EG-------------KALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFL 147 (174)
T ss_pred CeEEEEEeCCCCcchhHH-HHHHHHHh----cC-------------CCEEEEEeccccCCccHHHHHHHHHHHHhhcccc
Confidence 999999999988775543 22222221 12 89999999999865432222222 2222333
Q ss_pred -CCcEEEeccccCCC
Q psy1873 144 -KAGFVEASAKQDDY 157 (157)
Q Consensus 144 -~~~~~e~Sa~~~~~ 157 (157)
+.+++++||++++|
T Consensus 148 ~~~~~~~~Sa~~~~~ 162 (174)
T cd01895 148 DYAPIVFISALTGQG 162 (174)
T ss_pred cCCceEEEeccCCCC
Confidence 36899999999986
No 176
>KOG0076|consensus
Probab=99.82 E-value=2.5e-20 Score=120.99 Aligned_cols=141 Identities=21% Similarity=0.260 Sum_probs=106.5
Q ss_pred CCCCCCChhhhHhhhhcc-------cccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDG-------QFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLV 73 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~-------~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv 73 (157)
+|..++|||||+.+.... --.....+|++-. ..++.+. ...+.+||.+||+..+++|..|+..++++|++
T Consensus 23 lgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLn-ig~i~v~--~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~v 99 (197)
T KOG0076|consen 23 LGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLN-IGTIEVC--NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYV 99 (197)
T ss_pred eccccCCchhHHHHHHHHHHhhhcCCCHHHeeccccee-ecceeec--cceeEEEEcCChHHHHHHHHHHHHHhceeEEe
Confidence 599999999999887532 1123455666633 2333444 46789999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHH-HHHHHHHh---CCcEEE
Q psy1873 74 YSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDE-GKRLAESW---KAGFVE 149 (157)
Q Consensus 74 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~-~~~~~~~~---~~~~~e 149 (157)
+|.++++.|+.....+..+........ +|+++.+||.|+.+......-+ ....+... ..++..
T Consensus 100 iDa~~~eR~~~~~t~~~~v~~~E~leg-------------~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~p 166 (197)
T KOG0076|consen 100 IDATDRERFEESKTAFEKVVENEKLEG-------------APVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQP 166 (197)
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHHhcC-------------CchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCcccc
Confidence 999999999999888888887776655 9999999999997654432221 11112222 268999
Q ss_pred eccccCCC
Q psy1873 150 ASAKQDDY 157 (157)
Q Consensus 150 ~Sa~~~~~ 157 (157)
+||.+|+|
T Consensus 167 vSal~geg 174 (197)
T KOG0076|consen 167 VSALTGEG 174 (197)
T ss_pred chhhhccc
Confidence 99999986
No 177
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.82 E-value=2.7e-19 Score=139.37 Aligned_cols=134 Identities=19% Similarity=0.226 Sum_probs=95.5
Q ss_pred CCCCCCChhhhHhhhhcc---cccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEEC
Q psy1873 1 MGYRSVGKSSLSIQFVDG---QFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSI 76 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~---~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~ 76 (157)
+|.+++|||||+++|++. .+..++..++.... ...+..++ ..+.+||+||+++|.......+.++|++|+|+|.
T Consensus 6 iG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa 83 (581)
T TIGR00475 6 AGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDA 83 (581)
T ss_pred ECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEEC
Confidence 699999999999999863 33333444444222 33455555 6789999999999988777888999999999999
Q ss_pred CC---hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEEEEeCCCCCCCcee--cHHHHHHHHHHh----CCc
Q psy1873 77 TS---HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVLVGNKKDLHMERMI--SYDEGKRLAESW----KAG 146 (157)
Q Consensus 77 ~~---~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~vv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~ 146 (157)
++ +++++.+. ++... . +| ++|++||+|+.+...+ ..++...++... +++
T Consensus 84 ~~G~~~qT~ehl~-----il~~l---g-------------i~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ 142 (581)
T TIGR00475 84 DEGVMTQTGEHLA-----VLDLL---G-------------IPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAK 142 (581)
T ss_pred CCCCcHHHHHHHH-----HHHHc---C-------------CCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 98 45554442 22222 1 67 9999999999654432 234455555554 478
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
++++||++|+|
T Consensus 143 ii~vSA~tG~G 153 (581)
T TIGR00475 143 IFKTSAKTGQG 153 (581)
T ss_pred EEEEeCCCCCC
Confidence 99999999986
No 178
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.81 E-value=2e-19 Score=121.84 Aligned_cols=139 Identities=19% Similarity=0.090 Sum_probs=92.1
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCc--------------cceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTI--------------ENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM 65 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 65 (157)
+|.+|+|||||++++++.........+. +... .....+......+.+||++|...+...+..++.
T Consensus 5 ~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~ 84 (189)
T cd00881 5 AGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVIRGLS 84 (189)
T ss_pred EeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHHHHHH
Confidence 5999999999999998876654331111 0001 111122223467899999999988888888999
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHHH-
Q psy1873 66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMI--SYDEGKRLAES- 142 (157)
Q Consensus 66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~--~~~~~~~~~~~- 142 (157)
.+|++++|+|.+++.+.... .++..+.. .. .|+++++||+|+...... ...+.....+.
T Consensus 85 ~~d~~i~v~d~~~~~~~~~~-~~~~~~~~----~~-------------~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~ 146 (189)
T cd00881 85 VSDGAILVVDANEGVQPQTR-EHLRIARE----GG-------------LPIIVAINKIDRVGEEDLEEVLREIKELLGLI 146 (189)
T ss_pred hcCEEEEEEECCCCCcHHHH-HHHHHHHH----CC-------------CCeEEEEECCCCcchhcHHHHHHHHHHHHccc
Confidence 99999999999876654322 33333222 22 999999999998652221 12333333332
Q ss_pred -------------hCCcEEEeccccCCC
Q psy1873 143 -------------WKAGFVEASAKQDDY 157 (157)
Q Consensus 143 -------------~~~~~~e~Sa~~~~~ 157 (157)
...+++++||++|.|
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~Sa~~g~g 174 (189)
T cd00881 147 GFISTKEEGTRNGLLVPIVPGSALTGIG 174 (189)
T ss_pred cccchhhhhcccCCcceEEEEecccCcC
Confidence 346899999999976
No 179
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.81 E-value=2.1e-19 Score=122.53 Aligned_cols=139 Identities=19% Similarity=0.148 Sum_probs=83.6
Q ss_pred CCCCCCChhhhHhhhhcc----cccccc-----cCCccceE-EEEEE----------ECCeEEEEEEEeCCCCccCcCch
Q psy1873 1 MGYRSVGKSSLSIQFVDG----QFVDSY-----DPTIENTF-VKTTR----------MNNQDYDLKLVDTAGQDEYSIFP 60 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~----~~~~~~-----~~t~~~~~-~~~~~----------~~~~~~~~~i~D~~g~~~~~~~~ 60 (157)
+|++++|||||+++|+.. .+...+ ..|+...+ ...+. .++..+.+.+||+||+..+....
T Consensus 6 ~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~ 85 (192)
T cd01889 6 LGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASLIRTI 85 (192)
T ss_pred EecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHHHHHHH
Confidence 699999999999999862 111111 12333222 22221 12346788999999997543333
Q ss_pred hhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce--ecHHHHHH
Q psy1873 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM--ISYDEGKR 138 (157)
Q Consensus 61 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~--~~~~~~~~ 138 (157)
......+|++++|+|.++....+....+. +.... . .|+++++||+|+..... ...++..+
T Consensus 86 ~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~~---~-------------~~~iiv~NK~Dl~~~~~~~~~~~~~~~ 147 (192)
T cd01889 86 IGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEIL---C-------------KKLIVVLNKIDLIPEEERERKIEKMKK 147 (192)
T ss_pred HHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHHc---C-------------CCEEEEEECcccCCHHHHHHHHHHHHH
Confidence 33456679999999998754433332221 11111 2 89999999999864222 12222222
Q ss_pred H-HH------HhCCcEEEeccccCCC
Q psy1873 139 L-AE------SWKAGFVEASAKQDDY 157 (157)
Q Consensus 139 ~-~~------~~~~~~~e~Sa~~~~~ 157 (157)
. .. ..+++++++||++|+|
T Consensus 148 ~l~~~~~~~~~~~~~vi~iSa~~g~g 173 (192)
T cd01889 148 KLQKTLEKTRFKNSPIIPVSAKPGGG 173 (192)
T ss_pred HHHHHHHhcCcCCCCEEEEeccCCCC
Confidence 1 11 1357999999999987
No 180
>PRK00089 era GTPase Era; Reviewed
Probab=99.81 E-value=4.8e-19 Score=128.05 Aligned_cols=137 Identities=22% Similarity=0.192 Sum_probs=88.8
Q ss_pred CCCCCCChhhhHhhhhccccc--ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC--------chhhhccCCCEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI--------FPAQYSMDIHGY 70 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~~~~ 70 (157)
+|++|||||||+|++++.++. .....|...........+ ...+.+|||||...... .....+.++|++
T Consensus 11 iG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~i 88 (292)
T PRK00089 11 VGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLV 88 (292)
T ss_pred ECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEE
Confidence 699999999999999987763 222233333222222222 36789999999755432 223356789999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CcEEE
Q psy1873 71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK-AGFVE 149 (157)
Q Consensus 71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e 149 (157)
++|+|+++. +.....++...+.. .. .|+++|+||+|+.............+.+..+ .++++
T Consensus 89 l~vvd~~~~--~~~~~~~i~~~l~~---~~-------------~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~ 150 (292)
T PRK00089 89 LFVVDADEK--IGPGDEFILEKLKK---VK-------------TPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVP 150 (292)
T ss_pred EEEEeCCCC--CChhHHHHHHHHhh---cC-------------CCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEE
Confidence 999999882 22222333333321 12 8999999999996433333344555655555 58999
Q ss_pred eccccCCC
Q psy1873 150 ASAKQDDY 157 (157)
Q Consensus 150 ~Sa~~~~~ 157 (157)
+||++|+|
T Consensus 151 iSA~~~~g 158 (292)
T PRK00089 151 ISALKGDN 158 (292)
T ss_pred ecCCCCCC
Confidence 99999976
No 181
>KOG0074|consensus
Probab=99.81 E-value=2.3e-19 Score=112.92 Aligned_cols=140 Identities=21% Similarity=0.292 Sum_probs=106.8
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|-.++|||||+..+...... ...||.|.. .+.+..++ .+.+.+||.+||...++.|..|+.+.|++|+|+|.+|..
T Consensus 23 lGldnAGKTT~LKqL~sED~~-hltpT~GFn-~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~k 99 (185)
T KOG0074|consen 23 LGLDNAGKTTFLKQLKSEDPR-HLTPTNGFN-TKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEK 99 (185)
T ss_pred EecCCCcchhHHHHHccCChh-hccccCCcc-eEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchH
Confidence 588999999999998865543 334666643 33444443 478999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHH----HHHhCCcEEEeccccCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRL----AESWKAGFVEASAKQDD 156 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~~~ 156 (157)
.|+++.+.+.++++...-.. +|++|.+||+|+.....+. +.+.++ .+.....+.+|||.+++
T Consensus 100 rfeE~~~el~ELleeeKl~~-------------vpvlIfankQdlltaa~~e-eia~klnl~~lrdRswhIq~csals~e 165 (185)
T KOG0074|consen 100 RFEEISEELVELLEEEKLAE-------------VPVLIFANKQDLLTAAKVE-EIALKLNLAGLRDRSWHIQECSALSLE 165 (185)
T ss_pred hHHHHHHHHHHHhhhhhhhc-------------cceeehhhhhHHHhhcchH-HHHHhcchhhhhhceEEeeeCcccccc
Confidence 99999988888887776444 9999999999986544432 222221 12223578899999887
Q ss_pred C
Q psy1873 157 Y 157 (157)
Q Consensus 157 ~ 157 (157)
|
T Consensus 166 g 166 (185)
T KOG0074|consen 166 G 166 (185)
T ss_pred C
Confidence 5
No 182
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=4.4e-19 Score=134.61 Aligned_cols=130 Identities=18% Similarity=0.119 Sum_probs=88.7
Q ss_pred CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccC--------cCchhhhccCCCEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY--------SIFPAQYSMDIHGY 70 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~~~~~~~~ 70 (157)
||.+|||||||+|+|++... ...+..+..+.....+.+++ ..+.+|||+|.... ......++..+|++
T Consensus 7 vG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~i 84 (435)
T PRK00093 7 VGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIEEADVI 84 (435)
T ss_pred ECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEE
Confidence 69999999999999998764 33333333344455566666 66899999998762 22234567899999
Q ss_pred EEEEECCChhhH--HHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cE
Q psy1873 71 VLVYSITSHKSF--EVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GF 147 (157)
Q Consensus 71 ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~ 147 (157)
|+|+|.+++.+. ..+..|+.. . . .|+++|+||+|+.+. ......+ ..+++ .+
T Consensus 85 l~vvd~~~~~~~~~~~~~~~l~~----~---~-------------~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~ 139 (435)
T PRK00093 85 LFVVDGRAGLTPADEEIAKILRK----S---N-------------KPVILVVNKVDGPDE----EADAYEF-YSLGLGEP 139 (435)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----c---C-------------CcEEEEEECccCccc----hhhHHHH-HhcCCCCC
Confidence 999999875332 223333332 2 2 899999999997441 1222222 35576 48
Q ss_pred EEeccccCCC
Q psy1873 148 VEASAKQDDY 157 (157)
Q Consensus 148 ~e~Sa~~~~~ 157 (157)
+++||++|.|
T Consensus 140 ~~iSa~~g~g 149 (435)
T PRK00093 140 YPISAEHGRG 149 (435)
T ss_pred EEEEeeCCCC
Confidence 9999999986
No 183
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.80 E-value=6.3e-19 Score=120.32 Aligned_cols=137 Identities=18% Similarity=0.121 Sum_probs=86.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCc----------cCcCchhhhccCC---
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQD----------EYSIFPAQYSMDI--- 67 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~~~~~~~--- 67 (157)
||++|||||||+++|++..+...+.++.+......... ....+.+||++|.. .+..+...+++.+
T Consensus 30 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (196)
T PRK00454 30 AGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENL 107 (196)
T ss_pred EcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--cCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccc
Confidence 69999999999999998776655555655333211111 12568999999943 3333444555544
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCcee--cHHHHHHHHHHhCC
Q psy1873 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMI--SYDEGKRLAESWKA 145 (157)
Q Consensus 68 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~--~~~~~~~~~~~~~~ 145 (157)
+++++++|.+++..... .++...+... . .|+++++||+|+...... .......+......
T Consensus 108 ~~~~~v~d~~~~~~~~~--~~i~~~l~~~---~-------------~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~ 169 (196)
T PRK00454 108 KGVVLLIDSRHPLKELD--LQMIEWLKEY---G-------------IPVLIVLTKADKLKKGERKKQLKKVRKALKFGDD 169 (196)
T ss_pred eEEEEEEecCCCCCHHH--HHHHHHHHHc---C-------------CcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 57788888876543322 2222222221 2 889999999998653322 12223344444467
Q ss_pred cEEEeccccCCC
Q psy1873 146 GFVEASAKQDDY 157 (157)
Q Consensus 146 ~~~e~Sa~~~~~ 157 (157)
+++++||++|+|
T Consensus 170 ~~~~~Sa~~~~g 181 (196)
T PRK00454 170 EVILFSSLKKQG 181 (196)
T ss_pred ceEEEEcCCCCC
Confidence 999999999976
No 184
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.80 E-value=1.3e-18 Score=129.64 Aligned_cols=143 Identities=20% Similarity=0.163 Sum_probs=96.7
Q ss_pred CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC----chh---hhccCCCEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI----FPA---QYSMDIHGYVL 72 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~~---~~~~~~~~~il 72 (157)
||.||||||||+|++++.+. ...+..|+.......+..++ ...+.++|+||...-.. +.. ..+..++++++
T Consensus 165 VG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~ 243 (390)
T PRK12298 165 LGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLH 243 (390)
T ss_pred EcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEE
Confidence 69999999999999998665 34455555544444444432 23478999999753221 222 24678899999
Q ss_pred EEECC---ChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CcE
Q psy1873 73 VYSIT---SHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK--AGF 147 (157)
Q Consensus 73 v~d~~---~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~ 147 (157)
|+|++ +.+.++....|+.++...... +...|++||+||+|+.....+ .+....+....+ .++
T Consensus 244 VVD~s~~~~~d~~e~~~~l~~eL~~~~~~------------L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~V 310 (390)
T PRK12298 244 LIDIAPIDGSDPVENARIIINELEKYSPK------------LAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPV 310 (390)
T ss_pred EeccCcccccChHHHHHHHHHHHHhhhhh------------hcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCE
Confidence 99998 456677777777776654321 122899999999998654333 233445555544 478
Q ss_pred EEeccccCCC
Q psy1873 148 VEASAKQDDY 157 (157)
Q Consensus 148 ~e~Sa~~~~~ 157 (157)
+.+||++++|
T Consensus 311 i~ISA~tg~G 320 (390)
T PRK12298 311 YLISAASGLG 320 (390)
T ss_pred EEEECCCCcC
Confidence 9999999976
No 185
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.80 E-value=7.4e-19 Score=138.74 Aligned_cols=133 Identities=18% Similarity=0.278 Sum_probs=93.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCcc---ceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE---NTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSIT 77 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~ 77 (157)
||..++|||||+++|....+.....+++. ..+...+..++....+.+|||||++.|..++...+..+|++|+|+|++
T Consensus 250 vGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~ 329 (742)
T CHL00189 250 LGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAAD 329 (742)
T ss_pred ECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECc
Confidence 69999999999999998776544333322 122333334445678999999999999999999999999999999998
Q ss_pred Ch---hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHH-------HHHHhC--C
Q psy1873 78 SH---KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKR-------LAESWK--A 145 (157)
Q Consensus 78 ~~---~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~-------~~~~~~--~ 145 (157)
+. ++++.+. .+ .... +|++|++||+|+.... ..+... +...++ +
T Consensus 330 dGv~~QT~E~I~----~~----k~~~-------------iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~v 385 (742)
T CHL00189 330 DGVKPQTIEAIN----YI----QAAN-------------VPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDT 385 (742)
T ss_pred CCCChhhHHHHH----HH----HhcC-------------ceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCc
Confidence 74 3333332 11 1112 9999999999986432 122211 123334 6
Q ss_pred cEEEeccccCCC
Q psy1873 146 GFVEASAKQDDY 157 (157)
Q Consensus 146 ~~~e~Sa~~~~~ 157 (157)
+++++||++|+|
T Consensus 386 pvv~VSAktG~G 397 (742)
T CHL00189 386 PMIPISASQGTN 397 (742)
T ss_pred eEEEEECCCCCC
Confidence 899999999986
No 186
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.79 E-value=1.5e-18 Score=138.02 Aligned_cols=134 Identities=22% Similarity=0.256 Sum_probs=91.8
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|..++|||||+++|....+......++.... ...+.+++ ..+.||||||+..|..++...+..+|++|||+|.++.
T Consensus 296 mGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddG 373 (787)
T PRK05306 296 MGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDG 373 (787)
T ss_pred ECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCC
Confidence 69999999999999988777544333332111 33444554 5688999999999999999999999999999999874
Q ss_pred ---hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc--eecHH--HHHHHHHHhC--CcEEEe
Q psy1873 80 ---KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER--MISYD--EGKRLAESWK--AGFVEA 150 (157)
Q Consensus 80 ---~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~--~~~~~--~~~~~~~~~~--~~~~e~ 150 (157)
++.+.+. ...... +|++|++||+|+.... .+... +...++..++ ++++++
T Consensus 374 v~~qT~e~i~--------~a~~~~-------------vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpv 432 (787)
T PRK05306 374 VMPQTIEAIN--------HAKAAG-------------VPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPV 432 (787)
T ss_pred CCHhHHHHHH--------HHHhcC-------------CcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEE
Confidence 3333321 111112 9999999999985421 11111 0111233344 689999
Q ss_pred ccccCCC
Q psy1873 151 SAKQDDY 157 (157)
Q Consensus 151 Sa~~~~~ 157 (157)
||++|+|
T Consensus 433 SAktG~G 439 (787)
T PRK05306 433 SAKTGEG 439 (787)
T ss_pred eCCCCCC
Confidence 9999987
No 187
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.79 E-value=1.5e-18 Score=131.53 Aligned_cols=132 Identities=20% Similarity=0.134 Sum_probs=88.8
Q ss_pred CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCcc--------CcCchhhhccCCCEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDE--------YSIFPAQYSMDIHGY 70 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~~~~~~ 70 (157)
||.+|||||||+|+|++... ...+..++.+.....+.+++. .+.+|||+|... +......+++.+|++
T Consensus 5 vG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~v 82 (429)
T TIGR03594 5 VGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVI 82 (429)
T ss_pred ECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEE
Confidence 69999999999999998764 233333333444555566664 579999999632 333455678899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEE
Q psy1873 71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVE 149 (157)
Q Consensus 71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e 149 (157)
++|+|..+...... ..+..++... . .|+++|+||+|+...... ... ...+++ ++++
T Consensus 83 l~vvD~~~~~~~~d--~~i~~~l~~~---~-------------~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~ 139 (429)
T TIGR03594 83 LFVVDGREGLTPED--EEIAKWLRKS---G-------------KPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIP 139 (429)
T ss_pred EEEEeCCCCCCHHH--HHHHHHHHHh---C-------------CCEEEEEECccCCccccc----HHH-HHhcCCCCeEE
Confidence 99999987533322 2222222222 2 899999999998653321 122 345677 8999
Q ss_pred eccccCCC
Q psy1873 150 ASAKQDDY 157 (157)
Q Consensus 150 ~Sa~~~~~ 157 (157)
+||++|.|
T Consensus 140 vSa~~g~g 147 (429)
T TIGR03594 140 ISAEHGRG 147 (429)
T ss_pred EeCCcCCC
Confidence 99999976
No 188
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.78 E-value=5.3e-18 Score=135.29 Aligned_cols=135 Identities=17% Similarity=0.178 Sum_probs=94.5
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc----------hhhh--ccCCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF----------PAQY--SMDIH 68 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~--~~~~~ 68 (157)
+|++|||||||+|++++.+......+.+..+ .+...+......+.+||+||..++... ...+ ...+|
T Consensus 9 vG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve-~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD 87 (772)
T PRK09554 9 IGNPNSGKTTLFNQLTGARQRVGNWAGVTVE-RKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDAD 87 (772)
T ss_pred ECCCCCCHHHHHHHHhCCCCccCCCCCceEe-eEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCC
Confidence 6999999999999999876532222222111 222233444567899999999877542 1123 24789
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEE
Q psy1873 69 GYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFV 148 (157)
Q Consensus 69 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (157)
++++|+|.++.++- ..++.++.+. + .|+++++||+|+.+.+.+. .+.+.+.+.+|++++
T Consensus 88 ~vI~VvDat~ler~---l~l~~ql~e~----g-------------iPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVv 146 (772)
T PRK09554 88 LLINVVDASNLERN---LYLTLQLLEL----G-------------IPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVI 146 (772)
T ss_pred EEEEEecCCcchhh---HHHHHHHHHc----C-------------CCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEE
Confidence 99999999886542 2344444432 2 9999999999986555553 457788899999999
Q ss_pred EeccccCCC
Q psy1873 149 EASAKQDDY 157 (157)
Q Consensus 149 e~Sa~~~~~ 157 (157)
++||++|+|
T Consensus 147 piSA~~g~G 155 (772)
T PRK09554 147 PLVSTRGRG 155 (772)
T ss_pred EEEeecCCC
Confidence 999999986
No 189
>KOG0072|consensus
Probab=99.78 E-value=4.6e-19 Score=111.87 Aligned_cols=138 Identities=16% Similarity=0.216 Sum_probs=103.5
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|-.|+|||+++.++.-+... ...||++... . .+..+...+++||.+|+-..++.|.-|+.+.+++|+|.|.+|+.
T Consensus 24 lgldGaGkttIlyrlqvgevv-ttkPtigfnv-e--~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~d 99 (182)
T KOG0072|consen 24 LGLDGAGKTTILYRLQVGEVV-TTKPTIGFNV-E--TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRD 99 (182)
T ss_pred eeccCCCeeEEEEEcccCccc-ccCCCCCcCc-c--ccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchh
Confidence 578899999999998755544 3457777432 2 23336678899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHH-----HHHHHhCCcEEEeccccC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGK-----RLAESWKAGFVEASAKQD 155 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~e~Sa~~~ 155 (157)
.+......+-.++....-.. ..++|++||.|...... ..++. .-.+..-+.+|++||.+|
T Consensus 100 ris~a~~el~~mL~E~eLq~-------------a~llv~anKqD~~~~~t--~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg 164 (182)
T KOG0072|consen 100 RISIAGVELYSMLQEEELQH-------------AKLLVFANKQDYSGALT--RSEVLKMLGLQKLKDRIWQIVKTSAVKG 164 (182)
T ss_pred hhhhhHHHHHHHhccHhhcC-------------ceEEEEeccccchhhhh--HHHHHHHhChHHHhhheeEEEeeccccc
Confidence 98888777777776655433 88999999999854322 22222 122222368999999999
Q ss_pred CC
Q psy1873 156 DY 157 (157)
Q Consensus 156 ~~ 157 (157)
+|
T Consensus 165 ~G 166 (182)
T KOG0072|consen 165 EG 166 (182)
T ss_pred cC
Confidence 86
No 190
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.78 E-value=2.3e-18 Score=137.23 Aligned_cols=135 Identities=23% Similarity=0.184 Sum_probs=91.5
Q ss_pred CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCc----------Cch-hhhccCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS----------IFP-AQYSMDI 67 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------~~~-~~~~~~~ 67 (157)
+|.+|||||||+|+|++... ...+.+|+.+.+...+.+++.. +.+|||+|..+.. .+. ...++.+
T Consensus 456 vG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~a 533 (712)
T PRK09518 456 VGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERS 533 (712)
T ss_pred ECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHHHHHhhcC
Confidence 69999999999999998864 3455555555556666777765 5689999964321 111 2346889
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHH-HHHHh---
Q psy1873 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKR-LAESW--- 143 (157)
Q Consensus 68 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~-~~~~~--- 143 (157)
|++++|+|.++..+.+.+. ++..+... . .|++||+||+|+.+... .+.... +...+
T Consensus 534 dvvilViDat~~~s~~~~~-i~~~~~~~----~-------------~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~ 593 (712)
T PRK09518 534 ELALFLFDASQPISEQDLK-VMSMAVDA----G-------------RALVLVFNKWDLMDEFR--RQRLERLWKTEFDRV 593 (712)
T ss_pred CEEEEEEECCCCCCHHHHH-HHHHHHHc----C-------------CCEEEEEEchhcCChhH--HHHHHHHHHHhccCC
Confidence 9999999999988877664 33333221 2 89999999999965322 111221 11221
Q ss_pred -CCcEEEeccccCCC
Q psy1873 144 -KAGFVEASAKQDDY 157 (157)
Q Consensus 144 -~~~~~e~Sa~~~~~ 157 (157)
..+.+.+||++|.|
T Consensus 594 ~~~~ii~iSAktg~g 608 (712)
T PRK09518 594 TWARRVNLSAKTGWH 608 (712)
T ss_pred CCCCEEEEECCCCCC
Confidence 24779999999986
No 191
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.77 E-value=3.6e-18 Score=132.70 Aligned_cols=105 Identities=20% Similarity=0.247 Sum_probs=74.2
Q ss_pred CCCCCCChhhhHhhhhccccccc----ccCCccceEEEEEE-------------ECCeEEEEEEEeCCCCccCcCchhhh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDS----YDPTIENTFVKTTR-------------MNNQDYDLKLVDTAGQDEYSIFPAQY 63 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~----~~~t~~~~~~~~~~-------------~~~~~~~~~i~D~~g~~~~~~~~~~~ 63 (157)
+|.+++|||||+++|++..+... ...+++..+...-. ++.+...+.+|||||++.|..++..+
T Consensus 10 iG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~~~~ 89 (590)
T TIGR00491 10 LGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRKRG 89 (590)
T ss_pred ECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHHHHHH
Confidence 69999999999999998776433 23334432211100 01111237899999999999999999
Q ss_pred ccCCCEEEEEEECCC---hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873 64 SMDIHGYVLVYSITS---HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH 126 (157)
Q Consensus 64 ~~~~~~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~ 126 (157)
++.+|++++|+|+++ +++++.+..+ ... . +|+++++||+|+.
T Consensus 90 ~~~aD~~IlVvD~~~g~~~qt~e~i~~l-----~~~---~-------------vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 90 GALADLAILIVDINEGFKPQTQEALNIL-----RMY---K-------------TPFVVAANKIDRI 134 (590)
T ss_pred HhhCCEEEEEEECCcCCCHhHHHHHHHH-----HHc---C-------------CCEEEEEECCCcc
Confidence 999999999999997 5555554321 111 2 8999999999985
No 192
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.76 E-value=2.8e-17 Score=115.12 Aligned_cols=78 Identities=21% Similarity=0.212 Sum_probs=55.7
Q ss_pred CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCc----C---chhhhccCCCEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS----I---FPAQYSMDIHGYVL 72 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~---~~~~~~~~~~~~il 72 (157)
+|++|||||||+++|.+... ...+..++.......+.+++ ..+++||+||..+.. . .....++++|++++
T Consensus 6 vG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~ 83 (233)
T cd01896 6 VGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILM 83 (233)
T ss_pred ECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCCEEEE
Confidence 69999999999999998754 33344343333345555655 568999999975443 1 12346889999999
Q ss_pred EEECCChh
Q psy1873 73 VYSITSHK 80 (157)
Q Consensus 73 v~d~~~~~ 80 (157)
|+|.+++.
T Consensus 84 V~D~t~~~ 91 (233)
T cd01896 84 VLDATKPE 91 (233)
T ss_pred EecCCcch
Confidence 99998765
No 193
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=1.2e-17 Score=126.74 Aligned_cols=136 Identities=24% Similarity=0.154 Sum_probs=87.7
Q ss_pred CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCch-----------hhhccCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP-----------AQYSMDI 67 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-----------~~~~~~~ 67 (157)
+|.+|+|||||+++|++... ......+..+.....+..++. .+.+|||+|..+...+. ...++.+
T Consensus 179 vG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~a 256 (435)
T PRK00093 179 IGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQ--KYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERA 256 (435)
T ss_pred ECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCe--eEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHC
Confidence 69999999999999997653 233333433444444455554 46789999975443321 2357789
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH----HHh
Q psy1873 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA----ESW 143 (157)
Q Consensus 68 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~----~~~ 143 (157)
|++|+|+|++++.+.+... ++..+.. .. .|+++++||+|+.+.... .+....+. ...
T Consensus 257 d~~ilViD~~~~~~~~~~~-i~~~~~~----~~-------------~~~ivv~NK~Dl~~~~~~-~~~~~~~~~~l~~~~ 317 (435)
T PRK00093 257 DVVLLVIDATEGITEQDLR-IAGLALE----AG-------------RALVIVVNKWDLVDEKTM-EEFKKELRRRLPFLD 317 (435)
T ss_pred CEEEEEEeCCCCCCHHHHH-HHHHHHH----cC-------------CcEEEEEECccCCCHHHH-HHHHHHHHHhccccc
Confidence 9999999999887765542 2222222 12 899999999998643211 11111222 222
Q ss_pred CCcEEEeccccCCC
Q psy1873 144 KAGFVEASAKQDDY 157 (157)
Q Consensus 144 ~~~~~e~Sa~~~~~ 157 (157)
.++++++||++|.|
T Consensus 318 ~~~i~~~SA~~~~g 331 (435)
T PRK00093 318 YAPIVFISALTGQG 331 (435)
T ss_pred CCCEEEEeCCCCCC
Confidence 47999999999976
No 194
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.76 E-value=1.4e-17 Score=109.45 Aligned_cols=136 Identities=18% Similarity=0.229 Sum_probs=96.1
Q ss_pred CCCCCCChhhhHhhhhccccccc--------cc----CCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDS--------YD----PTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIH 68 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~--------~~----~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 68 (157)
.|+.++||||++.++.+...... +. .|+..+|......+ ...++++++|||++|..+|..+++++.
T Consensus 16 ~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~--~~~v~LfgtPGq~RF~fm~~~l~~ga~ 93 (187)
T COG2229 16 IGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE--DTGVHLFGTPGQERFKFMWEILSRGAV 93 (187)
T ss_pred EcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC--cceEEEecCCCcHHHHHHHHHHhCCcc
Confidence 48999999999999987664211 11 12222222221222 245789999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh--CCc
Q psy1873 69 GYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESW--KAG 146 (157)
Q Consensus 69 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~ 146 (157)
+.|++.|.+++..+ .....+..+....+ +|++|++||.||.+ ..+.++.+++.+.. .++
T Consensus 94 gaivlVDss~~~~~-~a~~ii~f~~~~~~----------------ip~vVa~NK~DL~~--a~ppe~i~e~l~~~~~~~~ 154 (187)
T COG2229 94 GAIVLVDSSRPITF-HAEEIIDFLTSRNP----------------IPVVVAINKQDLFD--ALPPEKIREALKLELLSVP 154 (187)
T ss_pred eEEEEEecCCCcch-HHHHHHHHHhhccC----------------CCEEEEeeccccCC--CCCHHHHHHHHHhccCCCc
Confidence 99999999999988 44333333332222 89999999999965 34455555555444 789
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
.++.+|.++++
T Consensus 155 vi~~~a~e~~~ 165 (187)
T COG2229 155 VIEIDATEGEG 165 (187)
T ss_pred eeeeecccchh
Confidence 99999998764
No 195
>COG1159 Era GTPase [General function prediction only]
Probab=99.75 E-value=2.4e-17 Score=116.15 Aligned_cols=137 Identities=20% Similarity=0.165 Sum_probs=91.5
Q ss_pred CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc--------hhhhccCCCEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF--------PAQYSMDIHGY 70 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~~~~~ 70 (157)
||.||||||||+|++++.+. .+....|+.......+..+ ...+.+.||||-..-... ....+.++|++
T Consensus 12 iGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDli 89 (298)
T COG1159 12 IGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLI 89 (298)
T ss_pred EcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEE
Confidence 69999999999999999887 3444455554444444444 467889999996554432 22357889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC-CcEEE
Q psy1873 71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK-AGFVE 149 (157)
Q Consensus 71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e 149 (157)
+++.|.++.-. .-.+++.+.+.. .. .|++++.||.|..............+..... ...++
T Consensus 90 lfvvd~~~~~~--~~d~~il~~lk~---~~-------------~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivp 151 (298)
T COG1159 90 LFVVDADEGWG--PGDEFILEQLKK---TK-------------TPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVP 151 (298)
T ss_pred EEEEeccccCC--ccHHHHHHHHhh---cC-------------CCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEE
Confidence 99999987432 233333333333 12 8999999999986654422233333333333 38999
Q ss_pred eccccCCC
Q psy1873 150 ASAKQDDY 157 (157)
Q Consensus 150 ~Sa~~~~~ 157 (157)
+||++|.|
T Consensus 152 iSA~~g~n 159 (298)
T COG1159 152 ISALKGDN 159 (298)
T ss_pred eeccccCC
Confidence 99999986
No 196
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.75 E-value=9.1e-18 Score=115.46 Aligned_cols=95 Identities=21% Similarity=0.268 Sum_probs=64.6
Q ss_pred EEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh----hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEE
Q psy1873 43 YDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH----KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL 118 (157)
Q Consensus 43 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~----~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~v 118 (157)
..+.+||+||++++.......+..+|++++|+|++++ .+.+.+.. + .... . .|++|
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~----~-~~~~--~-------------~~iii 142 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAA----L-EIMG--L-------------KHIII 142 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHH----H-HHcC--C-------------CcEEE
Confidence 5789999999988877777777888999999999874 22332221 2 1111 1 57999
Q ss_pred EEeCCCCCCCcee--cHHHHHHHHHHh---CCcEEEeccccCCC
Q psy1873 119 VGNKKDLHMERMI--SYDEGKRLAESW---KAGFVEASAKQDDY 157 (157)
Q Consensus 119 v~nK~Dl~~~~~~--~~~~~~~~~~~~---~~~~~e~Sa~~~~~ 157 (157)
++||.|+...... ..++...++... +++++++||++|+|
T Consensus 143 vvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~g 186 (203)
T cd01888 143 VQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYN 186 (203)
T ss_pred EEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCC
Confidence 9999998653221 112333433332 57899999999986
No 197
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.75 E-value=5.5e-18 Score=128.27 Aligned_cols=141 Identities=17% Similarity=0.126 Sum_probs=89.3
Q ss_pred CCCCCCChhhhHhhhhc--cccccc-----------------------------ccCCccceEEEEEEECCeEEEEEEEe
Q psy1873 1 MGYRSVGKSSLSIQFVD--GQFVDS-----------------------------YDPTIENTFVKTTRMNNQDYDLKLVD 49 (157)
Q Consensus 1 vG~~~~GKssli~~~~~--~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~~~~i~D 49 (157)
+|..++|||||+.+|+. +..... ...++.... ....+....+.+.+||
T Consensus 13 ~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~-~~~~~~~~~~~i~iiD 91 (426)
T TIGR00483 13 IGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDV-AHWKFETDKYEVTIVD 91 (426)
T ss_pred EeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEE-EEEEEccCCeEEEEEE
Confidence 69999999999999975 211100 001111111 1122333456789999
Q ss_pred CCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q psy1873 50 TAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME 128 (157)
Q Consensus 50 ~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~ 128 (157)
++|+++|.......+..+|++|+|+|+++.+++.... .+...+..... . .|++|++||+|+.+.
T Consensus 92 tpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~--~-------------~~iIVviNK~Dl~~~ 156 (426)
T TIGR00483 92 CPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG--I-------------NQLIVAINKMDSVNY 156 (426)
T ss_pred CCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC--C-------------CeEEEEEEChhccCc
Confidence 9999888665555678899999999999885432111 11112222221 1 579999999998642
Q ss_pred ce----ecHHHHHHHHHHhC-----CcEEEeccccCCC
Q psy1873 129 RM----ISYDEGKRLAESWK-----AGFVEASAKQDDY 157 (157)
Q Consensus 129 ~~----~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~ 157 (157)
.+ ...++...+++..+ ++++++||++|+|
T Consensus 157 ~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~n 194 (426)
T TIGR00483 157 DEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDN 194 (426)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccc
Confidence 22 22345666777665 5799999999986
No 198
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.75 E-value=2.1e-17 Score=129.10 Aligned_cols=137 Identities=20% Similarity=0.181 Sum_probs=93.9
Q ss_pred CCCCCCChhhhHhhhhccc--cc-----cccc------CCccceE-EE--EEEE---CCeEEEEEEEeCCCCccCcCchh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ--FV-----DSYD------PTIENTF-VK--TTRM---NNQDYDLKLVDTAGQDEYSIFPA 61 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~--~~-----~~~~------~t~~~~~-~~--~~~~---~~~~~~~~i~D~~g~~~~~~~~~ 61 (157)
||..++|||||+.+|+... +. ..+. .+.+..+ .. .+.+ +++.+.+.+|||||+.+|...+.
T Consensus 13 iGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~~~v~ 92 (600)
T PRK05433 13 IAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFSYEVS 92 (600)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHHHHHH
Confidence 6999999999999998531 11 0110 1112222 11 1222 56678899999999999999899
Q ss_pred hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH
Q psy1873 62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE 141 (157)
Q Consensus 62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~ 141 (157)
.++..+|++|+|+|.++....+....|.... . .. +|+++|+||+|+.... .......+.+
T Consensus 93 ~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~----~~-------------lpiIvViNKiDl~~a~--~~~v~~ei~~ 152 (600)
T PRK05433 93 RSLAACEGALLVVDASQGVEAQTLANVYLAL-E----ND-------------LEIIPVLNKIDLPAAD--PERVKQEIED 152 (600)
T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CC-------------CCEEEEEECCCCCccc--HHHHHHHHHH
Confidence 9999999999999999876655554443221 1 12 8999999999985432 1222344555
Q ss_pred HhCCc---EEEeccccCCC
Q psy1873 142 SWKAG---FVEASAKQDDY 157 (157)
Q Consensus 142 ~~~~~---~~e~Sa~~~~~ 157 (157)
.+++. ++++||++|+|
T Consensus 153 ~lg~~~~~vi~iSAktG~G 171 (600)
T PRK05433 153 VIGIDASDAVLVSAKTGIG 171 (600)
T ss_pred HhCCCcceEEEEecCCCCC
Confidence 56664 89999999986
No 199
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.75 E-value=1.7e-17 Score=125.55 Aligned_cols=141 Identities=16% Similarity=0.112 Sum_probs=87.1
Q ss_pred CCCCCCChhhhHhhhhcccc--cc-----------------------------cccCCccceEEEEEEECCeEEEEEEEe
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--VD-----------------------------SYDPTIENTFVKTTRMNNQDYDLKLVD 49 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~~i~D 49 (157)
+|.+++|||||+++|+...- .. +....+... .....++...+.+.+||
T Consensus 12 iGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d-~~~~~~~~~~~~i~liD 90 (425)
T PRK12317 12 IGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTID-LAHKKFETDKYYFTIVD 90 (425)
T ss_pred ECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccce-eeeEEEecCCeEEEEEE
Confidence 69999999999999983211 00 001111101 11122333457789999
Q ss_pred CCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc
Q psy1873 50 TAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER 129 (157)
Q Consensus 50 ~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~ 129 (157)
+||+++|.......+..+|++|+|+|.+++.++.....++..+..... . .|++|++||+|+....
T Consensus 91 tpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~--~-------------~~iivviNK~Dl~~~~ 155 (425)
T PRK12317 91 CPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG--I-------------NQLIVAINKMDAVNYD 155 (425)
T ss_pred CCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC--C-------------CeEEEEEEcccccccc
Confidence 999988866544556889999999999874233222222223332221 1 4699999999986421
Q ss_pred e----ecHHHHHHHHHHhC-----CcEEEeccccCCC
Q psy1873 130 M----ISYDEGKRLAESWK-----AGFVEASAKQDDY 157 (157)
Q Consensus 130 ~----~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~ 157 (157)
. ...++...++...+ ++++++||++|+|
T Consensus 156 ~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~g 192 (425)
T PRK12317 156 EKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDN 192 (425)
T ss_pred HHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCC
Confidence 1 12344555665555 4799999999986
No 200
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.74 E-value=1.9e-17 Score=114.27 Aligned_cols=99 Identities=17% Similarity=0.116 Sum_probs=64.8
Q ss_pred EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEe
Q psy1873 42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN 121 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~n 121 (157)
...+.+|||||+.+|.......+..+|++|+|+|.++...-+ .... ..+..... . .++++|+|
T Consensus 76 ~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~-~~~~~~~~--~-------------~~iIvviN 138 (208)
T cd04166 76 KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRH-SYILSLLG--I-------------RHVVVAVN 138 (208)
T ss_pred CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHH-HHHHHHcC--C-------------CcEEEEEE
Confidence 346789999999887665566788999999999998753211 1111 12222221 0 45788999
Q ss_pred CCCCCCCce----ecHHHHHHHHHHhCC---cEEEeccccCCC
Q psy1873 122 KKDLHMERM----ISYDEGKRLAESWKA---GFVEASAKQDDY 157 (157)
Q Consensus 122 K~Dl~~~~~----~~~~~~~~~~~~~~~---~~~e~Sa~~~~~ 157 (157)
|+|+..... ....+...+...+++ +++.+||++|+|
T Consensus 139 K~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~n 181 (208)
T cd04166 139 KMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDN 181 (208)
T ss_pred chhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCC
Confidence 999854221 112345555666664 589999999986
No 201
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.74 E-value=4.1e-17 Score=130.17 Aligned_cols=132 Identities=20% Similarity=0.155 Sum_probs=82.2
Q ss_pred CCCCCCChhhhHhhhhccccc-ccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccC--------cCchhhhccCCCEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEY--------SIFPAQYSMDIHGY 70 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~~~~~~~~ 70 (157)
+|.+|||||||+|+|++.... ....+++. +........++ ..+.+|||+|.... ......++..+|++
T Consensus 281 vG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~i 358 (712)
T PRK09518 281 VGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAV 358 (712)
T ss_pred ECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEE
Confidence 699999999999999987541 12223222 22233344445 45788999997642 12234567899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEE
Q psy1873 71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVE 149 (157)
Q Consensus 71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e 149 (157)
|+|+|.++. +......+...+.. .. .|+++|+||+|+.... ......+ .++. ..++
T Consensus 359 L~VvDa~~~--~~~~d~~i~~~Lr~---~~-------------~pvIlV~NK~D~~~~~---~~~~~~~--~lg~~~~~~ 415 (712)
T PRK09518 359 VFVVDGQVG--LTSTDERIVRMLRR---AG-------------KPVVLAVNKIDDQASE---YDAAEFW--KLGLGEPYP 415 (712)
T ss_pred EEEEECCCC--CCHHHHHHHHHHHh---cC-------------CCEEEEEECcccccch---hhHHHHH--HcCCCCeEE
Confidence 999999763 22222222222222 12 9999999999985421 1112222 2343 4679
Q ss_pred eccccCCC
Q psy1873 150 ASAKQDDY 157 (157)
Q Consensus 150 ~Sa~~~~~ 157 (157)
+||++|.|
T Consensus 416 iSA~~g~G 423 (712)
T PRK09518 416 ISAMHGRG 423 (712)
T ss_pred EECCCCCC
Confidence 99999986
No 202
>KOG1707|consensus
Probab=99.73 E-value=6.9e-18 Score=127.39 Aligned_cols=145 Identities=19% Similarity=0.246 Sum_probs=107.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|+.||||||||..++...|++.-.+-. ..+.....+....+...|.|++....-+......++.+|+++++|++++++
T Consensus 15 iGD~G~GKtSLImSL~~eef~~~VP~rl-~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~ 93 (625)
T KOG1707|consen 15 IGDEGVGKTSLIMSLLEEEFVDAVPRRL-PRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDES 93 (625)
T ss_pred ECCCCccHHHHHHHHHhhhccccccccC-CccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChH
Confidence 6999999999999999998876654333 333222445555566899999877776667788889999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHH-HHHHHHHhC-C-cEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDE-GKRLAESWK-A-GFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~-~~~~~~~~~-~-~~~e~Sa~~~~~ 157 (157)
+++.+...|..+.+..... ...+|+|+||||+|.......+.+. ...+..++. + .++||||++..|
T Consensus 94 T~D~ist~WLPlir~~~~~-----------~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n 162 (625)
T KOG1707|consen 94 TVDRISTKWLPLIRQLFGD-----------YHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLAN 162 (625)
T ss_pred HhhhhhhhhhhhhhcccCC-----------CccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhh
Confidence 9999976666666555432 2349999999999986654443333 445555554 4 799999998653
No 203
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.71 E-value=6.9e-17 Score=107.13 Aligned_cols=134 Identities=19% Similarity=0.199 Sum_probs=82.7
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCcc----------CcCchhhhccC---
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDE----------YSIFPAQYSMD--- 66 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~~--- 66 (157)
+|++|+|||||+++++++.+.....++.+... ......++ .+.+||++|... +..+...++..
T Consensus 5 ~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (170)
T cd01876 5 AGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENREN 81 (170)
T ss_pred EcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChh
Confidence 69999999999999997666555555555332 22223332 678999998433 33444445543
Q ss_pred CCEEEEEEECCChhh--HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec--HHHHHHHHH-
Q psy1873 67 IHGYVLVYSITSHKS--FEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS--YDEGKRLAE- 141 (157)
Q Consensus 67 ~~~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~--~~~~~~~~~- 141 (157)
.+++++++|.++..+ ...+..|+.. . . .|+++++||+|+....... ........+
T Consensus 82 ~~~~~~v~d~~~~~~~~~~~~~~~l~~----~---~-------------~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~ 141 (170)
T cd01876 82 LKGVVLLIDSRHGPTEIDLEMLDWLEE----L---G-------------IPFLVVLTKADKLKKSELAKALKEIKKELKL 141 (170)
T ss_pred hhEEEEEEEcCcCCCHhHHHHHHHHHH----c---C-------------CCEEEEEEchhcCChHHHHHHHHHHHHHHHh
Confidence 467888988876532 2223333322 1 1 8899999999985432211 112222222
Q ss_pred -HhCCcEEEeccccCCC
Q psy1873 142 -SWKAGFVEASAKQDDY 157 (157)
Q Consensus 142 -~~~~~~~e~Sa~~~~~ 157 (157)
....+++++||+++.|
T Consensus 142 ~~~~~~~~~~Sa~~~~~ 158 (170)
T cd01876 142 FEIDPPIILFSSLKGQG 158 (170)
T ss_pred ccCCCceEEEecCCCCC
Confidence 2345899999999875
No 204
>PRK10218 GTP-binding protein; Provisional
Probab=99.70 E-value=2.9e-16 Score=122.52 Aligned_cols=138 Identities=20% Similarity=0.166 Sum_probs=93.8
Q ss_pred CCCCCCChhhhHhhhhc--ccccccc------------cCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVD--GQFVDSY------------DPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM 65 (157)
Q Consensus 1 vG~~~~GKssli~~~~~--~~~~~~~------------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 65 (157)
+|..++|||||+.+|+. +.+.... ..+.+..+ .....+....+.+.+||++|+.+|...+..+++
T Consensus 11 iGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~ 90 (607)
T PRK10218 11 IAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMS 90 (607)
T ss_pred ECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHH
Confidence 69999999999999986 3332211 12233333 344455556688999999999999999999999
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHH---
Q psy1873 66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM-ISYDEGKRLAE--- 141 (157)
Q Consensus 66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~-~~~~~~~~~~~--- 141 (157)
.+|++|+|+|.++.... ....++..+... . +|.++++||+|+...+. -..++...+..
T Consensus 91 ~aDg~ILVVDa~~G~~~-qt~~~l~~a~~~----g-------------ip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~ 152 (607)
T PRK10218 91 MVDSVLLVVDAFDGPMP-QTRFVTKKAFAY----G-------------LKPIVVINKVDRPGARPDWVVDQVFDLFVNLD 152 (607)
T ss_pred hCCEEEEEEecccCccH-HHHHHHHHHHHc----C-------------CCEEEEEECcCCCCCchhHHHHHHHHHHhccC
Confidence 99999999999875332 233344443332 2 88999999999864322 11223333321
Q ss_pred ----HhCCcEEEeccccCC
Q psy1873 142 ----SWKAGFVEASAKQDD 156 (157)
Q Consensus 142 ----~~~~~~~e~Sa~~~~ 156 (157)
...+|++.+||++|.
T Consensus 153 ~~~~~~~~PVi~~SA~~G~ 171 (607)
T PRK10218 153 ATDEQLDFPIVYASALNGI 171 (607)
T ss_pred ccccccCCCEEEeEhhcCc
Confidence 234789999999986
No 205
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.70 E-value=1.1e-16 Score=110.96 Aligned_cols=108 Identities=22% Similarity=0.196 Sum_probs=74.2
Q ss_pred CCCCCCChhhhHhhhhccccccc-----------ccCC------ccceE---EEEEEE---CCeEEEEEEEeCCCCccCc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDS-----------YDPT------IENTF---VKTTRM---NNQDYDLKLVDTAGQDEYS 57 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~-----------~~~t------~~~~~---~~~~~~---~~~~~~~~i~D~~g~~~~~ 57 (157)
+|+.++|||||+.+|+....... +..+ .+..+ ...+.. ++..+.+.+||++|+.+|.
T Consensus 6 iG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~~~f~ 85 (213)
T cd04167 6 AGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGHVNFM 85 (213)
T ss_pred EcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCCcchH
Confidence 69999999999999986543211 1111 11111 111111 3557889999999999998
Q ss_pred CchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873 58 IFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH 126 (157)
Q Consensus 58 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~ 126 (157)
.....++..+|++++|+|.++..+... ..++..... .. .|+++++||+|+.
T Consensus 86 ~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~-------------~p~iiviNK~D~~ 136 (213)
T cd04167 86 DEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EG-------------LPIVLVINKIDRL 136 (213)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cC-------------CCEEEEEECcccC
Confidence 888888999999999999988766532 233333221 12 8999999999974
No 206
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.70 E-value=2.8e-16 Score=116.73 Aligned_cols=131 Identities=24% Similarity=0.245 Sum_probs=93.9
Q ss_pred CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCch--------hhhccCCCEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP--------AQYSMDIHGY 70 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~~~~~~~ 70 (157)
+|.||||||||+|.|++... +.....|+++.....+.++| +.+++.||+|-....... ...++.+|.+
T Consensus 223 iG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlv 300 (454)
T COG0486 223 IGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLV 300 (454)
T ss_pred ECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEE
Confidence 69999999999999998766 45666777787788889988 667899999976655432 3457889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEe
Q psy1873 71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEA 150 (157)
Q Consensus 71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 150 (157)
++++|.+.+.+-+... +....... .|+++|.||.|+......... ....+.+++.+
T Consensus 301 L~v~D~~~~~~~~d~~-----~~~~~~~~--------------~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~i 356 (454)
T COG0486 301 LFVLDASQPLDKEDLA-----LIELLPKK--------------KPIIVVLNKADLVSKIELESE-----KLANGDAIISI 356 (454)
T ss_pred EEEEeCCCCCchhhHH-----HHHhcccC--------------CCEEEEEechhcccccccchh-----hccCCCceEEE
Confidence 9999999862222111 11112111 899999999999764432111 22234579999
Q ss_pred ccccCCC
Q psy1873 151 SAKQDDY 157 (157)
Q Consensus 151 Sa~~~~~ 157 (157)
||++|+|
T Consensus 357 Sa~t~~G 363 (454)
T COG0486 357 SAKTGEG 363 (454)
T ss_pred EecCccC
Confidence 9999986
No 207
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.70 E-value=2.3e-16 Score=123.51 Aligned_cols=134 Identities=18% Similarity=0.180 Sum_probs=86.4
Q ss_pred CCCCCCChhhhHhhhhcc---cccccc--cCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDG---QFVDSY--DPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYS 75 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~---~~~~~~--~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d 75 (157)
+|..++|||||+++|.+. .+..+. -.|+...|......++ ..+.+||+||+++|.......+.++|++++|+|
T Consensus 6 ~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVd 83 (614)
T PRK10512 6 AGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVA 83 (614)
T ss_pred ECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEE
Confidence 599999999999999853 222222 2222222221111233 347899999999987666666889999999999
Q ss_pred CCC---hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEEEEeCCCCCCCcee--cHHHHHHHHHHhC---Cc
Q psy1873 76 ITS---HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVLVGNKKDLHMERMI--SYDEGKRLAESWK---AG 146 (157)
Q Consensus 76 ~~~---~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~vv~nK~Dl~~~~~~--~~~~~~~~~~~~~---~~ 146 (157)
.++ +.+.+.+. ++.... +| ++||+||+|+.+...+ ..++...+....+ ++
T Consensus 84 a~eg~~~qT~ehl~-----il~~lg----------------i~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ 142 (614)
T PRK10512 84 CDDGVMAQTREHLA-----ILQLTG----------------NPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAK 142 (614)
T ss_pred CCCCCcHHHHHHHH-----HHHHcC----------------CCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 887 33333332 222221 44 6799999998653222 1234455555444 68
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
++++||++|+|
T Consensus 143 ii~VSA~tG~g 153 (614)
T PRK10512 143 LFVTAATEGRG 153 (614)
T ss_pred EEEEeCCCCCC
Confidence 99999999986
No 208
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.70 E-value=1.2e-16 Score=124.60 Aligned_cols=138 Identities=20% Similarity=0.188 Sum_probs=93.6
Q ss_pred CCCCCCChhhhHhhhhcc--cccccc------------cCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG--QFVDSY------------DPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM 65 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~--~~~~~~------------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 65 (157)
||..++|||||+.+|+.. .+.... ....+.+. .....+....+.+.+|||||+.+|......+++
T Consensus 7 iGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~ 86 (594)
T TIGR01394 7 IAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLG 86 (594)
T ss_pred EcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHH
Confidence 699999999999999852 221111 01112222 233334445578899999999999988899999
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCcee-cHHHHHHHH----
Q psy1873 66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMI-SYDEGKRLA---- 140 (157)
Q Consensus 66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~-~~~~~~~~~---- 140 (157)
.+|++++|+|.++. ...+...|+..+.... +|++|++||+|+...+.. ..++...+.
T Consensus 87 ~aD~alLVVDa~~G-~~~qT~~~l~~a~~~~-----------------ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g 148 (594)
T TIGR01394 87 MVDGVLLLVDASEG-PMPQTRFVLKKALELG-----------------LKPIVVINKIDRPSARPDEVVDEVFDLFAELG 148 (594)
T ss_pred hCCEEEEEEeCCCC-CcHHHHHHHHHHHHCC-----------------CCEEEEEECCCCCCcCHHHHHHHHHHHHHhhc
Confidence 99999999999864 3344556666655432 899999999998653321 123333333
Q ss_pred ---HHhCCcEEEeccccCC
Q psy1873 141 ---ESWKAGFVEASAKQDD 156 (157)
Q Consensus 141 ---~~~~~~~~e~Sa~~~~ 156 (157)
++..++++.+||++|.
T Consensus 149 ~~~e~l~~pvl~~SA~~g~ 167 (594)
T TIGR01394 149 ADDEQLDFPIVYASGRAGW 167 (594)
T ss_pred cccccccCcEEechhhcCc
Confidence 2235789999999984
No 209
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.69 E-value=2.7e-16 Score=122.55 Aligned_cols=105 Identities=21% Similarity=0.240 Sum_probs=72.2
Q ss_pred CCCCCCChhhhHhhhhcccccccc----cCCccceEEEEEEE---CCeEE----------EEEEEeCCCCccCcCchhhh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSY----DPTIENTFVKTTRM---NNQDY----------DLKLVDTAGQDEYSIFPAQY 63 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~----~~t~~~~~~~~~~~---~~~~~----------~~~i~D~~g~~~~~~~~~~~ 63 (157)
+|.+++|||||++++.+..+.... ..+++..+...... .+... .+.+|||||++.|..++...
T Consensus 12 ~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~ 91 (586)
T PRK04004 12 LGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNLRKRG 91 (586)
T ss_pred ECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHHHHHHh
Confidence 699999999999999865443222 22344322111000 01111 16899999999999998888
Q ss_pred ccCCCEEEEEEECCC---hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873 64 SMDIHGYVLVYSITS---HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH 126 (157)
Q Consensus 64 ~~~~~~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~ 126 (157)
+..+|++++|+|.++ +++++.+..+ .. .. +|+++++||+|+.
T Consensus 92 ~~~aD~~IlVvDa~~g~~~qt~e~i~~~-----~~---~~-------------vpiIvviNK~D~~ 136 (586)
T PRK04004 92 GALADIAILVVDINEGFQPQTIEAINIL-----KR---RK-------------TPFVVAANKIDRI 136 (586)
T ss_pred HhhCCEEEEEEECCCCCCHhHHHHHHHH-----HH---cC-------------CCEEEEEECcCCc
Confidence 899999999999997 6666555321 11 12 8999999999984
No 210
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.67 E-value=4.7e-16 Score=108.14 Aligned_cols=101 Identities=17% Similarity=0.115 Sum_probs=64.2
Q ss_pred eEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhh---HH---HHHHHHHHHHHHhccccCCCCCCCCCCCCCC
Q psy1873 41 QDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKS---FE---VVQILYDKLLDMTGKIQNSSVKSPTSCVSSV 114 (157)
Q Consensus 41 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 114 (157)
....+.+||++|+..|.......+..+|++|+|+|.++... |. .....+. +..... . .
T Consensus 75 ~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~~~--~-------------~ 138 (219)
T cd01883 75 EKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LARTLG--V-------------K 138 (219)
T ss_pred CCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHHcC--C-------------C
Confidence 44678999999998777666666788999999999998521 11 1222222 222111 1 6
Q ss_pred cEEEEEeCCCCCCC--ce----ecHHHHHHHHHHhC-----CcEEEeccccCCC
Q psy1873 115 PIVLVGNKKDLHME--RM----ISYDEGKRLAESWK-----AGFVEASAKQDDY 157 (157)
Q Consensus 115 p~~vv~nK~Dl~~~--~~----~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~ 157 (157)
|+++++||.|+... .. ...++...+....+ ++++.+||++|+|
T Consensus 139 ~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~g 192 (219)
T cd01883 139 QLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDN 192 (219)
T ss_pred eEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCC
Confidence 89999999998632 11 11122333334443 5799999999987
No 211
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.67 E-value=8.7e-16 Score=113.84 Aligned_cols=132 Identities=20% Similarity=0.133 Sum_probs=92.6
Q ss_pred CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCc--Cc-------hhhhccCCCE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS--IF-------PAQYSMDIHG 69 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~-------~~~~~~~~~~ 69 (157)
||.||||||||+|||++.+. ...+..++.+..+....+.+.. +.+.||+|-+... .+ ....+..+|+
T Consensus 9 VGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADv 86 (444)
T COG1160 9 VGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAIEEADV 86 (444)
T ss_pred ECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCE
Confidence 69999999999999998876 3455555566667777777755 7899999976433 22 2345788999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEE
Q psy1873 70 YVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFV 148 (157)
Q Consensus 70 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~ 148 (157)
+|||+|.... +...++.+.+++.... .|+++|+||+|-.. .++.....-++|+ ..+
T Consensus 87 ilfvVD~~~G--it~~D~~ia~~Lr~~~----------------kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~ 143 (444)
T COG1160 87 ILFVVDGREG--ITPADEEIAKILRRSK----------------KPVILVVNKIDNLK-----AEELAYEFYSLGFGEPV 143 (444)
T ss_pred EEEEEeCCCC--CCHHHHHHHHHHHhcC----------------CCEEEEEEcccCch-----hhhhHHHHHhcCCCCce
Confidence 9999998653 2223333444444222 99999999999642 2333333445676 789
Q ss_pred EeccccCCC
Q psy1873 149 EASAKQDDY 157 (157)
Q Consensus 149 e~Sa~~~~~ 157 (157)
.+||..|.|
T Consensus 144 ~ISA~Hg~G 152 (444)
T COG1160 144 PISAEHGRG 152 (444)
T ss_pred EeehhhccC
Confidence 999988875
No 212
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.67 E-value=1.2e-15 Score=109.27 Aligned_cols=134 Identities=19% Similarity=0.181 Sum_probs=82.8
Q ss_pred CCCCCCChhhhHhhhhccccccc----------ccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCc------------
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDS----------YDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYS------------ 57 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~----------~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~------------ 57 (157)
+|.+|+|||||+|+|++..+... ..+|+. ..+...+..++..+.+.+|||+|.....
T Consensus 10 vG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~y 89 (276)
T cd01850 10 VGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDY 89 (276)
T ss_pred EcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHH
Confidence 69999999999999998876433 234443 2335555667888899999999943221
Q ss_pred --------------CchhhhccCC--CEEEEEEECCChhhHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEE
Q psy1873 58 --------------IFPAQYSMDI--HGYVLVYSITSHKSFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120 (157)
Q Consensus 58 --------------~~~~~~~~~~--~~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~ 120 (157)
..+...+.+. ++++++++.+. ..+... ...+..+. . . +|+++|+
T Consensus 90 i~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~-~~l~~~D~~~lk~l~----~-~-------------v~vi~Vi 150 (276)
T cd01850 90 IDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTG-HGLKPLDIEFMKRLS----K-R-------------VNIIPVI 150 (276)
T ss_pred HHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCC-CCCCHHHHHHHHHHh----c-c-------------CCEEEEE
Confidence 1122344444 44555555443 223222 22222222 1 2 8999999
Q ss_pred eCCCCCC--CceecHHHHHHHHHHhCCcEEEeccc
Q psy1873 121 NKKDLHM--ERMISYDEGKRLAESWKAGFVEASAK 153 (157)
Q Consensus 121 nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~e~Sa~ 153 (157)
||+|+.. +........++.+..+++++|.....
T Consensus 151 nK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 151 AKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred ECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence 9999854 22334555777788888888866543
No 213
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.66 E-value=1.6e-15 Score=106.54 Aligned_cols=124 Identities=17% Similarity=0.175 Sum_probs=80.7
Q ss_pred CCCCCCChhhhHhhhhcccc--------cccc-----c---CCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--------VDSY-----D---PTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQY 63 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--------~~~~-----~---~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 63 (157)
+|..|+|||||+++|+...- .... . ...+..+ .....+......+.+||+||+.+|......+
T Consensus 5 ~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~ 84 (237)
T cd04168 5 LAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAEVERS 84 (237)
T ss_pred EcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHHHHHH
Confidence 69999999999999975311 0000 0 0111111 2223334455788999999999998888889
Q ss_pred ccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh
Q psy1873 64 SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESW 143 (157)
Q Consensus 64 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~ 143 (157)
++.+|++++|+|.++.... ....++..+... . +|+++++||+|+..... ......+...+
T Consensus 85 l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~----~-------------~P~iivvNK~D~~~a~~--~~~~~~i~~~~ 144 (237)
T cd04168 85 LSVLDGAILVISAVEGVQA-QTRILWRLLRKL----N-------------IPTIIFVNKIDRAGADL--EKVYQEIKEKL 144 (237)
T ss_pred HHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc----C-------------CCEEEEEECccccCCCH--HHHHHHHHHHH
Confidence 9999999999999986543 334444444322 2 89999999999864321 23334444445
Q ss_pred C
Q psy1873 144 K 144 (157)
Q Consensus 144 ~ 144 (157)
+
T Consensus 145 ~ 145 (237)
T cd04168 145 S 145 (237)
T ss_pred C
Confidence 5
No 214
>KOG1489|consensus
Probab=99.66 E-value=2.7e-15 Score=106.43 Aligned_cols=141 Identities=20% Similarity=0.257 Sum_probs=98.6
Q ss_pred CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCc----cCcCchhhhcc---CCCEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQD----EYSIFPAQYSM---DIHGYVL 72 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~---~~~~~il 72 (157)
||-||+|||||++.+...+. +..|..|+-......+.+++.. .+.+-|+||-- .-+.+...|++ .|+.+++
T Consensus 202 VG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~f 280 (366)
T KOG1489|consen 202 VGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLF 280 (366)
T ss_pred ecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhhceEEE
Confidence 79999999999999998766 5566666553333344444443 38899999853 33345445544 5789999
Q ss_pred EEECCCh---hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc-EE
Q psy1873 73 VYSITSH---KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAG-FV 148 (157)
Q Consensus 73 v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~ 148 (157)
|.|++.. +.+++++..+.++..+... +...|.+||+||+|+++. + ......+++.+.-+ ++
T Consensus 281 VvD~s~~~~~~p~~~~~lL~~ELe~yek~------------L~~rp~liVaNKiD~~ea-e--~~~l~~L~~~lq~~~V~ 345 (366)
T KOG1489|consen 281 VVDLSGKQLRNPWQQLQLLIEELELYEKG------------LADRPALIVANKIDLPEA-E--KNLLSSLAKRLQNPHVV 345 (366)
T ss_pred EEECCCcccCCHHHHHHHHHHHHHHHhhh------------hccCceEEEEeccCchhH-H--HHHHHHHHHHcCCCcEE
Confidence 9999988 7778777766666544432 334899999999998532 1 12235666666654 99
Q ss_pred EeccccCCC
Q psy1873 149 EASAKQDDY 157 (157)
Q Consensus 149 e~Sa~~~~~ 157 (157)
++||++++|
T Consensus 346 pvsA~~~eg 354 (366)
T KOG1489|consen 346 PVSAKSGEG 354 (366)
T ss_pred Eeeeccccc
Confidence 999999986
No 215
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.66 E-value=2e-16 Score=107.58 Aligned_cols=138 Identities=20% Similarity=0.188 Sum_probs=86.3
Q ss_pred CCCCCCChhhhHhhhhccccccc--------------------ccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCch
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDS--------------------YDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~--------------------~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 60 (157)
+|+.++|||||+.+|+...-... ..-|+. .....+..+.....+.++|+||+..|....
T Consensus 9 ~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~-~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~ 87 (188)
T PF00009_consen 9 IGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITID-LSFISFEKNENNRKITLIDTPGHEDFIKEM 87 (188)
T ss_dssp EESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSS-SEEEEEEBTESSEEEEEEEESSSHHHHHHH
T ss_pred ECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccc-cccccccccccccceeecccccccceeecc
Confidence 59999999999999985332100 011111 112222212445678999999999988877
Q ss_pred hhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce-ecHHHHH-H
Q psy1873 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM-ISYDEGK-R 138 (157)
Q Consensus 61 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~-~~~~~~~-~ 138 (157)
...+..+|++|+|.|..+.-..+ ..+.+..+.... +|++|+.||+|+...+. ...++.. .
T Consensus 88 ~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~~-----------------~p~ivvlNK~D~~~~~~~~~~~~~~~~ 149 (188)
T PF00009_consen 88 IRGLRQADIAILVVDANDGIQPQ-TEEHLKILRELG-----------------IPIIVVLNKMDLIEKELEEIIEEIKEK 149 (188)
T ss_dssp HHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHTT------------------SEEEEEETCTSSHHHHHHHHHHHHHH
T ss_pred cceecccccceeeeecccccccc-cccccccccccc-----------------cceEEeeeeccchhhhHHHHHHHHHHH
Confidence 77899999999999998764322 222223332222 89999999999862211 1111122 3
Q ss_pred HHHHhC------CcEEEeccccCCC
Q psy1873 139 LAESWK------AGFVEASAKQDDY 157 (157)
Q Consensus 139 ~~~~~~------~~~~e~Sa~~~~~ 157 (157)
+.+..+ ++++.+||++|.|
T Consensus 150 l~~~~~~~~~~~~~vi~~Sa~~g~g 174 (188)
T PF00009_consen 150 LLKEYGENGEEIVPVIPISALTGDG 174 (188)
T ss_dssp HHHHTTSTTTSTEEEEEEBTTTTBT
T ss_pred hccccccCccccceEEEEecCCCCC
Confidence 433332 4799999999986
No 216
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.65 E-value=5.2e-15 Score=109.77 Aligned_cols=137 Identities=24% Similarity=0.165 Sum_probs=95.0
Q ss_pred CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc-----------hhhhccCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF-----------PAQYSMDI 67 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~~~~~~~ 67 (157)
||.||||||||+|++++... ......|+.+.....+..+++.+ .+.||+|..+-... ....+..+
T Consensus 184 iGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~--~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a 261 (444)
T COG1160 184 IGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKY--VLIDTAGIRRKGKITESVEKYSVARTLKAIERA 261 (444)
T ss_pred EeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEE--EEEECCCCCcccccccceEEEeehhhHhHHhhc
Confidence 69999999999999998765 34455566677788888888765 77999995433322 22346778
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH----HHh
Q psy1873 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA----ESW 143 (157)
Q Consensus 68 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~----~~~ 143 (157)
++++++.|.+.+-+-+..+ +........ .+++|+.||+|+.+.+....++.++-. ...
T Consensus 262 ~vvllviDa~~~~~~qD~~-----ia~~i~~~g-------------~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l 323 (444)
T COG1160 262 DVVLLVIDATEGISEQDLR-----IAGLIEEAG-------------RGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFL 323 (444)
T ss_pred CEEEEEEECCCCchHHHHH-----HHHHHHHcC-------------CCeEEEEEccccCCchhhHHHHHHHHHHHHhccc
Confidence 9999999999887655443 222222222 889999999998765433334432222 222
Q ss_pred -CCcEEEeccccCCC
Q psy1873 144 -KAGFVEASAKQDDY 157 (157)
Q Consensus 144 -~~~~~e~Sa~~~~~ 157 (157)
.++.+.+||++|.+
T Consensus 324 ~~a~i~~iSA~~~~~ 338 (444)
T COG1160 324 DFAPIVFISALTGQG 338 (444)
T ss_pred cCCeEEEEEecCCCC
Confidence 26999999999864
No 217
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.65 E-value=2.9e-15 Score=102.31 Aligned_cols=139 Identities=21% Similarity=0.181 Sum_probs=85.4
Q ss_pred CCCCCCChhhhHhhhhccccc------cccc--------CCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV------DSYD--------PTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM 65 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~------~~~~--------~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 65 (157)
+|..++|||||+++|+..... ..+. ...+... ...+.+......+.+.||||+..|.......+.
T Consensus 8 iGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~ 87 (195)
T cd01884 8 IGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKNMITGAA 87 (195)
T ss_pred ECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHHHHHHhh
Confidence 699999999999999853100 0000 0111111 122233334456789999999887766666778
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEEEEeCCCCCCCcee---cHHHHHHHHH
Q psy1873 66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVLVGNKKDLHMERMI---SYDEGKRLAE 141 (157)
Q Consensus 66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~vv~nK~Dl~~~~~~---~~~~~~~~~~ 141 (157)
.+|++++|+|.+..-.- .....+..+. ... +| ++++.||.|+...... ..++...+..
T Consensus 88 ~~D~~ilVvda~~g~~~-~~~~~~~~~~-~~~----------------~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~ 149 (195)
T cd01884 88 QMDGAILVVSATDGPMP-QTREHLLLAR-QVG----------------VPYIVVFLNKADMVDDEELLELVEMEVRELLS 149 (195)
T ss_pred hCCEEEEEEECCCCCcH-HHHHHHHHHH-HcC----------------CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHH
Confidence 89999999998864221 1222222222 221 65 7899999998532221 2234555555
Q ss_pred HhC-----CcEEEeccccCCC
Q psy1873 142 SWK-----AGFVEASAKQDDY 157 (157)
Q Consensus 142 ~~~-----~~~~e~Sa~~~~~ 157 (157)
..+ ++++.+||++|.|
T Consensus 150 ~~g~~~~~v~iipiSa~~g~n 170 (195)
T cd01884 150 KYGFDGDNTPIVRGSALKALE 170 (195)
T ss_pred HhcccccCCeEEEeeCccccC
Confidence 443 6899999999986
No 218
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.65 E-value=6.3e-16 Score=116.35 Aligned_cols=100 Identities=22% Similarity=0.224 Sum_probs=66.6
Q ss_pred EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEe
Q psy1873 42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN 121 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~n 121 (157)
...+.+||+||+++|...+......+|++++|+|.++.....+..+.+..+ .... . .|++|++|
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~g-i--------------~~iIVvvN 142 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIG-I--------------KNIVIVQN 142 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcC-C--------------CeEEEEEE
Confidence 357899999999999877777778899999999999643111222222222 2221 1 56899999
Q ss_pred CCCCCCCcee--cHHHHHHHHHHh---CCcEEEeccccCCC
Q psy1873 122 KKDLHMERMI--SYDEGKRLAESW---KAGFVEASAKQDDY 157 (157)
Q Consensus 122 K~Dl~~~~~~--~~~~~~~~~~~~---~~~~~e~Sa~~~~~ 157 (157)
|+|+.+.... ..++...+.... +++++++||++|+|
T Consensus 143 K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~g 183 (406)
T TIGR03680 143 KIDLVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNAN 183 (406)
T ss_pred ccccCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCC
Confidence 9998653221 123344444433 57899999999987
No 219
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.64 E-value=2.6e-16 Score=105.22 Aligned_cols=114 Identities=25% Similarity=0.364 Sum_probs=74.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEE-CCeEEEEEEEeCCCCccCcCchhh---hccCCCEEEEEEEC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRM-NNQDYDLKLVDTAGQDEYSIFPAQ---YSMDIHGYVLVYSI 76 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~---~~~~~~~~ilv~d~ 76 (157)
+|++|+|||+|+.+|..+.......+. .... ...+ +...-.+.+.|+||+++.+..... +...+.++|+|.|.
T Consensus 9 ~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~--~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDS 85 (181)
T PF09439_consen 9 VGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI--AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDS 85 (181)
T ss_dssp E-STTSSHHHHHHHHHHSS---B---S-SEEE--ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEET
T ss_pred EcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc--eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeC
Confidence 699999999999999998655444333 2211 1112 223446789999999998864333 47789999999999
Q ss_pred C-ChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q psy1873 77 T-SHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME 128 (157)
Q Consensus 77 ~-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~ 128 (157)
+ .+.++.++.+++-.++....... ..+|++|++||+|+...
T Consensus 86 s~~~~~~~~~Ae~Ly~iL~~~~~~~-----------~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 86 STDQKELRDVAEYLYDILSDTEVQK-----------NKPPILIACNKQDLFTA 127 (181)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHCCT-----------T--EEEEEEE-TTSTT-
T ss_pred ccchhhHHHHHHHHHHHHHhhhhcc-----------CCCCEEEEEeCcccccc
Confidence 7 45667777777777776655221 23999999999998653
No 220
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.63 E-value=8.3e-15 Score=104.53 Aligned_cols=109 Identities=16% Similarity=0.177 Sum_probs=72.1
Q ss_pred CCCCCCChhhhHhhhhcccc-ccc---------ccCCc----------cce-EEEEEEECCeEEEEEEEeCCCCccCcCc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF-VDS---------YDPTI----------ENT-FVKTTRMNNQDYDLKLVDTAGQDEYSIF 59 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~-~~~---------~~~t~----------~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 59 (157)
+|.+|+|||||+++++...- ... ...++ +.. ......+..+.+.+.+|||+|+.+|...
T Consensus 8 vGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~df~~~ 87 (267)
T cd04169 8 ISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHEDFSED 87 (267)
T ss_pred EcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchHHHHH
Confidence 69999999999999974211 000 00011 111 1233344556688899999999988877
Q ss_pred hhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q psy1873 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM 127 (157)
Q Consensus 60 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~ 127 (157)
....++.+|++|+|+|.++.... ....++... .. .. +|+++++||+|+..
T Consensus 88 ~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~-~~---~~-------------~P~iivvNK~D~~~ 137 (267)
T cd04169 88 TYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVC-RL---RG-------------IPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHCCEEEEEEECCCCccH-HHHHHHHHH-Hh---cC-------------CCEEEEEECCccCC
Confidence 77788999999999999875332 223333322 11 12 89999999999854
No 221
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.60 E-value=1.5e-14 Score=111.68 Aligned_cols=134 Identities=19% Similarity=0.166 Sum_probs=96.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcCc-------hhhhc-cCCCEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIF-------PAQYS-MDIHGYV 71 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~-~~~~~~i 71 (157)
+|+||||||||+|++++.......-|.+. +.....+...+ .++++.|.||..+.... ++... .++|+++
T Consensus 9 vGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~iv 86 (653)
T COG0370 9 VGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIV 86 (653)
T ss_pred ecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEE
Confidence 69999999999999998776444334433 33345555555 44799999997665543 22233 4569999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873 72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS 151 (157)
Q Consensus 72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 151 (157)
-|.|.++.+.-- ....++++.. .|++++.|+.|..+.+.+. -+.+++.+.+|+|.+++|
T Consensus 87 nVvDAtnLeRnL---yltlQLlE~g-----------------~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tv 145 (653)
T COG0370 87 NVVDATNLERNL---YLTLQLLELG-----------------IPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTV 145 (653)
T ss_pred EEcccchHHHHH---HHHHHHHHcC-----------------CCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEE
Confidence 999988765422 2333444443 9999999999987655554 347888899999999999
Q ss_pred cccCCC
Q psy1873 152 AKQDDY 157 (157)
Q Consensus 152 a~~~~~ 157 (157)
|++|+|
T Consensus 146 A~~g~G 151 (653)
T COG0370 146 AKRGEG 151 (653)
T ss_pred eecCCC
Confidence 999986
No 222
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.60 E-value=1.1e-14 Score=106.00 Aligned_cols=78 Identities=19% Similarity=0.305 Sum_probs=53.7
Q ss_pred CCCCCCChhhhHhhhhccccc-ccc-----cCCccceEEEE----------------EEECC-eEEEEEEEeCCCC----
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV-DSY-----DPTIENTFVKT----------------TRMNN-QDYDLKLVDTAGQ---- 53 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~-~~~-----~~t~~~~~~~~----------------~~~~~-~~~~~~i~D~~g~---- 53 (157)
||.|+||||||++++++.... ..| .|+++..+... ..+++ +.+.+++||++|.
T Consensus 4 vG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv~ga 83 (318)
T cd01899 4 VGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLVPGA 83 (318)
T ss_pred ECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCCCCc
Confidence 699999999999999987653 222 33333222110 11233 3477999999997
Q ss_pred ccCcCchhhh---ccCCCEEEEEEECCC
Q psy1873 54 DEYSIFPAQY---SMDIHGYVLVYSITS 78 (157)
Q Consensus 54 ~~~~~~~~~~---~~~~~~~ilv~d~~~ 78 (157)
.++..+...+ ++++|++++|+|++.
T Consensus 84 ~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 84 HEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred cchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 5555665554 899999999999973
No 223
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.60 E-value=3.1e-15 Score=94.76 Aligned_cols=107 Identities=24% Similarity=0.290 Sum_probs=76.5
Q ss_pred CCCCCCChhhhHhhhhccccccccc-CCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYD-PTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|+.|+|||+|+.++.+..+...+. +|++ +..+...+.+.++.+++||+.++.
T Consensus 6 ~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~~~~~~ 59 (124)
T smart00010 6 IGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCWRVDDR 59 (124)
T ss_pred ECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEEEccCH
Confidence 6999999999999998877754443 4433 333455667788999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++++.+ |...++..... + .|.++++||.|+.+..++...+.. .|+++||++|+|
T Consensus 60 ~s~~~~--~~~~i~~~~k~-d-------------l~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~ 113 (124)
T smart00010 60 DSADNK--NVPEVLVGNKS-D-------------LPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEE 113 (124)
T ss_pred HHHHHH--hHHHHHhcCCC-C-------------CcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcch
Confidence 999876 76666544322 2 889999999998544444433333 456778888765
No 224
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.60 E-value=5.4e-15 Score=111.35 Aligned_cols=95 Identities=23% Similarity=0.256 Sum_probs=62.2
Q ss_pred EEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh----hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEE
Q psy1873 43 YDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK----SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL 118 (157)
Q Consensus 43 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~----s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~v 118 (157)
..+.+||+||+++|..........+|++++|+|.+++. +.+.+. .+ .... . .|+++
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l-~~~~--i-------------~~iiV 144 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----AL-DIIG--I-------------KNIVI 144 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH----HH-HHcC--C-------------CcEEE
Confidence 57899999999887654444455679999999999643 333222 11 1111 1 46899
Q ss_pred EEeCCCCCCCcee--cHHHHHHHHHHh---CCcEEEeccccCCC
Q psy1873 119 VGNKKDLHMERMI--SYDEGKRLAESW---KAGFVEASAKQDDY 157 (157)
Q Consensus 119 v~nK~Dl~~~~~~--~~~~~~~~~~~~---~~~~~e~Sa~~~~~ 157 (157)
|+||+|+.+.... ..++...++... +.+++++||++|+|
T Consensus 145 VlNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~g 188 (411)
T PRK04000 145 VQNKIDLVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVN 188 (411)
T ss_pred EEEeeccccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcC
Confidence 9999998653322 123344444332 47899999999986
No 225
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.59 E-value=8.3e-15 Score=109.97 Aligned_cols=138 Identities=17% Similarity=0.159 Sum_probs=83.9
Q ss_pred CCCCCCChhhhHhhhhccc-------c-----ccccc--CCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ-------F-----VDSYD--PTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM 65 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~-------~-----~~~~~--~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 65 (157)
+|..++|||||+++|+... + .+... ...+.+. ...+.++.....+.+||+||+++|.........
T Consensus 18 ~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~~~~~~~~ 97 (394)
T TIGR00485 18 IGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAA 97 (394)
T ss_pred EeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHHHHHHHHHh
Confidence 5899999999999997320 0 00000 0011111 222334444567889999999988755444556
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEE-EEEeCCCCCCCceec---HHHHHHHHH
Q psy1873 66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIV-LVGNKKDLHMERMIS---YDEGKRLAE 141 (157)
Q Consensus 66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~-vv~nK~Dl~~~~~~~---~~~~~~~~~ 141 (157)
.+|++++|+|+++....+ ..+.+..+... . +|.+ ++.||+|+.+..... .++...++.
T Consensus 98 ~~D~~ilVvda~~g~~~q-t~e~l~~~~~~----g-------------i~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~ 159 (394)
T TIGR00485 98 QMDGAILVVSATDGPMPQ-TREHILLARQV----G-------------VPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred hCCEEEEEEECCCCCcHH-HHHHHHHHHHc----C-------------CCEEEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 789999999998732222 11222222211 1 6655 689999986532221 235666676
Q ss_pred HhC-----CcEEEeccccCC
Q psy1873 142 SWK-----AGFVEASAKQDD 156 (157)
Q Consensus 142 ~~~-----~~~~e~Sa~~~~ 156 (157)
..+ ++++.+||++|.
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 160 EYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred hcCCCccCccEEECcccccc
Confidence 665 789999999875
No 226
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.59 E-value=7.2e-15 Score=94.43 Aligned_cols=122 Identities=19% Similarity=0.187 Sum_probs=82.5
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCc----cCcCchhhhccCCCEEEEEEEC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQD----EYSIFPAQYSMDIHGYVLVYSI 76 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~~~~ilv~d~ 76 (157)
||+.|||||||+++|.+... .+..|....| .=.+.||||.- .+..-.-....++|.++++.|.
T Consensus 7 iG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~-----------~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da 73 (143)
T PF10662_consen 7 IGPSGSGKTTLAQALNGEEI--RYKKTQAIEY-----------YDNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDA 73 (143)
T ss_pred ECCCCCCHHHHHHHHcCCCC--CcCccceeEe-----------cccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecC
Confidence 69999999999999987543 2222222111 11458999953 2222233345688999999999
Q ss_pred CChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEeccccC
Q psy1873 77 TSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVEASAKQD 155 (157)
Q Consensus 77 ~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~ 155 (157)
+++.+.-. ..+.... . .|++-|.||+|+... ....+.++++.+.-|+ ..|++||.+|
T Consensus 74 t~~~~~~p-----P~fa~~f---~-------------~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~ 131 (143)
T PF10662_consen 74 TEPRSVFP-----PGFASMF---N-------------KPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTG 131 (143)
T ss_pred CCCCccCC-----chhhccc---C-------------CCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCC
Confidence 98765210 0011111 1 899999999999632 3356778888888898 7899999999
Q ss_pred CC
Q psy1873 156 DY 157 (157)
Q Consensus 156 ~~ 157 (157)
+|
T Consensus 132 eG 133 (143)
T PF10662_consen 132 EG 133 (143)
T ss_pred cC
Confidence 87
No 227
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.59 E-value=1.9e-14 Score=99.97 Aligned_cols=116 Identities=20% Similarity=0.203 Sum_probs=75.9
Q ss_pred CCCCCCChhhhHhhhhccccc-ccc-----------------cCCccceEEEEEEEC--------CeEEEEEEEeCCCCc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV-DSY-----------------DPTIENTFVKTTRMN--------NQDYDLKLVDTAGQD 54 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~-~~~-----------------~~t~~~~~~~~~~~~--------~~~~~~~i~D~~g~~ 54 (157)
+|..++|||||+.+|+...-. ... .-|+.. ....+.+. ++.+.+.+|||||+.
T Consensus 6 iGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~-~~~~~~~~~~~~~~~~~~~~~i~iiDTPG~~ 84 (222)
T cd01885 6 IAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKS-SAISLYFEYEEEDKADGNEYLINLIDSPGHV 84 (222)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhcccccc-ceEEEEEecCcccccCCCceEEEEECCCCcc
Confidence 699999999999999743210 000 001110 01112222 447889999999999
Q ss_pred cCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC-CCceecH
Q psy1873 55 EYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH-MERMISY 133 (157)
Q Consensus 55 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~-~~~~~~~ 133 (157)
.|.......++.+|++|+|+|+++....+.. ..+..... .. +|+++++||+|+. .+..++.
T Consensus 85 ~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~----~~-------------~p~ilviNKiD~~~~e~~~~~ 146 (222)
T cd01885 85 DFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK----ER-------------VKPVLVINKIDRLILELKLSP 146 (222)
T ss_pred ccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH----cC-------------CCEEEEEECCCcchhhhcCCH
Confidence 9999999999999999999999987655432 22222221 12 8999999999975 2334443
Q ss_pred HH
Q psy1873 134 DE 135 (157)
Q Consensus 134 ~~ 135 (157)
++
T Consensus 147 ~~ 148 (222)
T cd01885 147 EE 148 (222)
T ss_pred HH
Confidence 33
No 228
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.58 E-value=3.1e-14 Score=102.15 Aligned_cols=143 Identities=20% Similarity=0.194 Sum_probs=93.3
Q ss_pred CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCC----ccCcCchhhhcc---CCCEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQ----DEYSIFPAQYSM---DIHGYVL 72 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~----~~~~~~~~~~~~---~~~~~il 72 (157)
||-|++|||||++.+...+. +..|..|+-...-..+.+.+ .-.|.+-|+||- ..-..+...|++ .+.+++.
T Consensus 165 VG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~h 243 (369)
T COG0536 165 VGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLH 243 (369)
T ss_pred ccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHhhheeEE
Confidence 79999999999999988766 56777776644433344422 335789999984 333445555555 4689999
Q ss_pred EEECCChhh---HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc--E
Q psy1873 73 VYSITSHKS---FEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAG--F 147 (157)
Q Consensus 73 v~d~~~~~s---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~ 147 (157)
+.|++..+. .++......++..+... +.+.|.+||+||+|+....+........+.+..+.. +
T Consensus 244 viD~s~~~~~dp~~~~~~i~~EL~~Y~~~------------L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~ 311 (369)
T COG0536 244 VIDLSPIDGRDPIEDYQTIRNELEKYSPK------------LAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFY 311 (369)
T ss_pred EEecCcccCCCHHHHHHHHHHHHHHhhHH------------hccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcce
Confidence 999996553 44444444444433322 334899999999997554444344455555555543 3
Q ss_pred EEeccccCCC
Q psy1873 148 VEASAKQDDY 157 (157)
Q Consensus 148 ~e~Sa~~~~~ 157 (157)
+ +||.+++|
T Consensus 312 ~-ISa~t~~g 320 (369)
T COG0536 312 L-ISALTREG 320 (369)
T ss_pred e-eehhcccC
Confidence 3 99999875
No 229
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.58 E-value=2.3e-14 Score=102.32 Aligned_cols=134 Identities=22% Similarity=0.211 Sum_probs=87.1
Q ss_pred CCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCcc--CcCchhh------hccC-CCEEE
Q psy1873 2 GYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDE--YSIFPAQ------YSMD-IHGYV 71 (157)
Q Consensus 2 G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~------~~~~-~~~~i 71 (157)
|.||||||||++.+...+. ...|..|+-..+..++..++ .++|+.||||--+ ...+.+. .++. .++++
T Consensus 175 G~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~Il 252 (346)
T COG1084 175 GYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVIL 252 (346)
T ss_pred cCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEE
Confidence 9999999999999998877 57788887766666555555 5789999999422 2222221 1222 36788
Q ss_pred EEEECCChh--hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEE
Q psy1873 72 LVYSITSHK--SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFV 148 (157)
Q Consensus 72 lv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~ 148 (157)
+++|.+..- +.+.-...+.++..... .|+++|.||.|+.+...+. +.......-+. ...
T Consensus 253 F~~D~Se~cgy~lE~Q~~L~~eIk~~f~----------------~p~v~V~nK~D~~~~e~~~--~~~~~~~~~~~~~~~ 314 (346)
T COG1084 253 FLFDPSETCGYSLEEQISLLEEIKELFK----------------APIVVVINKIDIADEEKLE--EIEASVLEEGGEEPL 314 (346)
T ss_pred EEEcCccccCCCHHHHHHHHHHHHHhcC----------------CCeEEEEecccccchhHHH--HHHHHHHhhcccccc
Confidence 999998654 34555566666665553 7999999999987544443 33333333333 345
Q ss_pred EeccccC
Q psy1873 149 EASAKQD 155 (157)
Q Consensus 149 e~Sa~~~ 155 (157)
.+++..+
T Consensus 315 ~~~~~~~ 321 (346)
T COG1084 315 KISATKG 321 (346)
T ss_pred ceeeeeh
Confidence 5555443
No 230
>PRK12735 elongation factor Tu; Reviewed
Probab=99.57 E-value=1.9e-14 Score=108.04 Aligned_cols=139 Identities=17% Similarity=0.136 Sum_probs=83.6
Q ss_pred CCCCCCChhhhHhhhhcc-------ccc-----ccc--cCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG-------QFV-----DSY--DPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM 65 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~-------~~~-----~~~--~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 65 (157)
+|..++|||||+++|+.. .+. +.. ....+.+. .....+......+.++|+||+++|.......+.
T Consensus 18 iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~ 97 (396)
T PRK12735 18 IGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAA 97 (396)
T ss_pred ECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHHHHHhhhc
Confidence 699999999999999852 100 000 00111111 112223333456789999999877655556667
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEE-EEEeCCCCCCCce---ecHHHHHHHHH
Q psy1873 66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIV-LVGNKKDLHMERM---ISYDEGKRLAE 141 (157)
Q Consensus 66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~-vv~nK~Dl~~~~~---~~~~~~~~~~~ 141 (157)
.+|++++|+|..+...- ...+.+..+. .. . +|.+ ++.||+|+.+... ....+...+..
T Consensus 98 ~aD~~llVvda~~g~~~-qt~e~l~~~~-~~---g-------------i~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~ 159 (396)
T PRK12735 98 QMDGAILVVSAADGPMP-QTREHILLAR-QV---G-------------VPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred cCCEEEEEEECCCCCch-hHHHHHHHHH-Hc---C-------------CCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 88999999999874322 2222332222 11 1 7755 6799999864221 12234555665
Q ss_pred HhC-----CcEEEeccccCCC
Q psy1873 142 SWK-----AGFVEASAKQDDY 157 (157)
Q Consensus 142 ~~~-----~~~~e~Sa~~~~~ 157 (157)
..+ ++++.+||++|.|
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 160 KYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred HcCCCcCceeEEecchhcccc
Confidence 543 6899999999864
No 231
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.57 E-value=2.5e-14 Score=99.68 Aligned_cols=69 Identities=17% Similarity=0.145 Sum_probs=45.3
Q ss_pred EEEEEEEeCCCCccCcCchhhhc--cCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEE
Q psy1873 42 DYDLKLVDTAGQDEYSIFPAQYS--MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~~~~~~~--~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv 119 (157)
...+.+.|+||+++|.......+ ..+|++++|.|.+.... .....++..+.... +|++++
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~~-----------------ip~ivv 144 (224)
T cd04165 83 SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALALN-----------------IPVFVV 144 (224)
T ss_pred CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHcC-----------------CCEEEE
Confidence 35678999999988865433333 36899999999876533 22223333332221 899999
Q ss_pred EeCCCCCCC
Q psy1873 120 GNKKDLHME 128 (157)
Q Consensus 120 ~nK~Dl~~~ 128 (157)
.||+|+.+.
T Consensus 145 vNK~D~~~~ 153 (224)
T cd04165 145 VTKIDLAPA 153 (224)
T ss_pred EECccccCH
Confidence 999998543
No 232
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.57 E-value=3.2e-14 Score=101.80 Aligned_cols=136 Identities=15% Similarity=0.146 Sum_probs=82.4
Q ss_pred CCCCCCChhhhHhhhhccccccccc------CCc----------cceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYD------PTI----------ENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQY 63 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~------~t~----------~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 63 (157)
+|.+|+|||||+++++...-..... .++ +... .....+....+.+.+||++|+.++.......
T Consensus 5 vG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~ 84 (268)
T cd04170 5 VGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGETRAA 84 (268)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHHHHHH
Confidence 6999999999999997532110000 000 0000 1111222234678999999998888778888
Q ss_pred ccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh
Q psy1873 64 SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESW 143 (157)
Q Consensus 64 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~ 143 (157)
+..+|++++|+|.++........ .+..+.. .. +|+++++||+|+.... .......+...+
T Consensus 85 l~~aD~~i~Vvd~~~g~~~~~~~-~~~~~~~----~~-------------~p~iivvNK~D~~~~~--~~~~~~~l~~~~ 144 (268)
T cd04170 85 LRAADAALVVVSAQSGVEVGTEK-LWEFADE----AG-------------IPRIIFINKMDRERAD--FDKTLAALQEAF 144 (268)
T ss_pred HHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cC-------------CCEEEEEECCccCCCC--HHHHHHHHHHHh
Confidence 99999999999999866543332 2222221 12 8999999999986431 223344455555
Q ss_pred CCcEE--EeccccCC
Q psy1873 144 KAGFV--EASAKQDD 156 (157)
Q Consensus 144 ~~~~~--e~Sa~~~~ 156 (157)
+.+++ .+...+|+
T Consensus 145 ~~~~~~~~ip~~~~~ 159 (268)
T cd04170 145 GRPVVPLQLPIGEGD 159 (268)
T ss_pred CCCeEEEEecccCCC
Confidence 65433 33344443
No 233
>KOG0077|consensus
Probab=99.55 E-value=1.1e-14 Score=94.17 Aligned_cols=111 Identities=20% Similarity=0.297 Sum_probs=89.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|-.|+|||||++.+.+.+. ..+.||...+ ...+.+.+ ..+.-+|.+|+..-+..|..++..++++++.+|.-|.+
T Consensus 26 lGLDNAGKTTLLHMLKdDrl-~qhvPTlHPT-SE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~e 101 (193)
T KOG0077|consen 26 LGLDNAGKTTLLHMLKDDRL-GQHVPTLHPT-SEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQE 101 (193)
T ss_pred EeecCCchhhHHHHHccccc-cccCCCcCCC-hHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHH
Confidence 48899999999999987654 3455665532 22345555 56788999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME 128 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~ 128 (157)
.|.+.+..+..++....-.. +|+++.+||+|.+..
T Consensus 102 r~~es~~eld~ll~~e~la~-------------vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 102 RFAESKKELDALLSDESLAT-------------VPFLILGNKIDIPYA 136 (193)
T ss_pred HhHHHHHHHHHHHhHHHHhc-------------CcceeecccccCCCc
Confidence 99999888888876664333 999999999998543
No 234
>PRK12736 elongation factor Tu; Reviewed
Probab=99.55 E-value=5.4e-14 Score=105.57 Aligned_cols=138 Identities=18% Similarity=0.150 Sum_probs=83.5
Q ss_pred CCCCCCChhhhHhhhhccccc------------cccc--CCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV------------DSYD--PTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM 65 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~------------~~~~--~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 65 (157)
+|..++|||||+.+|++.... +... ...+.+. .....+......+.++|+||+++|......-+.
T Consensus 18 ~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~ 97 (394)
T PRK12736 18 IGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAA 97 (394)
T ss_pred EccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHHHHHHHHh
Confidence 599999999999999853110 0000 0111111 122233334456789999999887665555567
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEEEEeCCCCCCCceec---HHHHHHHHH
Q psy1873 66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVLVGNKKDLHMERMIS---YDEGKRLAE 141 (157)
Q Consensus 66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~vv~nK~Dl~~~~~~~---~~~~~~~~~ 141 (157)
.+|++++|+|.++...-+ ....+..+... . +| ++|+.||+|+.+..... .++...+..
T Consensus 98 ~~d~~llVvd~~~g~~~~-t~~~~~~~~~~----g-------------~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~ 159 (394)
T PRK12736 98 QMDGAILVVAATDGPMPQ-TREHILLARQV----G-------------VPYLVVFLNKVDLVDDEELLELVEMEVRELLS 159 (394)
T ss_pred hCCEEEEEEECCCCCchh-HHHHHHHHHHc----C-------------CCEEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 889999999988642211 12222222221 1 77 67899999986432221 234555555
Q ss_pred HhC-----CcEEEeccccCC
Q psy1873 142 SWK-----AGFVEASAKQDD 156 (157)
Q Consensus 142 ~~~-----~~~~e~Sa~~~~ 156 (157)
..+ ++++.+||++|.
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~ 179 (394)
T PRK12736 160 EYDFPGDDIPVIRGSALKAL 179 (394)
T ss_pred HhCCCcCCccEEEeeccccc
Confidence 555 589999999974
No 235
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.53 E-value=4.4e-14 Score=99.65 Aligned_cols=86 Identities=15% Similarity=0.087 Sum_probs=70.5
Q ss_pred ccCcCchhhhccCCCEEEEEEECCChh-hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec
Q psy1873 54 DEYSIFPAQYSMDIHGYVLVYSITSHK-SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS 132 (157)
Q Consensus 54 ~~~~~~~~~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~ 132 (157)
+++..+.+.+++++|++++|||++++. +++.+.+|+..+.. .. +|++||+||+||.+.+.+.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~-------------i~~vIV~NK~DL~~~~~~~ 86 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QN-------------IEPIIVLNKIDLLDDEDME 86 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CC-------------CCEEEEEECcccCCCHHHH
Confidence 678888889999999999999999888 89999999875532 12 9999999999997655555
Q ss_pred HHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 133 YDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 133 ~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+....+. ..+++++++||++|+|
T Consensus 87 ~~~~~~~~-~~g~~v~~~SAktg~g 110 (245)
T TIGR00157 87 KEQLDIYR-NIGYQVLMTSSKNQDG 110 (245)
T ss_pred HHHHHHHH-HCCCeEEEEecCCchh
Confidence 45555554 4789999999999976
No 236
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.52 E-value=1.3e-13 Score=104.86 Aligned_cols=101 Identities=18% Similarity=0.131 Sum_probs=71.3
Q ss_pred CCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHH-------HHHHHHHHHHHHhccccCCCCCCCCCCC
Q psy1873 39 NNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFE-------VVQILYDKLLDMTGKIQNSSVKSPTSCV 111 (157)
Q Consensus 39 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~-------~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 111 (157)
......+.+.|+||+++|.......+..+|++|+|+|.++ .+|+ ...+.+..+ ....
T Consensus 81 ~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~-~~~g-------------- 144 (447)
T PLN00043 81 ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLA-FTLG-------------- 144 (447)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHH-HHcC--------------
Confidence 3445678999999999999888888899999999999987 3332 333333222 1111
Q ss_pred CCC-cEEEEEeCCCCCCCc--e----ecHHHHHHHHHHhC-----CcEEEeccccCCC
Q psy1873 112 SSV-PIVLVGNKKDLHMER--M----ISYDEGKRLAESWK-----AGFVEASAKQDDY 157 (157)
Q Consensus 112 ~~~-p~~vv~nK~Dl~~~~--~----~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~ 157 (157)
+ +++|++||.|+.+.. + -..++...++...| ++|+++||++|+|
T Consensus 145 --i~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~n 200 (447)
T PLN00043 145 --VKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDN 200 (447)
T ss_pred --CCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccc
Confidence 5 578899999975210 0 12355677777766 6799999999987
No 237
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.52 E-value=7.9e-14 Score=95.49 Aligned_cols=106 Identities=16% Similarity=0.122 Sum_probs=62.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccc-eEE-EEEEEC-CeEEEEEEEeCCCCccCcCchhh-----hccCCCEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIEN-TFV-KTTRMN-NQDYDLKLVDTAGQDEYSIFPAQ-----YSMDIHGYVL 72 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~-~~~-~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~-----~~~~~~~~il 72 (157)
+|++|+|||||+|.+++.........+++. ... ....+. +....+.+||++|.......... .+..+|++++
T Consensus 7 ~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~ 86 (197)
T cd04104 7 TGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFII 86 (197)
T ss_pred ECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEE
Confidence 699999999999999986553322222221 000 000111 11235789999997644332222 3667888888
Q ss_pred EEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873 73 VYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH 126 (157)
Q Consensus 73 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~ 126 (157)
+.+ .++.....++.+.+... . .|+++|+||+|+.
T Consensus 87 v~~----~~~~~~d~~~~~~l~~~---~-------------~~~ilV~nK~D~~ 120 (197)
T cd04104 87 ISS----TRFSSNDVKLAKAIQCM---G-------------KKFYFVRTKVDRD 120 (197)
T ss_pred EeC----CCCCHHHHHHHHHHHHh---C-------------CCEEEEEecccch
Confidence 733 23444443333333333 2 8899999999984
No 238
>CHL00071 tufA elongation factor Tu
Probab=99.51 E-value=1.7e-13 Score=103.37 Aligned_cols=139 Identities=19% Similarity=0.156 Sum_probs=84.4
Q ss_pred CCCCCCChhhhHhhhhccccc------ccccC--------CccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV------DSYDP--------TIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM 65 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~------~~~~~--------t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 65 (157)
+|.+++|||||+++|+...-. ..+.. ..+... .....+......+.+.|+||+.+|.......+.
T Consensus 18 ~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~~~~~~~~ 97 (409)
T CHL00071 18 IGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAA 97 (409)
T ss_pred ECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHHHHHHHHHH
Confidence 599999999999999863110 00000 011111 111223333456789999998877665556677
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEEEEeCCCCCCCcee---cHHHHHHHHH
Q psy1873 66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVLVGNKKDLHMERMI---SYDEGKRLAE 141 (157)
Q Consensus 66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~vv~nK~Dl~~~~~~---~~~~~~~~~~ 141 (157)
.+|++++|+|....-. ......+..+. .. . +| ++++.||.|+.+.... ..++...+..
T Consensus 98 ~~D~~ilVvda~~g~~-~qt~~~~~~~~-~~---g-------------~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~ 159 (409)
T CHL00071 98 QMDGAILVVSAADGPM-PQTKEHILLAK-QV---G-------------VPNIVVFLNKEDQVDDEELLELVELEVRELLS 159 (409)
T ss_pred hCCEEEEEEECCCCCc-HHHHHHHHHHH-Hc---C-------------CCEEEEEEEccCCCCHHHHHHHHHHHHHHHHH
Confidence 8999999999886432 22222232222 21 1 77 7789999998653221 1234555555
Q ss_pred HhC-----CcEEEeccccCCC
Q psy1873 142 SWK-----AGFVEASAKQDDY 157 (157)
Q Consensus 142 ~~~-----~~~~e~Sa~~~~~ 157 (157)
..+ ++++.+||++|.|
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 160 KYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HhCCCCCcceEEEcchhhccc
Confidence 544 6899999999864
No 239
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.51 E-value=1.9e-13 Score=104.68 Aligned_cols=100 Identities=19% Similarity=0.158 Sum_probs=62.4
Q ss_pred eEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEE
Q psy1873 41 QDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120 (157)
Q Consensus 41 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~ 120 (157)
....+.++|+||+++|......-+..+|++++|+|.++.-.-+.... ..+...... .|++|+.
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~--~~l~~~lg~---------------~~iIvvv 167 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH--SFIATLLGI---------------KHLVVAV 167 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH--HHHHHHhCC---------------CceEEEE
Confidence 34578899999998876544444689999999999876422111111 112222211 5789999
Q ss_pred eCCCCCCCceecHH----HHHHHHHHh----CCcEEEeccccCCC
Q psy1873 121 NKKDLHMERMISYD----EGKRLAESW----KAGFVEASAKQDDY 157 (157)
Q Consensus 121 nK~Dl~~~~~~~~~----~~~~~~~~~----~~~~~e~Sa~~~~~ 157 (157)
||+|+...+....+ +...+.... .++++.+||++|+|
T Consensus 168 NKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~n 212 (474)
T PRK05124 168 NKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDN 212 (474)
T ss_pred EeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCC
Confidence 99998642221111 222333333 36899999999987
No 240
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.51 E-value=1.3e-13 Score=98.53 Aligned_cols=132 Identities=14% Similarity=0.154 Sum_probs=79.4
Q ss_pred CCCCCCChhhhHhhhhcccc----c---cc------ccC---CccceE---EEEEEECCeEEEEEEEeCCCCccCcCchh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF----V---DS------YDP---TIENTF---VKTTRMNNQDYDLKLVDTAGQDEYSIFPA 61 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~----~---~~------~~~---t~~~~~---~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 61 (157)
+|.+++|||||+++++...- . .. +.+ ..+... ...+.++ ...+.+|||||+.++...+.
T Consensus 5 vGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~~df~~~~~ 82 (270)
T cd01886 5 IAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK--DHRINIIDTPGHVDFTIEVE 82 (270)
T ss_pred EcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC--CEEEEEEECCCcHHHHHHHH
Confidence 69999999999999973111 0 00 000 001111 2222333 46788999999998888888
Q ss_pred hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH
Q psy1873 62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE 141 (157)
Q Consensus 62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~ 141 (157)
..++.+|++|+|.|.++...-+. ...+..+.. .. +|++++.||+|+..... ......+..
T Consensus 83 ~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~----~~-------------~p~ivviNK~D~~~a~~--~~~~~~l~~ 142 (270)
T cd01886 83 RSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR----YN-------------VPRIAFVNKMDRTGADF--FRVVEQIRE 142 (270)
T ss_pred HHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH----cC-------------CCEEEEEECCCCCCCCH--HHHHHHHHH
Confidence 89999999999999887533221 222332221 12 89999999999864221 111233333
Q ss_pred HhC---C-cEEEecccc
Q psy1873 142 SWK---A-GFVEASAKQ 154 (157)
Q Consensus 142 ~~~---~-~~~e~Sa~~ 154 (157)
.++ + ..+.+||..
T Consensus 143 ~l~~~~~~~~~Pisa~~ 159 (270)
T cd01886 143 KLGANPVPLQLPIGEED 159 (270)
T ss_pred HhCCCceEEEeccccCC
Confidence 333 2 356677654
No 241
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.51 E-value=1.4e-13 Score=106.35 Aligned_cols=125 Identities=14% Similarity=0.125 Sum_probs=77.7
Q ss_pred CCCCCCChhhhHhhhhccc-ccc---c-------------cc---CCccceE-EEEEEECCeEEEEEEEeCCCCccCcCc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ-FVD---S-------------YD---PTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~-~~~---~-------------~~---~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 59 (157)
+|.+++|||||+++|+... ... . +. ...+..+ ...+.++...+.+.+|||||+.+|...
T Consensus 16 iGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~~df~~~ 95 (526)
T PRK00741 16 ISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHEDFSED 95 (526)
T ss_pred ECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCchhhHHH
Confidence 6999999999999996311 000 0 00 0111122 222334445577899999999999887
Q ss_pred hhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHH
Q psy1873 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRL 139 (157)
Q Consensus 60 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~ 139 (157)
....++.+|++|+|+|.++.... ....++... .... +|+++++||+|+.... ..+....+
T Consensus 96 ~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~----~~~~-------------iPiiv~iNK~D~~~a~--~~~~l~~i 155 (526)
T PRK00741 96 TYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC----RLRD-------------TPIFTFINKLDRDGRE--PLELLDEI 155 (526)
T ss_pred HHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH----HhcC-------------CCEEEEEECCcccccC--HHHHHHHH
Confidence 77788999999999999875322 223333322 2222 9999999999985432 22223344
Q ss_pred HHHhCC
Q psy1873 140 AESWKA 145 (157)
Q Consensus 140 ~~~~~~ 145 (157)
...+++
T Consensus 156 ~~~l~~ 161 (526)
T PRK00741 156 EEVLGI 161 (526)
T ss_pred HHHhCC
Confidence 444554
No 242
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.49 E-value=2.5e-13 Score=102.36 Aligned_cols=99 Identities=20% Similarity=0.122 Sum_probs=63.4
Q ss_pred EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEe
Q psy1873 42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN 121 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~n 121 (157)
...+.++|+||+++|.......+..+|++|+|+|......-+... .+ .+...... .+++|+.|
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~-~~-~~~~~~~~---------------~~iivviN 141 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRR-HS-YIASLLGI---------------RHVVLAVN 141 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHH-HH-HHHHHcCC---------------CcEEEEEE
Confidence 457889999999988765555678999999999987653222111 11 12222211 56899999
Q ss_pred CCCCCCCceec----HHHHHHHHHHhC---CcEEEeccccCCC
Q psy1873 122 KKDLHMERMIS----YDEGKRLAESWK---AGFVEASAKQDDY 157 (157)
Q Consensus 122 K~Dl~~~~~~~----~~~~~~~~~~~~---~~~~e~Sa~~~~~ 157 (157)
|+|+.....-. .++...+.+..+ ++++++||++|+|
T Consensus 142 K~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~n 184 (406)
T TIGR02034 142 KMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDN 184 (406)
T ss_pred ecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCC
Confidence 99986422211 122333444444 4799999999986
No 243
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.49 E-value=3.2e-13 Score=94.03 Aligned_cols=137 Identities=18% Similarity=0.181 Sum_probs=78.1
Q ss_pred CCCCCCChhhhHhhhhccccccc---ccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc-----hhhhccCCCEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDS---YDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF-----PAQYSMDIHGYVL 72 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----~~~~~~~~~~~il 72 (157)
+|++++||||+.+.+-.+..+.. ..+|+... ...+.. .....+.+||+|||..+... ....++++.++|+
T Consensus 5 mG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve-~~~v~~-~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIy 82 (232)
T PF04670_consen 5 MGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVE-KSHVRF-LSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIY 82 (232)
T ss_dssp EESTTSSHHHHHHHHHS---GGGGGG-----SEE-EEEEEC-TTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEE
T ss_pred EcCCCCChhhHHHHHHcCCCchhccccCCcCCce-EEEEec-CCCcEEEEEEcCCccccccccccccHHHHHhccCEEEE
Confidence 69999999999888765433211 12444322 222221 22357899999999866543 5778999999999
Q ss_pred EEECCChhh---HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc--ee----cHHHHHHHHHHh
Q psy1873 73 VYSITSHKS---FEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER--MI----SYDEGKRLAESW 143 (157)
Q Consensus 73 v~d~~~~~s---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~--~~----~~~~~~~~~~~~ 143 (157)
|+|+.+.+- +..+...+..+.+..+ .+.+-|...|.|+..+. .. ..++....+...
T Consensus 83 V~D~qs~~~~~~l~~~~~~i~~l~~~sp---------------~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~ 147 (232)
T PF04670_consen 83 VFDAQSDDYDEDLAYLSDCIEALRQYSP---------------NIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDL 147 (232)
T ss_dssp EEETT-STCHHHHHHHHHHHHHHHHHST---------------T-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEcccccHHHHHHHHHHHHHHHHHhCC---------------CCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 999995442 2333344444444333 38899999999986421 11 112234444555
Q ss_pred C---CcEEEecccc
Q psy1873 144 K---AGFVEASAKQ 154 (157)
Q Consensus 144 ~---~~~~e~Sa~~ 154 (157)
+ +.++.||-.+
T Consensus 148 ~~~~~~~~~TSI~D 161 (232)
T PF04670_consen 148 GIEDITFFLTSIWD 161 (232)
T ss_dssp T-TSEEEEEE-TTS
T ss_pred cccceEEEeccCcC
Confidence 5 7788888655
No 244
>PLN03126 Elongation factor Tu; Provisional
Probab=99.49 E-value=2.9e-13 Score=103.46 Aligned_cols=139 Identities=19% Similarity=0.151 Sum_probs=84.9
Q ss_pred CCCCCCChhhhHhhhhccc------ccccc--------cCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ------FVDSY--------DPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM 65 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~------~~~~~--------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 65 (157)
+|..++|||||+++|+... ....+ ....+... .....+......+.++|+||+++|.......+.
T Consensus 87 iGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~ 166 (478)
T PLN03126 87 IGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAA 166 (478)
T ss_pred ECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHHHHHHHHh
Confidence 5999999999999998521 11110 00111111 111122233456789999999988766666677
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEEEEeCCCCCCCcee---cHHHHHHHHH
Q psy1873 66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVLVGNKKDLHMERMI---SYDEGKRLAE 141 (157)
Q Consensus 66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~vv~nK~Dl~~~~~~---~~~~~~~~~~ 141 (157)
.+|++++|+|..+...- ...+++..+.... +| ++|+.||+|+.+.... ..++...+..
T Consensus 167 ~aD~ailVVda~~G~~~-qt~e~~~~~~~~g-----------------i~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~ 228 (478)
T PLN03126 167 QMDGAILVVSGADGPMP-QTKEHILLAKQVG-----------------VPNMVVFLNKQDQVDDEELLELVELEVRELLS 228 (478)
T ss_pred hCCEEEEEEECCCCCcH-HHHHHHHHHHHcC-----------------CCeEEEEEecccccCHHHHHHHHHHHHHHHHH
Confidence 89999999998865332 2233333332221 77 7789999998652221 1224445554
Q ss_pred Hh-----CCcEEEeccccCCC
Q psy1873 142 SW-----KAGFVEASAKQDDY 157 (157)
Q Consensus 142 ~~-----~~~~~e~Sa~~~~~ 157 (157)
.. +++++.+||.+|.|
T Consensus 229 ~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 229 SYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred hcCCCcCcceEEEEEcccccc
Confidence 43 46899999998853
No 245
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.47 E-value=2.6e-13 Score=107.40 Aligned_cols=99 Identities=16% Similarity=0.112 Sum_probs=62.2
Q ss_pred EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEe
Q psy1873 42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN 121 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~n 121 (157)
...+.++|+||+++|.......+..+|++++|+|.++...-+ ....+. +...... .|++|+.|
T Consensus 103 ~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~-~~~~~~~---------------~~iivvvN 165 (632)
T PRK05506 103 KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSF-IASLLGI---------------RHVVLAVN 165 (632)
T ss_pred CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHH-HHHHhCC---------------CeEEEEEE
Confidence 346789999999887654455678899999999987643211 111111 2222211 57889999
Q ss_pred CCCCCCCcee----cHHHHHHHHHHhC---CcEEEeccccCCC
Q psy1873 122 KKDLHMERMI----SYDEGKRLAESWK---AGFVEASAKQDDY 157 (157)
Q Consensus 122 K~Dl~~~~~~----~~~~~~~~~~~~~---~~~~e~Sa~~~~~ 157 (157)
|+|+.+..+- ...+...+....+ ++++.+||++|+|
T Consensus 166 K~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~n 208 (632)
T PRK05506 166 KMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDN 208 (632)
T ss_pred ecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCC
Confidence 9998642211 1122333444555 4699999999986
No 246
>KOG1707|consensus
Probab=99.47 E-value=5.6e-13 Score=101.24 Aligned_cols=135 Identities=21% Similarity=0.311 Sum_probs=102.6
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|+.++|||.+++.|+++.+...+..+....| ...+.+.++...+.+-|.+-. ....+.... ..||+++++||++++
T Consensus 431 ~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~p 508 (625)
T KOG1707|consen 431 VGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSNP 508 (625)
T ss_pred EcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEEecccCCc
Confidence 69999999999999999988777767777655 666666777777888888765 333333333 889999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEeccc
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVEASAK 153 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~ 153 (157)
.+|+.+.......... .. .|++.|++|+|+.+..+...-+..++|+++++ +-...|.+
T Consensus 509 ~sf~~~a~v~~~~~~~---~~-------------~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~ 567 (625)
T KOG1707|consen 509 RSFEYLAEVYNKYFDL---YK-------------IPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSK 567 (625)
T ss_pred hHHHHHHHHHHHhhhc---cC-------------CceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccC
Confidence 9999887665554433 12 99999999999976554333444899999998 45666666
No 247
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.47 E-value=2.3e-13 Score=91.46 Aligned_cols=135 Identities=21% Similarity=0.250 Sum_probs=79.1
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCC----------ccCcCchhhhccC---
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQ----------DEYSIFPAQYSMD--- 66 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~~~~~~~--- 66 (157)
+|.+|||||||+|++++++-......|-|.+. ..-+.+++. +.+.|.||- +....+...|++.
T Consensus 30 ~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~ 106 (200)
T COG0218 30 AGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRAN 106 (200)
T ss_pred EccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchh
Confidence 59999999999999999774433333434222 333344443 688999982 3334444555554
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh---
Q psy1873 67 IHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESW--- 143 (157)
Q Consensus 67 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~--- 143 (157)
-.+++++.|+..+- ..+++.+-+++.... +|++|++||+|........ +.....++.+
T Consensus 107 L~~vvlliD~r~~~--~~~D~em~~~l~~~~----------------i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~ 167 (200)
T COG0218 107 LKGVVLLIDARHPP--KDLDREMIEFLLELG----------------IPVIVVLTKADKLKKSERN-KQLNKVAEELKKP 167 (200)
T ss_pred heEEEEEEECCCCC--cHHHHHHHHHHHHcC----------------CCeEEEEEccccCChhHHH-HHHHHHHHHhcCC
Confidence 24677777876553 333333333333332 9999999999976643332 2222233222
Q ss_pred -CCc--EEEeccccCCC
Q psy1873 144 -KAG--FVEASAKQDDY 157 (157)
Q Consensus 144 -~~~--~~e~Sa~~~~~ 157 (157)
... ++-.|+.++.|
T Consensus 168 ~~~~~~~~~~ss~~k~G 184 (200)
T COG0218 168 PPDDQWVVLFSSLKKKG 184 (200)
T ss_pred CCccceEEEEecccccC
Confidence 222 66677777654
No 248
>COG2262 HflX GTPases [General function prediction only]
Probab=99.47 E-value=1.6e-12 Score=95.49 Aligned_cols=137 Identities=20% Similarity=0.177 Sum_probs=88.1
Q ss_pred CCCCCCChhhhHhhhhccccc-ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC--chh------hhccCCCEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI--FPA------QYSMDIHGYV 71 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--~~~------~~~~~~~~~i 71 (157)
+|..|+|||||+|++++.... .....++-+.....+.+.+ ...+.+-||-|.-+--+ +.. .....+|+++
T Consensus 198 vGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlll 276 (411)
T COG2262 198 VGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLL 276 (411)
T ss_pred EeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEE
Confidence 699999999999999976554 2233343444455555554 23467899998543222 111 1346789999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873 72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS 151 (157)
Q Consensus 72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 151 (157)
.|.|.+++...+++..-.. ++....-.. +|+++|.||.|+..... . ......... ..+.+|
T Consensus 277 hVVDaSdp~~~~~~~~v~~-vL~el~~~~-------------~p~i~v~NKiD~~~~~~-~---~~~~~~~~~-~~v~iS 337 (411)
T COG2262 277 HVVDASDPEILEKLEAVED-VLAEIGADE-------------IPIILVLNKIDLLEDEE-I---LAELERGSP-NPVFIS 337 (411)
T ss_pred EEeecCChhHHHHHHHHHH-HHHHcCCCC-------------CCEEEEEecccccCchh-h---hhhhhhcCC-CeEEEE
Confidence 9999999977666655443 344433222 99999999999755333 1 111111112 479999
Q ss_pred cccCCC
Q psy1873 152 AKQDDY 157 (157)
Q Consensus 152 a~~~~~ 157 (157)
|++|+|
T Consensus 338 A~~~~g 343 (411)
T COG2262 338 AKTGEG 343 (411)
T ss_pred eccCcC
Confidence 999986
No 249
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.46 E-value=1.4e-12 Score=81.88 Aligned_cols=101 Identities=24% Similarity=0.254 Sum_probs=63.8
Q ss_pred CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC---------chhhhccCCCE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI---------FPAQYSMDIHG 69 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~~~~~~~ 69 (157)
+|.+|+|||||+|+|++... .....+++.......+.+++..+ .++|+||-..-.. .....+..+|+
T Consensus 5 iG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ 82 (116)
T PF01926_consen 5 IGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQISKSDL 82 (116)
T ss_dssp EESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHCTESE
T ss_pred ECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHHHCCE
Confidence 69999999999999998543 23333333333345556677554 6999999643211 12223478899
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeC
Q psy1873 70 YVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122 (157)
Q Consensus 70 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK 122 (157)
+++|+|.+++.. +.....+..+ + .. .|+++|.||
T Consensus 83 ii~vv~~~~~~~-~~~~~~~~~l-~----~~-------------~~~i~v~NK 116 (116)
T PF01926_consen 83 IIYVVDASNPIT-EDDKNILREL-K----NK-------------KPIILVLNK 116 (116)
T ss_dssp EEEEEETTSHSH-HHHHHHHHHH-H----TT-------------SEEEEEEES
T ss_pred EEEEEECCCCCC-HHHHHHHHHH-h----cC-------------CCEEEEEcC
Confidence 999999877422 2222222333 1 22 899999998
No 250
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.46 E-value=1.5e-12 Score=103.96 Aligned_cols=133 Identities=13% Similarity=0.086 Sum_probs=82.9
Q ss_pred CCCCCCChhhhHhhhhccccc----cccc--------------CCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcCchh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV----DSYD--------------PTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPA 61 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~----~~~~--------------~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 61 (157)
+|.+++|||||+++|+...-. .... ..+. ......+.++ ...+.+|||||+.++.....
T Consensus 16 iG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~ 93 (689)
T TIGR00484 16 SAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTPGHVDFTVEVE 93 (689)
T ss_pred ECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECCCCcchhHHHH
Confidence 699999999999999732110 0000 0010 1112333343 46789999999999888888
Q ss_pred hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH
Q psy1873 62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE 141 (157)
Q Consensus 62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~ 141 (157)
..++.+|++|+|+|.++....+.. ..+..+... . +|+++++||+|+.... .......+..
T Consensus 94 ~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~~----~-------------~p~ivviNK~D~~~~~--~~~~~~~i~~ 153 (689)
T TIGR00484 94 RSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANRY----E-------------VPRIAFVNKMDKTGAN--FLRVVNQIKQ 153 (689)
T ss_pred HHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHHc----C-------------CCEEEEEECCCCCCCC--HHHHHHHHHH
Confidence 889999999999999886554433 222222211 2 8999999999986533 1222334444
Q ss_pred HhCC----cEEEeccccC
Q psy1873 142 SWKA----GFVEASAKQD 155 (157)
Q Consensus 142 ~~~~----~~~e~Sa~~~ 155 (157)
.++. ..+.+||..+
T Consensus 154 ~l~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 154 RLGANAVPIQLPIGAEDN 171 (689)
T ss_pred HhCCCceeEEeccccCCC
Confidence 4443 2456666554
No 251
>KOG3905|consensus
Probab=99.44 E-value=1.1e-12 Score=93.79 Aligned_cols=154 Identities=13% Similarity=0.075 Sum_probs=102.8
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEEC--CeEEEEEEEeCCCCccCcCchhhhccCC----CEEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMN--NQDYDLKLVDTAGQDEYSIFPAQYSMDI----HGYVLV 73 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~----~~~ilv 73 (157)
+|+.++|||||+.++-+.. .+....+-.| .-.+.-+ +...++.+|-..|......+.+..+... -.+||+
T Consensus 58 lGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlvilt 134 (473)
T KOG3905|consen 58 LGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVILT 134 (473)
T ss_pred EccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEEEEE
Confidence 5999999999999986643 2333334334 2222211 2235678899988877777766665544 378999
Q ss_pred EECCCh-hhHHHHHHHHHHHHHHhccccC-------------------------------CC------CC----------
Q psy1873 74 YSITSH-KSFEVVQILYDKLLDMTGKIQN-------------------------------SS------VK---------- 105 (157)
Q Consensus 74 ~d~~~~-~s~~~~~~~~~~i~~~~~~~~~-------------------------------~~------~~---------- 105 (157)
.|+++| .-++.++.|..-+.++.....- ++ ..
T Consensus 135 asms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~~ 214 (473)
T KOG3905|consen 135 ASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQ 214 (473)
T ss_pred EecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccccccCC
Confidence 999999 4567778887766554432111 00 00
Q ss_pred CCCCCCCCCcEEEEEeCCCCC----CCceecH-------HHHHHHHHHhCCcEEEeccccCCC
Q psy1873 106 SPTSCVSSVPIVLVGNKKDLH----MERMISY-------DEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 106 ~~~~~~~~~p~~vv~nK~Dl~----~~~~~~~-------~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
...+.+..+|++||.+|||.. .+..... ...++||-.+|+..+.+|+|+..|
T Consensus 215 dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KN 277 (473)
T KOG3905|consen 215 DTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKN 277 (473)
T ss_pred cchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccc
Confidence 004567899999999999972 3333222 336889999999999999999876
No 252
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.44 E-value=1.9e-12 Score=92.53 Aligned_cols=148 Identities=20% Similarity=0.160 Sum_probs=97.4
Q ss_pred CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC-------chhhhccCCCEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI-------FPAQYSMDIHGYVL 72 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~~~~il 72 (157)
||+|+||||||++++++.+- ...|..|+.......+.+++ ..+|+.|+||--.-.+ -.-...++||.+|+
T Consensus 69 VGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIii 146 (365)
T COG1163 69 VGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIII 146 (365)
T ss_pred EcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEE
Confidence 69999999999999998766 46677777766677777766 7789999997432222 13345789999999
Q ss_pred EEECCChhh-HHHHHHHHHHHHHHhccccC--------------CC---C-CCC--------------------------
Q psy1873 73 VYSITSHKS-FEVVQILYDKLLDMTGKIQN--------------SS---V-KSP-------------------------- 107 (157)
Q Consensus 73 v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~--------------~~---~-~~~-------------------------- 107 (157)
|.|+....+ .+.+.+.+...--.....+. .. . +..
T Consensus 147 Vld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTl 226 (365)
T COG1163 147 VLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTL 226 (365)
T ss_pred EEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcH
Confidence 999996665 55555544443111111000 00 0 000
Q ss_pred -------CCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 108 -------TSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 108 -------~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
......+|.++|.||.|+.. .++...+.+.. .++.+||+.+.|
T Consensus 227 Dd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~n 276 (365)
T COG1163 227 DDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGIN 276 (365)
T ss_pred HHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCC
Confidence 11134689999999999855 34455555444 688899998865
No 253
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.44 E-value=1.1e-12 Score=101.54 Aligned_cols=109 Identities=15% Similarity=0.240 Sum_probs=71.8
Q ss_pred CCCCCCChhhhHhhhhc-cccccc-------------------ccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCc
Q psy1873 1 MGYRSVGKSSLSIQFVD-GQFVDS-------------------YDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59 (157)
Q Consensus 1 vG~~~~GKssli~~~~~-~~~~~~-------------------~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 59 (157)
||.+++|||||+++|+. ...... .....+..+ ...+.++.+.+.+.+|||||+.+|...
T Consensus 17 iGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG~~df~~~ 96 (527)
T TIGR00503 17 ISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPGHEDFSED 96 (527)
T ss_pred EcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCChhhHHHH
Confidence 69999999999999863 111100 000112222 333445556688999999999988876
Q ss_pred hhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q psy1873 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM 127 (157)
Q Consensus 60 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~ 127 (157)
....+..+|++|+|+|.++.-. .....++. +... .. +|+++++||+|+..
T Consensus 97 ~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~-~~~~---~~-------------~PiivviNKiD~~~ 146 (527)
T TIGR00503 97 TYRTLTAVDNCLMVIDAAKGVE-TRTRKLME-VTRL---RD-------------TPIFTFMNKLDRDI 146 (527)
T ss_pred HHHHHHhCCEEEEEEECCCCCC-HHHHHHHH-HHHh---cC-------------CCEEEEEECccccC
Confidence 6778899999999999987421 12233333 2222 22 89999999999853
No 254
>PRK13351 elongation factor G; Reviewed
Probab=99.44 E-value=7.6e-13 Score=105.72 Aligned_cols=107 Identities=17% Similarity=0.172 Sum_probs=74.7
Q ss_pred CCCCCCChhhhHhhhhcccc-------------cc-------cccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCch
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF-------------VD-------SYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~-------------~~-------~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 60 (157)
+|..++|||||+++|+...- .. .+..|+... ...+.+ ....+.+|||||+.+|....
T Consensus 14 iG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~-~~~~~~--~~~~i~liDtPG~~df~~~~ 90 (687)
T PRK13351 14 LAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESA-ATSCDW--DNHRINLIDTPGHIDFTGEV 90 (687)
T ss_pred ECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccc-eEEEEE--CCEEEEEEECCCcHHHHHHH
Confidence 69999999999999975210 00 011122211 122333 35778999999999998888
Q ss_pred hhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q psy1873 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME 128 (157)
Q Consensus 61 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~ 128 (157)
..+++.+|++++|+|.++....+....| ..+... . +|+++++||+|+...
T Consensus 91 ~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~~----~-------------~p~iiviNK~D~~~~ 140 (687)
T PRK13351 91 ERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADRY----G-------------IPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHhc----C-------------CCEEEEEECCCCCCC
Confidence 9999999999999999987766544333 332221 2 899999999998653
No 255
>KOG1191|consensus
Probab=99.44 E-value=4.7e-13 Score=99.97 Aligned_cols=146 Identities=22% Similarity=0.113 Sum_probs=92.6
Q ss_pred CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCcc-CcC----c----hhhhccCCCE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDE-YSI----F----PAQYSMDIHG 69 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~----~----~~~~~~~~~~ 69 (157)
+|+||||||||+|.|.+.+. ......|+.+.....+.++| +.+.+.||+|-.+ -.. + ....+..+|+
T Consensus 274 vGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~adv 351 (531)
T KOG1191|consen 274 VGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARKRIERADV 351 (531)
T ss_pred EcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHHHHhhcCE
Confidence 69999999999999998766 45555666777778888888 5568899999654 111 1 2234677899
Q ss_pred EEEEEEC--CChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC-ceecHHHHHHHHHHhC--
Q psy1873 70 YVLVYSI--TSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME-RMISYDEGKRLAESWK-- 144 (157)
Q Consensus 70 ~ilv~d~--~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~-~~~~~~~~~~~~~~~~-- 144 (157)
+++++|. ++-++--.+.+.+...-.......+++.+ .|++++.||.|+... ++++..-..+... .+
T Consensus 352 i~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~--------~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~ 422 (531)
T KOG1191|consen 352 ILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEK--------QRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRS 422 (531)
T ss_pred EEEEecccccccccchHHHHHHHHhccceEEEeccccc--------cceEEEechhhccCccccccCCceecccc-ccCc
Confidence 9999998 44444333334343333333333333322 889999999998654 3333211111111 12
Q ss_pred -C-cEEEeccccCCC
Q psy1873 145 -A-GFVEASAKQDDY 157 (157)
Q Consensus 145 -~-~~~e~Sa~~~~~ 157 (157)
. ...++|++|++|
T Consensus 423 ~~~i~~~vs~~tkeg 437 (531)
T KOG1191|consen 423 VFPIVVEVSCTTKEG 437 (531)
T ss_pred ccceEEEeeechhhh
Confidence 3 456689999875
No 256
>KOG1423|consensus
Probab=99.43 E-value=1.2e-12 Score=92.81 Aligned_cols=107 Identities=21% Similarity=0.258 Sum_probs=65.5
Q ss_pred CCCCCCChhhhHhhhhccccccc--ccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC------------chhhhccC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDS--YDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI------------FPAQYSMD 66 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------------~~~~~~~~ 66 (157)
||.||||||||.|.+++.+.... ...|+...... .+......+.++||||--.-.. -....+..
T Consensus 78 IG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilg--i~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~ 155 (379)
T KOG1423|consen 78 IGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILG--IITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQN 155 (379)
T ss_pred EcCCCcchhhhhhHhhCCccccccccccceeeeeeE--EEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhh
Confidence 69999999999999999877432 22233322222 2333446788999999432211 11234567
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873 67 IHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH 126 (157)
Q Consensus 67 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~ 126 (157)
+|.+++++|+++....-.- +.+ ..+..... +|-++|.||.|..
T Consensus 156 AD~vvVv~Das~tr~~l~p-~vl-~~l~~ys~---------------ips~lvmnkid~~ 198 (379)
T KOG1423|consen 156 ADCVVVVVDASATRTPLHP-RVL-HMLEEYSK---------------IPSILVMNKIDKL 198 (379)
T ss_pred CCEEEEEEeccCCcCccCh-HHH-HHHHHHhc---------------CCceeeccchhcc
Confidence 8999999999974322111 111 12222222 8889999999975
No 257
>KOG0090|consensus
Probab=99.43 E-value=3.6e-13 Score=90.82 Aligned_cols=109 Identities=24% Similarity=0.292 Sum_probs=75.6
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhcc---CCCEEEEEEECC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM---DIHGYVLVYSIT 77 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~~~~ilv~d~~ 77 (157)
+|+.+||||+|+.+|..+.+.....+-... ......+. -..++.|.||+.+.+.-...+++ .+.++++|.|..
T Consensus 44 ~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn--~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa 119 (238)
T KOG0090|consen 44 VGLSDSGKTSLFTQLITGSHRGTVTSIEPN--EATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSA 119 (238)
T ss_pred EecCCCCceeeeeehhcCCccCeeeeeccc--eeeEeecC--cceEEEeCCCcHHHHHHHHHHccccccceeEEEEEecc
Confidence 599999999999999987544333221111 12222222 23689999999998876666666 678899998865
Q ss_pred -ChhhHHHHHHHHHHHHHHhc--cccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873 78 -SHKSFEVVQILYDKLLDMTG--KIQNSSVKSPTSCVSSVPIVLVGNKKDLH 126 (157)
Q Consensus 78 -~~~s~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~ 126 (157)
.+.....+..++-.++-... ... +|++|++||.|+.
T Consensus 120 ~f~k~vrdvaefLydil~~~~~~~~~-------------~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 120 TFLKNVRDVAEFLYDILLDSRVKKNK-------------PPVLIACNKQDLF 158 (238)
T ss_pred ccchhhHHHHHHHHHHHHhhccccCC-------------CCEEEEecchhhh
Confidence 45556777777777766653 223 9999999999985
No 258
>PRK00049 elongation factor Tu; Reviewed
Probab=99.41 E-value=2.6e-12 Score=96.59 Aligned_cols=139 Identities=17% Similarity=0.134 Sum_probs=82.5
Q ss_pred CCCCCCChhhhHhhhhccccc------------cccc--CCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV------------DSYD--PTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM 65 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~------------~~~~--~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 65 (157)
+|..++|||||+++|+..... +... ...+.+. .....+......+.+.|+||+.+|.......+.
T Consensus 18 iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~ 97 (396)
T PRK00049 18 IGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAA 97 (396)
T ss_pred EeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHHHHHHhhhc
Confidence 589999999999999863110 0000 0111111 122233334456789999999877665556678
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEE-EEEeCCCCCCCcee---cHHHHHHHHH
Q psy1873 66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIV-LVGNKKDLHMERMI---SYDEGKRLAE 141 (157)
Q Consensus 66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~-vv~nK~Dl~~~~~~---~~~~~~~~~~ 141 (157)
.+|++++|+|.++... ......+..+... . +|.+ |+.||.|+.+.... ...+...+..
T Consensus 98 ~aD~~llVVDa~~g~~-~qt~~~~~~~~~~----g-------------~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~ 159 (396)
T PRK00049 98 QMDGAILVVSAADGPM-PQTREHILLARQV----G-------------VPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred cCCEEEEEEECCCCCc-hHHHHHHHHHHHc----C-------------CCEEEEEEeecCCcchHHHHHHHHHHHHHHHH
Confidence 8999999999886432 2222333322222 1 7875 68999998642221 1223344444
Q ss_pred Hh-----CCcEEEeccccCCC
Q psy1873 142 SW-----KAGFVEASAKQDDY 157 (157)
Q Consensus 142 ~~-----~~~~~e~Sa~~~~~ 157 (157)
.. +++++.+||++|.|
T Consensus 160 ~~~~~~~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 160 KYDFPGDDTPIIRGSALKALE 180 (396)
T ss_pred hcCCCccCCcEEEeecccccC
Confidence 33 36899999998753
No 259
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.41 E-value=2.3e-12 Score=96.45 Aligned_cols=77 Identities=19% Similarity=0.177 Sum_probs=51.8
Q ss_pred CCCCCCChhhhHhhhhcccccc-cccCCccceEEEEEE---------------------ECC-eEEEEEEEeCCCC----
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVD-SYDPTIENTFVKTTR---------------------MNN-QDYDLKLVDTAGQ---- 53 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~-~~~~t~~~~~~~~~~---------------------~~~-~~~~~~i~D~~g~---- 53 (157)
||.||||||||+|++++..... .|..++.+.....+. .++ ..+.+++||++|.
T Consensus 7 vG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl~~ga 86 (396)
T PRK09602 7 VGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAGLVPGA 86 (396)
T ss_pred ECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCCcCCCc
Confidence 6999999999999999876642 343222111111111 111 2367899999994
Q ss_pred ccCcCchhhh---ccCCCEEEEEEECC
Q psy1873 54 DEYSIFPAQY---SMDIHGYVLVYSIT 77 (157)
Q Consensus 54 ~~~~~~~~~~---~~~~~~~ilv~d~~ 77 (157)
.....+...+ ++++|++++|+|..
T Consensus 87 ~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 87 HEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4455566666 88999999999997
No 260
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=8.5e-12 Score=94.32 Aligned_cols=133 Identities=20% Similarity=0.205 Sum_probs=91.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccc-eEEEEEEEC-CeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIEN-TFVKTTRMN-NQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS 78 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~-~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~ 78 (157)
||.---|||||+-.+.+..........+.. ..-+++..+ +..-.+.+.||||++.|..|+..-.+-+|++|||.+++|
T Consensus 11 mGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dD 90 (509)
T COG0532 11 MGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADD 90 (509)
T ss_pred eCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccC
Confidence 588889999999999887665443333331 224444443 122357889999999999999999999999999999987
Q ss_pred h---hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC---------Cc
Q psy1873 79 H---KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK---------AG 146 (157)
Q Consensus 79 ~---~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~ 146 (157)
. +..+.+. +.+.-. +|++|+.||+|..+..+ .....-..++| ..
T Consensus 91 Gv~pQTiEAI~--------hak~a~-------------vP~iVAiNKiDk~~~np---~~v~~el~~~gl~~E~~gg~v~ 146 (509)
T COG0532 91 GVMPQTIEAIN--------HAKAAG-------------VPIVVAINKIDKPEANP---DKVKQELQEYGLVPEEWGGDVI 146 (509)
T ss_pred CcchhHHHHHH--------HHHHCC-------------CCEEEEEecccCCCCCH---HHHHHHHHHcCCCHhhcCCceE
Confidence 4 4444332 111112 99999999999864322 22222222222 57
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
++.+||++|+|
T Consensus 147 ~VpvSA~tg~G 157 (509)
T COG0532 147 FVPVSAKTGEG 157 (509)
T ss_pred EEEeeccCCCC
Confidence 99999999987
No 261
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.39 E-value=8.1e-12 Score=102.30 Aligned_cols=98 Identities=21% Similarity=0.243 Sum_probs=67.0
Q ss_pred CChhhhHhhhhccccccccc----CCccceEEEEEEECC----------------eEEEEEEEeCCCCccCcCchhhhcc
Q psy1873 6 VGKSSLSIQFVDGQFVDSYD----PTIENTFVKTTRMNN----------------QDYDLKLVDTAGQDEYSIFPAQYSM 65 (157)
Q Consensus 6 ~GKssli~~~~~~~~~~~~~----~t~~~~~~~~~~~~~----------------~~~~~~i~D~~g~~~~~~~~~~~~~ 65 (157)
++||||+.++.+........ ..+|..+ +..+. +.-.+.+|||||++.|..+....+.
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~---v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~ 548 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATE---IPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGS 548 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEE---EEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcc
Confidence 57999999998766643322 2333221 22211 0112789999999999988888888
Q ss_pred CCCEEEEEEECCC---hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q psy1873 66 DIHGYVLVYSITS---HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM 127 (157)
Q Consensus 66 ~~~~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~ 127 (157)
.+|++++|+|+++ +++++.+.. +... . +|+++++||+|+..
T Consensus 549 ~aDivlLVVDa~~Gi~~qT~e~I~~-----lk~~---~-------------iPiIVViNKiDL~~ 592 (1049)
T PRK14845 549 LADLAVLVVDINEGFKPQTIEAINI-----LRQY---K-------------TPFVVAANKIDLIP 592 (1049)
T ss_pred cCCEEEEEEECcccCCHhHHHHHHH-----HHHc---C-------------CCEEEEEECCCCcc
Confidence 9999999999987 555554431 1111 2 89999999999853
No 262
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.34 E-value=1.2e-11 Score=94.25 Aligned_cols=102 Identities=16% Similarity=0.109 Sum_probs=65.1
Q ss_pred CCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh---hH---HHHHHHHHHHHHHhccccCCCCCCCCCCCC
Q psy1873 39 NNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK---SF---EVVQILYDKLLDMTGKIQNSSVKSPTSCVS 112 (157)
Q Consensus 39 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 112 (157)
......+.+.|+||+.+|.......+..+|++|+|.|.++.. .| .+..+.+..+. ...
T Consensus 81 ~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~-~~g--------------- 144 (446)
T PTZ00141 81 ETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAF-TLG--------------- 144 (446)
T ss_pred ccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHH-HcC---------------
Confidence 344567899999999998776667778999999999988642 11 12233333222 221
Q ss_pred CCc-EEEEEeCCCCCC--Cce----ecHHHHHHHHHHhC-----CcEEEeccccCCC
Q psy1873 113 SVP-IVLVGNKKDLHM--ERM----ISYDEGKRLAESWK-----AGFVEASAKQDDY 157 (157)
Q Consensus 113 ~~p-~~vv~nK~Dl~~--~~~----~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~ 157 (157)
+| ++|+.||.|... ..+ ...++...+....+ ++++.+||++|+|
T Consensus 145 -i~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~n 200 (446)
T PTZ00141 145 -VKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDN 200 (446)
T ss_pred -CCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCC
Confidence 55 678999999532 111 11223333333333 6899999999987
No 263
>KOG0462|consensus
Probab=99.32 E-value=2.7e-11 Score=91.78 Aligned_cols=101 Identities=24% Similarity=0.164 Sum_probs=75.7
Q ss_pred CCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEE
Q psy1873 39 NNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL 118 (157)
Q Consensus 39 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~v 118 (157)
+++.+.+.++||||+-+|..-...-+..|+++||+.|.+..-.-+.+..++..+... ..++.
T Consensus 121 ~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~------------------L~iIp 182 (650)
T KOG0462|consen 121 DGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAG------------------LAIIP 182 (650)
T ss_pred cCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcC------------------CeEEE
Confidence 367799999999999999998888889999999999998766555555555444322 67999
Q ss_pred EEeCCCCCCCceec-HHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 119 VGNKKDLHMERMIS-YDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 119 v~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
|.||+|++..+.-. ..+...+....+.+.+.+|||+|.|
T Consensus 183 VlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~ 222 (650)
T KOG0462|consen 183 VLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLN 222 (650)
T ss_pred eeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCcc
Confidence 99999997654322 2333344444446899999999976
No 264
>PLN03127 Elongation factor Tu; Provisional
Probab=99.32 E-value=3.1e-11 Score=91.91 Aligned_cols=135 Identities=17% Similarity=0.139 Sum_probs=76.4
Q ss_pred CCCCCCChhhhHhhhhcc------cc------c----ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVDG------QF------V----DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYS 64 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~------~~------~----~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 64 (157)
+|..++|||||+++|.+. .. . .+....+... .....+......+.+.|+||+.+|......-.
T Consensus 67 iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~-~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~ 145 (447)
T PLN03127 67 IGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIA-TAHVEYETAKRHYAHVDCPGHADYVKNMITGA 145 (447)
T ss_pred ECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceee-eeEEEEcCCCeEEEEEECCCccchHHHHHHHH
Confidence 599999999999999632 10 0 0000111111 12223333445678999999988765444455
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEEEEeCCCCCCCceecH---HHHHHHH
Q psy1873 65 MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVLVGNKKDLHMERMISY---DEGKRLA 140 (157)
Q Consensus 65 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~vv~nK~Dl~~~~~~~~---~~~~~~~ 140 (157)
..+|++++|.|.++...- +..+.+..+ ... . +| ++++.||+|+.+...... .+...+.
T Consensus 146 ~~aD~allVVda~~g~~~-qt~e~l~~~-~~~---g-------------ip~iIvviNKiDlv~~~~~~~~i~~~i~~~l 207 (447)
T PLN03127 146 AQMDGGILVVSAPDGPMP-QTKEHILLA-RQV---G-------------VPSLVVFLNKVDVVDDEELLELVEMELRELL 207 (447)
T ss_pred hhCCEEEEEEECCCCCch-hHHHHHHHH-HHc---C-------------CCeEEEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence 679999999998764321 122222222 222 1 78 578899999864322111 1222333
Q ss_pred HHh-----CCcEEEecccc
Q psy1873 141 ESW-----KAGFVEASAKQ 154 (157)
Q Consensus 141 ~~~-----~~~~~e~Sa~~ 154 (157)
... .++++.+||.+
T Consensus 208 ~~~~~~~~~vpiip~Sa~s 226 (447)
T PLN03127 208 SFYKFPGDEIPIIRGSALS 226 (447)
T ss_pred HHhCCCCCcceEEEeccce
Confidence 322 36888888863
No 265
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.32 E-value=2.4e-11 Score=92.47 Aligned_cols=154 Identities=16% Similarity=0.142 Sum_probs=98.1
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEE-EEEEC--CeEEEEEEEeCCCCccCcCchhhhccCC----CEEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVK-TTRMN--NQDYDLKLVDTAGQDEYSIFPAQYSMDI----HGYVLV 73 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~----~~~ilv 73 (157)
+|+.++|||||+.+|.+. +.+.++.+-.|.+ .+.-+ +...++.+|-..|...+..+.+..+... -.+|+|
T Consensus 31 lG~~~~GKttli~~L~~~---e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIv 107 (472)
T PF05783_consen 31 LGDKGSGKTTLIARLQGI---EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIV 107 (472)
T ss_pred EeCCCCchHHHHHHhhcc---CCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceEEEEE
Confidence 699999999999998653 2344566645522 22211 2245789999998877877776665543 268889
Q ss_pred EECCChhhH-HHHHHHHHHHHHHhccc-------------------------cCC---C-------C---C---------
Q psy1873 74 YSITSHKSF-EVVQILYDKLLDMTGKI-------------------------QNS---S-------V---K--------- 105 (157)
Q Consensus 74 ~d~~~~~s~-~~~~~~~~~i~~~~~~~-------------------------~~~---~-------~---~--------- 105 (157)
.|++.|..+ +.+..|+.-+.++...- .+. + . .
T Consensus 108 lDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~ 187 (472)
T PF05783_consen 108 LDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLG 187 (472)
T ss_pred ecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccccCCCC
Confidence 999999774 45566555443322210 000 0 0 0
Q ss_pred -CCCCCCCCCcEEEEEeCCCCCC----Cce-------ecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 106 -SPTSCVSSVPIVLVGNKKDLHM----ERM-------ISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 106 -~~~~~~~~~p~~vv~nK~Dl~~----~~~-------~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
..-..+.++|++||++|+|... +.. +.....+.+|-.+|+..+.||+++..|
T Consensus 188 ~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n 251 (472)
T PF05783_consen 188 EGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKN 251 (472)
T ss_pred CcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeecccccc
Confidence 0012345799999999999631 111 122236889999999999999988754
No 266
>PRK12740 elongation factor G; Reviewed
Probab=99.30 E-value=2.4e-11 Score=96.97 Aligned_cols=123 Identities=18% Similarity=0.158 Sum_probs=78.0
Q ss_pred CCCCCCChhhhHhhhhccccc----ccc--------------cCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV----DSY--------------DPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPA 61 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~----~~~--------------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 61 (157)
||..++|||||+++|+...-. ... ...+.... ...+..+ .+.+.+||+||+.++...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--GHKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--CEEEEEEECCCcHHHHHHHH
Confidence 799999999999999532110 000 00110001 2233333 47789999999998877778
Q ss_pred hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH
Q psy1873 62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE 141 (157)
Q Consensus 62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~ 141 (157)
..+..+|++++++|.++....+... .+..+... . +|+++++||+|+.... .......+..
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~-~~~~~~~~----~-------------~p~iiv~NK~D~~~~~--~~~~~~~l~~ 138 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTET-VWRQAEKY----G-------------VPRIIFVNKMDRAGAD--FFRVLAQLQE 138 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHH-HHHHHHHc----C-------------CCEEEEEECCCCCCCC--HHHHHHHHHH
Confidence 8889999999999998876554432 22222221 2 8999999999986432 2233444545
Q ss_pred HhCC
Q psy1873 142 SWKA 145 (157)
Q Consensus 142 ~~~~ 145 (157)
.++.
T Consensus 139 ~l~~ 142 (668)
T PRK12740 139 KLGA 142 (668)
T ss_pred HHCC
Confidence 5554
No 267
>KOG1145|consensus
Probab=99.30 E-value=3.2e-11 Score=91.45 Aligned_cols=134 Identities=20% Similarity=0.190 Sum_probs=89.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEE-CCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRM-NNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS 78 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~ 78 (157)
||.-.-|||||+..|.+..........+..-. -..+.. +| -.+.+.||||+..|..|+..--..+|+++||...+|
T Consensus 159 MGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G--~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadD 236 (683)
T KOG1145|consen 159 MGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG--KSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADD 236 (683)
T ss_pred eecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC--CEEEEecCCcHHHHHHHHhccCccccEEEEEEEccC
Confidence 57788899999999988766433322222111 223333 44 457889999999999999999999999999998887
Q ss_pred hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHH-------HHHhC--CcEEE
Q psy1873 79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRL-------AESWK--AGFVE 149 (157)
Q Consensus 79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~-------~~~~~--~~~~e 149 (157)
.---+.+ +.|...... . +|++|+.||+|.+... .+...+- +..+| .++++
T Consensus 237 GVmpQT~----EaIkhAk~A-~-------------VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQvip 295 (683)
T KOG1145|consen 237 GVMPQTL----EAIKHAKSA-N-------------VPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQVIP 295 (683)
T ss_pred CccHhHH----HHHHHHHhc-C-------------CCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCceeEEE
Confidence 4322221 112222222 2 9999999999975432 2222222 23344 58999
Q ss_pred eccccCCC
Q psy1873 150 ASAKQDDY 157 (157)
Q Consensus 150 ~Sa~~~~~ 157 (157)
+||++|+|
T Consensus 296 iSAl~g~n 303 (683)
T KOG1145|consen 296 ISALTGEN 303 (683)
T ss_pred eecccCCC
Confidence 99999997
No 268
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.29 E-value=8.2e-12 Score=100.11 Aligned_cols=108 Identities=20% Similarity=0.224 Sum_probs=72.7
Q ss_pred CCCCCCChhhhHhhhhcc---------------ccccc---ccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchh
Q psy1873 1 MGYRSVGKSSLSIQFVDG---------------QFVDS---YDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPA 61 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~---------------~~~~~---~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 61 (157)
||..++|||||+.+|+.. .+... +..|+.... ......++..+.+.+|||||+.+|.....
T Consensus 25 vGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~ 104 (720)
T TIGR00490 25 VAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDVT 104 (720)
T ss_pred EEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccccHHHHH
Confidence 689999999999999742 11111 112333222 22334566778899999999999988888
Q ss_pred hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873 62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH 126 (157)
Q Consensus 62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~ 126 (157)
..++.+|++|+|+|..+.-..+.. ..+..... .. .|+++++||.|..
T Consensus 105 ~al~~aD~~llVvda~~g~~~~t~-~~~~~~~~----~~-------------~p~ivviNKiD~~ 151 (720)
T TIGR00490 105 RAMRAVDGAIVVVCAVEGVMPQTE-TVLRQALK----EN-------------VKPVLFINKVDRL 151 (720)
T ss_pred HHHHhcCEEEEEEecCCCCCccHH-HHHHHHHH----cC-------------CCEEEEEEChhcc
Confidence 889999999999998874322221 11222211 11 7888999999974
No 269
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.25 E-value=8.2e-10 Score=75.56 Aligned_cols=135 Identities=16% Similarity=0.149 Sum_probs=75.6
Q ss_pred CCCCCCChhhhHhhhhccccc-ccc---cCCccceEEEEEEECCeEEEEEEEeCCCCccCcC--------c---hhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV-DSY---DPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI--------F---PAQYSM 65 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~-~~~---~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~---~~~~~~ 65 (157)
||.+|||||||+|.+++.+.. ... ..|... ......+++ ..+.++||||-..... + ......
T Consensus 6 vG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~-~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~ 82 (196)
T cd01852 6 VGKTGAGKSATGNTILGREVFESKLSASSVTKTC-QKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAP 82 (196)
T ss_pred ECCCCCCHHHHHHHhhCCCccccccCCCCccccc-ceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHHhcCC
Confidence 699999999999999987543 221 122221 123334455 4578999999654421 1 112245
Q ss_pred CCCEEEEEEECCChh-hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec------HHHHHH
Q psy1873 66 DIHGYVLVYSITSHK-SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS------YDEGKR 138 (157)
Q Consensus 66 ~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~------~~~~~~ 138 (157)
+.+++|+|.++.+.. ....+.+++.++...... .+++++.|++|......+. ....+.
T Consensus 83 g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~---------------~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~ 147 (196)
T cd01852 83 GPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVL---------------DHTIVLFTRGDDLEGGTLEDYLENSCEALKR 147 (196)
T ss_pred CCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhH---------------hcEEEEEECccccCCCcHHHHHHhccHHHHH
Confidence 789999999987622 122233333333221111 5688999999964432111 123444
Q ss_pred HHHHhCCcEEEeccc
Q psy1873 139 LAESWKAGFVEASAK 153 (157)
Q Consensus 139 ~~~~~~~~~~e~Sa~ 153 (157)
+.+..+--|+..+.+
T Consensus 148 l~~~c~~r~~~f~~~ 162 (196)
T cd01852 148 LLEKCGGRYVAFNNK 162 (196)
T ss_pred HHHHhCCeEEEEeCC
Confidence 555555555555543
No 270
>PTZ00258 GTP-binding protein; Provisional
Probab=99.24 E-value=9.2e-11 Score=87.35 Aligned_cols=77 Identities=16% Similarity=0.138 Sum_probs=49.9
Q ss_pred CCCCCCChhhhHhhhhccccc-ccccCCccceEEEEEEECCe---------------EEEEEEEeCCCCccCc----Cch
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTFVKTTRMNNQ---------------DYDLKLVDTAGQDEYS----IFP 60 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~----~~~ 60 (157)
||.||||||||+|++.+.... ..+..|+.+.....+.+.+. ...+++.|+||-..-. .+.
T Consensus 27 VG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg 106 (390)
T PTZ00258 27 VGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLG 106 (390)
T ss_pred ECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHH
Confidence 699999999999999876653 34444443333333343322 2358999999954221 222
Q ss_pred hh---hccCCCEEEEEEECC
Q psy1873 61 AQ---YSMDIHGYVLVYSIT 77 (157)
Q Consensus 61 ~~---~~~~~~~~ilv~d~~ 77 (157)
.. .++.+|++++|.|..
T Consensus 107 ~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 107 NAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred HHHHHHHHHCCEEEEEEeCC
Confidence 22 356799999999974
No 271
>KOG1490|consensus
Probab=99.24 E-value=2.5e-11 Score=91.13 Aligned_cols=140 Identities=18% Similarity=0.152 Sum_probs=91.5
Q ss_pred CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCccC--cCchhhhc------c-CCCEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY--SIFPAQYS------M-DIHGY 70 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~~~~~------~-~~~~~ 70 (157)
.|.|+||||||++.+..... ...|..|+...|..++.+. ...+++.||||--+. .......+ . =-.++
T Consensus 174 cG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dyk--YlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaV 251 (620)
T KOG1490|consen 174 CGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYK--YLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAV 251 (620)
T ss_pred ecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhh--eeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhh
Confidence 48999999999999998877 4567667665555554443 356789999994321 11111111 1 11357
Q ss_pred EEEEECCCh--hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHH---HHHHHhCC
Q psy1873 71 VLVYSITSH--KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGK---RLAESWKA 145 (157)
Q Consensus 71 ilv~d~~~~--~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~---~~~~~~~~ 145 (157)
+++-|++.. -|+.+-...+..|...... .|+++|.||+|+.....++.+... .+...-++
T Consensus 252 LYfmDLSe~CGySva~QvkLfhsIKpLFaN---------------K~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v 316 (620)
T KOG1490|consen 252 LYFMDLSEMCGYSVAAQVKLYHSIKPLFAN---------------KVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNV 316 (620)
T ss_pred eeeeechhhhCCCHHHHHHHHHHhHHHhcC---------------CceEEEeecccccCccccCHHHHHHHHHHHhccCc
Confidence 888898864 3444444444444444333 889999999999776666655533 33344458
Q ss_pred cEEEeccccCCC
Q psy1873 146 GFVEASAKQDDY 157 (157)
Q Consensus 146 ~~~e~Sa~~~~~ 157 (157)
+++++|+.+.+|
T Consensus 317 ~v~~tS~~~eeg 328 (620)
T KOG1490|consen 317 KVVQTSCVQEEG 328 (620)
T ss_pred eEEEecccchhc
Confidence 999999998876
No 272
>KOG0705|consensus
Probab=99.23 E-value=2.4e-11 Score=92.12 Aligned_cols=138 Identities=22% Similarity=0.409 Sum_probs=108.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
||..++|||+|+.|++.+.|.... .+.+..|++.+.++++...+.+.|.+|... ..|..++|++|++|.+.+..
T Consensus 36 vg~~~sgktalvhr~ltgty~~~e-~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfvf~~~d~~ 109 (749)
T KOG0705|consen 36 VGTSQSGKTALVHRYLTGTYTQDE-SPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFVFSVEDEQ 109 (749)
T ss_pred eecccCCceeeeeeeccceecccc-CCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEEEEecccc
Confidence 699999999999999998887554 344567889999999999999999998443 56778899999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC--CCceecHHHHHHHHHHh-CCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH--MERMISYDEGKRLAESW-KAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~ 157 (157)
+|+.+......+....... .+|+++++++.-.. ..+.+...++.+++..+ .+.||+++|.+|.|
T Consensus 110 s~q~v~~l~~~l~~~r~r~-------------~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGln 176 (749)
T KOG0705|consen 110 SFQAVQALAHEMSSYRNIS-------------DLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLN 176 (749)
T ss_pred CHHHHHHHHhhcccccccc-------------cchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhh
Confidence 9999988777765544433 39999999875543 34455556666655554 48999999988864
No 273
>PRK12739 elongation factor G; Reviewed
Probab=99.22 E-value=9.7e-11 Score=93.72 Aligned_cols=108 Identities=17% Similarity=0.167 Sum_probs=70.6
Q ss_pred CCCCCCChhhhHhhhhcccc----ccc--------------ccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcCchh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF----VDS--------------YDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPA 61 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~----~~~--------------~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 61 (157)
||..++|||||+++|+...- ... ....+. ......+.+++ ..+.++||||+.+|.....
T Consensus 14 iGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~~f~~e~~ 91 (691)
T PRK12739 14 MAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGHVDFTIEVE 91 (691)
T ss_pred ECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCHHHHHHHHH
Confidence 69999999999999974210 000 011111 11133334444 5678999999988877788
Q ss_pred hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q psy1873 62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME 128 (157)
Q Consensus 62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~ 128 (157)
..+..+|++|+|+|.++...-+.. ..+..+.. .. +|++++.||+|+...
T Consensus 92 ~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~----~~-------------~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 92 RSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK----YG-------------VPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH----cC-------------CCEEEEEECCCCCCC
Confidence 889999999999999876433222 22222221 12 899999999998653
No 274
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.19 E-value=4e-10 Score=81.32 Aligned_cols=117 Identities=16% Similarity=0.187 Sum_probs=64.6
Q ss_pred CCCCCCChhhhHhhhhccccc--ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhh-------hc--cCCCE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQ-------YS--MDIHG 69 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-------~~--~~~~~ 69 (157)
||.+||||||++|++++.... ....++...........++ ..+.++||||..+....... ++ ...|+
T Consensus 44 vGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~Dv 121 (313)
T TIGR00991 44 MGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDV 121 (313)
T ss_pred ECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCE
Confidence 699999999999999987642 2222221111112223344 56899999997654322111 11 25789
Q ss_pred EEEEEECCChhhHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec
Q psy1873 70 YVLVYSITSHKSFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS 132 (157)
Q Consensus 70 ~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~ 132 (157)
+|+|..++.. .+... ...++.+........ -.+++|+.|++|..+....+
T Consensus 122 VLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~i------------w~~~IVVfTh~d~~~pd~~~ 172 (313)
T TIGR00991 122 LLYVDRLDAY-RVDTLDGQVIRAITDSFGKDI------------WRKSLVVLTHAQFSPPDGLE 172 (313)
T ss_pred EEEEeccCcc-cCCHHHHHHHHHHHHHhhhhh------------hccEEEEEECCccCCCCCCC
Confidence 9999665532 12222 223333333221110 05689999999976433333
No 275
>PRK00007 elongation factor G; Reviewed
Probab=99.19 E-value=2e-10 Score=91.99 Aligned_cols=133 Identities=17% Similarity=0.197 Sum_probs=79.6
Q ss_pred CCCCCCChhhhHhhhhc--ccc--ccc--------------ccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcCchh
Q psy1873 1 MGYRSVGKSSLSIQFVD--GQF--VDS--------------YDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPA 61 (157)
Q Consensus 1 vG~~~~GKssli~~~~~--~~~--~~~--------------~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 61 (157)
+|.+++|||||+++|+. +.. ... ....+. ......+.++ ...+.+.||||+.+|..-..
T Consensus 16 iG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG~~~f~~ev~ 93 (693)
T PRK00007 16 MAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPGHVDFTIEVE 93 (693)
T ss_pred ECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCCcHHHHHHHH
Confidence 69999999999999973 111 000 011111 1112333444 45788999999988766566
Q ss_pred hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH
Q psy1873 62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE 141 (157)
Q Consensus 62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~ 141 (157)
..+..+|++++|+|....-.-+.. ..+..+... . .|++++.||+|+.... .......+..
T Consensus 94 ~al~~~D~~vlVvda~~g~~~qt~-~~~~~~~~~----~-------------~p~iv~vNK~D~~~~~--~~~~~~~i~~ 153 (693)
T PRK00007 94 RSLRVLDGAVAVFDAVGGVEPQSE-TVWRQADKY----K-------------VPRIAFVNKMDRTGAD--FYRVVEQIKD 153 (693)
T ss_pred HHHHHcCEEEEEEECCCCcchhhH-HHHHHHHHc----C-------------CCEEEEEECCCCCCCC--HHHHHHHHHH
Confidence 677889999999998765433322 222222222 2 8899999999986533 1222333334
Q ss_pred HhCC----cEEEeccccC
Q psy1873 142 SWKA----GFVEASAKQD 155 (157)
Q Consensus 142 ~~~~----~~~e~Sa~~~ 155 (157)
.++. ..+.+||..+
T Consensus 154 ~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 154 RLGANPVPIQLPIGAEDD 171 (693)
T ss_pred HhCCCeeeEEecCccCCc
Confidence 4442 3456666654
No 276
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.19 E-value=4.6e-10 Score=82.84 Aligned_cols=77 Identities=19% Similarity=0.159 Sum_probs=49.5
Q ss_pred CCCCCCChhhhHhhhhccccc-ccccCCccceEEEEEEECCe---------------EEEEEEEeCCCCccCc----Cch
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTFVKTTRMNNQ---------------DYDLKLVDTAGQDEYS----IFP 60 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~----~~~ 60 (157)
||.||||||||+|++++.... ..|..|+.+.....+.+.+. ...+.+.|+||-..-. .+.
T Consensus 8 VG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg 87 (364)
T PRK09601 8 VGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLG 87 (364)
T ss_pred ECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCChHHHHH
Confidence 699999999999999987642 34444443322333333331 1358999999954321 222
Q ss_pred hh---hccCCCEEEEEEECC
Q psy1873 61 AQ---YSMDIHGYVLVYSIT 77 (157)
Q Consensus 61 ~~---~~~~~~~~ilv~d~~ 77 (157)
.. .++.+|++++|.|..
T Consensus 88 ~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 88 NQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHhCCEEEEEEeCC
Confidence 22 357899999999974
No 277
>PRK09866 hypothetical protein; Provisional
Probab=99.17 E-value=7.9e-10 Score=86.13 Aligned_cols=98 Identities=20% Similarity=0.128 Sum_probs=60.2
Q ss_pred EEEEEeCCCCccC-cC----chhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEE
Q psy1873 44 DLKLVDTAGQDEY-SI----FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL 118 (157)
Q Consensus 44 ~~~i~D~~g~~~~-~~----~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~v 118 (157)
.+.+.||||-..- .. .....+..+|++++|.|.++.-+... ..+.+.+...... .|+++
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~K~--------------~PVIL 294 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVGQS--------------VPLYV 294 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcCCC--------------CCEEE
Confidence 4567899997542 11 23346889999999999987533322 1222222222211 59999
Q ss_pred EEeCCCCCCCceecHHHHHHHHHH----hC---CcEEEeccccCCC
Q psy1873 119 VGNKKDLHMERMISYDEGKRLAES----WK---AGFVEASAKQDDY 157 (157)
Q Consensus 119 v~nK~Dl~~~~~~~~~~~~~~~~~----~~---~~~~e~Sa~~~~~ 157 (157)
|.||+|+.+......+....+... .+ ..+|.+||++|.|
T Consensus 295 VVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~n 340 (741)
T PRK09866 295 LVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYL 340 (741)
T ss_pred EEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCC
Confidence 999999854333233444444321 12 2699999999986
No 278
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.17 E-value=1.2e-10 Score=88.71 Aligned_cols=98 Identities=16% Similarity=0.149 Sum_probs=62.4
Q ss_pred EEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCC
Q psy1873 44 DLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKK 123 (157)
Q Consensus 44 ~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~ 123 (157)
.+.+.|+||+++|-...-.-...+|++++|.|.++...-.+..+.+ .+.....- .|++|+.||+
T Consensus 118 ~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl-~i~~~lgi---------------~~iIVvlNKi 181 (460)
T PTZ00327 118 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL-AAVEIMKL---------------KHIIILQNKI 181 (460)
T ss_pred eEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH-HHHHHcCC---------------CcEEEEEecc
Confidence 5789999999988765555667889999999998742111122222 22222221 5689999999
Q ss_pred CCCCCcee--cHHHHHHHHHH---hCCcEEEeccccCCC
Q psy1873 124 DLHMERMI--SYDEGKRLAES---WKAGFVEASAKQDDY 157 (157)
Q Consensus 124 Dl~~~~~~--~~~~~~~~~~~---~~~~~~e~Sa~~~~~ 157 (157)
|+.+.... ..++...+... .+.+++.+||++|+|
T Consensus 182 Dlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~n 220 (460)
T PTZ00327 182 DLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYN 220 (460)
T ss_pred cccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCC
Confidence 98643221 11222333222 257999999999987
No 279
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.17 E-value=5.5e-10 Score=83.72 Aligned_cols=99 Identities=22% Similarity=0.208 Sum_probs=76.6
Q ss_pred CCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEE
Q psy1873 39 NNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL 118 (157)
Q Consensus 39 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~v 118 (157)
+++.|.+++.||||+-+|..-...-+..|.+.+|+.|.+..-.-+.+...+..+-.. .-++-
T Consensus 72 ~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~------------------LeIiP 133 (603)
T COG0481 72 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENN------------------LEIIP 133 (603)
T ss_pred CCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcC------------------cEEEE
Confidence 457899999999999999987777888999999999999876666666665554322 55889
Q ss_pred EEeCCCCCCCceecHHHHHHHHHHhCC---cEEEeccccCCC
Q psy1873 119 VGNKKDLHMERMISYDEGKRLAESWKA---GFVEASAKQDDY 157 (157)
Q Consensus 119 v~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~e~Sa~~~~~ 157 (157)
|.||+||+... +..-..+..+-.|+ ..+.+|||+|.|
T Consensus 134 ViNKIDLP~Ad--pervk~eIe~~iGid~~dav~~SAKtG~g 173 (603)
T COG0481 134 VLNKIDLPAAD--PERVKQEIEDIIGIDASDAVLVSAKTGIG 173 (603)
T ss_pred eeecccCCCCC--HHHHHHHHHHHhCCCcchheeEecccCCC
Confidence 99999996532 23445556666775 589999999986
No 280
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.15 E-value=7.4e-10 Score=79.17 Aligned_cols=77 Identities=17% Similarity=0.170 Sum_probs=49.7
Q ss_pred CCCCCCChhhhHhhhhccccc-ccccCCccceEEEEEEECCe---------------EEEEEEEeCCCCccC----cCch
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTFVKTTRMNNQ---------------DYDLKLVDTAGQDEY----SIFP 60 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~----~~~~ 60 (157)
||.||||||||+|++++.... ..|..|+-+.....+.+.+. ...++++|+||-..- ..+.
T Consensus 4 vG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg 83 (274)
T cd01900 4 VGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLG 83 (274)
T ss_pred eCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhhHHH
Confidence 799999999999999987763 33444433322333344332 235899999995422 1232
Q ss_pred hhh---ccCCCEEEEEEECC
Q psy1873 61 AQY---SMDIHGYVLVYSIT 77 (157)
Q Consensus 61 ~~~---~~~~~~~ilv~d~~ 77 (157)
..+ ++.+|++++|+|..
T Consensus 84 ~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 84 NKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHhCCEEEEEEeCc
Confidence 233 56799999999864
No 281
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.13 E-value=7.2e-10 Score=77.45 Aligned_cols=130 Identities=14% Similarity=0.065 Sum_probs=72.1
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|.+|+|||||++.+++..-........+. ..+ .......+.++|++|.. ..+. ...+.+|++++++|.+...
T Consensus 45 vG~~~~GKstl~~~l~~~~~~~~~~~~~g~---i~i-~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllviDa~~~~ 117 (225)
T cd01882 45 VGPPGVGKTTLIKSLVKNYTKQNISDIKGP---ITV-VTGKKRRLTFIECPNDI--NAMI-DIAKVADLVLLLIDASFGF 117 (225)
T ss_pred ECCCCCCHHHHHHHHHhhcccCcccccccc---EEE-EecCCceEEEEeCCchH--HHHH-HHHHhcCEEEEEEecCcCC
Confidence 699999999999999864211111111111 111 22244567899999854 2222 3357889999999987543
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcE-EEEEeCCCCCCCce-e--cHHHHHH-HHHH--hCCcEEEeccc
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPI-VLVGNKKDLHMERM-I--SYDEGKR-LAES--WKAGFVEASAK 153 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~-~vv~nK~Dl~~~~~-~--~~~~~~~-~~~~--~~~~~~e~Sa~ 153 (157)
..+. ...+..+... + .|. ++|.||.|+..... . ..++.+. +... .+.+++.+||+
T Consensus 118 ~~~~-~~i~~~l~~~----g-------------~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~ 179 (225)
T cd01882 118 EMET-FEFLNILQVH----G-------------FPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGI 179 (225)
T ss_pred CHHH-HHHHHHHHHc----C-------------CCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeec
Confidence 3222 1222222111 1 664 55999999854322 1 1112222 3322 23689999998
Q ss_pred cC
Q psy1873 154 QD 155 (157)
Q Consensus 154 ~~ 155 (157)
+.
T Consensus 180 ~~ 181 (225)
T cd01882 180 VH 181 (225)
T ss_pred cC
Confidence 75
No 282
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.12 E-value=2e-09 Score=80.11 Aligned_cols=135 Identities=16% Similarity=0.216 Sum_probs=81.4
Q ss_pred CCCCCCChhhhHhhhhcccc----c-------------cccc----CCccceE--EEEEEE---CCeEEEEEEEeCCCCc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF----V-------------DSYD----PTIENTF--VKTTRM---NNQDYDLKLVDTAGQD 54 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~----~-------------~~~~----~t~~~~~--~~~~~~---~~~~~~~~i~D~~g~~ 54 (157)
+|+.++|||||+++|.+.-. . +... .|+...| ...+.+ ++....+.+.||+|-.
T Consensus 23 vGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~ 102 (492)
T TIGR02836 23 VGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCVGYT 102 (492)
T ss_pred EcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEECCCcc
Confidence 69999999999999988722 1 1111 2222222 122222 3455788999999843
Q ss_pred cCcCc-----------------------------hhhhcc-CCCEEEEEE-ECC----ChhhHHHH-HHHHHHHHHHhcc
Q psy1873 55 EYSIF-----------------------------PAQYSM-DIHGYVLVY-SIT----SHKSFEVV-QILYDKLLDMTGK 98 (157)
Q Consensus 55 ~~~~~-----------------------------~~~~~~-~~~~~ilv~-d~~----~~~s~~~~-~~~~~~i~~~~~~ 98 (157)
.-..+ ....+. ++++.|+|. |.+ .++.+... .+++.++.+..
T Consensus 103 v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~-- 180 (492)
T TIGR02836 103 VKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELN-- 180 (492)
T ss_pred cCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcC--
Confidence 22211 112233 778888887 664 23445444 45555554443
Q ss_pred ccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEecccc
Q psy1873 99 IQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154 (157)
Q Consensus 99 ~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 154 (157)
+|++++.||.|..... ....+..+...++.+++.+|+..
T Consensus 181 ---------------kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~ 219 (492)
T TIGR02836 181 ---------------KPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVES 219 (492)
T ss_pred ---------------CCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHH
Confidence 9999999999942221 34445566777888888888753
No 283
>PRK13768 GTPase; Provisional
Probab=99.12 E-value=1.5e-10 Score=82.18 Aligned_cols=71 Identities=27% Similarity=0.136 Sum_probs=43.9
Q ss_pred EEEEEeCCCCccCc---CchhhhccC-----CCEEEEEEECCChhhHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCC
Q psy1873 44 DLKLVDTAGQDEYS---IFPAQYSMD-----IHGYVLVYSITSHKSFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSV 114 (157)
Q Consensus 44 ~~~i~D~~g~~~~~---~~~~~~~~~-----~~~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 114 (157)
.+.+||+||+.+.. ..++.+++. .+++++++|.+........ ..++......... . .
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~-~-------------~ 163 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRL-G-------------L 163 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHc-C-------------C
Confidence 57899999987643 344333332 7899999999754433322 2222222221111 2 9
Q ss_pred cEEEEEeCCCCCCC
Q psy1873 115 PIVLVGNKKDLHME 128 (157)
Q Consensus 115 p~~vv~nK~Dl~~~ 128 (157)
|+++|.||+|+...
T Consensus 164 ~~i~v~nK~D~~~~ 177 (253)
T PRK13768 164 PQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEEEhHhhcCc
Confidence 99999999998654
No 284
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.09 E-value=2.1e-11 Score=85.67 Aligned_cols=70 Identities=26% Similarity=0.068 Sum_probs=36.1
Q ss_pred EEEEEeCCCCccCcCchhhhc--------cCCCEEEEEEECCChhhHHH-HHHHHHHHHHHhccccCCCCCCCCCCCCCC
Q psy1873 44 DLKLVDTAGQDEYSIFPAQYS--------MDIHGYVLVYSITSHKSFEV-VQILYDKLLDMTGKIQNSSVKSPTSCVSSV 114 (157)
Q Consensus 44 ~~~i~D~~g~~~~~~~~~~~~--------~~~~~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 114 (157)
.+.++|||||.++...+.... ...-+++++.|.....+... +..++..+.-..+.. .
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~--------------l 157 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLE--------------L 157 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHT--------------S
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCC--------------C
Confidence 678999999988776655543 33446777778664433221 222222222222222 9
Q ss_pred cEEEEEeCCCCCC
Q psy1873 115 PIVLVGNKKDLHM 127 (157)
Q Consensus 115 p~~vv~nK~Dl~~ 127 (157)
|.+.|.||+|+.+
T Consensus 158 P~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 158 PHVNVLSKIDLLS 170 (238)
T ss_dssp EEEEEE--GGGS-
T ss_pred CEEEeeeccCccc
Confidence 9999999999965
No 285
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.07 E-value=1.8e-09 Score=76.38 Aligned_cols=109 Identities=13% Similarity=0.114 Sum_probs=62.0
Q ss_pred CCCCCCChhhhHhhhhccccc--ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC---c-------hhhhcc--C
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI---F-------PAQYSM--D 66 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~-------~~~~~~--~ 66 (157)
||.+|||||||+|++++.... ....++...........++ ..+.+|||||-..... . ...+++ .
T Consensus 37 vG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~ 114 (249)
T cd01853 37 LGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKT 114 (249)
T ss_pred ECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccC
Confidence 699999999999999987642 2222222222222333444 5679999999654421 1 112333 4
Q ss_pred CCEEEEEEECCChh-hHH--HHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873 67 IHGYVLVYSITSHK-SFE--VVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH 126 (157)
Q Consensus 67 ~~~~ilv~d~~~~~-s~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~ 126 (157)
.+++++|..++... ... .+.+.+.......- - .+++||.||+|..
T Consensus 115 idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i--~-------------~~~ivV~T~~d~~ 162 (249)
T cd01853 115 PDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSI--W-------------RNAIVVLTHAASS 162 (249)
T ss_pred CCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhh--H-------------hCEEEEEeCCccC
Confidence 67777776665432 222 22333333222111 1 5699999999975
No 286
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.07 E-value=9.9e-10 Score=75.81 Aligned_cols=44 Identities=23% Similarity=0.096 Sum_probs=31.7
Q ss_pred CcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CcEEEeccccCCC
Q psy1873 114 VPIVLVGNKKDLHMERMISYDEGKRLAESWK--AGFVEASAKQDDY 157 (157)
Q Consensus 114 ~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~~ 157 (157)
.|.++++||+|+.+.......+.....+..+ .+++++||++|+|
T Consensus 149 ~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~g 194 (207)
T TIGR00073 149 EADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEG 194 (207)
T ss_pred hCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence 6789999999996543333344444444444 7999999999986
No 287
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.07 E-value=7.4e-10 Score=81.09 Aligned_cols=73 Identities=19% Similarity=0.263 Sum_probs=59.4
Q ss_pred eEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh----------hhHHHHHHHHHHHHHHhccccCCCCCCCCCC
Q psy1873 41 QDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH----------KSFEVVQILYDKLLDMTGKIQNSSVKSPTSC 110 (157)
Q Consensus 41 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 110 (157)
..+.+.+||++||...+..|..++.+++++|+|.|+++- ..+.+....+..+.....-.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~----------- 227 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFA----------- 227 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcccc-----------
Confidence 357789999999999999999999999999999999974 45666666666666554322
Q ss_pred CCCCcEEEEEeCCCCC
Q psy1873 111 VSSVPIVLVGNKKDLH 126 (157)
Q Consensus 111 ~~~~p~~vv~nK~Dl~ 126 (157)
.+|++|++||.|+.
T Consensus 228 --~~pill~~NK~D~f 241 (317)
T cd00066 228 --NTSIILFLNKKDLF 241 (317)
T ss_pred --CCCEEEEccChHHH
Confidence 39999999999963
No 288
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.04 E-value=2.4e-09 Score=73.44 Aligned_cols=90 Identities=16% Similarity=0.114 Sum_probs=52.6
Q ss_pred EEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeC
Q psy1873 43 YDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122 (157)
Q Consensus 43 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK 122 (157)
....+.++.|..--....+.. ++.+|.|+|+.+.++.... .. .... ..=++++||
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~l---~~~~i~vvD~~~~~~~~~~--~~-------~qi~-------------~ad~~~~~k 146 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPEL---ADLTIFVIDVAAGDKIPRK--GG-------PGIT-------------RSDLLVINK 146 (199)
T ss_pred CCEEEEECCCCCcccccchhh---hCcEEEEEEcchhhhhhhh--hH-------hHhh-------------hccEEEEEh
Confidence 345567777743222222221 5779999999876663211 00 1100 233899999
Q ss_pred CCCCCCceecHHHHHHHHHH--hCCcEEEeccccCCC
Q psy1873 123 KDLHMERMISYDEGKRLAES--WKAGFVEASAKQDDY 157 (157)
Q Consensus 123 ~Dl~~~~~~~~~~~~~~~~~--~~~~~~e~Sa~~~~~ 157 (157)
+|+.+......+......+. .+.+++++||++|+|
T Consensus 147 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~g 183 (199)
T TIGR00101 147 IDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEG 183 (199)
T ss_pred hhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence 99964322233444444444 347999999999987
No 289
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=1.6e-09 Score=80.01 Aligned_cols=105 Identities=17% Similarity=0.178 Sum_probs=68.0
Q ss_pred ECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh---hH--HHHHHHHHHHHHHhccccCCCCCCCCCCCC
Q psy1873 38 MNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK---SF--EVVQILYDKLLDMTGKIQNSSVKSPTSCVS 112 (157)
Q Consensus 38 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 112 (157)
.....+.+.|.|+||+.+|-...-.-...+|+.|||.|..+.+ .| +...+.+..+.....-
T Consensus 80 fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi-------------- 145 (428)
T COG5256 80 FETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGI-------------- 145 (428)
T ss_pred eecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCC--------------
Confidence 3344567999999998888765555566789999999998764 12 1112233333333332
Q ss_pred CCcEEEEEeCCCCCCCceecHH----HHHHHHHHhC-----CcEEEeccccCCC
Q psy1873 113 SVPIVLVGNKKDLHMERMISYD----EGKRLAESWK-----AGFVEASAKQDDY 157 (157)
Q Consensus 113 ~~p~~vv~nK~Dl~~~~~~~~~----~~~~~~~~~~-----~~~~e~Sa~~~~~ 157 (157)
..++|+.||.|+.+-++-..+ +...+.+..| ++|+.+||.+|+|
T Consensus 146 -~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~N 198 (428)
T COG5256 146 -KQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDN 198 (428)
T ss_pred -ceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCc
Confidence 558889999998753332222 2333445555 5699999999987
No 290
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.03 E-value=3.3e-10 Score=70.45 Aligned_cols=122 Identities=20% Similarity=0.134 Sum_probs=78.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc----hhhhccCCCEEEEEEEC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF----PAQYSMDIHGYVLVYSI 76 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----~~~~~~~~~~~ilv~d~ 76 (157)
||..|+|||||++++.+.... |..|.. +.++.+ -..|++|.---... .-....++|+++++-.+
T Consensus 7 vG~~gcGKTtL~q~L~G~~~l--ykKTQA------ve~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~a 74 (148)
T COG4917 7 VGQVGCGKTTLFQSLYGNDTL--YKKTQA------VEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAA 74 (148)
T ss_pred ecccccCchhHHHHhhcchhh--hcccce------eeccCc----cccCCchhhhhhhHHHHHHHHHhhccceeeeeecc
Confidence 699999999999999765322 222222 122222 24788885322222 23345788999999999
Q ss_pred CChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEeccccC
Q psy1873 77 TSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVEASAKQD 155 (157)
Q Consensus 77 ~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~ 155 (157)
+++++.-. ..+.... ..|+|-+.+|.||.+... ....++|..+-|. ++|++|+.++
T Consensus 75 nd~~s~f~-----p~f~~~~----------------~k~vIgvVTK~DLaed~d--I~~~~~~L~eaGa~~IF~~s~~d~ 131 (148)
T COG4917 75 NDPESRFP-----PGFLDIG----------------VKKVIGVVTKADLAEDAD--ISLVKRWLREAGAEPIFETSAVDN 131 (148)
T ss_pred cCccccCC-----ccccccc----------------ccceEEEEecccccchHh--HHHHHHHHHHcCCcceEEEeccCc
Confidence 99876311 1111111 166899999999976433 3567778888887 8999999987
Q ss_pred CC
Q psy1873 156 DY 157 (157)
Q Consensus 156 ~~ 157 (157)
.|
T Consensus 132 ~g 133 (148)
T COG4917 132 QG 133 (148)
T ss_pred cc
Confidence 64
No 291
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.01 E-value=2e-09 Score=79.49 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=59.0
Q ss_pred EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh----------hhHHHHHHHHHHHHHHhccccCCCCCCCCCCC
Q psy1873 42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH----------KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCV 111 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 111 (157)
...+.+||.+|+...+..|..++.+++++|+|.|+++- ..+++....+..+.....-.
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~------------ 250 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA------------ 250 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc------------
Confidence 35679999999999999999999999999999999973 45666666777776554322
Q ss_pred CCCcEEEEEeCCCCC
Q psy1873 112 SSVPIVLVGNKKDLH 126 (157)
Q Consensus 112 ~~~p~~vv~nK~Dl~ 126 (157)
.+|++|++||.|+.
T Consensus 251 -~~piil~~NK~D~~ 264 (342)
T smart00275 251 -NTSIILFLNKIDLF 264 (342)
T ss_pred -CCcEEEEEecHHhH
Confidence 39999999999974
No 292
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.01 E-value=3.5e-10 Score=79.46 Aligned_cols=108 Identities=16% Similarity=0.122 Sum_probs=69.4
Q ss_pred CCCCCCChhhhHhhhhccccccccc--CCccceEEEEEEECCeEEEEEEEeCCCCcc-------CcCchhhhccCCCEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYD--PTIENTFVKTTRMNNQDYDLKLVDTAGQDE-------YSIFPAQYSMDIHGYV 71 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~~~~i 71 (157)
+|..|+|||||+|++.++....... .+..........+++ -.+.+||+||-.+ ++.+...++...|.++
T Consensus 45 ~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL 122 (296)
T COG3596 45 MGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVL 122 (296)
T ss_pred ecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHHhhhccEEE
Confidence 5899999999999998654432211 111111122223444 3478999998543 5556777888899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873 72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH 126 (157)
Q Consensus 72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~ 126 (157)
++.++.|+.-- --..++..+...... .|++++.|.+|..
T Consensus 123 ~l~~~~draL~-~d~~f~~dVi~~~~~---------------~~~i~~VtQ~D~a 161 (296)
T COG3596 123 WLIKADDRALG-TDEDFLRDVIILGLD---------------KRVLFVVTQADRA 161 (296)
T ss_pred EeccCCCcccc-CCHHHHHHHHHhccC---------------ceeEEEEehhhhh
Confidence 99999887521 112344444444432 7799999999974
No 293
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=1.3e-08 Score=74.58 Aligned_cols=153 Identities=18% Similarity=0.195 Sum_probs=90.1
Q ss_pred CCCCCCChhhhHhhhhccccc-ccccC-CccceEEEEEE-----------EC----CeEEEEEEEeCCC----CccCcCc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV-DSYDP-TIENTFVKTTR-----------MN----NQDYDLKLVDTAG----QDEYSIF 59 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~-~~~~~-t~~~~~~~~~~-----------~~----~~~~~~~i~D~~g----~~~~~~~ 59 (157)
||-||||||||.|.++..... ..|+. |+......... +. -....+.+.|.+| ..+-+.+
T Consensus 8 VGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs~GeGL 87 (372)
T COG0012 8 VGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGASKGEGL 87 (372)
T ss_pred ecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcccCCCc
Confidence 799999999999999987653 34443 33322211110 11 1245778999876 4555667
Q ss_pred hhhh---ccCCCEEEEEEECCChh-------------hH------------HHHHHHHHHHHHHhcccc--C--------
Q psy1873 60 PAQY---SMDIHGYVLVYSITSHK-------------SF------------EVVQILYDKLLDMTGKIQ--N-------- 101 (157)
Q Consensus 60 ~~~~---~~~~~~~ilv~d~~~~~-------------s~------------~~~~~~~~~i~~~~~~~~--~-------- 101 (157)
...| ++.+|+++.|.+..... .+ +.+.+-|.++........ +
T Consensus 88 GNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~EL~l~d~~~lek~~~r~~k~a~~~~~~~k~~~~~l~ 167 (372)
T COG0012 88 GNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTELILWDLESLEKRWERLEKRAKAGKKLDKELKEELS 167 (372)
T ss_pred chHHHHhhhhcCeEEEEEEecCCCcccCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 6665 46789999988866221 11 122222222222222111 0
Q ss_pred -------------CCCC-C-------------CCCCCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHHHhCCcEEEeccc
Q psy1873 102 -------------SSVK-S-------------PTSCVSSVPIVLVGNKKDLHMERM-ISYDEGKRLAESWKAGFVEASAK 153 (157)
Q Consensus 102 -------------~~~~-~-------------~~~~~~~~p~~vv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~e~Sa~ 153 (157)
.... . ....+...|+++++||.|...... --.+..++++...+.+++.+||+
T Consensus 168 ~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~l~llt~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~~~~vV~~sA~ 247 (372)
T COG0012 168 LLGKLEEHLEEGKPARGLDLSKWSEEDLEALASLNLLTAKPMLYVANVSEDDLANLNEYVKRLKELAAKENAEVVPVSAA 247 (372)
T ss_pred HHHhHHHHHHhhhhhhcCCcccCCHHHHHHHHHhhhhhcCCeEEEEECCcccccchhHHHHHHHHHhhhcCCcEEEeeHH
Confidence 0000 0 034467899999999999754322 11456777778888899999986
No 294
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.95 E-value=9.2e-09 Score=77.14 Aligned_cols=134 Identities=22% Similarity=0.188 Sum_probs=88.5
Q ss_pred CCChhhhHhhhhccccc------------ccc--cCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCE
Q psy1873 5 SVGKSSLSIQFVDGQFV------------DSY--DPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHG 69 (157)
Q Consensus 5 ~~GKssli~~~~~~~~~------------~~~--~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 69 (157)
--|||||+..++++.-. +.. ....|.+. .+...++.+.+++.|.||||+.+|..-....++=+|+
T Consensus 15 DHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~MVDg 94 (603)
T COG1217 15 DHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDG 94 (603)
T ss_pred cCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhhhhhhhcce
Confidence 35999999999864211 110 00111122 3333455556889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHHH------
Q psy1873 70 YVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM-ISYDEGKRLAES------ 142 (157)
Q Consensus 70 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~-~~~~~~~~~~~~------ 142 (157)
++++.|..+..= -+.+..+++.++.. .+-+||.||+|.+..++ .-.++...+...
T Consensus 95 vlLlVDA~EGpM-PQTrFVlkKAl~~g-----------------L~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~de 156 (603)
T COG1217 95 VLLLVDASEGPM-PQTRFVLKKALALG-----------------LKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDE 156 (603)
T ss_pred EEEEEEcccCCC-CchhhhHHHHHHcC-----------------CCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChh
Confidence 999999876432 23333444444443 77788999999876443 223444444443
Q ss_pred -hCCcEEEeccccCC
Q psy1873 143 -WKAGFVEASAKQDD 156 (157)
Q Consensus 143 -~~~~~~e~Sa~~~~ 156 (157)
+.+|++..||+.|.
T Consensus 157 QLdFPivYAS~~~G~ 171 (603)
T COG1217 157 QLDFPIVYASARNGT 171 (603)
T ss_pred hCCCcEEEeeccCce
Confidence 34799999999874
No 295
>PTZ00416 elongation factor 2; Provisional
Probab=98.93 E-value=3.1e-09 Score=86.68 Aligned_cols=108 Identities=18% Similarity=0.142 Sum_probs=69.6
Q ss_pred CCCCCCChhhhHhhhhcccc-cc-ccc-CCc-----------cceE---EEEEEEC--------CeEEEEEEEeCCCCcc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF-VD-SYD-PTI-----------ENTF---VKTTRMN--------NQDYDLKLVDTAGQDE 55 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~-~~-~~~-~t~-----------~~~~---~~~~~~~--------~~~~~~~i~D~~g~~~ 55 (157)
+|..++|||||+.+|+...- .. ... .+. +... ...+.++ ++.+.+.+.||||+.+
T Consensus 25 iGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~ 104 (836)
T PTZ00416 25 IAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSPGHVD 104 (836)
T ss_pred ECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcCCCHHh
Confidence 69999999999999975211 00 000 000 0000 0112222 2256789999999999
Q ss_pred CcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873 56 YSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH 126 (157)
Q Consensus 56 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~ 126 (157)
|..-....++.+|++|+|+|.++.-..+. ...+..+.... +|++++.||+|+.
T Consensus 105 f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~~~-----------------~p~iv~iNK~D~~ 157 (836)
T PTZ00416 105 FSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQER-----------------IRPVLFINKVDRA 157 (836)
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHHcC-----------------CCEEEEEEChhhh
Confidence 88777888899999999999887544332 23333333222 8999999999985
No 296
>KOG3886|consensus
Probab=98.93 E-value=1.8e-09 Score=74.11 Aligned_cols=137 Identities=20% Similarity=0.233 Sum_probs=82.1
Q ss_pred CCCCCCChhhhHhhhhccc--cc-ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCc-----CchhhhccCCCEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ--FV-DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS-----IFPAQYSMDIHGYVL 72 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~--~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----~~~~~~~~~~~~~il 72 (157)
+|.+|+|||++-..+..+- +. .....|++..+......++ ..+.+||++||+.+- .-....+++++++|.
T Consensus 10 MGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn--l~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~ 87 (295)
T KOG3886|consen 10 MGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN--LVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIY 87 (295)
T ss_pred eccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh--heeehhccCCcHHHHHHHHhhcchhhheeheeeee
Confidence 6999999999865543221 11 1122333333222212222 457899999998543 245667899999999
Q ss_pred EEECCChhhHHHH---HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc--eecH----HHHHHHHHHh
Q psy1873 73 VYSITSHKSFEVV---QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER--MISY----DEGKRLAESW 143 (157)
Q Consensus 73 v~d~~~~~s~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~--~~~~----~~~~~~~~~~ 143 (157)
+||++..+--..+ +..++.++.+.+. ..+.+...|.|+.... .... ...+.+....
T Consensus 88 vFDves~e~~~D~~~yqk~Le~ll~~SP~---------------AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~ 152 (295)
T KOG3886|consen 88 VFDVESREMEKDFHYYQKCLEALLQNSPE---------------AKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPL 152 (295)
T ss_pred eeeccchhhhhhHHHHHHHHHHHHhcCCc---------------ceEEEEEeechhcccchHHHHHHHHHHHHHHhcccc
Confidence 9999987644333 4445555555433 7799999999996432 2211 1233334444
Q ss_pred CCcEEEecccc
Q psy1873 144 KAGFVEASAKQ 154 (157)
Q Consensus 144 ~~~~~e~Sa~~ 154 (157)
++.++.+|-.+
T Consensus 153 ~~~~f~TsiwD 163 (295)
T KOG3886|consen 153 ECKCFPTSIWD 163 (295)
T ss_pred cccccccchhh
Confidence 56777777544
No 297
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.92 E-value=1.6e-08 Score=73.48 Aligned_cols=98 Identities=18% Similarity=0.128 Sum_probs=68.3
Q ss_pred EEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeC
Q psy1873 43 YDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122 (157)
Q Consensus 43 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK 122 (157)
-.|.+-||||+++|......--..||+.|++.|.- ..-.++.+ -+..|.....- ..++|+.||
T Consensus 86 RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR-~Gvl~QTr-RHs~I~sLLGI---------------rhvvvAVNK 148 (431)
T COG2895 86 RKFIIADTPGHEQYTRNMATGASTADLAILLVDAR-KGVLEQTR-RHSFIASLLGI---------------RHVVVAVNK 148 (431)
T ss_pred ceEEEecCCcHHHHhhhhhcccccccEEEEEEecc-hhhHHHhH-HHHHHHHHhCC---------------cEEEEEEee
Confidence 36789999999999876666667789999999973 22233332 23333333332 448888899
Q ss_pred CCCCCCceec----HHHHHHHHHHhCC---cEEEeccccCCC
Q psy1873 123 KDLHMERMIS----YDEGKRLAESWKA---GFVEASAKQDDY 157 (157)
Q Consensus 123 ~Dl~~~~~~~----~~~~~~~~~~~~~---~~~e~Sa~~~~~ 157 (157)
.||.+..+-. .++...|+.++++ .++..||+.|+|
T Consensus 149 mDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDN 190 (431)
T COG2895 149 MDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDN 190 (431)
T ss_pred ecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCc
Confidence 9998754432 2445678888885 699999999997
No 298
>PRK12289 GTPase RsgA; Reviewed
Probab=98.92 E-value=7e-09 Score=76.75 Aligned_cols=83 Identities=14% Similarity=0.044 Sum_probs=58.6
Q ss_pred CcCchhhhccCCCEEEEEEECCChh-hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHH
Q psy1873 56 YSIFPAQYSMDIHGYVLVYSITSHK-SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYD 134 (157)
Q Consensus 56 ~~~~~~~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~ 134 (157)
...+....+.++|.+++|+|+.++. +...+.+|+..+.. .. +|++||+||+||...... .
T Consensus 79 ~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----~~-------------ip~ILVlNK~DLv~~~~~--~ 139 (352)
T PRK12289 79 KTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES----TG-------------LEIVLCLNKADLVSPTEQ--Q 139 (352)
T ss_pred ccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CC-------------CCEEEEEEchhcCChHHH--H
Confidence 3345555688999999999999876 55566777665521 12 999999999999643221 2
Q ss_pred HHHHHHHHhCCcEEEeccccCCC
Q psy1873 135 EGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 135 ~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.........|++++.+||++|+|
T Consensus 140 ~~~~~~~~~g~~v~~iSA~tg~G 162 (352)
T PRK12289 140 QWQDRLQQWGYQPLFISVETGIG 162 (352)
T ss_pred HHHHHHHhcCCeEEEEEcCCCCC
Confidence 22233356788999999999976
No 299
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.90 E-value=6.3e-09 Score=75.24 Aligned_cols=79 Identities=15% Similarity=0.040 Sum_probs=59.4
Q ss_pred hhhhccCCCEEEEEEECCChh-hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHH
Q psy1873 60 PAQYSMDIHGYVLVYSITSHK-SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKR 138 (157)
Q Consensus 60 ~~~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~ 138 (157)
.+..+.++|.+++|+|+.++. ++..+.+|+..+... . +|+++|+||+|+.+... ......
T Consensus 72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~----~-------------ip~iIVlNK~DL~~~~~--~~~~~~ 132 (287)
T cd01854 72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA----G-------------IEPVIVLTKADLLDDEE--EELELV 132 (287)
T ss_pred ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc----C-------------CCEEEEEEHHHCCChHH--HHHHHH
Confidence 344588999999999999998 888888887765432 1 89999999999965421 122233
Q ss_pred HHHHhCCcEEEeccccCCC
Q psy1873 139 LAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 139 ~~~~~~~~~~e~Sa~~~~~ 157 (157)
+....+.+++.+||+++.|
T Consensus 133 ~~~~~g~~v~~vSA~~g~g 151 (287)
T cd01854 133 EALALGYPVLAVSAKTGEG 151 (287)
T ss_pred HHHhCCCeEEEEECCCCcc
Confidence 3455788999999999975
No 300
>PRK00098 GTPase RsgA; Reviewed
Probab=98.88 E-value=4.3e-08 Score=71.29 Aligned_cols=77 Identities=18% Similarity=0.073 Sum_probs=55.3
Q ss_pred hccCCCEEEEEEECCChhhHHH-HHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH
Q psy1873 63 YSMDIHGYVLVYSITSHKSFEV-VQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE 141 (157)
Q Consensus 63 ~~~~~~~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~ 141 (157)
...++|++++|+|++++..... +.+|+..+... . +|+++|+||+|+.+... ...+.....+
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~----~-------------ip~iIVlNK~DL~~~~~-~~~~~~~~~~ 138 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN----G-------------IKPIIVLNKIDLLDDLE-EARELLALYR 138 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC----C-------------CCEEEEEEhHHcCCCHH-HHHHHHHHHH
Confidence 3588999999999998876544 46666554321 2 89999999999953322 1223444556
Q ss_pred HhCCcEEEeccccCCC
Q psy1873 142 SWKAGFVEASAKQDDY 157 (157)
Q Consensus 142 ~~~~~~~e~Sa~~~~~ 157 (157)
..+++++++||++++|
T Consensus 139 ~~g~~v~~vSA~~g~g 154 (298)
T PRK00098 139 AIGYDVLELSAKEGEG 154 (298)
T ss_pred HCCCeEEEEeCCCCcc
Confidence 6789999999999876
No 301
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.87 E-value=5.8e-09 Score=85.19 Aligned_cols=68 Identities=19% Similarity=0.208 Sum_probs=51.9
Q ss_pred eEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEE
Q psy1873 41 QDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120 (157)
Q Consensus 41 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~ 120 (157)
..+.+.++||||+.+|..-....++.+|++|+|+|..+.-..+.. ..|..+.... +|++++.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~~~~~-----------------~p~i~~i 157 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALGER-----------------IRPVLTV 157 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHHHHCC-----------------CCEEEEE
Confidence 357789999999999988778888999999999998876443332 2333333222 8999999
Q ss_pred eCCCCC
Q psy1873 121 NKKDLH 126 (157)
Q Consensus 121 nK~Dl~ 126 (157)
||+|..
T Consensus 158 NK~D~~ 163 (843)
T PLN00116 158 NKMDRC 163 (843)
T ss_pred ECCccc
Confidence 999985
No 302
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.85 E-value=1.3e-08 Score=67.72 Aligned_cols=63 Identities=22% Similarity=0.290 Sum_probs=41.0
Q ss_pred EEEEEeCCCCcc----CcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEE
Q psy1873 44 DLKLVDTAGQDE----YSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119 (157)
Q Consensus 44 ~~~i~D~~g~~~----~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv 119 (157)
.+.|+|+||-.. ...+...++..+|++|+|.+.+..-+-.....+ .+...... ..+++|
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l-~~~~~~~~----------------~~~i~V 164 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFL-KQMLDPDK----------------SRTIFV 164 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHH-HHHHTTTC----------------SSEEEE
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHH-HHHhcCCC----------------CeEEEE
Confidence 467899999643 235577788999999999999886554433332 22222222 458888
Q ss_pred EeCC
Q psy1873 120 GNKK 123 (157)
Q Consensus 120 ~nK~ 123 (157)
.||+
T Consensus 165 ~nk~ 168 (168)
T PF00350_consen 165 LNKA 168 (168)
T ss_dssp EE-G
T ss_pred EcCC
Confidence 8884
No 303
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.83 E-value=4.3e-09 Score=77.86 Aligned_cols=104 Identities=16% Similarity=0.104 Sum_probs=52.1
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCcc--ceE--EEEEEECCeEEEEEEEeCCCCccCcC-----chhhhccCCCEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE--NTF--VKTTRMNNQDYDLKLVDTAGQDEYSI-----FPAQYSMDIHGYV 71 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~--~~~--~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~~~~~i 71 (157)
+|.+|+|||||||.|.+-.-.+.....+| +.. ....... +.-.+.+||.||...... +...-+...|.+|
T Consensus 41 ~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fi 119 (376)
T PF05049_consen 41 TGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFI 119 (376)
T ss_dssp EESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEE
T ss_pred ECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHccccccCEEE
Confidence 49999999999999975322211111111 111 1111111 212478999998543222 2233466779888
Q ss_pred EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCC
Q psy1873 72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDL 125 (157)
Q Consensus 72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl 125 (157)
++.+ +.|....-++.+...... .|+++|-+|.|.
T Consensus 120 ii~s----~rf~~ndv~La~~i~~~g----------------K~fyfVRTKvD~ 153 (376)
T PF05049_consen 120 IISS----ERFTENDVQLAKEIQRMG----------------KKFYFVRTKVDS 153 (376)
T ss_dssp EEES----SS--HHHHHHHHHHHHTT-----------------EEEEEE--HHH
T ss_pred EEeC----CCCchhhHHHHHHHHHcC----------------CcEEEEEecccc
Confidence 8755 345555555554444443 889999999995
No 304
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.80 E-value=1.7e-08 Score=81.53 Aligned_cols=108 Identities=20% Similarity=0.222 Sum_probs=69.1
Q ss_pred CCCCCCChhhhHhhhhcccc-cccc----------c-------CCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF-VDSY----------D-------PTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPA 61 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~-~~~~----------~-------~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 61 (157)
+|..++|||||+.+++...- .... . -|+.... ......++..+.+.+.||||+.+|.....
T Consensus 26 igh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df~~~~~ 105 (731)
T PRK07560 26 IAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDFGGDVT 105 (731)
T ss_pred EEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccChHHHHH
Confidence 58999999999999974211 0000 0 0011000 11112344567889999999999988788
Q ss_pred hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873 62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH 126 (157)
Q Consensus 62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~ 126 (157)
..+..+|++|+|+|....-..+ ....+....... .|.+++.||.|..
T Consensus 106 ~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~~~-----------------~~~iv~iNK~D~~ 152 (731)
T PRK07560 106 RAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALRER-----------------VKPVLFINKVDRL 152 (731)
T ss_pred HHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHHcC-----------------CCeEEEEECchhh
Confidence 8889999999999987653322 222233322221 6789999999974
No 305
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.80 E-value=3.3e-08 Score=72.57 Aligned_cols=91 Identities=16% Similarity=0.212 Sum_probs=53.7
Q ss_pred EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEe
Q psy1873 42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN 121 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~n 121 (157)
.+.+.+.||+|...-... ....+|.++++.+....+.++.+.. .+++ ..-++|.|
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-------------------~aDIiVVN 202 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-------------------LADLIVIN 202 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-------------------hhheEEee
Confidence 467889999986532222 4567899999865444444443321 1111 44589999
Q ss_pred CCCCCCCcee--cHHHHHHHHHH-------hCCcEEEeccccCCC
Q psy1873 122 KKDLHMERMI--SYDEGKRLAES-------WKAGFVEASAKQDDY 157 (157)
Q Consensus 122 K~Dl~~~~~~--~~~~~~~~~~~-------~~~~~~e~Sa~~~~~ 157 (157)
|+|+...... ...+....... ...|++.+||++|+|
T Consensus 203 KaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~G 247 (332)
T PRK09435 203 KADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEG 247 (332)
T ss_pred hhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCC
Confidence 9998653221 11122222221 125899999999986
No 306
>PRK12288 GTPase RsgA; Reviewed
Probab=98.78 E-value=3.8e-08 Score=72.80 Aligned_cols=76 Identities=14% Similarity=0.107 Sum_probs=55.8
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCcee-cHHHHHHHHHHh
Q psy1873 65 MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMI-SYDEGKRLAESW 143 (157)
Q Consensus 65 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~-~~~~~~~~~~~~ 143 (157)
.++|.+++|++.+...++..+.+|+..+.. .. +|++||+||+|+.+.... ...+........
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----~~-------------i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~ 181 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACET----LG-------------IEPLIVLNKIDLLDDEGRAFVNEQLDIYRNI 181 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHHh----cC-------------CCEEEEEECccCCCcHHHHHHHHHHHHHHhC
Confidence 458999999999988899999999764421 11 899999999999653221 112233334566
Q ss_pred CCcEEEeccccCCC
Q psy1873 144 KAGFVEASAKQDDY 157 (157)
Q Consensus 144 ~~~~~e~Sa~~~~~ 157 (157)
+++++++||++++|
T Consensus 182 g~~v~~vSA~tg~G 195 (347)
T PRK12288 182 GYRVLMVSSHTGEG 195 (347)
T ss_pred CCeEEEEeCCCCcC
Confidence 88999999999876
No 307
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.77 E-value=2.3e-08 Score=72.77 Aligned_cols=91 Identities=18% Similarity=0.224 Sum_probs=50.9
Q ss_pred EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEe
Q psy1873 42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN 121 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~n 121 (157)
.+.+.|.||+|..... ......+|.++++-. +.+.+++......+. +.|.+++.|
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~---~~~~~el~~~~~~l~-------------------~~~~ivv~N 180 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTI---PGTGDDLQGIKAGLM-------------------EIADIYVVN 180 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEec---CCccHHHHHHHHHHh-------------------hhccEEEEE
Confidence 4777889998843211 224566777777733 333344433322221 178899999
Q ss_pred CCCCCCCceecHHH------HHHHHH---HhCCcEEEeccccCCC
Q psy1873 122 KKDLHMERMISYDE------GKRLAE---SWKAGFVEASAKQDDY 157 (157)
Q Consensus 122 K~Dl~~~~~~~~~~------~~~~~~---~~~~~~~e~Sa~~~~~ 157 (157)
|+|+.......... ...+.. .++.+++.+||++|+|
T Consensus 181 K~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~G 225 (300)
T TIGR00750 181 KADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRG 225 (300)
T ss_pred cccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCC
Confidence 99986532211100 011111 1224699999999986
No 308
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.77 E-value=1.9e-08 Score=68.48 Aligned_cols=81 Identities=22% Similarity=0.059 Sum_probs=53.3
Q ss_pred CcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHH
Q psy1873 56 YSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDE 135 (157)
Q Consensus 56 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~ 135 (157)
+..++..+++.+|++++|+|++++..- |...+.... .. .|+++|+||+|+... ......
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~--~~-------------~~~ilV~NK~Dl~~~-~~~~~~ 82 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFG--GN-------------NPVILVGNKIDLLPK-DKNLVR 82 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhc--CC-------------CcEEEEEEchhcCCC-CCCHHH
Confidence 566788899999999999999876421 222221111 11 899999999998643 222333
Q ss_pred HHHHH-----HHhCC---cEEEeccccCCC
Q psy1873 136 GKRLA-----ESWKA---GFVEASAKQDDY 157 (157)
Q Consensus 136 ~~~~~-----~~~~~---~~~e~Sa~~~~~ 157 (157)
...+. +..++ .++.+||++|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~i~~vSA~~~~g 112 (190)
T cd01855 83 IKNWLRAKAAAGLGLKPKDVILISAKKGWG 112 (190)
T ss_pred HHHHHHHHHHhhcCCCcccEEEEECCCCCC
Confidence 33343 23343 689999999986
No 309
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.71 E-value=1.8e-08 Score=66.43 Aligned_cols=80 Identities=16% Similarity=0.063 Sum_probs=51.1
Q ss_pred CchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHH
Q psy1873 58 IFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGK 137 (157)
Q Consensus 58 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~ 137 (157)
.+....++++|++++|+|.+++...+.. .+...... .. .|+++|+||+|+.+.... ....
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~---~~-------------~p~iiv~NK~Dl~~~~~~--~~~~ 63 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSR--KLERYVLE---LG-------------KKLLIVLNKADLVPKEVL--EKWK 63 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHHh---CC-------------CcEEEEEEhHHhCCHHHH--HHHH
Confidence 4566778889999999999876432221 11111111 12 899999999998542221 1111
Q ss_pred HHHHHhCCcEEEeccccCCC
Q psy1873 138 RLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 138 ~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+....+.+++.+||++++|
T Consensus 64 ~~~~~~~~~~~~iSa~~~~g 83 (156)
T cd01859 64 SIKESEGIPVVYVSAKERLG 83 (156)
T ss_pred HHHHhCCCcEEEEEcccccc
Confidence 33444567899999999876
No 310
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.71 E-value=1.2e-07 Score=65.70 Aligned_cols=136 Identities=15% Similarity=0.137 Sum_probs=70.7
Q ss_pred CCCCCCChhhhHhhhhccccccccc---CCccceEEEEEEECCeEEEEEEEeCCCCccCcCc----h-------hhhccC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYD---PTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF----P-------AQYSMD 66 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----~-------~~~~~~ 66 (157)
||..|+||||++|.+++...-.... +.+.........+++.. +.++||||-.+.... . .....+
T Consensus 6 lG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g 83 (212)
T PF04548_consen 6 LGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPG 83 (212)
T ss_dssp ECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-
T ss_pred ECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHHhccCC
Confidence 6999999999999999876532221 11112223444677744 688999995322211 1 112356
Q ss_pred CCEEEEEEECCChhh-HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCcee----c---HHHHHH
Q psy1873 67 IHGYVLVYSITSHKS-FEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMI----S---YDEGKR 138 (157)
Q Consensus 67 ~~~~ilv~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~----~---~~~~~~ 138 (157)
.+++|+|+.++.... -..+..++..+....-. .-++|+.|..|......+ . ....+.
T Consensus 84 ~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~---------------k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~ 148 (212)
T PF04548_consen 84 PHAFLLVIPLGRFTEEDREVLELLQEIFGEEIW---------------KHTIVVFTHADELEDDSLEDYLKKESNEALQE 148 (212)
T ss_dssp ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGG---------------GGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEecCcchHHHHHHHHHHHHHccHHHH---------------hHhhHHhhhccccccccHHHHHhccCchhHhH
Confidence 799999999883221 12223344444332211 347888888886544331 1 112334
Q ss_pred HHHHhCCcEEEeccc
Q psy1873 139 LAESWKAGFVEASAK 153 (157)
Q Consensus 139 ~~~~~~~~~~e~Sa~ 153 (157)
+.+..+-.|...+.+
T Consensus 149 li~~c~~R~~~f~n~ 163 (212)
T PF04548_consen 149 LIEKCGGRYHVFNNK 163 (212)
T ss_dssp HHHHTTTCEEECCTT
T ss_pred HhhhcCCEEEEEecc
Confidence 455555556555443
No 311
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.71 E-value=3.7e-08 Score=70.71 Aligned_cols=44 Identities=16% Similarity=0.044 Sum_probs=31.1
Q ss_pred CcEEEEEeCCCCCCCceecHHHHHHHHHHh--CCcEEEeccccCCC
Q psy1873 114 VPIVLVGNKKDLHMERMISYDEGKRLAESW--KAGFVEASAKQDDY 157 (157)
Q Consensus 114 ~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~e~Sa~~~~~ 157 (157)
.+-++|.||+|+.+......+......+.. .++++++||++|+|
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeG 276 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEG 276 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCC
Confidence 678999999999653222334444444444 47999999999986
No 312
>KOG0458|consensus
Probab=98.69 E-value=2.8e-07 Score=70.84 Aligned_cols=105 Identities=18% Similarity=0.137 Sum_probs=69.2
Q ss_pred EECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHH---H---HHHHHHHHHHhccccCCCCCCCCCC
Q psy1873 37 RMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEV---V---QILYDKLLDMTGKIQNSSVKSPTSC 110 (157)
Q Consensus 37 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~---~---~~~~~~i~~~~~~~~~~~~~~~~~~ 110 (157)
.++.....+.|.|+||+..|-...-.-...+|+.+||.|.+- ..|+. . .+.+..++....-
T Consensus 249 ~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd~~gQtrEha~llr~Lgi------------ 315 (603)
T KOG0458|consen 249 WFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFDPGGQTREHALLLRSLGI------------ 315 (603)
T ss_pred EEecCceeEEEecCCCccccchhhhccccccceEEEEEECCc-chhhhccCCCCchHHHHHHHHHcCc------------
Confidence 445666788999999988887655555566789999999874 33332 1 2344445555442
Q ss_pred CCCCcEEEEEeCCCCCCCceec----HHHHHHHH-HHhC-----CcEEEeccccCCC
Q psy1873 111 VSSVPIVLVGNKKDLHMERMIS----YDEGKRLA-ESWK-----AGFVEASAKQDDY 157 (157)
Q Consensus 111 ~~~~p~~vv~nK~Dl~~~~~~~----~~~~~~~~-~~~~-----~~~~e~Sa~~~~~ 157 (157)
..++|+.||.|+.+=.+-. ......|. +..| +.|+.||+.+|+|
T Consensus 316 ---~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeN 369 (603)
T KOG0458|consen 316 ---SQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGEN 369 (603)
T ss_pred ---ceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCc
Confidence 5689999999986432211 22234444 4444 5799999999997
No 313
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.69 E-value=2.1e-07 Score=65.48 Aligned_cols=68 Identities=16% Similarity=0.032 Sum_probs=39.8
Q ss_pred EEEEEEeCCCCccC-------------cCchhhhccCC-CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCC
Q psy1873 43 YDLKLVDTAGQDEY-------------SIFPAQYSMDI-HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPT 108 (157)
Q Consensus 43 ~~~~i~D~~g~~~~-------------~~~~~~~~~~~-~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~ 108 (157)
..+.+.|+||-... ..+...|+++. ++++++.|....-.-+...+....+ ....
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l----d~~~-------- 192 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV----DPQG-------- 192 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH----HHcC--------
Confidence 46788999996422 12345567744 5888888875422111111222222 1122
Q ss_pred CCCCCCcEEEEEeCCCCCC
Q psy1873 109 SCVSSVPIVLVGNKKDLHM 127 (157)
Q Consensus 109 ~~~~~~p~~vv~nK~Dl~~ 127 (157)
.|+++|.||.|..+
T Consensus 193 -----~rti~ViTK~D~~~ 206 (240)
T smart00053 193 -----ERTIGVITKLDLMD 206 (240)
T ss_pred -----CcEEEEEECCCCCC
Confidence 88999999999864
No 314
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.68 E-value=6.1e-08 Score=62.89 Aligned_cols=76 Identities=14% Similarity=0.009 Sum_probs=52.4
Q ss_pred hhccCCCEEEEEEECCChhhHH--HHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHH
Q psy1873 62 QYSMDIHGYVLVYSITSHKSFE--VVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRL 139 (157)
Q Consensus 62 ~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~ 139 (157)
..++.+|++++|+|..++.+.+ .+..|+... .. . .|+++|+||+|+.+... ......+
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~-~-------------k~~iivlNK~DL~~~~~--~~~~~~~ 66 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DP-R-------------KKNILLLNKADLLTEEQ--RKAWAEY 66 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cC-C-------------CcEEEEEechhcCCHHH--HHHHHHH
Confidence 4567899999999998876543 344443322 11 2 89999999999854322 2334455
Q ss_pred HHHhCCcEEEeccccCCC
Q psy1873 140 AESWKAGFVEASAKQDDY 157 (157)
Q Consensus 140 ~~~~~~~~~e~Sa~~~~~ 157 (157)
.+..+..++.+||+++++
T Consensus 67 ~~~~~~~ii~iSa~~~~~ 84 (141)
T cd01857 67 FKKEGIVVVFFSALKENA 84 (141)
T ss_pred HHhcCCeEEEEEecCCCc
Confidence 556678899999999864
No 315
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.66 E-value=4.4e-08 Score=73.01 Aligned_cols=84 Identities=24% Similarity=0.271 Sum_probs=59.1
Q ss_pred CccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec
Q psy1873 53 QDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS 132 (157)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~ 132 (157)
.++|..+...+.+.++++++|+|+.+... .|...+.+... . .|+++|+||+|+.+ +...
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~~--~-------------~piilV~NK~DLl~-k~~~ 108 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFVG--G-------------NPVLLVGNKIDLLP-KSVN 108 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHhC--C-------------CCEEEEEEchhhCC-CCCC
Confidence 45677788888889999999999976542 24444444332 1 88999999999864 2333
Q ss_pred HHHHH----HHHHHhCC---cEEEeccccCCC
Q psy1873 133 YDEGK----RLAESWKA---GFVEASAKQDDY 157 (157)
Q Consensus 133 ~~~~~----~~~~~~~~---~~~e~Sa~~~~~ 157 (157)
.++.. .+++.+++ .++++||++|.|
T Consensus 109 ~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~g 140 (360)
T TIGR03597 109 LSKIKEWMKKRAKELGLKPVDIILVSAKKGNG 140 (360)
T ss_pred HHHHHHHHHHHHHHcCCCcCcEEEecCCCCCC
Confidence 34433 34667776 489999999986
No 316
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=2.4e-07 Score=69.24 Aligned_cols=127 Identities=16% Similarity=0.184 Sum_probs=86.5
Q ss_pred CCCCCChhhhHhhhhc--c----------ccccc-----c---cCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCch
Q psy1873 2 GYRSVGKSSLSIQFVD--G----------QFVDS-----Y---DPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFP 60 (157)
Q Consensus 2 G~~~~GKssli~~~~~--~----------~~~~~-----~---~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 60 (157)
-.|-+|||||-.+++- + +.... + ....|... ...+..+.....+.+.||||+++|+.-.
T Consensus 19 SHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGHeDFSEDT 98 (528)
T COG4108 19 SHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGHEDFSEDT 98 (528)
T ss_pred ecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCccccchhH
Confidence 4688999999999851 1 10000 0 01112222 5556666677889999999999999988
Q ss_pred hhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH
Q psy1873 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA 140 (157)
Q Consensus 61 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~ 140 (157)
...+..+|..++|+|....-.-+.+ ++.+-++-.+ +|++=..||.|-.. ..+.+...+..
T Consensus 99 YRtLtAvDsAvMVIDaAKGiE~qT~-----KLfeVcrlR~-------------iPI~TFiNKlDR~~--rdP~ELLdEiE 158 (528)
T COG4108 99 YRTLTAVDSAVMVIDAAKGIEPQTL-----KLFEVCRLRD-------------IPIFTFINKLDREG--RDPLELLDEIE 158 (528)
T ss_pred HHHHHhhheeeEEEecccCccHHHH-----HHHHHHhhcC-------------CceEEEeecccccc--CChHHHHHHHH
Confidence 8889999999999998765443333 3445554333 99999999999643 33446666777
Q ss_pred HHhCCcEE
Q psy1873 141 ESWKAGFV 148 (157)
Q Consensus 141 ~~~~~~~~ 148 (157)
+.+++..+
T Consensus 159 ~~L~i~~~ 166 (528)
T COG4108 159 EELGIQCA 166 (528)
T ss_pred HHhCccee
Confidence 77776443
No 317
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.61 E-value=8.3e-07 Score=69.95 Aligned_cols=112 Identities=12% Similarity=0.054 Sum_probs=64.4
Q ss_pred CCCCCCChhhhHhhhhcccc-ccc-c-cCCccceEEEEEEECCeEEEEEEEeCCCCccCcC-------c---hhhhcc--
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF-VDS-Y-DPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI-------F---PAQYSM-- 65 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~-~~~-~-~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~---~~~~~~-- 65 (157)
||.+||||||++|++++... ... . ..|.. ........++ ..+.++||||-..... + ...++.
T Consensus 124 VGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~ 200 (763)
T TIGR00993 124 LGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKN 200 (763)
T ss_pred ECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHHHHHhcC
Confidence 69999999999999998753 322 1 22222 1222223444 4578999999654321 1 111333
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q psy1873 66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM 127 (157)
Q Consensus 66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~ 127 (157)
.+|++|+|..++......+-..++..+.......- -.-++|+.|+.|..+
T Consensus 201 gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~I------------wk~tIVVFThgD~lp 250 (763)
T TIGR00993 201 PPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSI------------WFNAIVTLTHAASAP 250 (763)
T ss_pred CCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHh------------HcCEEEEEeCCccCC
Confidence 47999999887643332122233444433333210 044889999999764
No 318
>KOG0468|consensus
Probab=98.59 E-value=1.2e-07 Score=73.97 Aligned_cols=107 Identities=22% Similarity=0.259 Sum_probs=74.6
Q ss_pred CCCCCCChhhhHhhhhcccccccc---------cCCc------cceE---EEEEE---ECCeEEEEEEEeCCCCccCcCc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSY---------DPTI------ENTF---VKTTR---MNNQDYDLKLVDTAGQDEYSIF 59 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~---------~~t~------~~~~---~~~~~---~~~~~~~~~i~D~~g~~~~~~~ 59 (157)
+|.-+.|||+|+..|..+..+... ..+. +... ..++. .+++.+.+.+.||+|+-.|..-
T Consensus 134 ~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~DE 213 (971)
T KOG0468|consen 134 VGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFSDE 213 (971)
T ss_pred eeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcccchHH
Confidence 588999999999998765332211 1111 1111 11111 2577889999999999999988
Q ss_pred hhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCC
Q psy1873 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDL 125 (157)
Q Consensus 60 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl 125 (157)
....++-+|++++++|+.+.-.++. ++++.+.-+.. .|+++|.||.|.
T Consensus 214 ~ta~l~~sDgvVlvvDv~EGVmlnt-----Er~ikhaiq~~-------------~~i~vviNKiDR 261 (971)
T KOG0468|consen 214 TTASLRLSDGVVLVVDVAEGVMLNT-----ERIIKHAIQNR-------------LPIVVVINKVDR 261 (971)
T ss_pred HHHHhhhcceEEEEEEcccCceeeH-----HHHHHHHHhcc-------------CcEEEEEehhHH
Confidence 8888899999999999988766542 23333333333 999999999995
No 319
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.58 E-value=1e-07 Score=61.80 Aligned_cols=49 Identities=31% Similarity=0.378 Sum_probs=32.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQ 53 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~ 53 (157)
+|.+|||||||+|++++....... ...+ ......+.+++ .+.+|||||-
T Consensus 89 ~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 89 VGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred ECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEEEEeCC---CEEEEECCCc
Confidence 699999999999999987664211 1112 12233344444 4689999985
No 320
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.57 E-value=3.4e-07 Score=61.61 Aligned_cols=43 Identities=23% Similarity=0.066 Sum_probs=33.5
Q ss_pred cEEEEEeCCCCCCCceecHHHHHHHHHHhC--CcEEEeccccCCC
Q psy1873 115 PIVLVGNKKDLHMERMISYDEGKRLAESWK--AGFVEASAKQDDY 157 (157)
Q Consensus 115 p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~~ 157 (157)
.=++|.||.|+.+.-..+.+...+-+++.+ .+++++|+++|+|
T Consensus 144 aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G 188 (202)
T COG0378 144 ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEG 188 (202)
T ss_pred eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcC
Confidence 458999999997765555566666666554 7999999999986
No 321
>KOG1486|consensus
Probab=98.57 E-value=2.8e-06 Score=59.58 Aligned_cols=90 Identities=19% Similarity=0.207 Sum_probs=61.1
Q ss_pred CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC-------chhhhccCCCEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI-------FPAQYSMDIHGYVL 72 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~~~~il 72 (157)
||.|.||||||+..+...+- ...|..|+-......+.+++ ..+++.|.||.-.-.+ -.-..-+.+|.+++
T Consensus 68 IGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArtaDlilM 145 (364)
T KOG1486|consen 68 IGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILM 145 (364)
T ss_pred ecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeecccEEEE
Confidence 69999999999999986544 34566665555566677777 5679999998432221 12234567899999
Q ss_pred EEECCChhhHHHH-HHHHHHH
Q psy1873 73 VYSITSHKSFEVV-QILYDKL 92 (157)
Q Consensus 73 v~d~~~~~s~~~~-~~~~~~i 92 (157)
+.|.+..+.-..+ ...++.+
T Consensus 146 vLDatk~e~qr~~le~ELe~v 166 (364)
T KOG1486|consen 146 VLDATKSEDQREILEKELEAV 166 (364)
T ss_pred EecCCcchhHHHHHHHHHHHh
Confidence 9999987765433 3444433
No 322
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.56 E-value=4.9e-07 Score=65.20 Aligned_cols=53 Identities=19% Similarity=0.339 Sum_probs=33.4
Q ss_pred CCCCCCChhhhHhhhhcccccccc----------cCCcc-ceEEEEEEECCeEEEEEEEeCCCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSY----------DPTIE-NTFVKTTRMNNQDYDLKLVDTAGQ 53 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~----------~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~ 53 (157)
+|.+|+|||||+|.|++....... ..+.. ......+.-++....+.++||+|-
T Consensus 10 vG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGf 73 (281)
T PF00735_consen 10 VGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGF 73 (281)
T ss_dssp EECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-C
T ss_pred ECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCc
Confidence 699999999999999986553331 11111 122334445677889999999983
No 323
>KOG1532|consensus
Probab=98.52 E-value=9.9e-07 Score=62.46 Aligned_cols=16 Identities=19% Similarity=0.409 Sum_probs=14.4
Q ss_pred CCCCCCChhhhHhhhh
Q psy1873 1 MGYRSVGKSSLSIQFV 16 (157)
Q Consensus 1 vG~~~~GKssli~~~~ 16 (157)
||-.|+|||||++||.
T Consensus 25 vGMAGSGKTTF~QrL~ 40 (366)
T KOG1532|consen 25 VGMAGSGKTTFMQRLN 40 (366)
T ss_pred EecCCCCchhHHHHHH
Confidence 5889999999999985
No 324
>KOG4273|consensus
Probab=98.51 E-value=9.4e-07 Score=61.86 Aligned_cols=139 Identities=17% Similarity=0.134 Sum_probs=80.7
Q ss_pred CCCCCC--ChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECC
Q psy1873 1 MGYRSV--GKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSIT 77 (157)
Q Consensus 1 vG~~~~--GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~ 77 (157)
+|-+|| ||-+|+.|+....|.....+.-. ..+.+++........+.+.-..--+.+.--.........+++++||++
T Consensus 10 ~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vmvfdls 89 (418)
T KOG4273|consen 10 TGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVMVFDLS 89 (418)
T ss_pred ecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEEEEecc
Confidence 367788 99999999988777654333222 223443332222222222211111112211222223346899999999
Q ss_pred ChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC-----------------------------
Q psy1873 78 SHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME----------------------------- 128 (157)
Q Consensus 78 ~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~----------------------------- 128 (157)
....+..++.|+.--.-... --++.+|||.|..+.
T Consensus 90 e~s~l~alqdwl~htdinsf----------------dillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfg 153 (418)
T KOG4273|consen 90 EKSGLDALQDWLPHTDINSF----------------DILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFG 153 (418)
T ss_pred chhhhHHHHhhccccccccc----------------hhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcc
Confidence 99999999999653211111 225778899885311
Q ss_pred ---------------ceecHHHHHHHHHHhCCcEEEeccccC
Q psy1873 129 ---------------RMISYDEGKRLAESWKAGFVEASAKQD 155 (157)
Q Consensus 129 ---------------~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 155 (157)
.-.....+..||.++|+.++|.+|.+.
T Consensus 154 isetegssllgsedasldirga~lewc~e~~~efieacasn~ 195 (418)
T KOG4273|consen 154 ISETEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNE 195 (418)
T ss_pred ccccccccccccccchhhHHHHHHHHHHhcCceeeeecCCcc
Confidence 002233368899999999999998653
No 325
>KOG1144|consensus
Probab=98.47 E-value=5e-07 Score=71.39 Aligned_cols=104 Identities=21% Similarity=0.292 Sum_probs=70.0
Q ss_pred CCCCCCChhhhHhhhhcccccc----cccCCccceEEEEEE---------ECC----eEEEEEEEeCCCCccCcCchhhh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVD----SYDPTIENTFVKTTR---------MNN----QDYDLKLVDTAGQDEYSIFPAQY 63 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~----~~~~t~~~~~~~~~~---------~~~----~~~~~~i~D~~g~~~~~~~~~~~ 63 (157)
+|.-.+|||-|+..+.+..+.. .....+|.+|...-. -++ +.--+.++||||++.|..++...
T Consensus 481 lGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlRsrg 560 (1064)
T KOG1144|consen 481 LGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLRSRG 560 (1064)
T ss_pred eecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhhhcc
Confidence 5888999999999987654432 222333433311110 011 11236789999999999999999
Q ss_pred ccCCCEEEEEEECCCh---hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCC
Q psy1873 64 SMDIHGYVLVYSITSH---KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDL 125 (157)
Q Consensus 64 ~~~~~~~ilv~d~~~~---~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl 125 (157)
..-||++|+|.|+... ..++.+. ++.... +|++|+.||+|-
T Consensus 561 sslC~~aIlvvdImhGlepqtiESi~-----lLR~rk----------------tpFivALNKiDR 604 (1064)
T KOG1144|consen 561 SSLCDLAILVVDIMHGLEPQTIESIN-----LLRMRK----------------TPFIVALNKIDR 604 (1064)
T ss_pred ccccceEEEEeehhccCCcchhHHHH-----HHHhcC----------------CCeEEeehhhhh
Confidence 9999999999999853 3444332 222211 999999999995
No 326
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=1.9e-06 Score=68.96 Aligned_cols=108 Identities=20% Similarity=0.213 Sum_probs=72.5
Q ss_pred CCCCCCChhhhHhhhhccc--------------ccccc--cCCccceE---EEEEEECCeEEEEEEEeCCCCccCcCchh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ--------------FVDSY--DPTIENTF---VKTTRMNNQDYDLKLVDTAGQDEYSIFPA 61 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~--------------~~~~~--~~t~~~~~---~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 61 (157)
+|+-.+|||||..+++-.. +.+.. ....+.+. ...+.+.+ .+.+.+.||||+-+|..-..
T Consensus 16 ~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGHVDFt~EV~ 94 (697)
T COG0480 16 VAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGHVDFTIEVE 94 (697)
T ss_pred EeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCccccHHHHH
Confidence 3667899999999986321 10000 00111111 22333333 47889999999999999999
Q ss_pred hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q psy1873 62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM 127 (157)
Q Consensus 62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~ 127 (157)
..++-+|++++|+|..+.-..+.-. .|.+..... +|.+++.||.|...
T Consensus 95 rslrvlDgavvVvdaveGV~~QTEt-v~rqa~~~~-----------------vp~i~fiNKmDR~~ 142 (697)
T COG0480 95 RSLRVLDGAVVVVDAVEGVEPQTET-VWRQADKYG-----------------VPRILFVNKMDRLG 142 (697)
T ss_pred HHHHhhcceEEEEECCCCeeecHHH-HHHHHhhcC-----------------CCeEEEEECccccc
Confidence 9999999999999998765544333 233333333 99999999999753
No 327
>KOG0461|consensus
Probab=98.32 E-value=3.9e-06 Score=61.32 Aligned_cols=137 Identities=20% Similarity=0.173 Sum_probs=76.0
Q ss_pred CCCCCCChhhhHhhhhcc----cccccccCCc-c---ceEEEEEE-------ECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG----QFVDSYDPTI-E---NTFVKTTR-------MNNQDYDLKLVDTAGQDEYSIFPAQYSM 65 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~----~~~~~~~~t~-~---~~~~~~~~-------~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 65 (157)
+|.-.+|||||.+++..- .|.....++. + +.-...+. ..++...+.+.|+||+...-...-.-..
T Consensus 13 LGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRtiiggaq 92 (522)
T KOG0461|consen 13 LGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRTIIGGAQ 92 (522)
T ss_pred EeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHHHHhhhh
Confidence 477889999999998632 2221111111 1 11111122 2345677899999998653322222223
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce---ecHHHHHHHHHH
Q psy1873 66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM---ISYDEGKRLAES 142 (157)
Q Consensus 66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~---~~~~~~~~~~~~ 142 (157)
-.|..|++.|+...-.-+.+.-. ++..... ...+||.||+|+..+.+ --.+.+.+..+-
T Consensus 93 iiDlm~lviDv~kG~QtQtAEcL---iig~~~c---------------~klvvvinkid~lpE~qr~ski~k~~kk~~Kt 154 (522)
T KOG0461|consen 93 IIDLMILVIDVQKGKQTQTAECL---IIGELLC---------------KKLVVVINKIDVLPENQRASKIEKSAKKVRKT 154 (522)
T ss_pred eeeeeeEEEehhcccccccchhh---hhhhhhc---------------cceEEEEeccccccchhhhhHHHHHHHHHHHH
Confidence 34778999999875544433222 1111111 44788889988755422 112333444333
Q ss_pred h-------CCcEEEeccccC
Q psy1873 143 W-------KAGFVEASAKQD 155 (157)
Q Consensus 143 ~-------~~~~~e~Sa~~~ 155 (157)
+ +.|++++||+.|
T Consensus 155 Le~t~f~g~~PI~~vsa~~G 174 (522)
T KOG0461|consen 155 LESTGFDGNSPIVEVSAADG 174 (522)
T ss_pred HHhcCcCCCCceeEEecCCC
Confidence 3 279999999988
No 328
>KOG1954|consensus
Probab=98.30 E-value=2.1e-06 Score=63.15 Aligned_cols=112 Identities=17% Similarity=0.233 Sum_probs=71.8
Q ss_pred CCCCCCChhhhHhhhhccccccc---ccCCccceEEEEE-------------EECC------------------------
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDS---YDPTIENTFVKTT-------------RMNN------------------------ 40 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~---~~~t~~~~~~~~~-------------~~~~------------------------ 40 (157)
+|+-..||||+++-++++.+..- ..||.. .|...+ .++.
T Consensus 64 ~GqyStGKTtfi~yLle~dypg~riGpEPTtd-~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~csqmp 142 (532)
T KOG1954|consen 64 VGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTD-RFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMCSQLP 142 (532)
T ss_pred EeccccchhHHHHHHHhCCCCccccCCCCCcc-eeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHHhcCC
Confidence 68899999999999999988643 234432 222222 2220
Q ss_pred --eEEEEEEEeCCCCc-----------cCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCC
Q psy1873 41 --QDYDLKLVDTAGQD-----------EYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSP 107 (157)
Q Consensus 41 --~~~~~~i~D~~g~~-----------~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~ 107 (157)
---.+.|.|+||.- .|.....-+...+|.+|++||....+--++..+.+..+..+.
T Consensus 143 ~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~E----------- 211 (532)
T KOG1954|consen 143 NQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHE----------- 211 (532)
T ss_pred hhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCc-----------
Confidence 01356889999831 222335557788999999999876655555555444444332
Q ss_pred CCCCCCCcEEEEEeCCCCCCCce
Q psy1873 108 TSCVSSVPIVLVGNKKDLHMERM 130 (157)
Q Consensus 108 ~~~~~~~p~~vv~nK~Dl~~~~~ 130 (157)
=.+-||.||+|..+..+
T Consensus 212 ------dkiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 212 ------DKIRVVLNKADQVDTQQ 228 (532)
T ss_pred ------ceeEEEeccccccCHHH
Confidence 55889999999865433
No 329
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.29 E-value=4e-06 Score=71.13 Aligned_cols=108 Identities=20% Similarity=0.184 Sum_probs=62.8
Q ss_pred CCCCCCChhhhHhhhhcccccccc------cCCccceEEEEEEECCeEEEEEEEeCCCCcc--------CcCchhhhc--
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSY------DPTIENTFVKTTRMNNQDYDLKLVDTAGQDE--------YSIFPAQYS-- 64 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~-- 64 (157)
||++|+||||++.+- +..+.-.. ...++.+....-.+.+ .-.++|++|... ....|..++
T Consensus 117 iG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~fL~~ 192 (1169)
T TIGR03348 117 IGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLGFLGL 192 (1169)
T ss_pred ECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC---CEEEEcCCCccccCCCcccccHHHHHHHHHH
Confidence 799999999999886 33332110 0111111111111222 235899999432 122344433
Q ss_pred -------cCCCEEEEEEECCChhh-----H----HHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873 65 -------MDIHGYVLVYSITSHKS-----F----EVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH 126 (157)
Q Consensus 65 -------~~~~~~ilv~d~~~~~s-----~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~ 126 (157)
+..||+|+++|+.+.-. . ..++..+.++.....-. .||.|+.||+|+.
T Consensus 193 L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~--------------~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 193 LRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR--------------FPVYLVLTKADLL 256 (1169)
T ss_pred HHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC--------------CCEEEEEecchhh
Confidence 34699999999875421 1 23455555565555443 9999999999985
No 330
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=5.4e-06 Score=64.25 Aligned_cols=130 Identities=14% Similarity=0.040 Sum_probs=76.1
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
|||||+|||||++.++..--. .|+.+.......+.++.-++.+.+++ .+...+. ...+.+|.++|.+|..=.-
T Consensus 75 vGPpGtGKsTLirSlVrr~tk----~ti~~i~GPiTvvsgK~RRiTflEcp--~Dl~~mi-DvaKIaDLVlLlIdgnfGf 147 (1077)
T COG5192 75 VGPPGTGKSTLIRSLVRRFTK----QTIDEIRGPITVVSGKTRRITFLECP--SDLHQMI-DVAKIADLVLLLIDGNFGF 147 (1077)
T ss_pred ecCCCCChhHHHHHHHHHHHH----hhhhccCCceEEeecceeEEEEEeCh--HHHHHHH-hHHHhhheeEEEeccccCc
Confidence 699999999999998764221 33333334444667778888999987 2222222 2346679999999976432
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHH-----HHHHH-HhCCcEEEecccc
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEG-----KRLAE-SWKAGFVEASAKQ 154 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~-----~~~~~-~~~~~~~e~Sa~~ 154 (157)
.-+. ..++..+..+.. ..++-|+++.|+.........-. +.|.. ..|+.+|..|-..
T Consensus 148 EMET-mEFLnil~~HGm----------------PrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 148 EMET-MEFLNILISHGM----------------PRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred eehH-HHHHHHHhhcCC----------------CceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 1111 233333333332 45788999999965433222211 22222 2367777777543
No 331
>KOG0082|consensus
Probab=98.23 E-value=3e-06 Score=62.33 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=54.6
Q ss_pred eEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhH----------HHHHHHHHHHHHHhccccCCCCCCCCCC
Q psy1873 41 QDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSF----------EVVQILYDKLLDMTGKIQNSSVKSPTSC 110 (157)
Q Consensus 41 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~----------~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 110 (157)
+...+.++|.+||..-+.-|...|.+++++|+|.++++-+-. .+-...+..+.+..--..
T Consensus 193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~---------- 262 (354)
T KOG0082|consen 193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFAN---------- 262 (354)
T ss_pred CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccccc----------
Confidence 336789999999999999999999999999999999875432 122334444443333222
Q ss_pred CCCCcEEEEEeCCCCC
Q psy1873 111 VSSVPIVLVGNKKDLH 126 (157)
Q Consensus 111 ~~~~p~~vv~nK~Dl~ 126 (157)
.++++..||.||-
T Consensus 263 ---tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 263 ---TSIILFLNKKDLF 275 (354)
T ss_pred ---CcEEEEeecHHHH
Confidence 9999999999984
No 332
>KOG2486|consensus
Probab=98.23 E-value=1.5e-06 Score=61.53 Aligned_cols=136 Identities=18% Similarity=0.088 Sum_probs=72.6
Q ss_pred CCCCCCChhhhHhhhhccccccccc-CCccceE-EEEEEECCeEEEEEEEeCCCC----------ccCcCchhhhccCCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYD-PTIENTF-VKTTRMNNQDYDLKLVDTAGQ----------DEYSIFPAQYSMDIH 68 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~-~t~~~~~-~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~~~~~~~~~ 68 (157)
+|.+|||||+|++-+...+...... ++.+... .....++ -.+.+.|.+|- ..+..+...|+.+-+
T Consensus 142 ~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~ 218 (320)
T KOG2486|consen 142 YGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERE 218 (320)
T ss_pred ecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHhHHHHHHhhh
Confidence 4889999999999998766543222 2434322 2222232 24567899981 233445555665543
Q ss_pred EEE---EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce----ecHHHHHH---
Q psy1873 69 GYV---LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM----ISYDEGKR--- 138 (157)
Q Consensus 69 ~~i---lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~----~~~~~~~~--- 138 (157)
-.+ +..|.+. +++.++....+++.+.. +|+.+|.||+|....-. -+......
T Consensus 219 nLv~~FLLvd~sv--~i~~~D~~~i~~~ge~~----------------VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~ 280 (320)
T KOG2486|consen 219 NLVRVFLLVDASV--PIQPTDNPEIAWLGENN----------------VPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQ 280 (320)
T ss_pred hhheeeeeeeccC--CCCCCChHHHHHHhhcC----------------CCeEEeeehhhhhhhccccccCccccceeehh
Confidence 322 2334432 24443332223333322 99999999999642111 11111222
Q ss_pred ----HHHHhCCcEEEeccccCCC
Q psy1873 139 ----LAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 139 ----~~~~~~~~~~e~Sa~~~~~ 157 (157)
-+.....||+-+|+.++-|
T Consensus 281 ~l~~~~f~~~~Pw~~~Ssvt~~G 303 (320)
T KOG2486|consen 281 GLIRGVFLVDLPWIYVSSVTSLG 303 (320)
T ss_pred hccccceeccCCceeeecccccC
Confidence 2222236888899988754
No 333
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.22 E-value=2.9e-06 Score=55.99 Aligned_cols=76 Identities=16% Similarity=-0.007 Sum_probs=44.7
Q ss_pred hccCCCEEEEEEECCChhh--HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH
Q psy1873 63 YSMDIHGYVLVYSITSHKS--FEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA 140 (157)
Q Consensus 63 ~~~~~~~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~ 140 (157)
.++++|++++|.|..++.. ...+..+ +..... . .|+++|.||+|+.+...+ ......+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~----l~~~~~-~-------------~p~ilVlNKiDl~~~~~~-~~~~~~~~ 65 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEY----LKKEKP-H-------------KHLIFVLNKCDLVPTWVT-ARWVKILS 65 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHH----HHhccC-C-------------CCEEEEEEchhcCCHHHH-HHHHHHHh
Confidence 4678999999999998742 2233333 222211 1 899999999999543221 11122222
Q ss_pred HHhCCcEEEeccccCCC
Q psy1873 141 ESWKAGFVEASAKQDDY 157 (157)
Q Consensus 141 ~~~~~~~~e~Sa~~~~~ 157 (157)
+.+....+.+||+.+.|
T Consensus 66 ~~~~~~~~~iSa~~~~~ 82 (157)
T cd01858 66 KEYPTIAFHASINNPFG 82 (157)
T ss_pred cCCcEEEEEeecccccc
Confidence 22222347789998865
No 334
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.21 E-value=4e-06 Score=55.22 Aligned_cols=71 Identities=17% Similarity=0.048 Sum_probs=43.2
Q ss_pred CEEEEEEECCChhhHHHHHHHHH-HHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCc
Q psy1873 68 HGYVLVYSITSHKSFEVVQILYD-KLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAG 146 (157)
Q Consensus 68 ~~~ilv~d~~~~~s~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 146 (157)
|++++|+|..++.+.+.. ++. ...... . .|+++|.||+|+.+...+. .....+....+..
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~~---~-------------~p~IiVlNK~Dl~~~~~~~-~~~~~~~~~~~~~ 61 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIKEK---G-------------KKLILVLNKADLVPKEVLR-KWLAYLRHSYPTI 61 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHhcC---C-------------CCEEEEEechhcCCHHHHH-HHHHHHHhhCCce
Confidence 678999999887654422 222 111111 1 8999999999985432211 1112233333557
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
++.+||++|.|
T Consensus 62 ii~vSa~~~~g 72 (155)
T cd01849 62 PFKISATNGQG 72 (155)
T ss_pred EEEEeccCCcC
Confidence 89999999875
No 335
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.18 E-value=5.1e-06 Score=61.77 Aligned_cols=77 Identities=16% Similarity=-0.020 Sum_probs=51.4
Q ss_pred CCCCCCChhhhHhhhhcccc-c-ccccCCccceEEEEEEECCe---------------EEEEEEEeCCCCcc----CcCc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF-V-DSYDPTIENTFVKTTRMNNQ---------------DYDLKLVDTAGQDE----YSIF 59 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~----~~~~ 59 (157)
||.|++|||||++.+++... . ..|..|+.......+.+.+. ...+.+.|++|--. -..+
T Consensus 8 vGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g~Gl 87 (368)
T TIGR00092 8 VGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKGEGL 87 (368)
T ss_pred ECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchhcccCc
Confidence 69999999999999998765 3 34555544333344444432 24678999998533 2223
Q ss_pred h---hhhccCCCEEEEEEECC
Q psy1873 60 P---AQYSMDIHGYVLVYSIT 77 (157)
Q Consensus 60 ~---~~~~~~~~~~ilv~d~~ 77 (157)
. -..++.+|+++.|.+..
T Consensus 88 gn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 88 GNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred chHHHHHHHhCCEEEEEEeCC
Confidence 2 33467899999999875
No 336
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.18 E-value=2.7e-05 Score=57.34 Aligned_cols=53 Identities=23% Similarity=0.363 Sum_probs=36.1
Q ss_pred CCCCCCChhhhHhhhhccccccc----------ccCCccce-EEEEEEECCeEEEEEEEeCCCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDS----------YDPTIENT-FVKTTRMNNQDYDLKLVDTAGQ 53 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~----------~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~ 53 (157)
+|++|.|||||+|.|++...... ..+++... +...+.-++....+.+.||||-
T Consensus 29 ~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGf 92 (373)
T COG5019 29 VGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGF 92 (373)
T ss_pred ecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCc
Confidence 69999999999999997644322 22333322 2334444677888899999984
No 337
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.11 E-value=5.5e-06 Score=59.71 Aligned_cols=49 Identities=24% Similarity=0.388 Sum_probs=30.8
Q ss_pred CCCCCCChhhhHhhhhccccc-ccccCCccceEEEEEEECCeEEEEEEEeCCCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQ 53 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~ 53 (157)
||.||||||||+|++.+.... ....+.+.. ....+.++. .+.++||||.
T Consensus 124 vG~~nvGKSslin~l~~~~~~~~~~~~g~T~-~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 124 VGIPNVGKSTLINRLAGKKVAKVGNRPGVTK-GQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred ECCCCCCHHHHHHHHhCCCccccCCCCCeec-ceEEEEeCC---CEEEEECCCc
Confidence 699999999999999976542 222221111 122333332 3589999997
No 338
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=2.7e-05 Score=58.48 Aligned_cols=135 Identities=19% Similarity=0.109 Sum_probs=79.9
Q ss_pred CCCCCChhhhHhhhhcccccc-cccCCccceEEEEEE-ECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC-
Q psy1873 2 GYRSVGKSSLSIQFVDGQFVD-SYDPTIENTFVKTTR-MNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS- 78 (157)
Q Consensus 2 G~~~~GKssli~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~- 78 (157)
|.---|||||+..+.+..-.. ......+.+....+. .+-....+.+.|.+|++++-...-.-....|..++|.+.++
T Consensus 7 GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deG 86 (447)
T COG3276 7 GHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEG 86 (447)
T ss_pred eeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccC
Confidence 444569999999997643321 111111211111111 11223378899999999887666666677899999999864
Q ss_pred --hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh---CCcEEEeccc
Q psy1873 79 --HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESW---KAGFVEASAK 153 (157)
Q Consensus 79 --~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~e~Sa~ 153 (157)
.+..+.+ .++..... ...++|.||+|..++..+. ...+.....+ ++++|.+|++
T Consensus 87 l~~qtgEhL-----~iLdllgi---------------~~giivltk~D~~d~~r~e-~~i~~Il~~l~l~~~~i~~~s~~ 145 (447)
T COG3276 87 LMAQTGEHL-----LILDLLGI---------------KNGIIVLTKADRVDEARIE-QKIKQILADLSLANAKIFKTSAK 145 (447)
T ss_pred cchhhHHHH-----HHHHhcCC---------------CceEEEEeccccccHHHHH-HHHHHHHhhcccccccccccccc
Confidence 3444433 24444432 3469999999987643221 1122222222 3688999999
Q ss_pred cCCC
Q psy1873 154 QDDY 157 (157)
Q Consensus 154 ~~~~ 157 (157)
+|+|
T Consensus 146 ~g~G 149 (447)
T COG3276 146 TGRG 149 (447)
T ss_pred cCCC
Confidence 9985
No 339
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.10 E-value=1.1e-06 Score=61.97 Aligned_cols=88 Identities=16% Similarity=0.174 Sum_probs=49.4
Q ss_pred EEEEEEEeCCC--CccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEE
Q psy1873 42 DYDLKLVDTAG--QDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119 (157)
Q Consensus 42 ~~~~~i~D~~g--~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv 119 (157)
.+.+.|.+|.| |.+ -....-+|.+++|....-.++++.++.=+.+ ++=++|
T Consensus 121 G~D~IiiETVGvGQsE-----~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE----------------------iaDi~v 173 (266)
T PF03308_consen 121 GFDVIIIETVGVGQSE-----VDIADMADTVVLVLVPGLGDEIQAIKAGIME----------------------IADIFV 173 (266)
T ss_dssp T-SEEEEEEESSSTHH-----HHHHTTSSEEEEEEESSTCCCCCTB-TTHHH----------------------H-SEEE
T ss_pred CCCEEEEeCCCCCccH-----HHHHHhcCeEEEEecCCCccHHHHHhhhhhh----------------------hccEEE
Confidence 36667788765 433 2234567889999887777777665543333 446789
Q ss_pred EeCCCCCCCceecHHHHHHHHHHh-------CCcEEEeccccCCC
Q psy1873 120 GNKKDLHMERMISYDEGKRLAESW-------KAGFVEASAKQDDY 157 (157)
Q Consensus 120 ~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~e~Sa~~~~~ 157 (157)
.||+|...... ...+.+....-. .-|++.|||.+|+|
T Consensus 174 VNKaD~~gA~~-~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~G 217 (266)
T PF03308_consen 174 VNKADRPGADR-TVRDLRSMLHLLREREDGWRPPVLKTSALEGEG 217 (266)
T ss_dssp EE--SHHHHHH-HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBS
T ss_pred EeCCChHHHHH-HHHHHHHHHhhccccccCCCCCEEEEEeCCCCC
Confidence 99999543222 222222222211 24899999999876
No 340
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.09 E-value=2.6e-06 Score=57.98 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=17.1
Q ss_pred CCCCCCChhhhHhhhhccc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ 19 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~ 19 (157)
+|.+|||||||+|++++..
T Consensus 133 ~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 133 VGATNVGKSTLINALLKKD 151 (190)
T ss_pred EcCCCCCHHHHHHHHHHhc
Confidence 6999999999999998754
No 341
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.09 E-value=9e-06 Score=61.40 Aligned_cols=71 Identities=21% Similarity=0.255 Sum_probs=55.4
Q ss_pred EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh----------hHHHHHHHHHHHHHHhccccCCCCCCCCCCC
Q psy1873 42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK----------SFEVVQILYDKLLDMTGKIQNSSVKSPTSCV 111 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 111 (157)
...+.++|++||...+..|..+|.+++++|+|.++++-+ .+.+....+..+.....-..
T Consensus 235 ~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~----------- 303 (389)
T PF00503_consen 235 SRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKN----------- 303 (389)
T ss_dssp TEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTT-----------
T ss_pred ccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccccc-----------
Confidence 356799999999999999999999999999999987432 25555566666665544333
Q ss_pred CCCcEEEEEeCCCC
Q psy1873 112 SSVPIVLVGNKKDL 125 (157)
Q Consensus 112 ~~~p~~vv~nK~Dl 125 (157)
.|++|+.||.|+
T Consensus 304 --~~iil~lnK~D~ 315 (389)
T PF00503_consen 304 --TPIILFLNKIDL 315 (389)
T ss_dssp --SEEEEEEE-HHH
T ss_pred --CceEEeeecHHH
Confidence 999999999996
No 342
>PRK12288 GTPase RsgA; Reviewed
Probab=98.09 E-value=3.6e-06 Score=62.44 Aligned_cols=54 Identities=22% Similarity=0.304 Sum_probs=31.3
Q ss_pred CCCCCCChhhhHhhhhccccc-ccccCC---cc--ceE-EEEEEECCeEEEEEEEeCCCCccCc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV-DSYDPT---IE--NTF-VKTTRMNNQDYDLKLVDTAGQDEYS 57 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~-~~~~~t---~~--~~~-~~~~~~~~~~~~~~i~D~~g~~~~~ 57 (157)
+|.+|||||||+|+|+..... ....+. .| .+. ..-+.+++.. .++||||-..+.
T Consensus 211 vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 211 VGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred ECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 699999999999999965432 111111 11 111 1222232222 489999987654
No 343
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.08 E-value=8.3e-06 Score=59.12 Aligned_cols=50 Identities=24% Similarity=0.411 Sum_probs=31.5
Q ss_pred CCCCCCChhhhHhhhhccccc-ccccCCccceEEEEEEECCeEEEEEEEeCCCCc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQD 54 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~ 54 (157)
+|.||||||||+|++++.+.. ....+.+... ...+.++. .+.++||||--
T Consensus 127 ~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~-~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 127 IGIPNVGKSTLINRLAGKKIAKTGNRPGVTKA-QQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred ECCCCCCHHHHHHHHhcCCccccCCCCCeEEE-EEEEEeCC---cEEEEECCCcC
Confidence 699999999999999986652 2222221111 22233332 36799999973
No 344
>PRK01889 GTPase RsgA; Reviewed
Probab=98.07 E-value=1.6e-05 Score=59.33 Aligned_cols=74 Identities=12% Similarity=0.100 Sum_probs=48.3
Q ss_pred ccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-H
Q psy1873 64 SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE-S 142 (157)
Q Consensus 64 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~-~ 142 (157)
..++|.+++|.++..+-+...+.+++..+.... +|.+||.||+||.+... +....+.. .
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~-----------------i~piIVLNK~DL~~~~~---~~~~~~~~~~ 169 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESG-----------------AEPVIVLTKADLCEDAE---EKIAEVEALA 169 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcC-----------------CCEEEEEEChhcCCCHH---HHHHHHHHhC
Confidence 577899999999964444445555544443322 77899999999965311 11122221 3
Q ss_pred hCCcEEEeccccCCC
Q psy1873 143 WKAGFVEASAKQDDY 157 (157)
Q Consensus 143 ~~~~~~e~Sa~~~~~ 157 (157)
.+.+++.+||++|+|
T Consensus 170 ~g~~Vi~vSa~~g~g 184 (356)
T PRK01889 170 PGVPVLAVSALDGEG 184 (356)
T ss_pred CCCcEEEEECCCCcc
Confidence 467999999999875
No 345
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.07 E-value=7e-06 Score=60.80 Aligned_cols=67 Identities=15% Similarity=0.132 Sum_probs=45.3
Q ss_pred EEEEEEeCCCCccCcC--chhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEE
Q psy1873 43 YDLKLVDTAGQDEYSI--FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120 (157)
Q Consensus 43 ~~~~i~D~~g~~~~~~--~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~ 120 (157)
-.+.+.|+.|++.+-. ++-.+-+..|..+++...++.-+ .+.+...-+.-.. +.|++|+.
T Consensus 201 klVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkEHLgi~~a~----------------~lPviVvv 262 (527)
T COG5258 201 KLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKEHLGIALAM----------------ELPVIVVV 262 (527)
T ss_pred cEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhHhhhhhhhh----------------cCCEEEEE
Confidence 3468899999998764 34555667899999988776533 3322222232222 29999999
Q ss_pred eCCCCCC
Q psy1873 121 NKKDLHM 127 (157)
Q Consensus 121 nK~Dl~~ 127 (157)
+|+|+.+
T Consensus 263 TK~D~~~ 269 (527)
T COG5258 263 TKIDMVP 269 (527)
T ss_pred EecccCc
Confidence 9999864
No 346
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.03 E-value=3.4e-05 Score=53.99 Aligned_cols=78 Identities=18% Similarity=0.093 Sum_probs=44.6
Q ss_pred CCCCCCChhhhHhhhhcc--ccccc--ccCCccceEEEEEEEC-CeEEEEEEEeCCCCccCcC------chhhhccC--C
Q psy1873 1 MGYRSVGKSSLSIQFVDG--QFVDS--YDPTIENTFVKTTRMN-NQDYDLKLVDTAGQDEYSI------FPAQYSMD--I 67 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~--~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~------~~~~~~~~--~ 67 (157)
+|++++|||+|+|++++. .|... ..+++...+....... +....+.+.||+|...... ..-..+.. +
T Consensus 13 ~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~lls 92 (224)
T cd01851 13 FGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFALATLLS 92 (224)
T ss_pred ECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHHHHHHh
Confidence 699999999999999988 66322 2233222222222221 2346789999999654332 11222222 5
Q ss_pred CEEEEEEECCC
Q psy1873 68 HGYVLVYSITS 78 (157)
Q Consensus 68 ~~~ilv~d~~~ 78 (157)
+.+|+..+...
T Consensus 93 s~~i~n~~~~~ 103 (224)
T cd01851 93 SVLIYNSWETI 103 (224)
T ss_pred CEEEEeccCcc
Confidence 66666655543
No 347
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.01 E-value=7.9e-06 Score=60.13 Aligned_cols=48 Identities=29% Similarity=0.511 Sum_probs=31.6
Q ss_pred CCCCCCChhhhHhhhhccccc-ccccCCccceE-EEEEEECCeEEEEEEEeCCCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQ 53 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~ 53 (157)
||.||||||||||+|++.... ....| |.+- ...+.++.. +.++||||-
T Consensus 138 vG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 138 VGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred EcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEcCCC---eEEecCCCc
Confidence 699999999999999987662 22233 2221 233333332 688999994
No 348
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.01 E-value=3e-05 Score=55.72 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=48.5
Q ss_pred EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEe
Q psy1873 42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN 121 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~n 121 (157)
.+.+.|.+|.|--+-. -....-+|.++++--..-.+.++.++.=+.+ +-=++|.|
T Consensus 143 G~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimE----------------------iaDi~vIN 197 (323)
T COG1703 143 GYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIME----------------------IADIIVIN 197 (323)
T ss_pred CCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhh----------------------hhheeeEe
Confidence 3566777776532211 1223345777777554444555555433222 44688999
Q ss_pred CCCCCCCceecHHHHHH---HH----HHhC--CcEEEeccccCCC
Q psy1873 122 KKDLHMERMISYDEGKR---LA----ESWK--AGFVEASAKQDDY 157 (157)
Q Consensus 122 K~Dl~~~~~~~~~~~~~---~~----~~~~--~~~~e~Sa~~~~~ 157 (157)
|.|.... .....+... +. +..+ -+.+.+||.+|+|
T Consensus 198 KaD~~~A-~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~G 241 (323)
T COG1703 198 KADRKGA-EKAARELRSALDLLREVWRENGWRPPVVTTSALEGEG 241 (323)
T ss_pred ccChhhH-HHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCC
Confidence 9995432 222222111 11 1223 3899999999986
No 349
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.01 E-value=1.5e-05 Score=53.39 Aligned_cols=76 Identities=18% Similarity=0.046 Sum_probs=46.9
Q ss_pred hhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHH
Q psy1873 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRL 139 (157)
Q Consensus 60 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~ 139 (157)
....++.+|++++++|.+++..-... . +..... . .|+++|.||+|+.+...+ .....+
T Consensus 13 ~~~~i~~aD~il~v~D~~~~~~~~~~-~----i~~~~~--~-------------k~~ilVlNK~Dl~~~~~~--~~~~~~ 70 (171)
T cd01856 13 IKEKLKLVDLVIEVRDARIPLSSRNP-L----LEKILG--N-------------KPRIIVLNKADLADPKKT--KKWLKY 70 (171)
T ss_pred HHHHHhhCCEEEEEeeccCccCcCCh-h----hHhHhc--C-------------CCEEEEEehhhcCChHHH--HHHHHH
Confidence 45567889999999999876542211 1 122211 1 789999999998543211 111122
Q ss_pred HHHhCCcEEEeccccCCC
Q psy1873 140 AESWKAGFVEASAKQDDY 157 (157)
Q Consensus 140 ~~~~~~~~~e~Sa~~~~~ 157 (157)
....+..++.+||++++|
T Consensus 71 ~~~~~~~vi~iSa~~~~g 88 (171)
T cd01856 71 FESKGEKVLFVNAKSGKG 88 (171)
T ss_pred HHhcCCeEEEEECCCccc
Confidence 223345789999999875
No 350
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.00 E-value=2.6e-06 Score=56.24 Aligned_cols=18 Identities=39% Similarity=0.501 Sum_probs=16.7
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||+|.|+..
T Consensus 41 ~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 41 LGQSGVGKSSLINALLPE 58 (161)
T ss_dssp ECSTTSSHHHHHHHHHTS
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 599999999999999876
No 351
>KOG2655|consensus
Probab=98.00 E-value=6.3e-05 Score=55.62 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=35.3
Q ss_pred CCCCCCChhhhHhhhhccccccc---------ccCCccc-eEEEEEEECCeEEEEEEEeCCCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDS---------YDPTIEN-TFVKTTRMNNQDYDLKLVDTAGQ 53 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~---------~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~ 53 (157)
+|++|.|||||+|.|+...+... ...|... .+...+.-++....+.+.||||.
T Consensus 27 vG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGf 89 (366)
T KOG2655|consen 27 VGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGF 89 (366)
T ss_pred ecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCC
Confidence 69999999999999887644322 1112221 22333344677888899999984
No 352
>KOG0410|consensus
Probab=97.96 E-value=3.1e-06 Score=61.30 Aligned_cols=83 Identities=19% Similarity=0.180 Sum_probs=49.6
Q ss_pred CCCCCCChhhhHhhhhcccccccc--cCCccceEEEEEE-ECCeEEEEEEEeCCCCccCcCc--hh------hhccCCCE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSY--DPTIENTFVKTTR-MNNQDYDLKLVDTAGQDEYSIF--PA------QYSMDIHG 69 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~--~~t~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~~~~--~~------~~~~~~~~ 69 (157)
||..|+|||||+++|.+....... -.|.... ..... ..+. .+.+.||-|.-.--++ .. .....+|.
T Consensus 184 VGYTNaGKsTLikaLT~Aal~p~drLFATLDpT-~h~a~Lpsg~--~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadl 260 (410)
T KOG0410|consen 184 VGYTNAGKSTLIKALTKAALYPNDRLFATLDPT-LHSAHLPSGN--FVLLTDTVGFISDLPIQLVAAFQATLEEVAEADL 260 (410)
T ss_pred EeecCccHHHHHHHHHhhhcCccchhheeccch-hhhccCCCCc--EEEEeechhhhhhCcHHHHHHHHHHHHHHhhcce
Confidence 699999999999999865443221 1222211 11112 2232 3578999885332221 11 12456899
Q ss_pred EEEEEECCChhhHHHHH
Q psy1873 70 YVLVYSITSHKSFEVVQ 86 (157)
Q Consensus 70 ~ilv~d~~~~~s~~~~~ 86 (157)
++-|.|++.|+--++..
T Consensus 261 llHvvDiShP~ae~q~e 277 (410)
T KOG0410|consen 261 LLHVVDISHPNAEEQRE 277 (410)
T ss_pred EEEEeecCCccHHHHHH
Confidence 99999999997654443
No 353
>KOG3887|consensus
Probab=97.94 E-value=4.3e-05 Score=53.43 Aligned_cols=109 Identities=16% Similarity=0.123 Sum_probs=63.7
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEE---EECCeEEEEEEEeCCCCccCcC---chhhhccCCCEEEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTT---RMNNQDYDLKLVDTAGQDEYSI---FPAQYSMDIHGYVLVY 74 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~~ilv~ 74 (157)
+|...+||||+..-.....-+. .|.--+....+ .+.+.-+.+++||+|||..+.. -....++++-++|+|.
T Consensus 33 MG~rRsGKsSI~KVVFhkMsPn---eTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvI 109 (347)
T KOG3887|consen 33 MGLRRSGKSSIQKVVFHKMSPN---ETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVI 109 (347)
T ss_pred EeecccCcchhhheeeeccCCC---ceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEEEE
Confidence 5888999999865544332211 11110001111 1222456789999999977653 2566789999999999
Q ss_pred ECCChhhHH-HHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873 75 SITSHKSFE-VVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH 126 (157)
Q Consensus 75 d~~~~~s~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~ 126 (157)
|..+. +. .+.+...-+ ...... ++.+.+=|...|.|-.
T Consensus 110 DaQdd--y~eala~L~~~v-~raykv-----------Np~in~EVfiHKvDGL 148 (347)
T KOG3887|consen 110 DAQDD--YMEALARLHMTV-ERAYKV-----------NPNINFEVFIHKVDGL 148 (347)
T ss_pred echHH--HHHHHHHHHHHh-hheeec-----------CCCceEEEEEEeccCC
Confidence 97543 33 333333333 222221 3447788999999953
No 354
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.93 E-value=0.00013 Score=53.72 Aligned_cols=86 Identities=14% Similarity=0.051 Sum_probs=49.9
Q ss_pred eEEEEEEEeCCCCccCcCc-----hh-------hhccCCCEEEEEEECCChh-hHHHHHHHHHHHHHHhccccCCCCCCC
Q psy1873 41 QDYDLKLVDTAGQDEYSIF-----PA-------QYSMDIHGYVLVYSITSHK-SFEVVQILYDKLLDMTGKIQNSSVKSP 107 (157)
Q Consensus 41 ~~~~~~i~D~~g~~~~~~~-----~~-------~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~~~~ 107 (157)
..+.+.+.||+|....... .. ..-...+..++|.|.+... .+..+..+ .+..
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f----~~~~----------- 259 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF----HEAV----------- 259 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH----HhhC-----------
Confidence 3467899999997543321 11 0112456788888888432 33333222 2111
Q ss_pred CCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873 108 TSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS 151 (157)
Q Consensus 108 ~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 151 (157)
.+.-+|.||.|.... ...+...+...++|+..++
T Consensus 260 ------~~~giIlTKlD~t~~----~G~~l~~~~~~~~Pi~~v~ 293 (318)
T PRK10416 260 ------GLTGIILTKLDGTAK----GGVVFAIADELGIPIKFIG 293 (318)
T ss_pred ------CCCEEEEECCCCCCC----ccHHHHHHHHHCCCEEEEe
Confidence 345789999995332 2334555667788887777
No 355
>PRK13796 GTPase YqeH; Provisional
Probab=97.92 E-value=3.2e-05 Score=57.90 Aligned_cols=69 Identities=26% Similarity=0.246 Sum_probs=44.4
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHH----HHHHHh
Q psy1873 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGK----RLAESW 143 (157)
Q Consensus 68 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~----~~~~~~ 143 (157)
+.+++|.|+.|... .|...+..... . .|+++|+||+|+.+ +....++.. .+++.+
T Consensus 71 ~lIv~VVD~~D~~~-----s~~~~L~~~~~--~-------------kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 71 ALVVNVVDIFDFNG-----SWIPGLHRFVG--N-------------NPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred cEEEEEEECccCCC-----chhHHHHHHhC--C-------------CCEEEEEEchhhCC-CccCHHHHHHHHHHHHHhc
Confidence 38889999887442 23333333222 1 88999999999964 233333333 345666
Q ss_pred CC---cEEEeccccCCC
Q psy1873 144 KA---GFVEASAKQDDY 157 (157)
Q Consensus 144 ~~---~~~e~Sa~~~~~ 157 (157)
|+ .++.+||++|.|
T Consensus 130 g~~~~~v~~vSAk~g~g 146 (365)
T PRK13796 130 GLRPVDVVLISAQKGHG 146 (365)
T ss_pred CCCcCcEEEEECCCCCC
Confidence 76 589999999875
No 356
>KOG1143|consensus
Probab=97.89 E-value=5.4e-05 Score=56.10 Aligned_cols=96 Identities=17% Similarity=0.169 Sum_probs=59.0
Q ss_pred EEEEEEeCCCCccCcCchhhhccC--CCEEEEEEECCChhhHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEE
Q psy1873 43 YDLKLVDTAGQDEYSIFPAQYSMD--IHGYVLVYSITSHKSFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119 (157)
Q Consensus 43 ~~~~i~D~~g~~~~~~~~~~~~~~--~~~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv 119 (157)
-.+.+.|.+|+.+|....-.-+.+ .+..+++.+.... +... ++.+-.+.... +|+.|+
T Consensus 249 KlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~G--i~~tTrEHLgl~~AL~-----------------iPfFvl 309 (591)
T KOG1143|consen 249 KLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRG--ITWTTREHLGLIAALN-----------------IPFFVL 309 (591)
T ss_pred ceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCC--CccccHHHHHHHHHhC-----------------CCeEEE
Confidence 456889999999998653332222 3567777776543 2222 22222232222 999999
Q ss_pred EeCCCCCCC------------------------ceecHHHHHHHHHHh---CC-cEEEeccccCCC
Q psy1873 120 GNKKDLHME------------------------RMISYDEGKRLAESW---KA-GFVEASAKQDDY 157 (157)
Q Consensus 120 ~nK~Dl~~~------------------------~~~~~~~~~~~~~~~---~~-~~~e~Sa~~~~~ 157 (157)
.+|.|+... +.-..+++...+.+. ++ |+|.+|+.+|+|
T Consensus 310 vtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGeg 375 (591)
T KOG1143|consen 310 VTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEG 375 (591)
T ss_pred EEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccc
Confidence 999998532 123344454444443 34 999999999985
No 357
>KOG1424|consensus
Probab=97.88 E-value=1.3e-05 Score=61.22 Aligned_cols=54 Identities=28% Similarity=0.319 Sum_probs=38.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCC--ccCcC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQ--DEYSI 58 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~--~~~~~ 58 (157)
||.|||||||+||.|.+.+.+.-. .|-| ..+..++.+.. .+.+.|+||- +.|..
T Consensus 320 VGYPNVGKSSTINaLvG~KkVsVS-~TPGkTKHFQTi~ls~---~v~LCDCPGLVfPSf~~ 376 (562)
T KOG1424|consen 320 VGYPNVGKSSTINALVGRKKVSVS-STPGKTKHFQTIFLSP---SVCLCDCPGLVFPSFSP 376 (562)
T ss_pred ecCCCCchhHHHHHHhcCceeeee-cCCCCcceeEEEEcCC---CceecCCCCccccCCCc
Confidence 799999999999999998876443 3334 34455556554 3578999994 44443
No 358
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=4.7e-05 Score=54.71 Aligned_cols=136 Identities=18% Similarity=0.190 Sum_probs=74.1
Q ss_pred CCCCCCChhhhHhhhhcc----------ccc--c--cccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG----------QFV--D--SYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM 65 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~----------~~~--~--~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 65 (157)
+|.-.-|||||...+..- .+. + ......+... ..++.+.-..-.+...|+||+.+|-...-.--.
T Consensus 18 iGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvKNMItgAa 97 (394)
T COG0050 18 IGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAA 97 (394)
T ss_pred eccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHHHHhhhHH
Confidence 577889999999887421 110 0 0001112222 233333322334467899999887643222223
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCcee---cHHHHHHHHHH
Q psy1873 66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMI---SYDEGKRLAES 142 (157)
Q Consensus 66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~---~~~~~~~~~~~ 142 (157)
..|+.|||.+.+|..--+..... ++...-.- ..++++.||+|+.+.+.. -..+.+.+...
T Consensus 98 qmDgAILVVsA~dGpmPqTrEHi---LlarqvGv--------------p~ivvflnK~Dmvdd~ellelVemEvreLLs~ 160 (394)
T COG0050 98 QMDGAILVVAATDGPMPQTREHI---LLARQVGV--------------PYIVVFLNKVDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred hcCccEEEEEcCCCCCCcchhhh---hhhhhcCC--------------cEEEEEEecccccCcHHHHHHHHHHHHHHHHH
Confidence 45889999998885432222111 22222111 357888899999875442 23445666667
Q ss_pred hC-----CcEEEeccc
Q psy1873 143 WK-----AGFVEASAK 153 (157)
Q Consensus 143 ~~-----~~~~e~Sa~ 153 (157)
++ .|++.-||+
T Consensus 161 y~f~gd~~Pii~gSal 176 (394)
T COG0050 161 YGFPGDDTPIIRGSAL 176 (394)
T ss_pred cCCCCCCcceeechhh
Confidence 66 456666654
No 359
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.84 E-value=0.0012 Score=49.99 Aligned_cols=66 Identities=12% Similarity=0.223 Sum_probs=43.5
Q ss_pred EEEEEEECC----ChhhHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh
Q psy1873 69 GYVLVYSIT----SHKSFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESW 143 (157)
Q Consensus 69 ~~ilv~d~~----~~~s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~ 143 (157)
|+++.-|.+ .+++|..+. +-+.++.+.. .|++|+.|-.+-. ..-....+..+...+
T Consensus 148 GiVVTTDGSi~dipRe~Y~eAEervI~ELk~ig-----------------KPFvillNs~~P~--s~et~~L~~eL~ekY 208 (492)
T PF09547_consen 148 GIVVTTDGSITDIPRENYVEAEERVIEELKEIG-----------------KPFVILLNSTKPY--SEETQELAEELEEKY 208 (492)
T ss_pred eEEEecCCCccCCChHHHHHHHHHHHHHHHHhC-----------------CCEEEEEeCCCCC--CHHHHHHHHHHHHHh
Confidence 455555544 356666663 3344443333 9999999998842 344556778888888
Q ss_pred CCcEEEeccc
Q psy1873 144 KAGFVEASAK 153 (157)
Q Consensus 144 ~~~~~e~Sa~ 153 (157)
+.+.+.+++.
T Consensus 209 ~vpVlpvnc~ 218 (492)
T PF09547_consen 209 DVPVLPVNCE 218 (492)
T ss_pred CCcEEEeehH
Confidence 9998888764
No 360
>PRK12289 GTPase RsgA; Reviewed
Probab=97.84 E-value=2.7e-05 Score=57.96 Aligned_cols=19 Identities=37% Similarity=0.431 Sum_probs=17.0
Q ss_pred CCCCCCChhhhHhhhhccc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ 19 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~ 19 (157)
+|++|||||||+|+|+...
T Consensus 178 iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 178 AGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred EeCCCCCHHHHHHHHcCcc
Confidence 6999999999999998653
No 361
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.83 E-value=6.3e-05 Score=54.13 Aligned_cols=85 Identities=16% Similarity=0.035 Sum_probs=50.1
Q ss_pred EEEEEEEeCCCCccCcCchh------------hhccCCCEEEEEEECCCh-hhHHHHHHHHHHHHHHhccccCCCCCCCC
Q psy1873 42 DYDLKLVDTAGQDEYSIFPA------------QYSMDIHGYVLVYSITSH-KSFEVVQILYDKLLDMTGKIQNSSVKSPT 108 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~~~~------------~~~~~~~~~ilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~~~~~~ 108 (157)
.+.+.+.||+|........- ..-..++..++|.|.+.. +.++.+ ..+.+..
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~------------ 217 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV------------ 217 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC------------
Confidence 46789999999765432211 111237889999998743 223322 2222222
Q ss_pred CCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873 109 SCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS 151 (157)
Q Consensus 109 ~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 151 (157)
.+.-+|.||.|.... ...+.......++|+..++
T Consensus 218 -----~~~g~IlTKlDe~~~----~G~~l~~~~~~~~Pi~~~~ 251 (272)
T TIGR00064 218 -----GLTGIILTKLDGTAK----GGIILSIAYELKLPIKFIG 251 (272)
T ss_pred -----CCCEEEEEccCCCCC----ccHHHHHHHHHCcCEEEEe
Confidence 345789999997432 2334455556688877766
No 362
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.82 E-value=0.00018 Score=51.99 Aligned_cols=85 Identities=18% Similarity=0.040 Sum_probs=57.2
Q ss_pred CcCchhhhccCCCEEEEEEECCChh-hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHH
Q psy1873 56 YSIFPAQYSMDIHGYVLVYSITSHK-SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYD 134 (157)
Q Consensus 56 ~~~~~~~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~ 134 (157)
...+...-..+.|-.++++++.+|+ +...+.+++...-... +.-+|+.||+||.+......+
T Consensus 69 kn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~g-----------------i~pvIvlnK~DL~~~~~~~~~ 131 (301)
T COG1162 69 KNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGG-----------------IEPVIVLNKIDLLDDEEAAVK 131 (301)
T ss_pred cCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHcC-----------------CcEEEEEEccccCcchHHHHH
Confidence 3334444444567777787888776 5666666544433222 777888999999765544434
Q ss_pred HHHHHHHHhCCcEEEeccccCCC
Q psy1873 135 EGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 135 ~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+........|.+.+.+||+++++
T Consensus 132 ~~~~~y~~~gy~v~~~s~~~~~~ 154 (301)
T COG1162 132 ELLREYEDIGYPVLFVSAKNGDG 154 (301)
T ss_pred HHHHHHHhCCeeEEEecCcCccc
Confidence 56667777899999999999864
No 363
>KOG1547|consensus
Probab=97.82 E-value=0.00012 Score=51.21 Aligned_cols=53 Identities=25% Similarity=0.311 Sum_probs=34.2
Q ss_pred CCCCCCChhhhHhhhhccccccc---------ccCCccceE-EEEEEECCeEEEEEEEeCCCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDS---------YDPTIENTF-VKTTRMNNQDYDLKLVDTAGQ 53 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~---------~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~ 53 (157)
||.+|.|||||+|.+...+.... +..|+.... ...+.-++-...+.+.||+|.
T Consensus 52 VgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGf 114 (336)
T KOG1547|consen 52 VGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGF 114 (336)
T ss_pred EecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCc
Confidence 69999999999999976554331 112222111 333334566778889999983
No 364
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.81 E-value=1.5e-05 Score=57.83 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=17.4
Q ss_pred CCCCCCChhhhHhhhhcccc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF 20 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~ 20 (157)
+|++|||||||+|.+++...
T Consensus 167 ~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 167 VGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ECCCCCCHHHHHHHHhchhh
Confidence 69999999999999987543
No 365
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.80 E-value=6.3e-05 Score=54.26 Aligned_cols=76 Identities=17% Similarity=0.059 Sum_probs=48.1
Q ss_pred hhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHH
Q psy1873 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRL 139 (157)
Q Consensus 60 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~ 139 (157)
....++.+|++++|.|..++.+.+. .++.+++ . . .|+++|.||+|+.+.... .....+
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l---~--~-------------kp~IiVlNK~DL~~~~~~--~~~~~~ 72 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR---G--N-------------KPRLIVLNKADLADPAVT--KQWLKY 72 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH---C--C-------------CCEEEEEEccccCCHHHH--HHHHHH
Confidence 4556788999999999987654322 1122222 1 2 889999999998543211 111112
Q ss_pred HHHhCCcEEEeccccCCC
Q psy1873 140 AESWKAGFVEASAKQDDY 157 (157)
Q Consensus 140 ~~~~~~~~~e~Sa~~~~~ 157 (157)
....+.+++.+||+++.|
T Consensus 73 ~~~~~~~vi~iSa~~~~g 90 (276)
T TIGR03596 73 FEEKGIKALAINAKKGKG 90 (276)
T ss_pred HHHcCCeEEEEECCCccc
Confidence 233466889999999865
No 366
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.77 E-value=1.8e-05 Score=56.04 Aligned_cols=19 Identities=37% Similarity=0.326 Sum_probs=17.0
Q ss_pred CCCCCCChhhhHhhhhccc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ 19 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~ 19 (157)
+|.+|||||||+|+++...
T Consensus 126 ~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 126 AGQSGVGKSSLINALDPSV 144 (245)
T ss_pred ECCCCCCHHHHHHHHhhhh
Confidence 6999999999999998653
No 367
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=7.7e-05 Score=62.76 Aligned_cols=110 Identities=19% Similarity=0.184 Sum_probs=61.0
Q ss_pred CCCCCCChhhhHhhhhccccc--cccc-CCccceEEEEEEEC-CeEEEEEEEeCCCCccCc--------Cchhhh-----
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV--DSYD-PTIENTFVKTTRMN-NQDYDLKLVDTAGQDEYS--------IFPAQY----- 63 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~--~~~~-~t~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~--------~~~~~~----- 63 (157)
||++|+||||++..-- .+|+ .... ...... . +..++ .-.-+-.++||+|...-. ..|..+
T Consensus 131 iG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~-g-T~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLk 207 (1188)
T COG3523 131 IGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGP-G-TRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLK 207 (1188)
T ss_pred ecCCCCCcchHHhccc-ccCcchhhhccccccCC-C-CcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHHH
Confidence 7999999999986532 2221 1100 000000 0 11111 011234678998843222 234433
Q ss_pred ----ccCCCEEEEEEECCChhh---------HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q psy1873 64 ----SMDIHGYVLVYSITSHKS---------FEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM 127 (157)
Q Consensus 64 ----~~~~~~~ilv~d~~~~~s---------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~ 127 (157)
.+..||+|++.|+++.-. ...++.-+.++.+..+-. .|++|+.||.|+..
T Consensus 208 k~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~--------------~PVYl~lTk~Dll~ 270 (1188)
T COG3523 208 KYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHAR--------------LPVYLVLTKADLLP 270 (1188)
T ss_pred HhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccC--------------CceEEEEecccccc
Confidence 345699999999875322 123444556666666544 99999999999853
No 368
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.72 E-value=3e-05 Score=57.96 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=16.6
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
||.+|||||||+|++++.
T Consensus 160 vG~~nvGKStliN~l~~~ 177 (360)
T TIGR03597 160 VGVTNVGKSSLINKLLKQ 177 (360)
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 699999999999999874
No 369
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.72 E-value=5e-05 Score=54.81 Aligned_cols=54 Identities=20% Similarity=0.261 Sum_probs=30.6
Q ss_pred CCCCCCChhhhHhhhhcccc--cccccCCc--c---ceEEEEEEECCeEEEEEEEeCCCCccCc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTI--E---NTFVKTTRMNNQDYDLKLVDTAGQDEYS 57 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--~~~~~~t~--~---~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 57 (157)
+|.+|||||||+|++....- ....+... | .....-+..++.. .|.||||...+.
T Consensus 170 ~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 170 LGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred ECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 69999999999999985211 11111111 1 1122333333233 478999977654
No 370
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.68 E-value=0.00011 Score=53.35 Aligned_cols=76 Identities=18% Similarity=0.076 Sum_probs=48.6
Q ss_pred hhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHH
Q psy1873 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRL 139 (157)
Q Consensus 60 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~ 139 (157)
....++.+|++++|.|..++.+.+. .++..+.. . .|+++|.||+|+.+... ......+
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~-----~-------------kp~iiVlNK~DL~~~~~--~~~~~~~ 75 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG-----N-------------KPRLLILNKSDLADPEV--TKKWIEY 75 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC-----C-------------CCEEEEEEchhcCCHHH--HHHHHHH
Confidence 4556788999999999987654332 12222221 2 88999999999854211 1112222
Q ss_pred HHHhCCcEEEeccccCCC
Q psy1873 140 AESWKAGFVEASAKQDDY 157 (157)
Q Consensus 140 ~~~~~~~~~e~Sa~~~~~ 157 (157)
.+..+.+++.+||+++.|
T Consensus 76 ~~~~~~~vi~vSa~~~~g 93 (287)
T PRK09563 76 FEEQGIKALAINAKKGQG 93 (287)
T ss_pred HHHcCCeEEEEECCCccc
Confidence 234467789999999865
No 371
>KOG1491|consensus
Probab=97.68 E-value=8.4e-05 Score=54.31 Aligned_cols=76 Identities=16% Similarity=0.148 Sum_probs=47.2
Q ss_pred CCCCCCChhhhHhhhhccccc-ccccC-CccceEEEEEEEC---------------CeEEEEEEEeCCCC----ccCcCc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV-DSYDP-TIENTFVKTTRMN---------------NQDYDLKLVDTAGQ----DEYSIF 59 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~-~~~~~-t~~~~~~~~~~~~---------------~~~~~~~i~D~~g~----~~~~~~ 59 (157)
||-|+||||||+|.+.+.... ..+.. |+... ..++.+. .....+.++|++|- ..-..+
T Consensus 26 VGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn-~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GL 104 (391)
T KOG1491|consen 26 VGLPNVGKSTFFNALTKSKAGAANFPFCTIDPN-EARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGL 104 (391)
T ss_pred eeCCCCchHHHHHHHhcCCCCccCCCcceeccc-cceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcccCcCc
Confidence 699999999999999976553 33332 33321 1122221 12567899999873 344455
Q ss_pred hhhh---ccCCCEEEEEEECC
Q psy1873 60 PAQY---SMDIHGYVLVYSIT 77 (157)
Q Consensus 60 ~~~~---~~~~~~~ilv~d~~ 77 (157)
...| ++.+|+++-|.+..
T Consensus 105 GN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 105 GNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred hHHHHHhhhhccceeEEEEec
Confidence 4444 56678887766643
No 372
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.67 E-value=0.00017 Score=47.71 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=15.9
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|..|+|||||++++++.
T Consensus 6 ~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 6 TGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EECCCCCHHHHHHHHHhc
Confidence 489999999999998764
No 373
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.65 E-value=0.00088 Score=43.28 Aligned_cols=103 Identities=18% Similarity=0.153 Sum_probs=58.8
Q ss_pred CCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhh
Q psy1873 2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKS 81 (157)
Q Consensus 2 G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s 81 (157)
|.+|+|||++.-.+...--... ..+.-... ........+.+.++|+++.. .......+..+|.++++.+.+ ..+
T Consensus 7 ~kgg~gkt~~~~~~a~~~~~~~-~~~~~vd~--D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s 80 (139)
T cd02038 7 GKGGVGKTNISANLALALAKLG-KRVLLLDA--DLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTS 80 (139)
T ss_pred CCCCCcHHHHHHHHHHHHHHCC-CcEEEEEC--CCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhH
Confidence 5789999999766642110000 00000000 00000112678999998743 333456788899999988765 555
Q ss_pred HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCC
Q psy1873 82 FEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDL 125 (157)
Q Consensus 82 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl 125 (157)
+..+...+..+..... . .++.++.|+.+-
T Consensus 81 ~~~~~~~l~~l~~~~~--~-------------~~~~lVvN~~~~ 109 (139)
T cd02038 81 ITDAYALIKKLAKQLR--V-------------LNFRVVVNRAES 109 (139)
T ss_pred HHHHHHHHHHHHHhcC--C-------------CCEEEEEeCCCC
Confidence 6665555555543321 1 668899999974
No 374
>PRK00098 GTPase RsgA; Reviewed
Probab=97.63 E-value=4.6e-05 Score=55.55 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=16.9
Q ss_pred CCCCCCChhhhHhhhhccc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ 19 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~ 19 (157)
+|++|||||||+|.+++..
T Consensus 170 ~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 170 AGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 6999999999999998654
No 375
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.00015 Score=52.83 Aligned_cols=98 Identities=19% Similarity=0.228 Sum_probs=57.8
Q ss_pred EEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCC
Q psy1873 44 DLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKK 123 (157)
Q Consensus 44 ~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~ 123 (157)
.+.+.|.||++-.-+..-+--.-.|+.+||...+.+=.--+.++.+.. ++...- ..++|+-||.
T Consensus 87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~A-leIigi---------------k~iiIvQNKI 150 (415)
T COG5257 87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMA-LEIIGI---------------KNIIIVQNKI 150 (415)
T ss_pred EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHH-Hhhhcc---------------ceEEEEeccc
Confidence 568899999986543211111123788999998864322222222222 222222 4589999999
Q ss_pred CCCCCc--eecHHHHHHHHHHh---CCcEEEeccccCCC
Q psy1873 124 DLHMER--MISYDEGKRLAESW---KAGFVEASAKQDDY 157 (157)
Q Consensus 124 Dl~~~~--~~~~~~~~~~~~~~---~~~~~e~Sa~~~~~ 157 (157)
||.... .-..++.++|.+-- ++|++.+||..+.|
T Consensus 151 DlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~N 189 (415)
T COG5257 151 DLVSRERALENYEQIKEFVKGTVAENAPIIPISAQHKAN 189 (415)
T ss_pred ceecHHHHHHHHHHHHHHhcccccCCCceeeehhhhccC
Confidence 996532 22334455555422 47999999987765
No 376
>PRK14974 cell division protein FtsY; Provisional
Probab=97.55 E-value=0.00019 Score=53.07 Aligned_cols=84 Identities=13% Similarity=0.017 Sum_probs=48.3
Q ss_pred EEEEEEeCCCCccCcC-ch---hhh--ccCCCEEEEEEECCChhh-HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc
Q psy1873 43 YDLKLVDTAGQDEYSI-FP---AQY--SMDIHGYVLVYSITSHKS-FEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP 115 (157)
Q Consensus 43 ~~~~i~D~~g~~~~~~-~~---~~~--~~~~~~~ilv~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p 115 (157)
+.+.+.||+|...... +. ..+ .-..+.+++|.|.+..+. .+.+.. +.... ..
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~----f~~~~-----------------~~ 281 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQARE----FNEAV-----------------GI 281 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHH----HHhcC-----------------CC
Confidence 5688999999765432 11 111 124678889999875432 222322 22211 34
Q ss_pred EEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873 116 IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS 151 (157)
Q Consensus 116 ~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 151 (157)
--+|.||.|.... . .-+...+...++|+..++
T Consensus 282 ~giIlTKlD~~~~--~--G~~ls~~~~~~~Pi~~i~ 313 (336)
T PRK14974 282 DGVILTKVDADAK--G--GAALSIAYVIGKPILFLG 313 (336)
T ss_pred CEEEEeeecCCCC--c--cHHHHHHHHHCcCEEEEe
Confidence 5788999997432 1 234445555688877776
No 377
>PRK13796 GTPase YqeH; Provisional
Probab=97.55 E-value=9.6e-05 Score=55.41 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=16.4
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
||.+|||||||+|++++.
T Consensus 166 vG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 166 VGVTNVGKSTLINRIIKE 183 (365)
T ss_pred EcCCCCcHHHHHHHHHhh
Confidence 699999999999999854
No 378
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.53 E-value=0.00036 Score=53.15 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=24.2
Q ss_pred EEEEEEEeCCCCccCcCchhh------hccCCCEEEEEEECCCh
Q psy1873 42 DYDLKLVDTAGQDEYSIFPAQ------YSMDIHGYVLVYSITSH 79 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~~~~~------~~~~~~~~ilv~d~~~~ 79 (157)
.+.+.|.||+|........-. ....++-++||.|.+-.
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~G 225 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIG 225 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccC
Confidence 467899999997654321111 12245778999997644
No 379
>KOG0467|consensus
Probab=97.46 E-value=0.00036 Score=55.89 Aligned_cols=98 Identities=23% Similarity=0.318 Sum_probs=64.7
Q ss_pred CCChhhhHhhhhcc------------cccccc--cCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCE
Q psy1873 5 SVGKSSLSIQFVDG------------QFVDSY--DPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHG 69 (157)
Q Consensus 5 ~~GKssli~~~~~~------------~~~~~~--~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 69 (157)
.-|||||...|+.. +|.+.. ..+.+.+- ...+..-.+.+.+.++|.||+-+|........+=+|+
T Consensus 19 dhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevssas~l~d~ 98 (887)
T KOG0467|consen 19 DHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVSSASRLSDG 98 (887)
T ss_pred cCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhhhhhhhhcCC
Confidence 35999999988631 222111 11222111 2222333466889999999999999998888888999
Q ss_pred EEEEEECCChhhHH---HHHH-HHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCC
Q psy1873 70 YVLVYSITSHKSFE---VVQI-LYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKD 124 (157)
Q Consensus 70 ~ilv~d~~~~~s~~---~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~D 124 (157)
+++..|+...-..+ -+++ |.+. ..+++|.||+|
T Consensus 99 alvlvdvvegv~~qt~~vlrq~~~~~----------------------~~~~lvinkid 135 (887)
T KOG0467|consen 99 ALVLVDVVEGVCSQTYAVLRQAWIEG----------------------LKPILVINKID 135 (887)
T ss_pred cEEEEeeccccchhHHHHHHHHHHcc----------------------CceEEEEehhh
Confidence 99999998754433 2332 2222 66889999999
No 380
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.00034 Score=53.19 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=15.1
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
||+.||||||++.++..
T Consensus 197 vGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 197 IGPTGVGKTTTTAKLAA 213 (420)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 69999999999988754
No 381
>KOG0448|consensus
Probab=97.44 E-value=0.0022 Score=50.99 Aligned_cols=94 Identities=19% Similarity=0.250 Sum_probs=53.2
Q ss_pred EEEEEeCCCCccCc---CchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEE
Q psy1873 44 DLKLVDTAGQDEYS---IFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120 (157)
Q Consensus 44 ~~~i~D~~g~~~~~---~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~ 120 (157)
.+.+.|.||-.--. .-...+..++|++|+|....+..... .++++...... . .-+.|+-
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~s-ek~Ff~~vs~~----K-------------pniFIln 268 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLS-EKQFFHKVSEE----K-------------PNIFILN 268 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHH-HHHHHHHhhcc----C-------------CcEEEEe
Confidence 34567777754332 33556778899999997765443322 23444443333 1 5578888
Q ss_pred eCCCCCCCceecHHHHHHHHHHhC--------CcEEEeccccC
Q psy1873 121 NKKDLHMERMISYDEGKRLAESWK--------AGFVEASAKQD 155 (157)
Q Consensus 121 nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~e~Sa~~~ 155 (157)
||+|.....+-..++..+-.++++ =-+|.+||++-
T Consensus 269 nkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e~ 311 (749)
T KOG0448|consen 269 NKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKEV 311 (749)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccch
Confidence 999986543333333333322332 14778887654
No 382
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.33 E-value=0.0036 Score=42.04 Aligned_cols=86 Identities=16% Similarity=0.092 Sum_probs=59.0
Q ss_pred eEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEE
Q psy1873 41 QDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120 (157)
Q Consensus 41 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~ 120 (157)
..+.+.+.|+++.... .....+..+|.++++...+ ..++..+.+.++.+... . .|+.+|.
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~----~-------------~~~~vV~ 150 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF----G-------------IPVGVVI 150 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc----C-------------CCEEEEE
Confidence 4578899999865422 3345568899999998876 44666666666544322 1 6788999
Q ss_pred eCCCCCCCceecHHHHHHHHHHhCCcEEE
Q psy1873 121 NKKDLHMERMISYDEGKRLAESWKAGFVE 149 (157)
Q Consensus 121 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e 149 (157)
||.|.... ...+..++++..+++++-
T Consensus 151 N~~~~~~~---~~~~~~~~~~~~~~~vl~ 176 (179)
T cd03110 151 NKYDLNDE---IAEEIEDYCEEEGIPILG 176 (179)
T ss_pred eCCCCCcc---hHHHHHHHHHHcCCCeEE
Confidence 99996432 345677888888887653
No 383
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.32 E-value=0.001 Score=45.61 Aligned_cols=84 Identities=23% Similarity=0.133 Sum_probs=45.4
Q ss_pred EEEEEEeCCCCccCcCc----hhhh--ccCCCEEEEEEECCChh-hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc
Q psy1873 43 YDLKLVDTAGQDEYSIF----PAQY--SMDIHGYVLVYSITSHK-SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP 115 (157)
Q Consensus 43 ~~~~i~D~~g~~~~~~~----~~~~--~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p 115 (157)
+.+.+.||+|...+... ...+ ....+-+++|.|.+... ..+.+..+. ... .+
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~----~~~-----------------~~ 142 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFY----EAF-----------------GI 142 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHH----HHS-----------------ST
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHh----hcc-----------------cC
Confidence 56889999997654421 1111 11456678888877543 333333222 221 23
Q ss_pred EEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873 116 IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS 151 (157)
Q Consensus 116 ~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 151 (157)
--+|.||.|.... ...+..++...++|.-.+|
T Consensus 143 ~~lIlTKlDet~~----~G~~l~~~~~~~~Pi~~it 174 (196)
T PF00448_consen 143 DGLILTKLDETAR----LGALLSLAYESGLPISYIT 174 (196)
T ss_dssp CEEEEESTTSSST----THHHHHHHHHHTSEEEEEE
T ss_pred ceEEEEeecCCCC----cccceeHHHHhCCCeEEEE
Confidence 4577999996332 2345566666777654443
No 384
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.32 E-value=0.002 Score=47.52 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=15.2
Q ss_pred CCCCCChhhhHhhhhcc
Q psy1873 2 GYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 2 G~~~~GKssli~~~~~~ 18 (157)
|.-|+|||||+++++..
T Consensus 11 GFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 11 GFLGAGKTTLLRHILNE 27 (318)
T ss_pred ECCCCCHHHHHHHHHhc
Confidence 78899999999999854
No 385
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.31 E-value=0.0033 Score=49.20 Aligned_cols=85 Identities=19% Similarity=0.182 Sum_probs=44.7
Q ss_pred EEEEEEEeCCCCccCcCchh----hh--ccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc
Q psy1873 42 DYDLKLVDTAGQDEYSIFPA----QY--SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP 115 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~~~~----~~--~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p 115 (157)
.+.+.|+|++|......... .+ ... ...++|.+.+. +...+...+..+.. . .+
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~-~a~lLVLpAts--s~~Dl~eii~~f~~----~--------------~~ 486 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQ-VTSLLVLPANA--HFSDLDEVVRRFAH----A--------------KP 486 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhc-CCcEEEEECCC--ChhHHHHHHHHHHh----h--------------CC
Confidence 46788999999654332111 00 111 23456666653 23444333333321 1 45
Q ss_pred EEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873 116 IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS 151 (157)
Q Consensus 116 ~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 151 (157)
.-+|.||.|... ....+.......++|+..++
T Consensus 487 ~gvILTKlDEt~----~lG~aLsv~~~~~LPI~yvt 518 (559)
T PRK12727 487 QGVVLTKLDETG----RFGSALSVVVDHQMPITWVT 518 (559)
T ss_pred eEEEEecCcCcc----chhHHHHHHHHhCCCEEEEe
Confidence 679999999632 22455556666676554443
No 386
>KOG0447|consensus
Probab=97.26 E-value=0.0021 Score=50.26 Aligned_cols=82 Identities=16% Similarity=0.158 Sum_probs=52.2
Q ss_pred EEEEEEeCCCC-------------ccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCC
Q psy1873 43 YDLKLVDTAGQ-------------DEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTS 109 (157)
Q Consensus 43 ~~~~i~D~~g~-------------~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 109 (157)
-+..+.|.||- +....+.+.++.+.+++|+|+-=. |.+.-+.....+...+...+
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~G--------- 479 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHG--------- 479 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCC---------
Confidence 35678899983 222346778999999999997311 22222233334444444443
Q ss_pred CCCCCcEEEEEeCCCCCCCceecHHHHHHHH
Q psy1873 110 CVSSVPIVLVGNKKDLHMERMISYDEGKRLA 140 (157)
Q Consensus 110 ~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~ 140 (157)
...++|.+|.|+.+...-++...++..
T Consensus 480 ----rRTIfVLTKVDlAEknlA~PdRI~kIl 506 (980)
T KOG0447|consen 480 ----RRTIFVLTKVDLAEKNVASPSRIQQII 506 (980)
T ss_pred ----CeeEEEEeecchhhhccCCHHHHHHHH
Confidence 778999999999776555666655544
No 387
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.24 E-value=0.0026 Score=47.96 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=14.7
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
|||.||||||-+.+|..
T Consensus 209 VGPTGVGKTTTlAKLAa 225 (407)
T COG1419 209 VGPTGVGKTTTLAKLAA 225 (407)
T ss_pred ECCCCCcHHHHHHHHHH
Confidence 79999999999988753
No 388
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.23 E-value=0.0023 Score=34.62 Aligned_cols=43 Identities=16% Similarity=0.272 Sum_probs=25.7
Q ss_pred CCEEEEEEECCChhh--HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCC
Q psy1873 67 IHGYVLVYSITSHKS--FEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKD 124 (157)
Q Consensus 67 ~~~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~D 124 (157)
.+++++++|.+..-. +++=...+..+...-.. .|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~---------------~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPN---------------KPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTT---------------S-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCC---------------CCEEEEEeccC
Confidence 367999999997543 44444555566555432 99999999998
No 389
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.21 E-value=0.0047 Score=45.58 Aligned_cols=89 Identities=20% Similarity=0.135 Sum_probs=48.9
Q ss_pred EEEEEEeCCCCccCcCchhhhccC--------CCEEEEEEECCChhhHHH-HHHHHHHHHHHhccccCCCCCCCCCCCCC
Q psy1873 43 YDLKLVDTAGQDEYSIFPAQYSMD--------IHGYVLVYSITSHKSFEV-VQILYDKLLDMTGKIQNSSVKSPTSCVSS 113 (157)
Q Consensus 43 ~~~~i~D~~g~~~~~~~~~~~~~~--------~~~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 113 (157)
....++++.|-..-.+....++.. .|+++-+.|...-..... +... +..+..
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~---~~~Qia---------------- 145 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAEL---AEDQLA---------------- 145 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHH---HHHHHH----------------
Confidence 445667777755443333333221 266788888654433221 2111 222221
Q ss_pred CcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CcEEEecc
Q psy1873 114 VPIVLVGNKKDLHMERMISYDEGKRLAESWK--AGFVEASA 152 (157)
Q Consensus 114 ~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~e~Sa 152 (157)
..=+|+.||.|+.+... .+..+...+.++ ++++++|.
T Consensus 146 ~AD~ivlNK~Dlv~~~~--l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 146 FADVIVLNKTDLVDAEE--LEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred hCcEEEEecccCCCHHH--HHHHHHHHHHhCCCCeEEEccc
Confidence 34589999999987654 344555555555 67887775
No 390
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.21 E-value=0.0021 Score=42.05 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=24.6
Q ss_pred EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhH
Q psy1873 42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSF 82 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~ 82 (157)
.+.+.+.|++|.... ...++..+|-++++-..+-.+.+
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y 128 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDI 128 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHH
Confidence 467888999885422 23477888888887665533333
No 391
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.19 E-value=0.0032 Score=37.26 Aligned_cols=75 Identities=15% Similarity=0.113 Sum_probs=44.3
Q ss_pred CCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc-hhhhccCCCEEEEEEECCChh
Q psy1873 2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF-PAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 2 G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~~~~ilv~d~~~~~ 80 (157)
|.+|+|||++...+...--.. + .+...++ .+.+.|+++....... .......++.++++.+.+ ..
T Consensus 6 g~~G~Gktt~~~~l~~~l~~~------g---~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~-~~ 71 (99)
T cd01983 6 GKGGVGKTTLAANLAAALAKR------G---KRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPE-AL 71 (99)
T ss_pred CCCCCCHHHHHHHHHHHHHHC------C---CeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCc-hh
Confidence 677999999998876432110 1 1222233 5788999876543332 244556778888887765 44
Q ss_pred hHHHHHHHHH
Q psy1873 81 SFEVVQILYD 90 (157)
Q Consensus 81 s~~~~~~~~~ 90 (157)
+.........
T Consensus 72 ~~~~~~~~~~ 81 (99)
T cd01983 72 AVLGARRLTE 81 (99)
T ss_pred hHHHHHHHHH
Confidence 4444444433
No 392
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.18 E-value=0.0032 Score=47.30 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=15.3
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++||||||++.+|..
T Consensus 143 vGptGvGKTTtiakLA~ 159 (374)
T PRK14722 143 MGPTGVGKTTTTAKLAA 159 (374)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 69999999999999864
No 393
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.18 E-value=0.00087 Score=44.18 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=34.1
Q ss_pred CCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCC
Q psy1873 2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTA 51 (157)
Q Consensus 2 G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~ 51 (157)
|+|||||||++.++.+.-.... .+++-.+...+.-+++..=|.|.|+.
T Consensus 12 G~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 12 GRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred CCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeeeEEEEcc
Confidence 8999999999999874322211 33445556677777887788888876
No 394
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.15 E-value=0.0019 Score=43.58 Aligned_cols=83 Identities=12% Similarity=0.074 Sum_probs=44.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEE--EEEeCC-CCccCcCchhhhccCCCEEEE--EEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDL--KLVDTA-GQDEYSIFPAQYSMDIHGYVL--VYS 75 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--~i~D~~-g~~~~~~~~~~~~~~~~~~il--v~d 75 (157)
+|+.|+|||||++.+.+-. .++.|.. .+++..+-+ +-.+.+ |+.+.-.+...+..+.+++++ -..
T Consensus 31 ~G~nGsGKSTLl~~l~Gl~-----~p~~G~i-----~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 31 VGPNGTGKTTAVKILAGQL-----IPNGDND-----EWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred ECCCCChHHHHHHHHHcCC-----CCCCcEE-----EECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 6999999999999987642 2332321 222222111 111133 334444556667777776555 112
Q ss_pred CCChhhHHHHHHHHHHHH
Q psy1873 76 ITSHKSFEVVQILYDKLL 93 (157)
Q Consensus 76 ~~~~~s~~~~~~~~~~i~ 93 (157)
.-|+.+-+.+..++.++.
T Consensus 101 ~LD~~~~~~l~~~l~~~~ 118 (177)
T cd03222 101 YLDIEQRLNAARAIRRLS 118 (177)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 234555555666655553
No 395
>KOG0460|consensus
Probab=97.15 E-value=0.0034 Score=46.29 Aligned_cols=136 Identities=18% Similarity=0.181 Sum_probs=72.9
Q ss_pred CCCCCCChhhhHhhhhc-------c---ccc--ccc--cCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVD-------G---QFV--DSY--DPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM 65 (157)
Q Consensus 1 vG~~~~GKssli~~~~~-------~---~~~--~~~--~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 65 (157)
||.-.-|||||-..+.. . +|. +.. ....+... ..++.+.-..-.+--.|+||+.+|-...-.--.
T Consensus 60 IGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIKNMItGaa 139 (449)
T KOG0460|consen 60 IGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIKNMITGAA 139 (449)
T ss_pred cccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHHHhhcCcc
Confidence 57778899999887752 1 111 000 01111111 222233222222345799999887643222223
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce---ecHHHHHHHHHH
Q psy1873 66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM---ISYDEGKRLAES 142 (157)
Q Consensus 66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~---~~~~~~~~~~~~ 142 (157)
.-|+.|+|...+|..=-+ .++.+ ++...-.. ..++|..||.|+.++.+ +-+-+.+++..+
T Consensus 140 qMDGaILVVaatDG~MPQ-TrEHl--LLArQVGV--------------~~ivvfiNKvD~V~d~e~leLVEmE~RElLse 202 (449)
T KOG0460|consen 140 QMDGAILVVAATDGPMPQ-TREHL--LLARQVGV--------------KHIVVFINKVDLVDDPEMLELVEMEIRELLSE 202 (449)
T ss_pred ccCceEEEEEcCCCCCcc-hHHHH--HHHHHcCC--------------ceEEEEEecccccCCHHHHHHHHHHHHHHHHH
Confidence 348899999999854322 12211 12222111 44888999999975443 223346667777
Q ss_pred hC-----CcEEEeccc
Q psy1873 143 WK-----AGFVEASAK 153 (157)
Q Consensus 143 ~~-----~~~~e~Sa~ 153 (157)
+| +|++.-||+
T Consensus 203 ~gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 203 FGFDGDNTPVIRGSAL 218 (449)
T ss_pred cCCCCCCCCeeecchh
Confidence 76 577777664
No 396
>KOG1487|consensus
Probab=97.09 E-value=0.0016 Score=46.30 Aligned_cols=83 Identities=22% Similarity=0.201 Sum_probs=52.5
Q ss_pred CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCccC----cCc---hhhhccCCCEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY----SIF---PAQYSMDIHGYVL 72 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~---~~~~~~~~~~~il 72 (157)
+|.|.+||||++..+.+-.- ...|..|.-......+.+++ ..+++.|.||.-+- ..- .-...+.|+.+++
T Consensus 65 vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartcnli~~ 142 (358)
T KOG1487|consen 65 VGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFI 142 (358)
T ss_pred EecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecccEEEE
Confidence 58899999999999986433 22333333222233333444 56899999984322 111 2223567899999
Q ss_pred EEECCChhhHHHH
Q psy1873 73 VYSITSHKSFEVV 85 (157)
Q Consensus 73 v~d~~~~~s~~~~ 85 (157)
|.|+-.|-+-..+
T Consensus 143 vld~~kp~~hk~~ 155 (358)
T KOG1487|consen 143 VLDVLKPLSHKKI 155 (358)
T ss_pred EeeccCcccHHHH
Confidence 9999988765544
No 397
>KOG0099|consensus
Probab=97.02 E-value=0.0032 Score=44.81 Aligned_cols=79 Identities=16% Similarity=0.250 Sum_probs=53.0
Q ss_pred EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh----------hHHHHHHHHHHHHHHhccccCC
Q psy1873 33 VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK----------SFEVVQILYDKLLDMTGKIQNS 102 (157)
Q Consensus 33 ~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~~ 102 (157)
...+.++- +.++.+|.+||.+-+..|-..|.++-++|+|...++-+ .+++....++.+-+..
T Consensus 194 et~FqVdk--v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNR------ 265 (379)
T KOG0099|consen 194 ETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNR------ 265 (379)
T ss_pred eEEEeccc--cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhh------
Confidence 34444443 66899999999999999999999999999988765421 1222222222222211
Q ss_pred CCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873 103 SVKSPTSCVSSVPIVLVGNKKDLH 126 (157)
Q Consensus 103 ~~~~~~~~~~~~p~~vv~nK~Dl~ 126 (157)
| +..+.+++..||.|+.
T Consensus 266 w-------L~tisvIlFLNKqDll 282 (379)
T KOG0099|consen 266 W-------LRTISVILFLNKQDLL 282 (379)
T ss_pred H-------HhhhheeEEecHHHHH
Confidence 1 1228899999999984
No 398
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.94 E-value=0.018 Score=38.34 Aligned_cols=83 Identities=16% Similarity=0.025 Sum_probs=48.5
Q ss_pred EEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCC
Q psy1873 44 DLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKK 123 (157)
Q Consensus 44 ~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~ 123 (157)
.+.++|+++.... .....+..+|.+|++.+.+ ..++..+...+..+... . . ....++.|+.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~-~--~-------------~~~~iv~N~~ 124 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPE-ISSLRDADRVKGLLEAL-G--I-------------KVVGVIVNRV 124 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCC-cchHHHHHHHHHHHHHc-C--C-------------ceEEEEEeCC
Confidence 5789999876433 2344567889999987765 44555555554444331 1 1 4467899999
Q ss_pred CCCCCceecHHHHHHHHHHhCCcE
Q psy1873 124 DLHMERMISYDEGKRLAESWKAGF 147 (157)
Q Consensus 124 Dl~~~~~~~~~~~~~~~~~~~~~~ 147 (157)
+.... ...+....+.+.++.++
T Consensus 125 ~~~~~--~~~~~~~~~~~~~~~~v 146 (179)
T cd02036 125 RPDMV--EGGDMVEDIEEILGVPL 146 (179)
T ss_pred ccccc--chhhHHHHHHHHhCCCE
Confidence 85322 22222344445556543
No 399
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.93 E-value=0.0031 Score=48.29 Aligned_cols=87 Identities=13% Similarity=-0.018 Sum_probs=49.5
Q ss_pred EEEEEEEeCCCCccCcCchhh------hccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc
Q psy1873 42 DYDLKLVDTAGQDEYSIFPAQ------YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP 115 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~~~~~------~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p 115 (157)
.+.+.|.||+|........-. ..-..+.+++|.|.+.. +.+......+.... ..
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v-----------------~i 241 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL-----------------GL 241 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC-----------------CC
Confidence 456899999997544321111 12246778999997643 33333333343222 22
Q ss_pred EEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEecc
Q psy1873 116 IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152 (157)
Q Consensus 116 ~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 152 (157)
.=+|.||.|.... ...+...+...++|+..++.
T Consensus 242 ~giIlTKlD~~~~----~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 242 TGVVLTKLDGDAR----GGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred CEEEEeCccCccc----ccHHHHHHHHHCcCEEEEeC
Confidence 3577899995321 12366677777877665543
No 400
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.87 E-value=0.0017 Score=43.47 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=13.9
Q ss_pred CCCCCChhhhHhhhhc
Q psy1873 2 GYRSVGKSSLSIQFVD 17 (157)
Q Consensus 2 G~~~~GKssli~~~~~ 17 (157)
|++|+|||||+++++.
T Consensus 6 G~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 6 GPPGVGKTTLLKKVIE 21 (168)
T ss_dssp S-TTSSHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHH
Confidence 8999999999999875
No 401
>KOG3929|consensus
Probab=96.84 E-value=0.00025 Score=50.17 Aligned_cols=75 Identities=12% Similarity=0.155 Sum_probs=44.2
Q ss_pred CChhhhHhhhhcccccccccCCccceEEEEEEECC--eEEEEEEEeCCCCccCcCchhh-----hccCCCEEEEEEECCC
Q psy1873 6 VGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNN--QDYDLKLVDTAGQDEYSIFPAQ-----YSMDIHGYVLVYSITS 78 (157)
Q Consensus 6 ~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~i~D~~g~~~~~~~~~~-----~~~~~~~~ilv~d~~~ 78 (157)
-|||++|+++...... ...+|..-+|..-....+ .+-...+|+.+|......+..- -++.+ .+|++.|+++
T Consensus 54 ~~~tt~I~~~FdR~e~-~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~~-slIL~LDls~ 131 (363)
T KOG3929|consen 54 GGKTTIILRCFDRDEP-PKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRTF-SLILVLDLSK 131 (363)
T ss_pred CceeEeehhhcCcccC-CCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhhh-hheeeeecCC
Confidence 4568888888765433 334666555533333322 2334578999987655544222 22222 4788889999
Q ss_pred hhhH
Q psy1873 79 HKSF 82 (157)
Q Consensus 79 ~~s~ 82 (157)
++.+
T Consensus 132 p~~~ 135 (363)
T KOG3929|consen 132 PNDL 135 (363)
T ss_pred hHHH
Confidence 8764
No 402
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.83 E-value=0.011 Score=45.38 Aligned_cols=85 Identities=14% Similarity=-0.023 Sum_probs=46.1
Q ss_pred EEEEEEeCCCCccCcCch-----h-hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcE
Q psy1873 43 YDLKLVDTAGQDEYSIFP-----A-QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPI 116 (157)
Q Consensus 43 ~~~~i~D~~g~~~~~~~~-----~-~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~ 116 (157)
..+.|.||+|......-. . ...-.++.+++|.|.+... ++......+.... ..-
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l-----------------~i~ 235 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV-----------------GIG 235 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC-----------------CCC
Confidence 367899999976543211 1 1133567889999976642 2222222221111 223
Q ss_pred EEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873 117 VLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS 151 (157)
Q Consensus 117 ~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 151 (157)
-+|.||.|.... .--+...+...++|+..++
T Consensus 236 gvIlTKlD~~a~----~G~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 236 GIIITKLDGTAK----GGGALSAVAETGAPIKFIG 266 (437)
T ss_pred EEEEecccCCCc----ccHHHHHHHHHCcCEEEEe
Confidence 577899996321 1335555566676655443
No 403
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.82 E-value=0.018 Score=44.17 Aligned_cols=85 Identities=18% Similarity=0.056 Sum_probs=46.0
Q ss_pred EEEEEEEeCCCCccCcC----chhhhcc---CCCEEEEEEECCC-hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCC
Q psy1873 42 DYDLKLVDTAGQDEYSI----FPAQYSM---DIHGYVLVYSITS-HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSS 113 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~----~~~~~~~---~~~~~ilv~d~~~-~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 113 (157)
.+.+.+.|++|...... ....++. ...-+.+|.+.+- ...+..+...+. ..
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~-------~~-------------- 357 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS-------RL-------------- 357 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC-------CC--------------
Confidence 36788999999755431 1222333 2234566677653 334444332221 11
Q ss_pred CcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873 114 VPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS 151 (157)
Q Consensus 114 ~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 151 (157)
.+--+|.||.|-.. . ......+....++|+..++
T Consensus 358 ~~~~vI~TKlDet~--~--~G~i~~~~~~~~lPv~yit 391 (424)
T PRK05703 358 PLDGLIFTKLDETS--S--LGSILSLLIESGLPISYLT 391 (424)
T ss_pred CCCEEEEecccccc--c--ccHHHHHHHHHCCCEEEEe
Confidence 22368899999632 1 2346667777787655444
No 404
>KOG1534|consensus
Probab=96.80 E-value=0.002 Score=44.38 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=14.6
Q ss_pred CCCCCCChhhhHhhhh
Q psy1873 1 MGYRSVGKSSLSIQFV 16 (157)
Q Consensus 1 vG~~~~GKssli~~~~ 16 (157)
+||.|+||||+++.+.
T Consensus 9 ~GpAgSGKSTyC~~~~ 24 (273)
T KOG1534|consen 9 MGPAGSGKSTYCSSMY 24 (273)
T ss_pred EccCCCCcchHHHHHH
Confidence 5999999999999885
No 405
>KOG0465|consensus
Probab=96.80 E-value=0.0025 Score=50.14 Aligned_cols=70 Identities=20% Similarity=0.301 Sum_probs=52.6
Q ss_pred eEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEE
Q psy1873 41 QDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120 (157)
Q Consensus 41 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~ 120 (157)
+.+.+.++||||+-+|.--....++--|+.++++|....-.-+... .|.++.... +|.+...
T Consensus 102 ~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~t-V~rQ~~ry~-----------------vP~i~Fi 163 (721)
T KOG0465|consen 102 RDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTET-VWRQMKRYN-----------------VPRICFI 163 (721)
T ss_pred ccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHH-HHHHHHhcC-----------------CCeEEEE
Confidence 4688999999999998877778888889999988877654433333 344444443 9999999
Q ss_pred eCCCCCCC
Q psy1873 121 NKKDLHME 128 (157)
Q Consensus 121 nK~Dl~~~ 128 (157)
||.|....
T Consensus 164 NKmDRmGa 171 (721)
T KOG0465|consen 164 NKMDRMGA 171 (721)
T ss_pred ehhhhcCC
Confidence 99997543
No 406
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.0006 Score=47.08 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.9
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
|||+|||||||++.|-.
T Consensus 39 IGPSGcGKST~LR~lNR 55 (253)
T COG1117 39 IGPSGCGKSTLLRCLNR 55 (253)
T ss_pred ECCCCcCHHHHHHHHHh
Confidence 69999999999988743
No 407
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.00064 Score=47.82 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=15.5
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
||++|||||||++-+.+
T Consensus 35 lGpSGcGKSTLLriiAG 51 (248)
T COG1116 35 LGPSGCGKSTLLRLIAG 51 (248)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 69999999999999865
No 408
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.76 E-value=0.0052 Score=39.04 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=16.5
Q ss_pred CCCCCCChhhhHhhhhccc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ 19 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~ 19 (157)
.|++|+|||++++.+.+.-
T Consensus 25 ~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 25 YGPPGTGKTTLARAIANEL 43 (151)
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998643
No 409
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.76 E-value=0.0098 Score=44.87 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=14.5
Q ss_pred CCCCCCChhhhHhhhh
Q psy1873 1 MGYRSVGKSSLSIQFV 16 (157)
Q Consensus 1 vG~~~~GKssli~~~~ 16 (157)
+|+.||||||++.++.
T Consensus 212 vGptGvGKTTt~akLA 227 (407)
T PRK12726 212 IGQTGVGKTTTLVKLG 227 (407)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 6999999999998885
No 410
>KOG0463|consensus
Probab=96.76 E-value=0.00059 Score=50.88 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=13.8
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
||+-.+|||||+--+..
T Consensus 139 VGNVDAGKSTLLGVLTH 155 (641)
T KOG0463|consen 139 VGNVDAGKSTLLGVLTH 155 (641)
T ss_pred EecccCCcceeEeeeee
Confidence 68889999999876653
No 411
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.68 E-value=0.00073 Score=42.28 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=15.8
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
.|++||||||+++.+.+.
T Consensus 5 ~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 5 SGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999763
No 412
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.67 E-value=0.0094 Score=36.62 Aligned_cols=87 Identities=13% Similarity=0.049 Sum_probs=48.0
Q ss_pred CCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhh
Q psy1873 2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKS 81 (157)
Q Consensus 2 G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s 81 (157)
+..|+||||+...+...--......+..-+. ... ....+.+.|+++.... .....+..+|.++++.+. +..+
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~----d~~-~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~-~~~s 78 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVLLVDL----DLQ-FGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQ-DLPS 78 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEEEC----CCC-CCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecC-ChHH
Confidence 3579999998776642211110001110000 000 0116789999876432 334567788988888765 4666
Q ss_pred HHHHHHHHHHHHHHh
Q psy1873 82 FEVVQILYDKLLDMT 96 (157)
Q Consensus 82 ~~~~~~~~~~i~~~~ 96 (157)
+..+.+++..+.+..
T Consensus 79 ~~~~~~~~~~l~~~~ 93 (106)
T cd03111 79 IRNAKRLLELLRVLD 93 (106)
T ss_pred HHHHHHHHHHHHHcC
Confidence 777777666665443
No 413
>KOG0464|consensus
Probab=96.64 E-value=0.00058 Score=51.50 Aligned_cols=104 Identities=16% Similarity=0.226 Sum_probs=71.3
Q ss_pred CCChhhhHhhhhc--------ccccccccC--------CccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCC
Q psy1873 5 SVGKSSLSIQFVD--------GQFVDSYDP--------TIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67 (157)
Q Consensus 5 ~~GKssli~~~~~--------~~~~~~~~~--------t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 67 (157)
.+||||.-.|++. +.+.....- ..|... ...+..+.+.+++.++||||+-+|+--....++--
T Consensus 47 dagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~leverclrvl 126 (753)
T KOG0464|consen 47 DAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLEVERCLRVL 126 (753)
T ss_pred cCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEEEHHHHHHHh
Confidence 5799999998763 111111110 111122 44556677889999999999999998888888888
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH 126 (157)
Q Consensus 68 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~ 126 (157)
|+++.|||.+..-.-+.+..|... .+.. +|-....||.|..
T Consensus 127 dgavav~dasagve~qtltvwrqa-----dk~~-------------ip~~~finkmdk~ 167 (753)
T KOG0464|consen 127 DGAVAVFDASAGVEAQTLTVWRQA-----DKFK-------------IPAHCFINKMDKL 167 (753)
T ss_pred cCeEEEEeccCCcccceeeeehhc-----cccC-------------Cchhhhhhhhhhh
Confidence 999999999877666666555322 1222 8888888998853
No 414
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.63 E-value=0.00092 Score=46.64 Aligned_cols=17 Identities=29% Similarity=0.278 Sum_probs=15.3
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|||||||++-+-.
T Consensus 37 ~GpSGSGKSTLLniig~ 53 (226)
T COG1136 37 VGPSGSGKSTLLNLLGG 53 (226)
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 69999999999999854
No 415
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.60 E-value=0.0085 Score=46.56 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=15.2
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
||+.||||||++.++..
T Consensus 262 vGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 262 MGPTGVGKTTTTAKLAA 278 (484)
T ss_pred ECCCCccHHHHHHHHHH
Confidence 69999999999998863
No 416
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.60 E-value=0.0013 Score=45.45 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=15.4
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+||+|||||||++.+-.
T Consensus 34 iGpSGSGKSTlLRclN~ 50 (240)
T COG1126 34 IGPSGSGKSTLLRCLNG 50 (240)
T ss_pred ECCCCCCHHHHHHHHHC
Confidence 69999999999999864
No 417
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.59 E-value=0.0012 Score=36.44 Aligned_cols=16 Identities=31% Similarity=0.283 Sum_probs=14.1
Q ss_pred CCCCCCChhhhHhhhh
Q psy1873 1 MGYRSVGKSSLSIQFV 16 (157)
Q Consensus 1 vG~~~~GKssli~~~~ 16 (157)
.|+.|+|||||+..+.
T Consensus 29 ~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 29 TGPNGSGKSTLLDAIQ 44 (62)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 4899999999998874
No 418
>KOG3859|consensus
Probab=96.58 E-value=0.0096 Score=42.88 Aligned_cols=52 Identities=23% Similarity=0.285 Sum_probs=35.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccce-----EEEEEEECCeEEEEEEEeCCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENT-----FVKTTRMNNQDYDLKLVDTAG 52 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~-----~~~~~~~~~~~~~~~i~D~~g 52 (157)
||..|.|||||+..|.+..|.....+..... ..+.+.-.+-...+.|.||.|
T Consensus 48 vGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 48 VGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred eccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 6999999999999999888865433322211 122333345567889999987
No 419
>PRK10867 signal recognition particle protein; Provisional
Probab=96.56 E-value=0.039 Score=42.48 Aligned_cols=87 Identities=13% Similarity=0.001 Sum_probs=47.5
Q ss_pred EEEEEEEeCCCCccCcCc-hh---hh--ccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc
Q psy1873 42 DYDLKLVDTAGQDEYSIF-PA---QY--SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP 115 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~~-~~---~~--~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p 115 (157)
.+.+.|.||+|....... .. .+ .-..+.+++|.|.... +++......+.+.. ..
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~-----------------~i 242 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL-----------------GL 242 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC-----------------CC
Confidence 367899999997544321 11 11 1245677899987643 33333333333222 12
Q ss_pred EEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEecc
Q psy1873 116 IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152 (157)
Q Consensus 116 ~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 152 (157)
.-+|.||.|.... ...+.......++|+..++.
T Consensus 243 ~giIlTKlD~~~r----gG~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 243 TGVILTKLDGDAR----GGAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred CEEEEeCccCccc----ccHHHHHHHHHCcCEEEEeC
Confidence 3567799995321 12256666777877665543
No 420
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.51 E-value=0.00093 Score=43.01 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=15.3
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|+|||||||++.++..
T Consensus 5 ~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 5 CGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999873
No 421
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.49 E-value=0.0013 Score=48.64 Aligned_cols=17 Identities=29% Similarity=0.387 Sum_probs=15.5
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
|||+|||||||++.+.+
T Consensus 35 lGPSGcGKSTlLr~IAG 51 (338)
T COG3839 35 LGPSGCGKSTLLRMIAG 51 (338)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 69999999999999865
No 422
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.44 E-value=0.032 Score=33.85 Aligned_cols=78 Identities=14% Similarity=0.138 Sum_probs=46.8
Q ss_pred CCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhH
Q psy1873 3 YRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSF 82 (157)
Q Consensus 3 ~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~ 82 (157)
..|+||||+...+...--. .-.+ ...+..+.. +.+.++|+++.... .....+..+|.++++.+. +..++
T Consensus 8 kgG~Gkst~~~~la~~~~~-~~~~------vl~~d~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~-~~~s~ 76 (104)
T cd02042 8 KGGVGKTTTAVNLAAALAR-RGKR------VLLIDLDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP-SPLDL 76 (104)
T ss_pred CCCcCHHHHHHHHHHHHHh-CCCc------EEEEeCCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC-CHHHH
Confidence 4699999998776431110 0001 111112222 67889999886532 233677788999988776 46677
Q ss_pred HHHHHHHHH
Q psy1873 83 EVVQILYDK 91 (157)
Q Consensus 83 ~~~~~~~~~ 91 (157)
+.+.+++..
T Consensus 77 ~~~~~~~~~ 85 (104)
T cd02042 77 DGLEKLLET 85 (104)
T ss_pred HHHHHHHHH
Confidence 777666553
No 423
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.41 E-value=0.015 Score=42.42 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=18.0
Q ss_pred CCCCCCChhhhHhhhhcccc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF 20 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~ 20 (157)
+|++|.|||+++++|.....
T Consensus 67 vG~snnGKT~Ii~rF~~~hp 86 (302)
T PF05621_consen 67 VGDSNNGKTMIIERFRRLHP 86 (302)
T ss_pred ecCCCCcHHHHHHHHHHHCC
Confidence 69999999999999998654
No 424
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.40 E-value=0.024 Score=46.47 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=15.2
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
||+.||||||.+.++..
T Consensus 191 VGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 191 VGPTGVGKTTTTAKLAA 207 (767)
T ss_pred ECCCCCcHHHHHHHHHh
Confidence 69999999999988863
No 425
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.37 E-value=0.0017 Score=46.24 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=15.5
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
|||.|||||||++.+.+
T Consensus 34 iGpNG~GKSTLLk~l~g 50 (258)
T COG1120 34 LGPNGSGKSTLLKCLAG 50 (258)
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 69999999999999865
No 426
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.37 E-value=0.002 Score=36.35 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=15.7
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
.|++|+||||+.+.+...
T Consensus 5 ~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 5 TGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999998753
No 427
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.36 E-value=0.0013 Score=44.36 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=16.8
Q ss_pred CCCCCCChhhhHhhhhccc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ 19 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~ 19 (157)
.||+|||||||+.+++...
T Consensus 10 sgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 10 SGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ECCCCCCHHHHHHHHHhhc
Confidence 3999999999999998765
No 428
>KOG2484|consensus
Probab=96.33 E-value=0.0017 Score=48.64 Aligned_cols=49 Identities=22% Similarity=0.436 Sum_probs=31.9
Q ss_pred CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQ 53 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~ 53 (157)
||.|||||||+||+|...+. .....|++... ...+..+ -.+.+.|.||.
T Consensus 258 iG~PNVGKSSvINsL~~~k~C~vg~~pGvT~s-mqeV~Ld---k~i~llDsPgi 307 (435)
T KOG2484|consen 258 IGYPNVGKSSVINSLKRRKACNVGNVPGVTRS-MQEVKLD---KKIRLLDSPGI 307 (435)
T ss_pred ecCCCCChhHHHHHHHHhccccCCCCccchhh-hhheecc---CCceeccCCce
Confidence 69999999999999987765 34444554321 1222222 23578999884
No 429
>PRK08118 topology modulation protein; Reviewed
Probab=96.32 E-value=0.0018 Score=43.24 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=15.3
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|||||||...+.+
T Consensus 7 ~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 7 IGSGGSGKSTLARQLGE 23 (167)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998864
No 430
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.32 E-value=0.002 Score=40.63 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=16.5
Q ss_pred CCCCCCChhhhHhhhhccc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ 19 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~ 19 (157)
+|++|+|||+++..+...-
T Consensus 8 ~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 8 VGPPGSGKTTLARALAREL 26 (148)
T ss_pred ECCCCCcHHHHHHHHHhcc
Confidence 5999999999999997643
No 431
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.32 E-value=0.0015 Score=41.78 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=15.9
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+.
T Consensus 17 ~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 17 VGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EESTTSSHHHHHHHHTTS
T ss_pred EccCCCccccceeeeccc
Confidence 599999999999998763
No 432
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.30 E-value=0.0019 Score=48.01 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=15.5
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+||+||||||+++.+.+
T Consensus 37 LGPSGcGKTTlLR~IAG 53 (352)
T COG3842 37 LGPSGCGKTTLLRMIAG 53 (352)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 69999999999999865
No 433
>KOG0780|consensus
Probab=96.30 E-value=0.004 Score=46.66 Aligned_cols=43 Identities=14% Similarity=0.271 Sum_probs=28.6
Q ss_pred CeEEEEEEEeCCCCccCcCchhhh------ccCCCEEEEEEECCChhhH
Q psy1873 40 NQDYDLKLVDTAGQDEYSIFPAQY------SMDIHGYVLVYSITSHKSF 82 (157)
Q Consensus 40 ~~~~~~~i~D~~g~~~~~~~~~~~------~~~~~~~ilv~d~~~~~s~ 82 (157)
...+.+.|.||+|......-.... .-..|-+|+|.|.+-...-
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaa 229 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAA 229 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhH
Confidence 346889999999976554322211 2345889999998866543
No 434
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.30 E-value=0.002 Score=43.73 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=15.9
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||++.+...
T Consensus 8 ~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 8 MGPSGSGKDSLLAALRQR 25 (186)
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 699999999999999653
No 435
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.29 E-value=0.0022 Score=40.45 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.9
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
.|++|+|||++++.+.+.
T Consensus 4 ~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 4 HGPPGTGKTTLARALAQY 21 (132)
T ss_dssp ESSTTSSHHHHHHHHHHH
T ss_pred ECcCCCCeeHHHHHHHhh
Confidence 499999999999999764
No 436
>PRK07261 topology modulation protein; Provisional
Probab=96.25 E-value=0.0021 Score=43.09 Aligned_cols=17 Identities=35% Similarity=0.700 Sum_probs=15.2
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|+|||||...+..
T Consensus 6 ~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 6 IGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 69999999999998864
No 437
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.24 E-value=0.0021 Score=39.57 Aligned_cols=16 Identities=25% Similarity=0.681 Sum_probs=14.6
Q ss_pred CCCCCCChhhhHhhhh
Q psy1873 1 MGYRSVGKSSLSIQFV 16 (157)
Q Consensus 1 vG~~~~GKssli~~~~ 16 (157)
+|++|+|||||++.+.
T Consensus 21 ~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 21 TGDSGIGKTELALELI 36 (107)
T ss_pred EcCCCCCHHHHHHHhh
Confidence 5999999999999976
No 438
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.24 E-value=0.0025 Score=42.37 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=15.7
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||.+.+.+.
T Consensus 1 ~G~sGsGKSTla~~la~~ 18 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQ 18 (163)
T ss_pred CCCCCCcHHHHHHHHHHH
Confidence 799999999999988653
No 439
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.24 E-value=0.0021 Score=43.38 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=16.4
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|+||+||||+..++.+.
T Consensus 6 lG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 6 LGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 699999999999999765
No 440
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.24 E-value=0.0022 Score=44.29 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||+++|...
T Consensus 19 ~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 19 SGPSGVGKDAVLARMRER 36 (206)
T ss_pred ECcCCCCHHHHHHHHHhc
Confidence 599999999999999754
No 441
>KOG0066|consensus
Probab=96.22 E-value=0.024 Score=43.64 Aligned_cols=54 Identities=17% Similarity=0.176 Sum_probs=33.8
Q ss_pred EEEEEEeCCC-CccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhc
Q psy1873 43 YDLKLVDTAG-QDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTG 97 (157)
Q Consensus 43 ~~~~i~D~~g-~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~ 97 (157)
..+.|-|.+| |.....+....+...|++|+= ..++--.++.+...-+.|.+...
T Consensus 698 HTikikdLSGGQKaRValaeLal~~PDvlILD-EPTNNLDIESIDALaEAIney~G 752 (807)
T KOG0066|consen 698 HTIKIKDLSGGQKARVALAELALGGPDVLILD-EPTNNLDIESIDALAEAINEYNG 752 (807)
T ss_pred ceEeeeecCCcchHHHHHHHHhcCCCCEEEec-CCCCCcchhhHHHHHHHHHhccC
Confidence 4678899876 555556788889999977764 33433345555554455555443
No 442
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=96.19 E-value=0.02 Score=44.17 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=15.3
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|..|+|||||++.+.+
T Consensus 36 LGENGAGKSTLm~iL~G 52 (501)
T COG3845 36 LGENGAGKSTLMKILFG 52 (501)
T ss_pred eccCCCCHHHHHHHHhC
Confidence 69999999999999864
No 443
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.16 E-value=0.0025 Score=42.79 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=15.7
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||++.+...
T Consensus 7 ~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 7 VGPSGAGKDTLLDYARAR 24 (179)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999998653
No 444
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.14 E-value=0.0026 Score=41.00 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=16.2
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+.
T Consensus 5 ~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 5 SGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred ECCCCCCHHHHHHHHHhc
Confidence 599999999999999864
No 445
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.14 E-value=0.003 Score=42.93 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=16.3
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||+++++..
T Consensus 10 ~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 10 SSVAGGGKSTIIQALLEE 27 (186)
T ss_pred ECCCCCCHHHHHHHHHhc
Confidence 599999999999999864
No 446
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.11 E-value=0.0028 Score=42.71 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=14.9
Q ss_pred CCCCCCChhhhHhhhh
Q psy1873 1 MGYRSVGKSSLSIQFV 16 (157)
Q Consensus 1 vG~~~~GKssli~~~~ 16 (157)
+|++||||||+++++.
T Consensus 9 ~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 9 VGGPGSGKGTQCEKIV 24 (188)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999987
No 447
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.07 E-value=0.0027 Score=42.60 Aligned_cols=18 Identities=17% Similarity=0.429 Sum_probs=15.9
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||+.+++..
T Consensus 12 vG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 12 AAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ECCCCChHHHHHHHHHHH
Confidence 599999999999999753
No 448
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.03 E-value=0.0034 Score=42.16 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=16.2
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||++.+.+.
T Consensus 7 ~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 7 SGPSGVGKSTLVKALLEE 24 (180)
T ss_pred ECCCCCCHHHHHHHHHcc
Confidence 599999999999999863
No 449
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.03 E-value=0.003 Score=43.17 Aligned_cols=17 Identities=18% Similarity=0.444 Sum_probs=15.3
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++|||||||++.+.+
T Consensus 5 ~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 5 AGGSGSGKTTVAEEIIE 21 (198)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999865
No 450
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.01 E-value=0.0034 Score=43.55 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=16.2
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+.
T Consensus 36 ~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 36 VGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EcCCCCCHHHHHHHHhCC
Confidence 699999999999999864
No 451
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.99 E-value=0.0033 Score=42.35 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=14.6
Q ss_pred CCCCCCChhhhHhhhh
Q psy1873 1 MGYRSVGKSSLSIQFV 16 (157)
Q Consensus 1 vG~~~~GKssli~~~~ 16 (157)
+|++|+|||||++.+.
T Consensus 27 ~G~nG~GKSTLl~~il 42 (176)
T cd03238 27 TGVSGSGKSTLVNEGL 42 (176)
T ss_pred ECCCCCCHHHHHHHHh
Confidence 5999999999999875
No 452
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.99 E-value=0.03 Score=37.58 Aligned_cols=44 Identities=18% Similarity=0.021 Sum_probs=26.7
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q psy1873 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM 127 (157)
Q Consensus 68 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~ 127 (157)
|+++++.|..++.+-.. ..+.++.. ..... .|+++|.||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~-l~~~~-------------kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVL-QAGGN-------------KKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHH-hccCC-------------CCEEEEEehhhcCC
Confidence 68999999988643211 11112211 11111 89999999999954
No 453
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.97 E-value=0.0026 Score=41.22 Aligned_cols=18 Identities=22% Similarity=0.525 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|+.|+|||||+..+++.
T Consensus 6 vG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 6 VGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999999763
No 454
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.97 E-value=0.0031 Score=39.58 Aligned_cols=17 Identities=18% Similarity=0.481 Sum_probs=15.2
Q ss_pred CCCCCChhhhHhhhhcc
Q psy1873 2 GYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 2 G~~~~GKssli~~~~~~ 18 (157)
|.+||||||+++.|...
T Consensus 5 G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 5 GIPGSGKTTIAKELAER 21 (129)
T ss_dssp ESTTSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 89999999999998754
No 455
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.96 E-value=0.0036 Score=42.86 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=15.1
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|||||||+|-+.+
T Consensus 37 lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 37 LGPSGCGKTTLLNLIAG 53 (259)
T ss_pred EcCCCccHHHHHHHHhc
Confidence 69999999999998754
No 456
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.95 E-value=0.0038 Score=43.08 Aligned_cols=18 Identities=28% Similarity=0.218 Sum_probs=16.2
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+.
T Consensus 33 ~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 33 VGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 699999999999999864
No 457
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.93 E-value=0.0035 Score=42.00 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=13.7
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++|+|||+|++++..
T Consensus 30 ~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 30 TGESGSGKTSLLRALLD 46 (185)
T ss_dssp -B-TTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998864
No 458
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.91 E-value=0.03 Score=40.35 Aligned_cols=84 Identities=19% Similarity=0.057 Sum_probs=45.2
Q ss_pred EEEEEEEeCCCCccCcCc----hhhhc--cCCCEEEEEEECC-ChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCC
Q psy1873 42 DYDLKLVDTAGQDEYSIF----PAQYS--MDIHGYVLVYSIT-SHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSV 114 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~~----~~~~~--~~~~~~ilv~d~~-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 114 (157)
.+.+.+.|++|....... +..++ ...+-++||.|.+ ..+.. ..++..+.. . .
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~---~~~~~~f~~-~-----------------~ 212 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM---IEIITNFKD-I-----------------H 212 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHH---HHHHHHhCC-C-----------------C
Confidence 467889999998654321 11122 2345678888875 33333 223333221 1 4
Q ss_pred cEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEe
Q psy1873 115 PIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEA 150 (157)
Q Consensus 115 p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 150 (157)
+--+|.||.|-.. . .-.+..++...++|+..+
T Consensus 213 ~~~~I~TKlDet~--~--~G~~l~~~~~~~~Pi~~i 244 (270)
T PRK06731 213 IDGIVFTKFDETA--S--SGELLKIPAVSSAPIVLM 244 (270)
T ss_pred CCEEEEEeecCCC--C--ccHHHHHHHHHCcCEEEE
Confidence 4568889999643 1 233455555666655443
No 459
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.91 E-value=0.0033 Score=39.75 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.2
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
.|++|+|||++++++...
T Consensus 10 ~G~~G~GKT~~~~~~~~~ 27 (131)
T PF13401_consen 10 SGPPGSGKTTLIKRLARQ 27 (131)
T ss_dssp EE-TTSSHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 489999999999999864
No 460
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.89 E-value=0.0042 Score=42.18 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+.
T Consensus 24 ~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 24 LGANGAGKSTLLLHLNGL 41 (190)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999998763
No 461
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.88 E-value=0.004 Score=42.79 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=16.2
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+.
T Consensus 32 ~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 32 TGKNGAGKTTLAKILAGL 49 (205)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999864
No 462
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.88 E-value=0.004 Score=43.13 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=16.2
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+.
T Consensus 35 ~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 35 VGHSGAGKSTFLKLILGI 52 (216)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999999864
No 463
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.88 E-value=0.0042 Score=43.64 Aligned_cols=18 Identities=33% Similarity=0.311 Sum_probs=16.2
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 32 IGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999999864
No 464
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.88 E-value=0.0039 Score=42.99 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=15.3
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|||||||++.+.+
T Consensus 12 ~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 12 GGGSGSGKTTVARKIYE 28 (207)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999999874
No 465
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.87 E-value=0.0041 Score=42.93 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=16.1
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+-
T Consensus 31 ~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 31 LGPNGAGKTTLMRILATL 48 (211)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999999863
No 466
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.87 E-value=0.0042 Score=43.68 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=16.1
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
||++|||||||.+.+.+-
T Consensus 39 vGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 39 VGESGSGKSTLARLLAGL 56 (252)
T ss_pred EcCCCCCHHHHHHHHhcc
Confidence 699999999999999763
No 467
>PRK08233 hypothetical protein; Provisional
Probab=95.86 E-value=0.0046 Score=41.44 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=15.1
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|.+|||||||.+++..
T Consensus 9 ~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 9 AAVSGGGKTTLTERLTH 25 (182)
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 39999999999999875
No 468
>KOG2485|consensus
Probab=95.86 E-value=0.01 Score=43.19 Aligned_cols=52 Identities=25% Similarity=0.383 Sum_probs=29.8
Q ss_pred CCCCCCChhhhHhhhhccccc------ccccCCccceEEEEEEECCeEEEEEEEeCCCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV------DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQ 53 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~ 53 (157)
||=||||||||+|.+...+.. ....+.+.......+.+.+.. .+.+.|++|.
T Consensus 149 vGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 149 VGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred EcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 689999999999988643321 122222222222223333333 2678999995
No 469
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.86 E-value=0.003 Score=40.54 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=15.2
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|+|||+|+..+..
T Consensus 5 ~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 5 VGPPGTGKTTLARELAA 21 (139)
T ss_dssp EESSSSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998874
No 470
>PF13173 AAA_14: AAA domain
Probab=95.86 E-value=0.0043 Score=39.39 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=16.3
Q ss_pred CCCCCCChhhhHhhhhccc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ 19 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~ 19 (157)
.|+.+||||||+.++...-
T Consensus 8 ~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 8 TGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998643
No 471
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.83 E-value=0.0045 Score=42.67 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=16.3
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 32 LGPNGAGKTTTIRMILGI 49 (210)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999999864
No 472
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.82 E-value=0.0046 Score=43.63 Aligned_cols=18 Identities=28% Similarity=0.206 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+.
T Consensus 34 ~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 34 IGPSGAGKSTLLRCINRL 51 (243)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999998763
No 473
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.81 E-value=0.0047 Score=43.15 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=15.1
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++|||||||++.+.+
T Consensus 5 ~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 5 AGSVAVGKSTTARVLQA 21 (220)
T ss_pred eCCCCCCHHHHHHHHHH
Confidence 49999999999998864
No 474
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.79 E-value=0.0047 Score=42.93 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=15.9
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+.
T Consensus 32 ~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 32 LGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999988764
No 475
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.78 E-value=0.0047 Score=42.94 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=16.2
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+.
T Consensus 36 ~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 36 VGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999999864
No 476
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.78 E-value=0.0047 Score=42.92 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=16.2
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|+.|+|||||++.+.+.
T Consensus 32 ~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 32 LGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999998864
No 477
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.77 E-value=0.0049 Score=42.55 Aligned_cols=18 Identities=28% Similarity=0.117 Sum_probs=16.3
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 32 IGPSGSGKSTLLRCINLL 49 (213)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999999864
No 478
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.76 E-value=0.0036 Score=40.89 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=15.5
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|+|||||+|+..++..
T Consensus 2 ~G~PgsGK~t~~~~la~ 18 (151)
T PF00406_consen 2 LGPPGSGKGTQAKRLAK 18 (151)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred cCCCCCChHHHHHHHHH
Confidence 69999999999999875
No 479
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.76 E-value=0.005 Score=42.71 Aligned_cols=18 Identities=17% Similarity=0.217 Sum_probs=16.2
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+-
T Consensus 19 ~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 19 LAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999998864
No 480
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.75 E-value=0.0052 Score=42.21 Aligned_cols=18 Identities=28% Similarity=0.106 Sum_probs=16.2
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+.
T Consensus 30 ~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 30 IGESGSGKSTLLNIIGLL 47 (206)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999864
No 481
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.74 E-value=0.0059 Score=37.57 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=15.0
Q ss_pred CCCCCChhhhHhhhhcc
Q psy1873 2 GYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 2 G~~~~GKssli~~~~~~ 18 (157)
|++|+|||+|++.|+..
T Consensus 5 G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 5 GPPGIGKSTLAKELAKD 21 (107)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999998643
No 482
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.74 E-value=0.005 Score=42.58 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+.
T Consensus 34 ~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 34 TGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999998764
No 483
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.73 E-value=0.023 Score=36.50 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=16.1
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
.|+.|+|||||++.+.+.
T Consensus 28 ~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 28 KGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 499999999999999865
No 484
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.73 E-value=0.0053 Score=42.44 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=16.1
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|+.|+|||||++.+.+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 32 LGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999998863
No 485
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.72 E-value=0.0051 Score=42.48 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=16.2
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+.
T Consensus 33 ~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 33 VGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999864
No 486
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.72 E-value=0.0051 Score=40.62 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.6
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++||||||+.+.+.+.
T Consensus 4 ~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 4 MGVAGSGKSTIASALAHR 21 (163)
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 599999999999988653
No 487
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.72 E-value=0.0053 Score=42.62 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=16.3
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+.
T Consensus 34 ~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 34 LGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999999864
No 488
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.71 E-value=0.0053 Score=42.65 Aligned_cols=18 Identities=28% Similarity=0.215 Sum_probs=16.3
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+.
T Consensus 37 ~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 37 VGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999999864
No 489
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.71 E-value=0.0053 Score=41.29 Aligned_cols=18 Identities=28% Similarity=0.241 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|+.|+|||||++.+.+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 32 LGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999999753
No 490
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.69 E-value=0.0053 Score=43.64 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
|||.|+|||||+..+++
T Consensus 36 iGPNGaGKSTLlK~iLG 52 (254)
T COG1121 36 IGPNGAGKSTLLKAILG 52 (254)
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 69999999999999986
No 491
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.69 E-value=0.0052 Score=41.35 Aligned_cols=17 Identities=24% Similarity=0.431 Sum_probs=15.3
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|+|||||||+..++..
T Consensus 5 ~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 5 LGGPGSGKGTQCAKIVE 21 (183)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999999864
No 492
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.69 E-value=0.0054 Score=39.84 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=33.8
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEE-EeCCC-CccCcCchhhhccCCCEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKL-VDTAG-QDEYSIFPAQYSMDIHGYVL 72 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i-~D~~g-~~~~~~~~~~~~~~~~~~il 72 (157)
+|++|+|||||++.+.+.. .++.|. +.+++.. .+.+ ...++ +.+.-.+....+.+++++|+
T Consensus 32 ~G~nGsGKStLl~~l~G~~-----~~~~G~-----i~~~~~~-~i~~~~~lS~G~~~rv~laral~~~p~illl 94 (144)
T cd03221 32 VGRNGAGKSTLLKLIAGEL-----EPDEGI-----VTWGSTV-KIGYFEQLSGGEKMRLALAKLLLENPNLLLL 94 (144)
T ss_pred ECCCCCCHHHHHHHHcCCC-----CCCceE-----EEECCeE-EEEEEccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5999999999999997642 223232 2223321 1111 12443 33333456666777775555
No 493
>PRK14530 adenylate kinase; Provisional
Probab=95.69 E-value=0.0051 Score=42.67 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=15.2
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|+|||||||+.+++.+
T Consensus 9 ~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 9 LGAPGAGKGTQSSNLAE 25 (215)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 69999999999999853
No 494
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.69 E-value=0.0051 Score=42.18 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||++.+.+.
T Consensus 11 ~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 11 SGPSGAGKSTLVKALLER 28 (205)
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 599999999999998764
No 495
>PRK03839 putative kinase; Provisional
Probab=95.69 E-value=0.0052 Score=41.34 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=15.2
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|.|||||||+..++.+
T Consensus 6 ~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 6 TGTPGVGKTTVSKLLAE 22 (180)
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998864
No 496
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.68 E-value=0.0056 Score=42.85 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=16.2
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+.
T Consensus 32 ~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 32 LGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999999864
No 497
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.67 E-value=0.0055 Score=42.98 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=16.2
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+.
T Consensus 37 ~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 37 IGRSGAGKSTLIRCINGL 54 (233)
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999999864
No 498
>PRK04195 replication factor C large subunit; Provisional
Probab=95.66 E-value=0.019 Score=44.87 Aligned_cols=18 Identities=33% Similarity=0.497 Sum_probs=15.9
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
.|++|+|||++++.+.+.
T Consensus 45 ~GppG~GKTtla~ala~e 62 (482)
T PRK04195 45 YGPPGVGKTSLAHALAND 62 (482)
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 399999999999999764
No 499
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.65 E-value=0.0055 Score=42.98 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=15.4
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
||++|+|||||++.+-+
T Consensus 36 IG~SGaGKSTLLR~lng 52 (258)
T COG3638 36 IGPSGAGKSTLLRSLNG 52 (258)
T ss_pred ECCCCCcHHHHHHHHhc
Confidence 69999999999998865
No 500
>PRK01889 GTPase RsgA; Reviewed
Probab=95.65 E-value=0.0059 Score=45.76 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=16.3
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|.+|+|||||++.+++.
T Consensus 201 vG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 201 LGSSGVGKSTLVNALLGE 218 (356)
T ss_pred ECCCCccHHHHHHHHHHh
Confidence 699999999999999864
Done!