Query psy1873
Match_columns 157
No_of_seqs 113 out of 1231
Neff 10.3
Searched_HMMs 29240
Date Fri Aug 16 18:30:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1873.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1873hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 4.2E-41 1.4E-45 232.2 15.5 143 1-157 19-162 (216)
2 3t5g_A GTP-binding protein RHE 100.0 9.3E-35 3.2E-39 194.8 16.5 144 1-157 12-155 (181)
3 3kkq_A RAS-related protein M-R 100.0 3.2E-34 1.1E-38 192.5 17.4 144 1-157 24-168 (183)
4 3c5c_A RAS-like protein 12; GD 100.0 2.5E-34 8.6E-39 194.2 15.5 145 1-157 27-172 (187)
5 3q3j_B RHO-related GTP-binding 100.0 1.7E-34 5.8E-39 198.9 14.4 142 1-157 33-188 (214)
6 2fu5_C RAS-related protein RAB 100.0 1.9E-34 6.3E-39 193.7 14.0 143 1-157 14-157 (183)
7 1c1y_A RAS-related protein RAP 100.0 4.3E-34 1.5E-38 188.9 15.5 144 1-157 9-153 (167)
8 2fn4_A P23, RAS-related protei 100.0 8.5E-34 2.9E-38 189.7 16.0 144 1-157 15-158 (181)
9 1z08_A RAS-related protein RAB 100.0 1.1E-33 3.8E-38 187.5 16.1 143 1-157 12-155 (170)
10 3cbq_A GTP-binding protein REM 100.0 9.4E-34 3.2E-38 192.7 15.9 144 1-157 29-174 (195)
11 2hup_A RAS-related protein RAB 100.0 4.7E-34 1.6E-38 194.9 14.4 143 1-157 35-179 (201)
12 3q72_A GTP-binding protein RAD 100.0 1.1E-33 3.9E-38 186.9 15.7 143 1-157 8-150 (166)
13 1u8z_A RAS-related protein RAL 100.0 9.3E-34 3.2E-38 187.2 15.2 144 1-157 10-153 (168)
14 2ew1_A RAS-related protein RAB 100.0 7E-34 2.4E-38 194.2 15.0 143 1-157 32-175 (201)
15 1r2q_A RAS-related protein RAB 100.0 2.1E-33 7E-38 186.0 16.5 143 1-157 12-155 (170)
16 2efe_B Small GTP-binding prote 100.0 4.4E-33 1.5E-37 186.4 18.2 143 1-157 18-161 (181)
17 3reg_A RHO-like small GTPase; 100.0 2.8E-33 9.6E-38 189.8 17.3 142 1-157 29-174 (194)
18 1kao_A RAP2A; GTP-binding prot 100.0 6.5E-34 2.2E-38 187.8 13.8 144 1-157 9-152 (167)
19 3oes_A GTPase rhebl1; small GT 100.0 5.6E-34 1.9E-38 194.3 13.7 144 1-157 30-173 (201)
20 2a5j_A RAS-related protein RAB 100.0 2.1E-33 7.1E-38 190.1 16.4 143 1-157 27-170 (191)
21 3tkl_A RAS-related protein RAB 100.0 4.1E-33 1.4E-37 188.8 17.8 143 1-157 22-165 (196)
22 2gf9_A RAS-related protein RAB 100.0 5.9E-33 2E-37 187.5 18.2 143 1-157 28-171 (189)
23 2bov_A RAla, RAS-related prote 100.0 2.6E-33 8.9E-38 191.2 16.5 144 1-157 20-163 (206)
24 3tw8_B RAS-related protein RAB 100.0 5.5E-33 1.9E-37 185.7 17.7 142 1-157 15-157 (181)
25 1ek0_A Protein (GTP-binding pr 100.0 3.7E-33 1.3E-37 184.8 16.7 143 1-157 9-155 (170)
26 3ihw_A Centg3; RAS, centaurin, 100.0 2.8E-33 9.5E-38 188.7 16.3 138 1-157 26-166 (184)
27 3q85_A GTP-binding protein REM 100.0 1.9E-33 6.4E-38 186.4 15.1 144 1-157 8-153 (169)
28 2atx_A Small GTP binding prote 100.0 4.2E-33 1.4E-37 188.8 17.2 142 1-157 24-179 (194)
29 2bcg_Y Protein YP2, GTP-bindin 100.0 6.7E-33 2.3E-37 189.5 18.2 143 1-157 14-157 (206)
30 1z0j_A RAB-22, RAS-related pro 100.0 7.8E-33 2.7E-37 183.3 17.6 143 1-157 12-155 (170)
31 2nzj_A GTP-binding protein REM 100.0 4.7E-33 1.6E-37 185.3 16.5 143 1-157 10-155 (175)
32 2a9k_A RAS-related protein RAL 100.0 3E-33 1E-37 187.9 15.5 144 1-157 24-167 (187)
33 1z0f_A RAB14, member RAS oncog 100.0 4.8E-33 1.6E-37 185.7 16.2 143 1-157 21-164 (179)
34 1z06_A RAS-related protein RAB 100.0 4.6E-33 1.6E-37 188.0 16.2 142 1-155 26-169 (189)
35 2hxs_A RAB-26, RAS-related pro 100.0 2.5E-33 8.4E-38 187.2 14.7 145 1-157 12-159 (178)
36 2q3h_A RAS homolog gene family 100.0 6.9E-33 2.4E-37 188.7 16.9 142 1-157 26-181 (201)
37 1zbd_A Rabphilin-3A; G protein 100.0 7.6E-33 2.6E-37 188.8 17.1 143 1-157 14-157 (203)
38 2iwr_A Centaurin gamma 1; ANK 100.0 5.3E-33 1.8E-37 185.8 15.9 140 1-157 13-155 (178)
39 2g3y_A GTP-binding protein GEM 100.0 4.3E-33 1.5E-37 191.6 15.8 143 1-157 43-189 (211)
40 4dsu_A GTPase KRAS, isoform 2B 100.0 1.1E-32 3.9E-37 185.5 17.5 143 1-157 10-152 (189)
41 1z2a_A RAS-related protein RAB 100.0 6.2E-33 2.1E-37 183.5 16.0 142 1-157 11-153 (168)
42 2g6b_A RAS-related protein RAB 100.0 1.1E-32 3.7E-37 184.4 17.3 143 1-157 16-160 (180)
43 2atv_A RERG, RAS-like estrogen 100.0 3.8E-33 1.3E-37 189.5 15.2 143 1-157 34-177 (196)
44 2bme_A RAB4A, RAS-related prot 100.0 3.6E-33 1.2E-37 187.7 14.7 143 1-157 16-159 (186)
45 1m7b_A RND3/RHOE small GTP-bin 100.0 2.9E-33 9.8E-38 188.4 13.6 142 1-157 13-169 (184)
46 2fg5_A RAB-22B, RAS-related pr 100.0 5.3E-33 1.8E-37 188.3 14.8 143 1-157 29-172 (192)
47 1g16_A RAS-related protein SEC 100.0 5.6E-33 1.9E-37 184.0 14.5 142 1-157 9-151 (170)
48 3cpj_B GTP-binding protein YPT 100.0 7.3E-33 2.5E-37 191.7 15.6 143 1-157 19-162 (223)
49 2y8e_A RAB-protein 6, GH09086P 100.0 9.5E-33 3.3E-37 184.3 15.4 143 1-157 20-163 (179)
50 2oil_A CATX-8, RAS-related pro 100.0 1.1E-32 3.9E-37 186.6 15.9 143 1-157 31-174 (193)
51 2j0v_A RAC-like GTP-binding pr 100.0 4E-33 1.4E-37 191.4 13.5 142 1-157 15-166 (212)
52 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.3E-32 4.4E-37 184.8 15.6 142 1-157 11-166 (186)
53 2o52_A RAS-related protein RAB 100.0 4.8E-33 1.7E-37 189.7 13.3 143 1-157 31-174 (200)
54 3dz8_A RAS-related protein RAB 100.0 1.1E-33 3.8E-38 191.4 9.8 143 1-157 29-172 (191)
55 1x3s_A RAS-related protein RAB 100.0 3.4E-32 1.2E-36 184.1 16.3 143 1-157 21-164 (195)
56 3con_A GTPase NRAS; structural 100.0 8.5E-32 2.9E-36 181.8 18.2 143 1-157 27-169 (190)
57 1gwn_A RHO-related GTP-binding 100.0 8.8E-33 3E-37 189.3 13.4 141 1-156 34-189 (205)
58 1wms_A RAB-9, RAB9, RAS-relate 100.0 5.5E-32 1.9E-36 180.5 16.9 146 1-157 13-160 (177)
59 2erx_A GTP-binding protein DI- 100.0 1.8E-32 6.2E-37 181.7 14.5 145 1-157 9-153 (172)
60 2cjw_A GTP-binding protein GEM 100.0 4.4E-32 1.5E-36 184.0 16.6 143 1-157 12-158 (192)
61 2j1l_A RHO-related GTP-binding 100.0 1.2E-32 4.2E-37 189.5 14.0 142 1-157 40-195 (214)
62 2il1_A RAB12; G-protein, GDP, 100.0 8.7E-33 3E-37 187.3 13.0 143 1-157 32-176 (192)
63 2ce2_X GTPase HRAS; signaling 100.0 6.6E-32 2.3E-36 177.8 16.9 143 1-157 9-151 (166)
64 2gco_A H9, RHO-related GTP-bin 100.0 4.2E-32 1.4E-36 185.1 16.3 142 1-157 31-186 (201)
65 2p5s_A RAS and EF-hand domain 100.0 1E-32 3.4E-37 187.8 13.1 143 1-157 34-183 (199)
66 3bc1_A RAS-related protein RAB 100.0 3.9E-32 1.3E-36 183.5 15.8 144 1-157 17-171 (195)
67 3cph_A RAS-related protein SEC 100.0 8.4E-32 2.9E-36 184.6 17.3 142 1-157 26-168 (213)
68 3bwd_D RAC-like GTP-binding pr 100.0 2.7E-33 9.2E-38 187.6 9.1 142 1-157 14-167 (182)
69 4gzl_A RAS-related C3 botulinu 100.0 2.7E-32 9.1E-37 186.6 13.6 142 1-157 36-191 (204)
70 2fv8_A H6, RHO-related GTP-bin 100.0 1E-31 3.4E-36 184.0 16.2 142 1-157 31-186 (207)
71 2yc2_C IFT27, small RAB-relate 100.0 1.4E-32 4.6E-37 187.8 11.6 146 1-157 26-178 (208)
72 3clv_A RAB5 protein, putative; 100.0 2.3E-31 7.9E-36 180.9 17.0 140 1-157 13-190 (208)
73 1vg8_A RAS-related protein RAB 100.0 3E-31 1E-35 181.2 17.0 146 1-157 14-161 (207)
74 2f7s_A C25KG, RAS-related prot 100.0 1.5E-32 5E-37 189.2 10.3 144 1-157 31-185 (217)
75 2gf0_A GTP-binding protein DI- 100.0 1.7E-31 5.7E-36 181.3 14.7 144 1-157 14-157 (199)
76 1ky3_A GTP-binding protein YPT 100.0 1.4E-31 4.7E-36 179.1 14.0 147 1-157 14-164 (182)
77 4djt_A GTP-binding nuclear pro 100.0 1.7E-31 5.6E-36 184.0 14.0 143 1-157 17-161 (218)
78 3l0i_B RAS-related protein RAB 100.0 2.4E-33 8.4E-38 190.9 4.4 143 1-157 39-182 (199)
79 3gj0_A GTP-binding nuclear pro 100.0 2.5E-31 8.4E-36 183.7 12.3 140 1-157 21-161 (221)
80 1f6b_A SAR1; gtpases, N-termin 100.0 7.1E-31 2.4E-35 178.8 13.5 138 1-157 31-185 (198)
81 4bas_A ADP-ribosylation factor 100.0 5.6E-31 1.9E-35 178.7 12.2 148 1-157 23-175 (199)
82 1m2o_B GTP-binding protein SAR 100.0 3.2E-30 1.1E-34 174.5 15.2 138 1-157 29-178 (190)
83 3t1o_A Gliding protein MGLA; G 100.0 3.6E-31 1.2E-35 179.2 9.3 139 1-157 20-178 (198)
84 1r8s_A ADP-ribosylation factor 100.0 2.9E-31 1E-35 175.0 7.9 138 1-157 6-148 (164)
85 2wkq_A NPH1-1, RAS-related C3 100.0 5.8E-30 2E-34 186.1 14.9 142 1-157 161-316 (332)
86 2f9l_A RAB11B, member RAS onco 100.0 4.3E-29 1.5E-33 169.9 16.9 143 1-157 11-154 (199)
87 3th5_A RAS-related C3 botulinu 99.9 1.9E-32 6.5E-37 187.1 0.0 142 1-157 36-191 (204)
88 1zd9_A ADP-ribosylation factor 100.0 1E-30 3.5E-35 176.5 8.3 139 1-157 28-171 (188)
89 1upt_A ARL1, ADP-ribosylation 100.0 6.8E-30 2.3E-34 169.4 11.6 140 1-157 13-155 (171)
90 2h57_A ADP-ribosylation factor 100.0 2.7E-29 9.2E-34 169.6 14.6 141 1-157 27-173 (190)
91 2b6h_A ADP-ribosylation factor 100.0 2.6E-30 9E-35 175.1 9.2 138 1-157 35-177 (192)
92 2zej_A Dardarin, leucine-rich 100.0 3.3E-31 1.1E-35 178.4 4.7 141 1-156 8-162 (184)
93 1ksh_A ARF-like protein 2; sma 100.0 4.3E-29 1.5E-33 167.9 14.3 138 1-157 24-166 (186)
94 1zj6_A ADP-ribosylation factor 100.0 2E-29 6.9E-34 169.8 12.5 138 1-157 22-164 (187)
95 1oix_A RAS-related protein RAB 100.0 1E-28 3.5E-33 167.2 15.8 143 1-157 35-178 (191)
96 2h17_A ADP-ribosylation factor 100.0 2.7E-29 9.3E-34 168.5 12.3 138 1-157 27-169 (181)
97 2x77_A ADP-ribosylation factor 100.0 5.8E-30 2E-34 172.7 8.6 138 1-157 28-170 (189)
98 1fzq_A ADP-ribosylation factor 100.0 6.6E-30 2.3E-34 171.6 8.3 138 1-157 22-164 (181)
99 3llu_A RAS-related GTP-binding 100.0 8.3E-29 2.8E-33 168.1 10.1 138 1-157 26-183 (196)
100 1moz_A ARL1, ADP-ribosylation 100.0 2.1E-29 7.2E-34 168.9 7.0 138 1-157 24-166 (183)
101 3r7w_B Gtpase2, GTP-binding pr 100.0 3.4E-29 1.2E-33 180.6 7.8 138 1-155 5-159 (331)
102 3c5h_A Glucocorticoid receptor 100.0 2.5E-29 8.5E-34 177.4 4.3 138 5-157 38-241 (255)
103 2fh5_B SR-beta, signal recogni 100.0 1E-28 3.5E-33 169.6 6.5 116 1-129 13-131 (214)
104 3r7w_A Gtpase1, GTP-binding pr 100.0 1.2E-27 4E-32 172.9 12.2 141 1-155 9-166 (307)
105 2wji_A Ferrous iron transport 99.9 2.2E-27 7.4E-32 157.1 10.3 134 1-157 9-151 (165)
106 3o47_A ADP-ribosylation factor 99.9 3.8E-28 1.3E-32 177.0 6.2 138 1-157 171-313 (329)
107 3lvq_E ARF-GAP with SH3 domain 99.9 2.3E-27 7.9E-32 181.2 9.8 138 1-157 328-470 (497)
108 1nrj_B SR-beta, signal recogni 99.9 6.1E-28 2.1E-32 166.2 3.5 139 1-157 18-170 (218)
109 3dpu_A RAB family protein; roc 99.9 2.5E-26 8.5E-31 176.9 9.3 139 1-157 47-194 (535)
110 2lkc_A Translation initiation 99.9 2.6E-25 8.9E-30 148.2 12.8 131 1-157 14-157 (178)
111 2qu8_A Putative nucleolar GTP- 99.9 3.3E-25 1.1E-29 153.7 12.0 140 1-157 35-191 (228)
112 2wjg_A FEOB, ferrous iron tran 99.9 7.4E-26 2.5E-30 152.2 8.3 134 1-157 13-155 (188)
113 2dyk_A GTP-binding protein; GT 99.9 1.2E-25 4E-30 147.5 7.9 132 1-157 7-148 (161)
114 2gj8_A MNME, tRNA modification 99.9 4.3E-26 1.5E-30 151.9 5.6 133 1-157 10-152 (172)
115 2cxx_A Probable GTP-binding pr 99.9 2.6E-26 8.9E-31 154.5 4.5 136 1-157 7-170 (190)
116 3a1s_A Iron(II) transport prot 99.9 7.1E-25 2.4E-29 154.8 10.6 134 1-157 11-153 (258)
117 3iev_A GTP-binding protein ERA 99.9 5.5E-24 1.9E-28 153.8 13.5 139 1-157 16-168 (308)
118 3iby_A Ferrous iron transport 99.9 7.6E-25 2.6E-29 154.5 7.6 134 1-157 7-153 (256)
119 3b1v_A Ferrous iron uptake tra 99.9 5.8E-25 2E-29 156.2 6.9 134 1-157 9-150 (272)
120 1svi_A GTP-binding protein YSX 99.9 4.9E-25 1.7E-29 149.0 6.1 136 1-157 29-181 (195)
121 3k53_A Ferrous iron transport 99.9 1.2E-23 4.2E-28 149.4 9.3 135 1-157 9-152 (271)
122 3i8s_A Ferrous iron transport 99.9 6.6E-24 2.2E-28 151.1 6.7 134 1-157 9-155 (274)
123 2hjg_A GTP-binding protein ENG 99.9 1E-23 3.4E-28 158.9 7.1 137 1-157 181-335 (436)
124 3gee_A MNME, tRNA modification 99.9 1E-22 3.4E-27 154.4 10.9 136 1-157 239-384 (476)
125 4dcu_A GTP-binding protein ENG 99.9 4.1E-23 1.4E-27 156.3 8.4 137 1-157 201-355 (456)
126 3pqc_A Probable GTP-binding pr 99.9 2.5E-23 8.5E-28 140.3 6.3 133 1-157 29-180 (195)
127 1wf3_A GTP-binding protein; GT 99.9 2.2E-22 7.5E-27 144.9 10.1 135 1-157 13-159 (301)
128 1u0l_A Probable GTPase ENGC; p 99.9 1.6E-22 5.5E-27 145.7 8.1 124 10-157 32-159 (301)
129 2e87_A Hypothetical protein PH 99.9 3.2E-21 1.1E-25 141.8 14.8 138 1-157 173-322 (357)
130 3qq5_A Small GTP-binding prote 99.9 1E-22 3.4E-27 152.3 6.7 134 1-157 40-182 (423)
131 2ged_A SR-beta, signal recogni 99.9 1.6E-22 5.6E-27 136.4 6.9 113 1-131 54-174 (193)
132 1lnz_A SPO0B-associated GTP-bi 99.9 2.3E-22 7.9E-27 146.8 7.9 140 1-157 164-316 (342)
133 1mky_A Probable GTP-binding pr 99.9 9.2E-22 3.1E-26 148.3 10.5 133 1-157 7-152 (439)
134 1xzp_A Probable tRNA modificat 99.9 7.6E-22 2.6E-26 149.8 9.6 132 1-157 249-391 (482)
135 4dhe_A Probable GTP-binding pr 99.9 1.2E-22 4.2E-27 140.0 4.8 139 1-157 35-197 (223)
136 2qag_A Septin-2, protein NEDD5 99.8 2.3E-22 7.8E-27 148.1 2.9 140 1-157 43-220 (361)
137 1ega_A Protein (GTP-binding pr 99.8 2.3E-20 8E-25 134.4 12.0 136 1-157 14-161 (301)
138 3p26_A Elongation factor 1 alp 99.8 3.2E-21 1.1E-25 146.8 6.7 141 1-157 39-224 (483)
139 1mky_A Probable GTP-binding pr 99.8 1.3E-20 4.3E-25 142.1 9.7 137 1-157 186-341 (439)
140 1cip_A Protein (guanine nucleo 99.8 1.1E-20 3.6E-25 138.5 8.4 116 26-157 179-330 (353)
141 3geh_A MNME, tRNA modification 99.8 4.9E-21 1.7E-25 144.7 5.7 131 1-157 230-370 (462)
142 2hjg_A GTP-binding protein ENG 99.8 1.6E-21 5.4E-26 146.9 2.0 132 1-157 9-151 (436)
143 1zun_B Sulfate adenylate trans 99.8 9.9E-20 3.4E-24 137.0 11.3 140 1-157 30-210 (434)
144 2xtz_A Guanine nucleotide-bind 99.8 2.3E-21 7.8E-26 142.1 2.1 104 41-157 181-331 (354)
145 3sjy_A Translation initiation 99.8 2E-19 7E-24 134.2 12.5 141 1-157 14-178 (403)
146 1jny_A EF-1-alpha, elongation 99.8 1.4E-20 4.9E-25 141.6 6.2 141 1-157 12-199 (435)
147 2qtf_A Protein HFLX, GTP-bindi 99.8 1.6E-19 5.3E-24 133.0 11.4 140 1-157 185-340 (364)
148 3ohm_A Guanine nucleotide-bind 99.8 1.3E-20 4.4E-25 136.5 5.3 118 24-157 151-304 (327)
149 1s0u_A EIF-2-gamma, translatio 99.8 3E-19 1E-23 133.5 11.6 137 1-157 14-184 (408)
150 1azs_C GS-alpha; complex (lyas 99.8 1.2E-19 4.1E-24 134.5 9.0 79 34-127 210-298 (402)
151 1zcb_A G alpha I/13; GTP-bindi 99.8 9.7E-20 3.3E-24 133.8 8.3 109 34-157 194-339 (362)
152 2xtp_A GTPase IMAP family memb 99.8 2.6E-19 8.9E-24 126.3 10.1 139 1-157 28-194 (260)
153 3cb4_D GTP-binding protein LEP 99.8 1.9E-19 6.4E-24 139.6 10.2 137 1-157 10-168 (599)
154 3j2k_7 ERF3, eukaryotic polype 99.8 3.3E-19 1.1E-23 134.3 11.1 138 1-157 23-211 (439)
155 3izq_1 HBS1P, elongation facto 99.8 1.7E-19 5.7E-24 140.5 9.2 141 1-157 173-358 (611)
156 3lxx_A GTPase IMAP family memb 99.8 3.9E-19 1.3E-23 124.0 10.1 137 1-154 35-192 (239)
157 2ywe_A GTP-binding protein LEP 99.8 4.4E-19 1.5E-23 137.5 10.6 137 1-157 12-170 (600)
158 1wb1_A Translation elongation 99.8 2.3E-19 7.8E-24 136.5 8.5 133 1-157 25-175 (482)
159 2c78_A Elongation factor TU-A; 99.8 7.2E-20 2.5E-24 136.7 5.6 139 1-157 17-180 (405)
160 3izy_P Translation initiation 99.8 1.7E-21 6E-26 149.1 -3.5 138 1-157 10-154 (537)
161 1f60_A Elongation factor EEF1A 99.8 3.7E-19 1.3E-23 134.7 9.2 137 1-157 13-198 (458)
162 1kk1_A EIF2gamma; initiation o 99.8 6.6E-19 2.2E-23 131.7 10.0 137 1-157 16-186 (410)
163 1r5b_A Eukaryotic peptide chai 99.8 1.2E-19 4E-24 137.7 5.8 101 43-157 121-238 (467)
164 3t5d_A Septin-7; GTP-binding p 99.8 1.4E-19 4.8E-24 128.7 5.9 139 1-157 14-190 (274)
165 4fid_A G protein alpha subunit 99.8 1.2E-19 3.9E-24 132.0 4.7 87 24-126 145-241 (340)
166 1d2e_A Elongation factor TU (E 99.8 3.1E-19 1.1E-23 133.0 6.9 139 1-157 9-171 (397)
167 3def_A T7I23.11 protein; chlor 99.8 3.2E-18 1.1E-22 121.0 11.5 115 1-130 42-168 (262)
168 1g7s_A Translation initiation 99.8 1.3E-18 4.5E-23 135.0 9.7 106 1-127 11-136 (594)
169 1zo1_I IF2, translation initia 99.8 5.5E-20 1.9E-24 139.8 0.7 134 1-157 10-153 (501)
170 2elf_A Protein translation elo 99.8 6.3E-19 2.1E-23 130.1 6.1 128 1-157 27-166 (370)
171 4dcu_A GTP-binding protein ENG 99.8 1.3E-19 4.3E-24 137.2 2.4 133 1-157 29-171 (456)
172 3tr5_A RF-3, peptide chain rel 99.8 2E-18 6.9E-23 132.4 8.1 106 1-127 19-148 (528)
173 3lxw_A GTPase IMAP family memb 99.7 1.9E-17 6.6E-22 116.0 11.0 138 1-154 27-186 (247)
174 2aka_B Dynamin-1; fusion prote 99.7 7E-19 2.4E-23 126.2 2.8 98 43-157 125-239 (299)
175 1pui_A ENGB, probable GTP-bind 99.7 6.3E-18 2.1E-22 115.3 7.2 134 1-157 32-185 (210)
176 3avx_A Elongation factor TS, e 99.7 4.4E-18 1.5E-22 138.5 7.0 138 1-156 302-463 (1289)
177 1udx_A The GTP-binding protein 99.7 7.1E-17 2.4E-21 120.5 12.0 141 1-157 163-311 (416)
178 2qag_C Septin-7; cell cycle, c 99.7 1.2E-17 4E-22 124.8 7.6 139 1-157 37-213 (418)
179 3t34_A Dynamin-related protein 99.7 4.8E-18 1.7E-22 125.1 4.8 98 43-156 136-246 (360)
180 2qnr_A Septin-2, protein NEDD5 99.7 1.6E-18 5.3E-23 124.8 2.0 138 1-155 24-199 (301)
181 1h65_A Chloroplast outer envel 99.7 5.9E-17 2E-21 114.9 9.5 114 1-130 45-171 (270)
182 2dy1_A Elongation factor G; tr 99.7 5.4E-17 1.9E-21 127.7 9.6 108 1-126 15-139 (665)
183 1wxq_A GTP-binding protein; st 99.7 6.3E-17 2.2E-21 120.3 9.2 79 1-79 6-114 (397)
184 3mca_A HBS1, elongation factor 99.7 1.6E-18 5.5E-23 134.6 0.7 99 42-157 254-369 (592)
185 2h5e_A Peptide chain release f 99.7 1.2E-16 3.9E-21 122.8 9.0 137 1-157 19-181 (529)
186 1jal_A YCHF protein; nucleotid 99.7 1.2E-15 4.1E-20 111.8 11.3 153 1-154 8-240 (363)
187 1jwy_B Dynamin A GTPase domain 99.7 2.2E-17 7.5E-22 119.3 2.1 96 43-155 131-240 (315)
188 2j69_A Bacterial dynamin-like 99.6 1.7E-16 5.7E-21 125.4 6.8 68 44-128 175-245 (695)
189 1dar_A EF-G, elongation factor 99.6 2.1E-15 7.3E-20 119.1 8.9 106 1-127 18-143 (691)
190 2yv5_A YJEQ protein; hydrolase 99.6 3.9E-14 1.3E-18 101.9 12.0 88 53-157 66-155 (302)
191 2hf9_A Probable hydrogenase ni 99.6 5.1E-18 1.7E-22 117.1 -8.9 44 114-157 165-210 (226)
192 2x2e_A Dynamin-1; nitration, h 99.6 1.9E-16 6.5E-21 116.3 -1.2 98 43-157 130-244 (353)
193 2wsm_A Hydrogenase expression/ 99.6 3.3E-15 1.1E-19 102.6 5.0 89 43-157 109-200 (221)
194 2dby_A GTP-binding protein; GD 99.6 4.2E-14 1.4E-18 104.1 11.1 154 1-155 7-246 (368)
195 1n0u_A EF-2, elongation factor 99.6 7E-15 2.4E-19 118.3 7.6 108 1-126 25-163 (842)
196 2qpt_A EH domain-containing pr 99.5 1.6E-15 5.4E-20 117.0 3.0 111 1-130 71-235 (550)
197 2xex_A Elongation factor G; GT 99.5 2.6E-14 9.1E-19 112.9 9.6 129 1-152 16-168 (693)
198 3p32_A Probable GTPase RV1496/ 99.5 5.3E-15 1.8E-19 108.7 1.7 90 42-157 171-270 (355)
199 2rdo_7 EF-G, elongation factor 99.5 5.6E-13 1.9E-17 105.6 11.7 109 1-128 16-149 (704)
200 2www_A Methylmalonic aciduria 99.4 2.1E-14 7E-19 105.3 -0.3 89 43-157 167-265 (349)
201 1yrb_A ATP(GTP)binding protein 99.4 6.6E-13 2.3E-17 93.3 7.3 72 43-128 109-186 (262)
202 2p67_A LAO/AO transport system 99.3 9E-14 3.1E-18 101.6 0.5 91 42-157 148-247 (341)
203 4a9a_A Ribosome-interacting GT 99.3 6.7E-12 2.3E-16 92.5 10.1 127 1-144 78-221 (376)
204 3l82_B F-box only protein 4; T 99.3 2.7E-12 9.3E-17 86.8 4.4 96 50-157 109-209 (227)
205 2qm8_A GTPase/ATPase; G protei 99.2 7.5E-12 2.6E-16 91.3 5.7 91 42-157 147-247 (337)
206 3zvr_A Dynamin-1; hydrolase, D 99.2 1.6E-11 5.5E-16 97.4 6.6 97 44-157 151-264 (772)
207 2ohf_A Protein OLA1, GTP-bindi 99.2 8.3E-12 2.8E-16 92.4 4.4 81 1-81 28-131 (396)
208 3l2o_B F-box only protein 4; s 99.1 2.8E-11 9.6E-16 85.6 3.4 93 50-157 194-294 (312)
209 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 2.3E-09 7.7E-14 79.5 12.7 78 1-78 26-127 (392)
210 3vqt_A RF-3, peptide chain rel 99.1 7.8E-10 2.7E-14 85.4 9.3 123 1-145 37-182 (548)
211 3h2y_A GTPase family protein; 98.9 1.4E-09 4.6E-14 80.3 4.5 85 52-157 55-146 (368)
212 4fn5_A EF-G 1, elongation fact 98.8 5E-08 1.7E-12 77.6 10.8 109 1-127 19-151 (709)
213 3j25_A Tetracycline resistance 98.7 1.9E-09 6.5E-14 84.7 1.7 108 1-126 8-132 (638)
214 3ec1_A YQEH GTPase; atnos1, at 98.7 3.7E-09 1.3E-13 78.0 2.2 86 51-157 56-148 (369)
215 3ec1_A YQEH GTPase; atnos1, at 98.6 1.1E-08 3.6E-13 75.5 1.9 130 1-154 168-314 (369)
216 3h2y_A GTPase family protein; 98.5 8.7E-09 3E-13 76.0 -1.0 128 1-152 166-311 (368)
217 2j37_W Signal recognition part 98.5 1.6E-07 5.4E-12 71.8 5.6 81 42-147 183-270 (504)
218 1puj_A YLQF, conserved hypothe 98.5 1.3E-07 4.4E-12 67.3 4.6 87 47-157 3-92 (282)
219 2qag_B Septin-6, protein NEDD5 98.5 2.4E-07 8.2E-12 69.3 5.8 20 1-20 48-67 (427)
220 3sop_A Neuronal-specific septi 98.2 7.3E-07 2.5E-11 63.0 3.0 19 1-19 8-26 (270)
221 1t9h_A YLOQ, probable GTPase E 98.2 3.2E-06 1.1E-10 60.8 6.2 86 55-157 75-163 (307)
222 1tq4_A IIGP1, interferon-induc 98.1 1.4E-05 4.7E-10 59.7 8.3 18 1-18 75-92 (413)
223 3cnl_A YLQF, putative uncharac 98.0 1E-06 3.4E-11 62.0 0.8 51 1-55 105-156 (262)
224 3dm5_A SRP54, signal recogniti 98.0 1.7E-05 5.9E-10 59.6 7.3 86 43-152 183-274 (443)
225 1puj_A YLQF, conserved hypothe 98.0 2.8E-06 9.5E-11 60.4 2.5 49 1-54 126-176 (282)
226 3cnl_A YLQF, putative uncharac 98.0 3.6E-06 1.2E-10 59.2 2.7 83 50-157 4-87 (262)
227 1f5n_A Interferon-induced guan 97.8 7E-06 2.4E-10 63.9 2.5 55 1-55 44-103 (592)
228 2rcn_A Probable GTPase ENGC; Y 97.8 5.9E-05 2E-09 55.3 7.1 77 63-157 127-205 (358)
229 2v3c_C SRP54, signal recogniti 97.8 3E-05 1E-09 58.3 5.6 84 42-150 180-271 (432)
230 3kl4_A SRP54, signal recogniti 97.7 0.00012 4E-09 55.1 7.1 87 42-152 179-273 (433)
231 1j8m_F SRP54, signal recogniti 97.6 0.00019 6.6E-09 51.3 6.5 85 42-151 180-273 (297)
232 3szr_A Interferon-induced GTP- 97.5 0.00014 4.8E-09 57.0 5.1 19 1-19 51-69 (608)
233 1bif_A 6-phosphofructo-2-kinas 97.5 2.2E-06 7.5E-11 65.1 -5.0 92 1-94 45-147 (469)
234 3e70_C DPA, signal recognition 97.4 0.00071 2.4E-08 49.0 7.7 85 43-151 212-302 (328)
235 3q5d_A Atlastin-1; G protein, 96.9 0.00082 2.8E-08 50.7 4.3 18 1-18 73-90 (447)
236 1kgd_A CASK, peripheral plasma 96.9 0.00029 9.8E-09 46.4 1.3 18 1-18 11-28 (180)
237 1lvg_A Guanylate kinase, GMP k 96.8 0.00037 1.3E-08 46.7 1.3 17 1-17 10-26 (198)
238 1ye8_A Protein THEP1, hypothet 96.7 0.00042 1.4E-08 45.7 1.3 18 1-18 6-23 (178)
239 4gp7_A Metallophosphoesterase; 96.7 0.00054 1.8E-08 44.8 1.4 16 1-16 15-30 (171)
240 3a00_A Guanylate kinase, GMP k 96.7 0.00049 1.7E-08 45.5 1.1 18 1-18 7-24 (186)
241 3tr0_A Guanylate kinase, GMP k 96.6 0.00056 1.9E-08 45.7 1.2 18 1-18 13-30 (205)
242 1znw_A Guanylate kinase, GMP k 96.6 0.00056 1.9E-08 46.0 1.2 18 1-18 26-43 (207)
243 1s96_A Guanylate kinase, GMP k 96.6 0.00064 2.2E-08 46.4 1.2 18 1-18 22-39 (219)
244 1z6g_A Guanylate kinase; struc 96.5 0.00067 2.3E-08 46.1 1.2 18 1-18 29-46 (218)
245 3ney_A 55 kDa erythrocyte memb 96.5 0.00076 2.6E-08 45.3 1.3 18 1-18 25-42 (197)
246 1zp6_A Hypothetical protein AT 96.5 0.00064 2.2E-08 44.9 0.9 18 1-18 15-32 (191)
247 2rcn_A Probable GTPase ENGC; Y 96.4 0.00087 3E-08 49.1 1.4 19 1-19 221-239 (358)
248 2xxa_A Signal recognition part 96.4 0.014 4.8E-07 43.9 7.8 84 42-150 183-273 (433)
249 3tif_A Uncharacterized ABC tra 96.4 0.00097 3.3E-08 46.0 1.4 17 1-17 37-53 (235)
250 3tau_A Guanylate kinase, GMP k 96.4 0.00095 3.2E-08 45.0 1.2 18 1-18 14-31 (208)
251 3c8u_A Fructokinase; YP_612366 96.4 0.00093 3.2E-08 45.0 1.1 17 1-17 28-44 (208)
252 1u0l_A Probable GTPase ENGC; p 96.3 0.0011 3.7E-08 47.4 1.3 19 1-19 175-193 (301)
253 1htw_A HI0065; nucleotide-bind 96.3 0.0012 4E-08 42.8 1.2 19 1-19 39-57 (158)
254 2yv5_A YJEQ protein; hydrolase 96.3 0.0012 4.1E-08 47.2 1.3 16 1-16 171-186 (302)
255 1ex7_A Guanylate kinase; subst 96.3 0.0012 4.2E-08 43.9 1.3 18 1-18 7-24 (186)
256 2pcj_A ABC transporter, lipopr 96.2 0.0011 3.8E-08 45.3 0.9 18 1-18 36-53 (224)
257 2qor_A Guanylate kinase; phosp 96.2 0.0013 4.5E-08 44.0 1.2 18 1-18 18-35 (204)
258 2onk_A Molybdate/tungstate ABC 96.2 0.0014 4.9E-08 45.3 1.4 18 1-18 30-47 (240)
259 1b0u_A Histidine permease; ABC 96.2 0.0014 4.9E-08 45.9 1.4 18 1-18 38-55 (262)
260 3ec2_A DNA replication protein 96.2 0.0017 5.8E-08 42.5 1.7 18 1-18 44-61 (180)
261 2bdt_A BH3686; alpha-beta prot 96.2 0.0014 4.7E-08 43.3 1.2 17 1-17 8-24 (189)
262 3gfo_A Cobalt import ATP-bindi 96.2 0.0015 5.1E-08 46.1 1.4 17 1-17 40-56 (275)
263 2j41_A Guanylate kinase; GMP, 96.2 0.0014 4.9E-08 43.7 1.2 18 1-18 12-29 (207)
264 1sgw_A Putative ABC transporte 96.2 0.0016 5.6E-08 44.2 1.4 18 1-18 41-58 (214)
265 2cbz_A Multidrug resistance-as 96.2 0.0016 5.4E-08 45.0 1.4 18 1-18 37-54 (237)
266 1g6h_A High-affinity branched- 96.1 0.0016 5.5E-08 45.5 1.4 18 1-18 39-56 (257)
267 4g1u_C Hemin import ATP-bindin 96.1 0.0016 5.6E-08 45.7 1.4 18 1-18 43-60 (266)
268 1kag_A SKI, shikimate kinase I 96.1 0.0017 5.7E-08 42.1 1.2 17 1-17 10-26 (173)
269 2olj_A Amino acid ABC transpor 96.1 0.0018 6.1E-08 45.4 1.4 18 1-18 56-73 (263)
270 2ff7_A Alpha-hemolysin translo 96.1 0.0018 6.3E-08 44.9 1.4 18 1-18 41-58 (247)
271 3b85_A Phosphate starvation-in 96.1 0.0016 5.6E-08 44.0 1.1 18 1-18 28-45 (208)
272 1t9h_A YLOQ, probable GTPase E 96.1 0.00047 1.6E-08 49.5 -1.7 18 1-18 179-196 (307)
273 2pze_A Cystic fibrosis transme 96.1 0.002 6.7E-08 44.2 1.4 18 1-18 40-57 (229)
274 1mv5_A LMRA, multidrug resista 96.1 0.0019 6.7E-08 44.6 1.4 18 1-18 34-51 (243)
275 1ji0_A ABC transporter; ATP bi 96.0 0.0019 6.6E-08 44.6 1.4 18 1-18 38-55 (240)
276 1vpl_A ABC transporter, ATP-bi 96.0 0.002 6.8E-08 45.0 1.4 18 1-18 47-64 (256)
277 2qi9_C Vitamin B12 import ATP- 96.0 0.002 6.9E-08 44.8 1.4 18 1-18 32-49 (249)
278 4eun_A Thermoresistant glucoki 96.0 0.0019 6.4E-08 43.1 1.2 17 1-17 35-51 (200)
279 1np6_A Molybdopterin-guanine d 96.0 0.0019 6.7E-08 42.4 1.2 18 1-18 12-29 (174)
280 3kb2_A SPBC2 prophage-derived 96.0 0.0019 6.5E-08 41.7 1.2 17 1-17 7-23 (173)
281 2i3b_A HCR-ntpase, human cance 96.0 0.0019 6.6E-08 43.0 1.2 18 1-18 7-24 (189)
282 2d2e_A SUFC protein; ABC-ATPas 96.0 0.0021 7E-08 44.7 1.4 18 1-18 35-52 (250)
283 2ehv_A Hypothetical protein PH 96.0 0.0021 7.1E-08 44.1 1.4 16 1-16 36-51 (251)
284 1ly1_A Polynucleotide kinase; 96.0 0.0021 7.1E-08 41.8 1.3 17 1-17 8-24 (181)
285 2bbw_A Adenylate kinase 4, AK4 96.0 0.0021 7.3E-08 44.3 1.4 16 1-16 33-48 (246)
286 2ihy_A ABC transporter, ATP-bi 96.0 0.0022 7.5E-08 45.4 1.4 18 1-18 53-70 (279)
287 3lnc_A Guanylate kinase, GMP k 96.0 0.0015 5.2E-08 44.6 0.6 16 1-16 33-48 (231)
288 2zu0_C Probable ATP-dependent 96.0 0.0023 7.8E-08 45.0 1.4 18 1-18 52-69 (267)
289 2ghi_A Transport protein; mult 95.9 0.0022 7.7E-08 44.8 1.4 18 1-18 52-69 (260)
290 2ixe_A Antigen peptide transpo 95.9 0.0023 7.8E-08 45.1 1.4 18 1-18 51-68 (271)
291 3lw7_A Adenylate kinase relate 95.9 0.0023 7.9E-08 41.2 1.3 15 1-15 7-21 (179)
292 2nq2_C Hypothetical ABC transp 95.9 0.0024 8.1E-08 44.5 1.4 18 1-18 37-54 (253)
293 2yz2_A Putative ABC transporte 95.9 0.0025 8.5E-08 44.7 1.4 18 1-18 39-56 (266)
294 2eyu_A Twitching motility prot 95.9 0.0024 8.2E-08 44.7 1.2 17 1-17 31-47 (261)
295 4a74_A DNA repair and recombin 95.8 0.002 6.7E-08 43.7 0.7 18 1-18 31-48 (231)
296 3asz_A Uridine kinase; cytidin 95.8 0.002 6.7E-08 43.3 0.7 17 1-17 12-28 (211)
297 1knq_A Gluconate kinase; ALFA/ 95.8 0.0026 8.8E-08 41.4 1.2 17 1-17 14-30 (175)
298 3uie_A Adenylyl-sulfate kinase 95.8 0.0028 9.5E-08 42.3 1.2 17 1-17 31-47 (200)
299 2pjz_A Hypothetical protein ST 95.8 0.0031 1E-07 44.3 1.4 18 1-18 36-53 (263)
300 2v9p_A Replication protein E1; 95.8 0.0027 9.3E-08 45.5 1.2 17 1-17 132-148 (305)
301 3fvq_A Fe(3+) IONS import ATP- 95.7 0.0025 8.5E-08 46.7 0.8 18 1-18 36-53 (359)
302 1z47_A CYSA, putative ABC-tran 95.7 0.0031 1.1E-07 46.1 1.4 18 1-18 47-64 (355)
303 3rlf_A Maltose/maltodextrin im 95.7 0.0032 1.1E-07 46.5 1.4 18 1-18 35-52 (381)
304 3t61_A Gluconokinase; PSI-biol 95.7 0.003 1E-07 42.1 1.2 17 1-17 24-40 (202)
305 1qhx_A CPT, protein (chloramph 95.7 0.0032 1.1E-07 40.9 1.3 17 1-17 9-25 (178)
306 3aez_A Pantothenate kinase; tr 95.7 0.0031 1.1E-07 45.3 1.2 17 1-17 96-112 (312)
307 2it1_A 362AA long hypothetical 95.7 0.0033 1.1E-07 46.1 1.4 18 1-18 35-52 (362)
308 2kjq_A DNAA-related protein; s 95.7 0.0026 8.9E-08 40.6 0.7 18 1-18 42-59 (149)
309 3tui_C Methionine import ATP-b 95.7 0.0034 1.2E-07 46.1 1.4 17 1-17 60-76 (366)
310 2yyz_A Sugar ABC transporter, 95.7 0.0033 1.1E-07 46.1 1.4 18 1-18 35-52 (359)
311 3vaa_A Shikimate kinase, SK; s 95.7 0.0033 1.1E-07 41.9 1.2 17 1-17 31-47 (199)
312 1g29_1 MALK, maltose transport 95.6 0.0036 1.2E-07 46.1 1.4 18 1-18 35-52 (372)
313 1v43_A Sugar-binding transport 95.6 0.0038 1.3E-07 46.0 1.4 18 1-18 43-60 (372)
314 1cke_A CK, MSSA, protein (cyti 95.5 0.0041 1.4E-07 42.1 1.3 17 1-17 11-27 (227)
315 2bbs_A Cystic fibrosis transme 95.4 0.0037 1.3E-07 44.5 0.9 18 1-18 70-87 (290)
316 1xjc_A MOBB protein homolog; s 95.4 0.0046 1.6E-07 40.4 1.3 17 1-17 10-26 (169)
317 1kht_A Adenylate kinase; phosp 95.4 0.0054 1.8E-07 40.2 1.6 17 1-17 9-25 (192)
318 2jaq_A Deoxyguanosine kinase; 95.4 0.0045 1.6E-07 41.0 1.2 17 1-17 6-22 (205)
319 1rj9_A FTSY, signal recognitio 95.4 0.0044 1.5E-07 44.4 1.2 16 1-16 108-123 (304)
320 1ixz_A ATP-dependent metallopr 95.4 0.0046 1.6E-07 42.7 1.3 18 1-18 55-72 (254)
321 1jjv_A Dephospho-COA kinase; P 95.4 0.0048 1.7E-07 41.2 1.3 17 1-17 8-24 (206)
322 2x8a_A Nuclear valosin-contain 95.4 0.0044 1.5E-07 43.6 1.1 17 1-17 50-66 (274)
323 3cm0_A Adenylate kinase; ATP-b 95.4 0.0048 1.7E-07 40.4 1.2 17 1-17 10-26 (186)
324 3d31_A Sulfate/molybdate ABC t 95.4 0.0031 1.1E-07 46.0 0.3 18 1-18 32-49 (348)
325 1nks_A Adenylate kinase; therm 95.4 0.0045 1.6E-07 40.6 1.1 17 1-17 7-23 (194)
326 1jbk_A CLPB protein; beta barr 95.4 0.0059 2E-07 39.7 1.6 18 1-18 49-66 (195)
327 3b9q_A Chloroplast SRP recepto 95.4 0.0048 1.7E-07 44.1 1.2 17 1-17 106-122 (302)
328 2jeo_A Uridine-cytidine kinase 95.3 0.0049 1.7E-07 42.5 1.2 17 1-17 31-47 (245)
329 2f1r_A Molybdopterin-guanine d 95.3 0.0017 5.9E-08 42.5 -1.1 17 1-17 8-24 (171)
330 1lw7_A Transcriptional regulat 95.3 0.0042 1.4E-07 45.5 0.8 18 1-18 176-193 (365)
331 2rhm_A Putative kinase; P-loop 95.3 0.0042 1.4E-07 40.9 0.7 17 1-17 11-27 (193)
332 3nh6_A ATP-binding cassette SU 95.3 0.0034 1.2E-07 45.0 0.2 17 1-17 86-102 (306)
333 1gvn_B Zeta; postsegregational 95.3 0.005 1.7E-07 43.6 1.1 17 1-17 39-55 (287)
334 2w0m_A SSO2452; RECA, SSPF, un 95.3 0.0057 1.9E-07 41.3 1.3 17 1-17 29-45 (235)
335 3trf_A Shikimate kinase, SK; a 95.2 0.0059 2E-07 40.0 1.3 17 1-17 11-27 (185)
336 3gd7_A Fusion complex of cysti 95.2 0.0047 1.6E-07 45.8 0.8 17 1-17 53-69 (390)
337 1in4_A RUVB, holliday junction 95.2 0.0056 1.9E-07 44.3 1.2 18 1-18 57-74 (334)
338 3jvv_A Twitching mobility prot 95.2 0.0058 2E-07 44.8 1.2 17 1-17 129-145 (356)
339 3tqc_A Pantothenate kinase; bi 95.1 0.0062 2.1E-07 44.0 1.3 16 1-16 98-113 (321)
340 2vp4_A Deoxynucleoside kinase; 95.1 0.0064 2.2E-07 41.5 1.3 18 1-18 26-43 (230)
341 2z0h_A DTMP kinase, thymidylat 95.1 0.0075 2.6E-07 39.7 1.6 17 1-17 6-22 (197)
342 3sr0_A Adenylate kinase; phosp 95.1 0.0065 2.2E-07 41.0 1.2 17 1-17 6-22 (206)
343 1oxx_K GLCV, glucose, ABC tran 95.1 0.0031 1.1E-07 46.1 -0.4 18 1-18 37-54 (353)
344 3fb4_A Adenylate kinase; psych 95.1 0.0066 2.3E-07 40.8 1.2 17 1-17 6-22 (216)
345 2plr_A DTMP kinase, probable t 95.0 0.0083 2.8E-07 40.0 1.6 17 1-17 10-26 (213)
346 2if2_A Dephospho-COA kinase; a 95.0 0.0056 1.9E-07 40.8 0.7 17 1-17 7-23 (204)
347 1via_A Shikimate kinase; struc 95.0 0.0075 2.6E-07 39.2 1.3 17 1-17 10-26 (175)
348 1iy2_A ATP-dependent metallopr 95.0 0.0071 2.4E-07 42.4 1.3 18 1-18 79-96 (278)
349 3dl0_A Adenylate kinase; phosp 95.0 0.0071 2.4E-07 40.7 1.2 17 1-17 6-22 (216)
350 1tev_A UMP-CMP kinase; ploop, 95.0 0.0075 2.6E-07 39.6 1.3 17 1-17 9-25 (196)
351 2qt1_A Nicotinamide riboside k 95.0 0.0061 2.1E-07 40.7 0.8 18 1-18 27-44 (207)
352 2ewv_A Twitching motility prot 95.0 0.0069 2.4E-07 44.6 1.2 17 1-17 142-158 (372)
353 3kta_A Chromosome segregation 95.0 0.0063 2.2E-07 39.7 0.9 17 1-17 32-48 (182)
354 1sq5_A Pantothenate kinase; P- 94.9 0.0061 2.1E-07 43.6 0.7 17 1-17 86-102 (308)
355 1n0w_A DNA repair protein RAD5 94.9 0.0083 2.8E-07 40.9 1.4 18 1-18 30-47 (243)
356 2pt7_A CAG-ALFA; ATPase, prote 94.9 0.0069 2.4E-07 43.8 1.0 18 1-18 177-194 (330)
357 2ze6_A Isopentenyl transferase 94.9 0.0079 2.7E-07 41.8 1.3 17 1-17 7-23 (253)
358 2cvh_A DNA repair and recombin 94.9 0.0083 2.8E-07 40.2 1.3 17 1-17 26-42 (220)
359 3iij_A Coilin-interacting nucl 94.9 0.0084 2.9E-07 39.1 1.3 17 1-17 17-33 (180)
360 3umf_A Adenylate kinase; rossm 94.9 0.008 2.7E-07 40.9 1.2 17 1-17 35-51 (217)
361 1rz3_A Hypothetical protein rb 94.9 0.0065 2.2E-07 40.5 0.7 17 1-17 28-44 (201)
362 2yvu_A Probable adenylyl-sulfa 94.9 0.0084 2.9E-07 39.3 1.3 17 1-17 19-35 (186)
363 3qf7_A RAD50; ABC-ATPase, ATPa 94.9 0.057 2E-06 39.5 5.8 16 1-16 29-44 (365)
364 2og2_A Putative signal recogni 94.8 0.0082 2.8E-07 44.0 1.2 17 1-17 163-179 (359)
365 2gza_A Type IV secretion syste 94.8 0.0068 2.3E-07 44.4 0.8 18 1-18 181-198 (361)
366 4ido_A Atlastin-1; GTPase, GTP 94.8 0.025 8.5E-07 42.7 3.7 56 1-56 73-153 (457)
367 2v54_A DTMP kinase, thymidylat 94.8 0.011 3.8E-07 39.2 1.6 18 1-18 10-27 (204)
368 3bos_A Putative DNA replicatio 94.8 0.011 3.6E-07 40.1 1.6 17 1-17 58-74 (242)
369 2cdn_A Adenylate kinase; phosp 94.7 0.0096 3.3E-07 39.6 1.3 17 1-17 26-42 (201)
370 4e22_A Cytidylate kinase; P-lo 94.7 0.0098 3.3E-07 41.2 1.3 16 1-16 33-48 (252)
371 4dzz_A Plasmid partitioning pr 94.7 0.087 3E-06 34.7 6.0 88 42-148 75-162 (206)
372 2pbr_A DTMP kinase, thymidylat 94.7 0.011 3.8E-07 38.8 1.6 17 1-17 6-22 (195)
373 2p65_A Hypothetical protein PF 94.7 0.0075 2.6E-07 39.1 0.7 18 1-18 49-66 (187)
374 1aky_A Adenylate kinase; ATP:A 94.7 0.0096 3.3E-07 40.2 1.3 17 1-17 10-26 (220)
375 1y63_A LMAJ004144AAA protein; 94.7 0.0096 3.3E-07 39.1 1.2 18 1-18 16-33 (184)
376 1gtv_A TMK, thymidylate kinase 94.7 0.0028 9.7E-08 42.5 -1.5 17 1-17 6-22 (214)
377 2yhs_A FTSY, cell division pro 94.6 0.0098 3.4E-07 45.4 1.3 17 1-17 299-315 (503)
378 1lv7_A FTSH; alpha/beta domain 94.6 0.01 3.4E-07 41.1 1.2 17 1-17 51-67 (257)
379 2c95_A Adenylate kinase 1; tra 94.6 0.0082 2.8E-07 39.5 0.7 17 1-17 15-31 (196)
380 1f2t_A RAD50 ABC-ATPase; DNA d 94.6 0.011 3.9E-07 37.6 1.4 16 1-16 29-44 (149)
381 1odf_A YGR205W, hypothetical 3 94.6 0.01 3.5E-07 42.2 1.3 16 1-16 37-52 (290)
382 1zd8_A GTP:AMP phosphotransfer 94.6 0.0083 2.8E-07 40.8 0.7 16 1-16 13-28 (227)
383 2pez_A Bifunctional 3'-phospho 94.6 0.011 3.7E-07 38.6 1.3 17 1-17 11-27 (179)
384 1zak_A Adenylate kinase; ATP:A 94.6 0.0082 2.8E-07 40.6 0.7 17 1-17 11-27 (222)
385 3tlx_A Adenylate kinase 2; str 94.6 0.011 3.6E-07 40.8 1.3 17 1-17 35-51 (243)
386 1nij_A Hypothetical protein YJ 94.6 0.0071 2.4E-07 43.5 0.4 18 1-18 10-27 (318)
387 2xb4_A Adenylate kinase; ATP-b 94.6 0.011 3.7E-07 40.2 1.2 17 1-17 6-22 (223)
388 1qhl_A Protein (cell division 94.6 0.0059 2E-07 41.9 -0.1 18 1-18 33-50 (227)
389 1cr0_A DNA primase/helicase; R 94.6 0.0084 2.9E-07 42.4 0.7 18 1-18 41-58 (296)
390 1p9r_A General secretion pathw 94.6 0.01 3.5E-07 44.4 1.2 18 1-18 173-190 (418)
391 2bwj_A Adenylate kinase 5; pho 94.5 0.0089 3E-07 39.4 0.7 17 1-17 18-34 (199)
392 2p5t_B PEZT; postsegregational 94.5 0.0071 2.4E-07 41.9 0.2 17 1-17 38-54 (253)
393 3end_A Light-independent proto 94.5 0.59 2E-05 33.0 10.3 86 42-149 156-242 (307)
394 2w58_A DNAI, primosome compone 94.5 0.013 4.6E-07 38.8 1.6 18 1-18 60-77 (202)
395 1njg_A DNA polymerase III subu 94.5 0.013 4.6E-07 39.3 1.6 17 1-17 51-67 (250)
396 3a4m_A L-seryl-tRNA(SEC) kinas 94.5 0.012 4.2E-07 40.9 1.3 17 1-17 10-26 (260)
397 1e6c_A Shikimate kinase; phosp 94.4 0.015 5.1E-07 37.4 1.7 17 1-17 8-24 (173)
398 2iyv_A Shikimate kinase, SK; t 94.4 0.013 4.3E-07 38.3 1.3 17 1-17 8-24 (184)
399 2chg_A Replication factor C sm 94.4 0.014 4.9E-07 38.7 1.6 18 1-18 44-61 (226)
400 2wwf_A Thymidilate kinase, put 94.4 0.011 3.9E-07 39.4 1.1 17 1-17 16-32 (212)
401 2npi_A Protein CLP1; CLP1-PCF1 94.4 0.0096 3.3E-07 45.1 0.7 18 1-18 144-161 (460)
402 4eaq_A DTMP kinase, thymidylat 94.4 0.015 5.2E-07 39.7 1.6 17 1-17 32-48 (229)
403 1e4v_A Adenylate kinase; trans 94.3 0.01 3.5E-07 39.9 0.7 17 1-17 6-22 (214)
404 3ozx_A RNAse L inhibitor; ATP 94.3 0.013 4.6E-07 45.2 1.4 18 1-18 31-48 (538)
405 2oap_1 GSPE-2, type II secreti 94.3 0.011 3.9E-07 45.3 1.0 18 1-18 266-283 (511)
406 2pt5_A Shikimate kinase, SK; a 94.3 0.016 5.3E-07 37.2 1.6 17 1-17 6-22 (168)
407 1ukz_A Uridylate kinase; trans 94.3 0.015 5.3E-07 38.5 1.6 17 1-17 21-37 (203)
408 2vli_A Antibiotic resistance p 94.3 0.012 4.1E-07 38.3 1.0 17 1-17 11-27 (183)
409 3euj_A Chromosome partition pr 94.3 0.014 4.6E-07 44.5 1.3 17 1-17 35-51 (483)
410 2obl_A ESCN; ATPase, hydrolase 94.3 0.011 3.8E-07 43.1 0.7 18 1-18 77-94 (347)
411 1yqt_A RNAse L inhibitor; ATP- 94.2 0.014 4.9E-07 45.0 1.4 18 1-18 53-70 (538)
412 1tue_A Replication protein E1; 94.2 0.011 3.9E-07 39.9 0.7 16 2-17 65-80 (212)
413 1m7g_A Adenylylsulfate kinase; 94.2 0.014 4.8E-07 39.1 1.2 17 1-17 31-47 (211)
414 1nn5_A Similar to deoxythymidy 94.2 0.013 4.5E-07 39.1 1.1 17 1-17 15-31 (215)
415 1qf9_A UMP/CMP kinase, protein 94.2 0.014 4.7E-07 38.2 1.1 17 1-17 12-28 (194)
416 3h4m_A Proteasome-activating n 94.1 0.017 5.7E-07 40.5 1.5 17 1-17 57-73 (285)
417 3j16_B RLI1P; ribosome recycli 94.1 0.016 5.5E-07 45.4 1.4 18 1-18 109-126 (608)
418 1svm_A Large T antigen; AAA+ f 94.1 0.015 5.3E-07 42.9 1.2 17 1-17 175-191 (377)
419 1ltq_A Polynucleotide kinase; 94.1 0.016 5.5E-07 41.0 1.3 17 1-17 8-24 (301)
420 1l8q_A Chromosomal replication 94.0 0.018 6.2E-07 41.2 1.5 17 1-17 43-59 (324)
421 3b9p_A CG5977-PA, isoform A; A 94.0 0.018 6.1E-07 40.6 1.4 17 1-17 60-76 (297)
422 3t15_A Ribulose bisphosphate c 94.0 0.015 5.2E-07 41.2 1.1 16 2-17 43-58 (293)
423 2r62_A Cell division protease 94.0 0.019 6.6E-07 39.8 1.6 17 1-17 50-66 (268)
424 2qz4_A Paraplegin; AAA+, SPG7, 94.0 0.02 6.7E-07 39.5 1.6 17 1-17 45-61 (262)
425 3b5x_A Lipid A export ATP-bind 93.9 0.018 6.2E-07 44.8 1.5 17 1-17 375-391 (582)
426 1ak2_A Adenylate kinase isoenz 93.9 0.018 6.1E-07 39.3 1.3 17 1-17 22-38 (233)
427 4a82_A Cystic fibrosis transme 93.9 0.016 5.4E-07 45.2 1.0 17 1-17 373-389 (578)
428 2dpy_A FLII, flagellum-specifi 93.9 0.014 4.8E-07 43.9 0.7 18 1-18 163-180 (438)
429 2yl4_A ATP-binding cassette SU 93.9 0.016 5.6E-07 45.2 1.1 17 1-17 376-392 (595)
430 3nwj_A ATSK2; P loop, shikimat 93.9 0.018 6.1E-07 40.0 1.2 17 1-17 54-70 (250)
431 2dr3_A UPF0273 protein PH0284; 93.9 0.015 5.2E-07 39.6 0.9 17 1-17 29-45 (247)
432 3be4_A Adenylate kinase; malar 93.9 0.015 5E-07 39.3 0.7 17 1-17 11-27 (217)
433 1nlf_A Regulatory protein REPA 93.9 0.015 5.2E-07 40.8 0.8 17 1-17 36-52 (279)
434 1zuh_A Shikimate kinase; alpha 93.8 0.024 8.1E-07 36.4 1.7 17 1-17 13-29 (168)
435 3b60_A Lipid A export ATP-bind 93.8 0.016 5.5E-07 45.1 0.9 17 1-17 375-391 (582)
436 3ea0_A ATPase, para family; al 93.8 0.66 2.3E-05 31.3 9.1 86 42-149 118-203 (245)
437 3bk7_A ABC transporter ATP-bin 93.8 0.02 6.9E-07 44.9 1.4 18 1-18 123-140 (607)
438 3qf4_B Uncharacterized ABC tra 93.8 0.019 6.4E-07 44.9 1.2 17 1-17 387-403 (598)
439 1sxj_E Activator 1 40 kDa subu 93.8 0.021 7.3E-07 41.2 1.5 17 1-17 42-58 (354)
440 1vht_A Dephospho-COA kinase; s 93.7 0.025 8.7E-07 38.0 1.7 17 1-17 10-26 (218)
441 3ozx_A RNAse L inhibitor; ATP 93.7 0.022 7.4E-07 44.0 1.4 18 1-18 300-317 (538)
442 1pzn_A RAD51, DNA repair and r 93.7 0.017 5.9E-07 42.1 0.8 18 1-18 137-154 (349)
443 3r20_A Cytidylate kinase; stru 93.7 0.022 7.7E-07 39.1 1.3 16 1-16 15-30 (233)
444 1sxj_C Activator 1 40 kDa subu 93.6 0.024 8.1E-07 40.9 1.5 18 1-18 52-69 (340)
445 3cf0_A Transitional endoplasmi 93.5 0.025 8.7E-07 40.2 1.5 17 1-17 55-71 (301)
446 1uf9_A TT1252 protein; P-loop, 93.5 0.018 6.3E-07 38.0 0.7 18 1-18 14-31 (203)
447 3zvl_A Bifunctional polynucleo 93.5 0.026 8.9E-07 42.1 1.5 17 1-17 264-280 (416)
448 1ofh_A ATP-dependent HSL prote 93.4 0.028 9.6E-07 39.6 1.6 17 1-17 56-72 (310)
449 3n70_A Transport activator; si 93.4 0.03 1E-06 35.2 1.6 18 1-18 30-47 (145)
450 2v1u_A Cell division control p 93.4 0.027 9.2E-07 40.9 1.5 18 1-18 50-67 (387)
451 1fnn_A CDC6P, cell division co 93.4 0.028 9.7E-07 40.9 1.6 18 1-18 50-67 (389)
452 2qby_A CDC6 homolog 1, cell di 93.4 0.023 7.8E-07 41.2 1.1 18 1-18 51-68 (386)
453 3qf4_A ABC transporter, ATP-bi 93.4 0.022 7.6E-07 44.4 1.1 17 1-17 375-391 (587)
454 1d2n_A N-ethylmaleimide-sensit 93.4 0.029 9.9E-07 39.1 1.6 18 1-18 70-87 (272)
455 1p5z_B DCK, deoxycytidine kina 93.3 0.029 1E-06 38.9 1.6 16 2-17 31-46 (263)
456 2qen_A Walker-type ATPase; unk 93.3 0.03 1E-06 40.0 1.6 18 1-18 37-54 (350)
457 1sxj_D Activator 1 41 kDa subu 93.2 0.03 1E-06 40.2 1.6 18 1-18 64-81 (353)
458 4hlc_A DTMP kinase, thymidylat 93.2 0.033 1.1E-06 37.5 1.6 16 2-17 9-24 (205)
459 3bk7_A ABC transporter ATP-bin 93.2 0.028 9.7E-07 44.1 1.4 18 1-18 388-405 (607)
460 3qks_A DNA double-strand break 93.2 0.03 1E-06 37.5 1.4 16 1-16 29-44 (203)
461 1yqt_A RNAse L inhibitor; ATP- 93.2 0.029 9.9E-07 43.3 1.4 18 1-18 318-335 (538)
462 4b4t_K 26S protease regulatory 93.2 0.031 1.1E-06 41.9 1.5 16 2-17 213-228 (428)
463 4fcw_A Chaperone protein CLPB; 93.1 0.028 9.6E-07 39.8 1.2 18 1-18 53-70 (311)
464 3gmt_A Adenylate kinase; ssgci 93.1 0.03 1E-06 38.4 1.2 17 1-17 14-30 (230)
465 1vma_A Cell division protein F 93.1 0.03 1E-06 40.1 1.3 85 43-151 187-283 (306)
466 3syl_A Protein CBBX; photosynt 93.1 0.028 9.5E-07 39.8 1.1 17 1-17 73-89 (309)
467 4b4t_M 26S protease regulatory 93.0 0.034 1.2E-06 41.8 1.6 16 2-17 222-237 (434)
468 2px0_A Flagellar biosynthesis 93.0 0.024 8.1E-07 40.4 0.7 86 42-151 182-273 (296)
469 1xwi_A SKD1 protein; VPS4B, AA 93.0 0.034 1.2E-06 40.0 1.4 17 1-17 51-67 (322)
470 3ake_A Cytidylate kinase; CMP 92.9 0.038 1.3E-06 36.6 1.6 17 1-17 8-24 (208)
471 1tf7_A KAIC; homohexamer, hexa 92.9 0.026 8.8E-07 43.4 0.8 15 1-15 45-59 (525)
472 3co5_A Putative two-component 92.9 0.027 9.4E-07 35.4 0.7 18 1-18 33-50 (143)
473 3lda_A DNA repair protein RAD5 92.8 0.028 9.4E-07 41.8 0.8 16 1-16 184-199 (400)
474 1uj2_A Uridine-cytidine kinase 92.8 0.041 1.4E-06 38.0 1.7 17 1-17 28-44 (252)
475 3j16_B RLI1P; ribosome recycli 92.8 0.035 1.2E-06 43.6 1.4 18 1-18 384-401 (608)
476 1w5s_A Origin recognition comp 92.8 0.042 1.4E-06 40.4 1.7 18 1-18 58-75 (412)
477 2fna_A Conserved hypothetical 92.7 0.032 1.1E-06 40.0 1.1 18 1-18 36-53 (357)
478 3eie_A Vacuolar protein sortin 92.7 0.039 1.3E-06 39.6 1.5 17 1-17 57-73 (322)
479 4edh_A DTMP kinase, thymidylat 92.7 0.042 1.4E-06 37.2 1.6 16 2-17 13-28 (213)
480 3v9p_A DTMP kinase, thymidylat 92.7 0.032 1.1E-06 38.2 1.0 16 2-17 32-47 (227)
481 3pxg_A Negative regulator of g 92.7 0.032 1.1E-06 42.3 1.0 18 1-18 207-224 (468)
482 4b4t_L 26S protease subunit RP 92.7 0.041 1.4E-06 41.4 1.6 16 2-17 222-237 (437)
483 3cwq_A Para family chromosome 92.7 0.85 2.9E-05 30.3 8.0 86 42-148 67-153 (209)
484 3uk6_A RUVB-like 2; hexameric 92.6 0.033 1.1E-06 40.4 1.1 17 1-17 76-92 (368)
485 1a7j_A Phosphoribulokinase; tr 92.6 0.027 9.3E-07 39.9 0.5 16 2-17 12-27 (290)
486 2iw3_A Elongation factor 3A; a 92.6 0.039 1.3E-06 45.6 1.5 20 1-20 467-486 (986)
487 2qgz_A Helicase loader, putati 92.5 0.045 1.5E-06 39.1 1.6 17 1-17 158-174 (308)
488 2qmh_A HPR kinase/phosphorylas 92.5 0.043 1.5E-06 36.9 1.4 18 1-18 40-57 (205)
489 2grj_A Dephospho-COA kinase; T 92.5 0.048 1.6E-06 36.3 1.6 17 1-17 18-34 (192)
490 2z4s_A Chromosomal replication 92.4 0.045 1.5E-06 41.2 1.5 17 1-17 136-152 (440)
491 4b4t_J 26S protease regulatory 92.4 0.046 1.6E-06 40.7 1.5 16 2-17 189-204 (405)
492 3m6a_A ATP-dependent protease 92.4 0.038 1.3E-06 42.7 1.1 17 1-17 114-130 (543)
493 3ux8_A Excinuclease ABC, A sub 92.4 0.036 1.2E-06 43.9 1.0 15 1-15 354-368 (670)
494 2zts_A Putative uncharacterize 92.3 0.054 1.8E-06 36.8 1.7 15 2-16 37-51 (251)
495 2ocp_A DGK, deoxyguanosine kin 92.3 0.042 1.4E-06 37.6 1.1 16 2-17 9-24 (241)
496 3hjn_A DTMP kinase, thymidylat 92.3 0.053 1.8E-06 36.2 1.6 16 2-17 7-22 (197)
497 2qby_B CDC6 homolog 3, cell di 92.3 0.041 1.4E-06 40.0 1.1 18 1-18 51-68 (384)
498 3te6_A Regulatory protein SIR3 92.2 0.033 1.1E-06 40.1 0.5 17 2-18 52-68 (318)
499 3qkt_A DNA double-strand break 92.2 0.048 1.6E-06 39.5 1.4 16 1-16 29-44 (339)
500 2orw_A Thymidine kinase; TMTK, 92.1 0.047 1.6E-06 36.0 1.2 16 1-16 9-24 (184)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=4.2e-41 Score=232.16 Aligned_cols=143 Identities=36% Similarity=0.503 Sum_probs=126.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
||++|||||||++||+.+.|...+.+|++..+ .+.+.+++..+.++||||+|+++|..+++.++++++++++|||++++
T Consensus 19 vGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~ 98 (216)
T 4dkx_A 19 LGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNV 98 (216)
T ss_dssp ECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCH
T ss_pred ECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchh
Confidence 69999999999999999999999999999554 77888899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+||+.+..|+..+....... +|++|||||+|+.+.++++.++++.++++++++|+||||++|+|
T Consensus 99 ~Sf~~i~~~~~~i~~~~~~~--------------~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~n 162 (216)
T 4dkx_A 99 NSFQQTTKWIDDVRTERGSD--------------VIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYN 162 (216)
T ss_dssp HHHHTHHHHHHHHHHHHTTS--------------SEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBS
T ss_pred HHHHHHHHHHHHHHHhcCCC--------------CeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcC
Confidence 99999999999998776543 99999999999998899999999999999999999999999987
No 2
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=9.3e-35 Score=194.82 Aligned_cols=144 Identities=72% Similarity=1.169 Sum_probs=132.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++.+|++++|||+++++
T Consensus 12 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 91 (181)
T 3t5g_A 12 LGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIK 91 (181)
T ss_dssp EESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHH
T ss_pred ECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHH
Confidence 69999999999999999999888999999888888889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+++.+..|+..+........ +|+++|+||+|+.+.+.+..+++..+++.++++++++||++|+|
T Consensus 92 s~~~~~~~~~~~~~~~~~~~-------------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (181)
T 3t5g_A 92 SFEVIKVIHGKLLDMVGKVQ-------------IPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQT 155 (181)
T ss_dssp HHHHHHHHHHHHHHHC-----------------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHH
T ss_pred HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCC
Confidence 99999999999987765444 99999999999988889999999999999999999999999864
No 3
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=3.2e-34 Score=192.52 Aligned_cols=144 Identities=40% Similarity=0.636 Sum_probs=133.7
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.++++..+...+.+++..+.+.+||++|++.+..++..+++.+|++|+|||+++++
T Consensus 24 ~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 103 (183)
T 3kkq_A 24 VGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKA 103 (183)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHH
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHH
Confidence 69999999999999999999888889998888888889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccc-cCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAK-QDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~-~~~~ 157 (157)
+++.+..|+..+........ +|+++|+||+|+.+.+.+..+++..+++.++++++++||+ +|+|
T Consensus 104 s~~~~~~~~~~~~~~~~~~~-------------~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~ 168 (183)
T 3kkq_A 104 SFEHVDRFHQLILRVKDRES-------------FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLN 168 (183)
T ss_dssp HHHTHHHHHHHHHHHHTSSC-------------CCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBS
T ss_pred HHHHHHHHHHHHHHhcCCCC-------------CcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCC
Confidence 99999999999987665444 9999999999998888999999999999999999999999 8876
No 4
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=194.17 Aligned_cols=145 Identities=30% Similarity=0.497 Sum_probs=126.5
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+++||++|++++..+ ..+++++|++|+|||+++++
T Consensus 27 vG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~ 105 (187)
T 3c5c_A 27 LGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQ 105 (187)
T ss_dssp ECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHH
T ss_pred ECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHH
Confidence 69999999999999999999888999999888777888999999999999999998886 67899999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEecc-ccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA-KQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa-~~~~~ 157 (157)
+++.+..|+..+....... ...+|++|||||+|+...+.+..+++..+++.++++++++|| ++|+|
T Consensus 106 s~~~~~~~~~~i~~~~~~~-----------~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~g 172 (187)
T 3c5c_A 106 SFDSSSSYLELLALHAKET-----------QRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEH 172 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----------CCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHH
T ss_pred HHHHHHHHHHHHHHHhhcc-----------CCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCcccc
Confidence 9999999999988765320 012999999999999877888999999999999999999999 88864
No 5
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=1.7e-34 Score=198.94 Aligned_cols=142 Identities=23% Similarity=0.375 Sum_probs=127.7
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++++|++|+|||+++++
T Consensus 33 vG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 112 (214)
T 3q3j_B 33 VGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPE 112 (214)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTH
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHH
Confidence 69999999999999999999988999999888777888888999999999999999999999999999999999999999
Q ss_pred hHHH-HHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-c
Q psy1873 81 SFEV-VQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWKA-G 146 (157)
Q Consensus 81 s~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~ 146 (157)
+++. +..|+..+..... . +|++|||||+|+.+. +.+..+++..+++.+++ +
T Consensus 113 s~~~~~~~~~~~i~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 177 (214)
T 3q3j_B 113 TVDSALKKWRTEILDYCP--S-------------TRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEI 177 (214)
T ss_dssp HHHHHHTHHHHHHHHHCT--T-------------SEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCE
Confidence 9999 6888888876643 2 999999999999653 67899999999999999 9
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
|+||||++|+|
T Consensus 178 ~~e~SA~~g~g 188 (214)
T 3q3j_B 178 YLEGSAFTSEK 188 (214)
T ss_dssp EEECCTTTCHH
T ss_pred EEEeccCCCcc
Confidence 99999999864
No 6
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=1.9e-34 Score=193.68 Aligned_cols=143 Identities=29% Similarity=0.492 Sum_probs=100.6
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++++..++..+++++|++|+|||++++
T Consensus 14 ~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 93 (183)
T 2fu5_C 14 IGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNE 93 (183)
T ss_dssp ECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCH
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCH
Confidence 69999999999999999888877888888555 56777899889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+....... +|++||+||+|+.+.+.+..+++..+++.++++++++||++|+|
T Consensus 94 ~s~~~~~~~~~~i~~~~~~~--------------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 157 (183)
T 2fu5_C 94 KSFDNIRNWIRNIEEHASAD--------------VEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANIN 157 (183)
T ss_dssp HHHHHHHHHHHHHHHHSCTT--------------CEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CC
T ss_pred HHHHHHHHHHHHHHHhcCCC--------------CCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 99999999998887764322 99999999999988788888999999999999999999999986
No 7
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=4.3e-34 Score=188.89 Aligned_cols=144 Identities=40% Similarity=0.714 Sum_probs=131.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++.+|++++|||++++.
T Consensus 9 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 88 (167)
T 1c1y_A 9 LGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQS 88 (167)
T ss_dssp ECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHH
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHH
Confidence 69999999999999999998888889988777777788888899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESW-KAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~ 157 (157)
+++.+..|+..+........ .|+++|+||+|+.+.+.+..+++..+++.+ +++++++||++|+|
T Consensus 89 s~~~~~~~~~~i~~~~~~~~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (167)
T 1c1y_A 89 TFNDLQDLREQILRVKDTED-------------VPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKIN 153 (167)
T ss_dssp HHHTHHHHHHHHHHHHCCSC-------------CCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBS
T ss_pred HHHHHHHHHHHHHHhhCcCC-------------CcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCC
Confidence 99999999999887764333 999999999999887888889999999988 78999999999986
No 8
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=8.5e-34 Score=189.71 Aligned_cols=144 Identities=38% Similarity=0.634 Sum_probs=132.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++.+|++++|||+++++
T Consensus 15 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 94 (181)
T 2fn4_A 15 VGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQ 94 (181)
T ss_dssp EECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHH
T ss_pred ECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHH
Confidence 69999999999999999999888889998877777888998899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+++.+..|+..++....... +|+++|+||+|+...+.+..+++..++..++++++++||++|+|
T Consensus 95 s~~~~~~~~~~~~~~~~~~~-------------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (181)
T 2fn4_A 95 SFNEVGKLFTQILRVKDRDD-------------FPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLN 158 (181)
T ss_dssp HHHHHHHHHHHHHHHHTSSC-------------CCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBS
T ss_pred HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCC
Confidence 99999999999977665433 99999999999987778888999999999999999999999986
No 9
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1.1e-33 Score=187.52 Aligned_cols=143 Identities=34% Similarity=0.499 Sum_probs=123.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++++|||++++
T Consensus 12 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 91 (170)
T 1z08_A 12 LGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDE 91 (170)
T ss_dssp ECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCH
T ss_pred ECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCH
Confidence 69999999999999999988888888888665 56777888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+....... +|+++|+||+|+.+.+.+..+++..+++.++++++++||++|+|
T Consensus 92 ~s~~~~~~~~~~~~~~~~~~--------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 155 (170)
T 1z08_A 92 DSFQKVKNWVKELRKMLGNE--------------ICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKG 155 (170)
T ss_dssp HHHHHHHHHHHHHHHHHGGG--------------SEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBS
T ss_pred HHHHHHHHHHHHHHHhcCCC--------------CeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCC
Confidence 99999999998887665433 99999999999987778888999999999999999999999986
No 10
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=9.4e-34 Score=192.65 Aligned_cols=144 Identities=26% Similarity=0.347 Sum_probs=123.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcC-chhhhccCCCEEEEEEECCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSI-FPAQYSMDIHGYVLVYSITS 78 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~ilv~d~~~ 78 (157)
||++|||||||+++|++......+.++++ +.+...+.+++..+.+.+||++|++.+.. ++..+++.+|++|+|||+++
T Consensus 29 vG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~ 108 (195)
T 3cbq_A 29 VGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTD 108 (195)
T ss_dssp ECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTC
T ss_pred ECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCC
Confidence 69999999999999986655433444444 55577788899999999999999998775 78888999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+++|+.+..|+..+........ +|+++||||+|+.+.+.+..+++..+++.++++++|+||++|+|
T Consensus 109 ~~s~~~~~~~~~~i~~~~~~~~-------------~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~ 174 (195)
T 3cbq_A 109 RRSFSKVPETLLRLRAGRPHHD-------------LPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHN 174 (195)
T ss_dssp HHHHHTHHHHHHHHHHHSTTSC-------------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBS
T ss_pred HHHHHHHHHHHHHHHHhcCCCC-------------CCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCC
Confidence 9999999999998877654223 99999999999988788888999999999999999999999986
No 11
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=4.7e-34 Score=194.89 Aligned_cols=143 Identities=31% Similarity=0.476 Sum_probs=121.7
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus 35 vG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~ 114 (201)
T 2hup_A 35 VGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKR 114 (201)
T ss_dssp EECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBH
T ss_pred ECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCH
Confidence 69999999999999999998888888888555 67778889889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~ 157 (157)
++++.+..|+..+....... +|++||+||+|+.+.+.+..+++..+++.+++ +++++||++|+|
T Consensus 115 ~s~~~~~~~~~~i~~~~~~~--------------~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g 179 (201)
T 2hup_A 115 SSFLSVPHWIEDVRKYAGSN--------------IVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSN 179 (201)
T ss_dssp HHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBS
T ss_pred HHHHHHHHHHHHHHHhcCCC--------------CCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCC
Confidence 99999999999887765322 99999999999987778888999999999999 999999999986
No 12
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=1.1e-33 Score=186.89 Aligned_cols=143 Identities=31% Similarity=0.374 Sum_probs=106.6
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|.+..+. ...++.+..+...+.+++..+.+.+||++|++.+..++..+++.++++++|||+++++
T Consensus 8 vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 86 (166)
T 3q72_A 8 LGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKG 86 (166)
T ss_dssp EESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEETTCHH
T ss_pred ECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHH
Confidence 699999999999999976654 3345666667777889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+++.+..|+..+........ +|+++|+||+|+.+.+.+..+++..++..++++++++||++|+|
T Consensus 87 s~~~~~~~~~~~~~~~~~~~-------------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 150 (166)
T 3q72_A 87 SFEKASELRVQLRRARQTDD-------------VPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHN 150 (166)
T ss_dssp HHHHHHHHHHHHHHCC---C-------------CCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBS
T ss_pred HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCC
Confidence 99999999999887654333 99999999999988889999999999999999999999999986
No 13
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=9.3e-34 Score=187.17 Aligned_cols=144 Identities=34% Similarity=0.633 Sum_probs=129.6
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++.+|++++|||+++++
T Consensus 10 ~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 89 (168)
T 1u8z_A 10 VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME 89 (168)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHH
T ss_pred ECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHH
Confidence 69999999999999999998888888888777777788999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+++.+..|+..+........ .|+++|+||+|+.+.+.+..+++..+++.++++++++||++|+|
T Consensus 90 s~~~~~~~~~~i~~~~~~~~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (168)
T 1u8z_A 90 SFAATADFREQILRVKEDEN-------------VPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRAN 153 (168)
T ss_dssp HHHHHHHHHHHHHHHHCCTT-------------SCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred HHHHHHHHHHHHHHhcCCCC-------------CcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCC
Confidence 99999999999988776433 99999999999987778888999999999999999999999986
No 14
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7e-34 Score=194.21 Aligned_cols=143 Identities=31% Similarity=0.474 Sum_probs=129.5
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus 32 vG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~ 111 (201)
T 2ew1_A 32 IGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCE 111 (201)
T ss_dssp EESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCH
T ss_pred ECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCH
Confidence 69999999999999999998888888888555 67778899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+....... .|+++|+||+|+.+.+.+..+++..++...+++++++||++|+|
T Consensus 112 ~s~~~~~~~~~~i~~~~~~~--------------~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~g 175 (201)
T 2ew1_A 112 ESFRCLPEWLREIEQYASNK--------------VITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDN 175 (201)
T ss_dssp HHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTT
T ss_pred HHHHHHHHHHHHHHHhcCCC--------------CCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 99999999998887665332 89999999999987778888999999999999999999999986
No 15
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=2.1e-33 Score=185.97 Aligned_cols=143 Identities=31% Similarity=0.484 Sum_probs=129.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus 12 ~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 91 (170)
T 1r2q_A 12 LGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNE 91 (170)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCH
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCH
Confidence 69999999999999999988877888888655 66777888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+....... +|+++|+||+|+.+.+.+..+++..++...+++++++||++|+|
T Consensus 92 ~s~~~~~~~~~~~~~~~~~~--------------~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 155 (170)
T 1r2q_A 92 ESFARAKNWVKELQRQASPN--------------IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMN 155 (170)
T ss_dssp HHHHHHHHHHHHHHHHSCTT--------------CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred HHHHHHHHHHHHHHHhcCCC--------------CcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 99999999999887765332 99999999999977778888899999999999999999999986
No 16
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=4.4e-33 Score=186.42 Aligned_cols=143 Identities=29% Similarity=0.433 Sum_probs=129.7
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus 18 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 97 (181)
T 2efe_B 18 LGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQ 97 (181)
T ss_dssp ECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCH
T ss_pred ECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCH
Confidence 69999999999999999998887778888555 67777888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+....... +|+++|+||+|+.+.+.+..+++..+++.++++++++||++|+|
T Consensus 98 ~s~~~~~~~~~~~~~~~~~~--------------~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 161 (181)
T 2efe_B 98 ASFERAKKWVQELQAQGNPN--------------MVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATN 161 (181)
T ss_dssp HHHHHHHHHHHHHHHHSCTT--------------CEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTT
T ss_pred HHHHHHHHHHHHHHHhcCCC--------------CcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence 99999999999888765332 99999999999987788888999999999999999999999986
No 17
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=2.8e-33 Score=189.76 Aligned_cols=142 Identities=27% Similarity=0.409 Sum_probs=127.6
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+++||++|++++..++..+++++|++|+|||+++++
T Consensus 29 vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 108 (194)
T 3reg_A 29 VGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRT 108 (194)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH
T ss_pred ECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHH
Confidence 69999999999999999999888899999888778889999999999999999999999999999999999999999999
Q ss_pred hHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC--CceecHHHHHHHHHHhCCc-EEEeccccCC
Q psy1873 81 SFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM--ERMISYDEGKRLAESWKAG-FVEASAKQDD 156 (157)
Q Consensus 81 s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~ 156 (157)
+++.+ ..|+..+..... . +|+++|+||+|+.+ .+.+..+++..+++.++++ ++++||++|+
T Consensus 109 s~~~~~~~~~~~~~~~~~-~--------------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 173 (194)
T 3reg_A 109 SFDNISTKWEPEIKHYID-T--------------AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKI 173 (194)
T ss_dssp HHHHHHHTHHHHHHHHCT-T--------------SEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTB
T ss_pred HHHHHHHHHHHHHHHhCC-C--------------CCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCC
Confidence 99998 566666654432 2 99999999999965 3778899999999999997 9999999998
Q ss_pred C
Q psy1873 157 Y 157 (157)
Q Consensus 157 ~ 157 (157)
|
T Consensus 174 g 174 (194)
T 3reg_A 174 G 174 (194)
T ss_dssp S
T ss_pred C
Confidence 6
No 18
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=6.5e-34 Score=187.76 Aligned_cols=144 Identities=38% Similarity=0.708 Sum_probs=131.5
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.++++..+...+.+++..+.+.+||++|++++..++..+++.++++++|||++++.
T Consensus 9 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 88 (167)
T 1kao_A 9 LGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQ 88 (167)
T ss_dssp ECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH
T ss_pred ECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHH
Confidence 69999999999999999998888888888777788888999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+++.+..|+..+........ .|+++|+||+|+...+++...++..+++.++++++++||++|+|
T Consensus 89 s~~~~~~~~~~i~~~~~~~~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 152 (167)
T 1kao_A 89 SFQDIKPMRDQIIRVKRYEK-------------VPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTM 152 (167)
T ss_dssp HHHHHHHHHHHHHHHTTTSC-------------CCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcC
Confidence 99999999999987765433 99999999999987778888999999999999999999999864
No 19
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.6e-34 Score=194.34 Aligned_cols=144 Identities=55% Similarity=0.947 Sum_probs=126.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++.+|++|+|||+++++
T Consensus 30 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 109 (201)
T 3oes_A 30 LGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLH 109 (201)
T ss_dssp EESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHH
T ss_pred ECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHH
Confidence 69999999999999999999888889988777777777888899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+++.+..|+..+........ +|++||+||+|+...+.+...++..+++.++++++++||++|+|
T Consensus 110 s~~~~~~~~~~i~~~~~~~~-------------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 173 (201)
T 3oes_A 110 SFQVIESLYQKLHEGHGKTR-------------VPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQL 173 (201)
T ss_dssp HHHHHHHHHHHHHC-----C-------------CCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCC
Confidence 99999999999887654433 99999999999988888999999999999999999999999864
No 20
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=2.1e-33 Score=190.07 Aligned_cols=143 Identities=31% Similarity=0.465 Sum_probs=125.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++++..++..+++++|++|+|||++++
T Consensus 27 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~ 106 (191)
T 2a5j_A 27 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR 106 (191)
T ss_dssp ESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCH
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCH
Confidence 69999999999999999998877778877555 66778899889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++++.+..|+..+....... .|++||+||+|+...+.+..+++..+++.++++++++||++|+|
T Consensus 107 ~s~~~~~~~l~~i~~~~~~~--------------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 170 (191)
T 2a5j_A 107 ETFNHLTSWLEDARQHSSSN--------------MVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACN 170 (191)
T ss_dssp HHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTT
T ss_pred HHHHHHHHHHHHHHHhcCCC--------------CCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 99999999998887664332 99999999999987778888999999999999999999999986
No 21
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=4.1e-33 Score=188.85 Aligned_cols=143 Identities=32% Similarity=0.557 Sum_probs=130.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++|+|||++++
T Consensus 22 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 101 (196)
T 3tkl_A 22 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ 101 (196)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCH
T ss_pred ECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCH
Confidence 69999999999999999998888888887555 67778899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+....... +|+++|+||+|+...+.+...++..++..++++++++||++|+|
T Consensus 102 ~s~~~~~~~~~~i~~~~~~~--------------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 165 (196)
T 3tkl_A 102 ESFNNVKQWLQEIDRYASEN--------------VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 165 (196)
T ss_dssp HHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTT
T ss_pred HHHHHHHHHHHHHHHhcCCC--------------CCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 99999999998887765433 99999999999988888998999999999999999999999986
No 22
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=5.9e-33 Score=187.48 Aligned_cols=143 Identities=34% Similarity=0.544 Sum_probs=129.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.++++..+ ...+..++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus 28 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~ 107 (189)
T 2gf9_A 28 IGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQ 107 (189)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCH
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCH
Confidence 69999999999999999998878888888665 56677888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+....... .|++||+||+|+...+.+..++++.+++.++++++++||++|+|
T Consensus 108 ~s~~~~~~~~~~i~~~~~~~--------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 171 (189)
T 2gf9_A 108 ESFAAVQDWATQIKTYSWDN--------------AQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENIN 171 (189)
T ss_dssp HHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred HHHHHHHHHHHHHHHhcCCC--------------CCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 99999999998887664222 99999999999987778888899999999999999999999986
No 23
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=2.6e-33 Score=191.19 Aligned_cols=144 Identities=35% Similarity=0.636 Sum_probs=132.6
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++.+|++++|||+++++
T Consensus 20 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 99 (206)
T 2bov_A 20 VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME 99 (206)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHH
Confidence 69999999999999999998888889988877777888999899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+++.+..|+..+........ +|++||+||+|+.+.+.+..+++..+++.++++++++||++|+|
T Consensus 100 s~~~~~~~~~~i~~~~~~~~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 163 (206)
T 2bov_A 100 SFAATADFREQILRVKEDEN-------------VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 163 (206)
T ss_dssp HHHHHHHHHHHHHHHTTCSC-------------CCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTT
T ss_pred HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCC
Confidence 99999999999988765433 99999999999987778888999999999999999999999986
No 24
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.5e-33 Score=185.73 Aligned_cols=142 Identities=32% Similarity=0.495 Sum_probs=127.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++|+|||++++
T Consensus 15 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 94 (181)
T 3tw8_B 15 IGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSA 94 (181)
T ss_dssp ECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCH
T ss_pred ECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCH
Confidence 69999999999999999988878888887555 67778899889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+...... .|+++|+||+|+.+.+.+...++..++..++++++++||++|+|
T Consensus 95 ~s~~~~~~~~~~~~~~~~~---------------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (181)
T 3tw8_B 95 ESFVNVKRWLHEINQNCDD---------------VCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVN 157 (181)
T ss_dssp HHHHHHHHHHHHHHHHCTT---------------SEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBS
T ss_pred HHHHHHHHHHHHHHHhCCC---------------CCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 9999999999988765432 99999999999988888888999999999999999999999986
No 25
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=3.7e-33 Score=184.76 Aligned_cols=143 Identities=32% Similarity=0.520 Sum_probs=128.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++++|||++++
T Consensus 9 ~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 88 (170)
T 1ek0_A 9 LGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKP 88 (170)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCH
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCCh
Confidence 69999999999999999998888888888655 67778888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC---ceecHHHHHHHHHHhCCcEEEeccccCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME---RMISYDEGKRLAESWKAGFVEASAKQDD 156 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 156 (157)
.+++.+..|+..+....... .|+++|+||+|+.+. +.+..+++..++..++++++++||++|+
T Consensus 89 ~s~~~~~~~~~~~~~~~~~~--------------~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (170)
T 1ek0_A 89 QSFIKARHWVKELHEQASKD--------------IIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGE 154 (170)
T ss_dssp HHHHHHHHHHHHHHHHSCTT--------------CEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred HHHHHHHHHHHHHHHhcCCC--------------CcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 99999999999888765332 999999999999655 6788889999999999999999999998
Q ss_pred C
Q psy1873 157 Y 157 (157)
Q Consensus 157 ~ 157 (157)
|
T Consensus 155 g 155 (170)
T 1ek0_A 155 N 155 (170)
T ss_dssp T
T ss_pred C
Confidence 6
No 26
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=2.8e-33 Score=188.69 Aligned_cols=138 Identities=26% Similarity=0.438 Sum_probs=122.5
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+| ...+...+.+++..+.+++||++|++++. +++.+|++++|||++++.
T Consensus 26 vG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~ 99 (184)
T 3ihw_A 26 VGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEI 99 (184)
T ss_dssp ECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHH
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHH
Confidence 699999999999999999998878787 44567888899999999999999998876 778899999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC--CCceecHHHHHHHHHHhC-CcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH--MERMISYDEGKRLAESWK-AGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~ 157 (157)
+|+.+..|+..+........ +|++|||||+|+. ..+.+..+++..++..++ ++|++|||++|+|
T Consensus 100 s~~~~~~~~~~i~~~~~~~~-------------~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 100 SFQTVYNYFLRLCSFRNASE-------------VPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN 166 (184)
T ss_dssp HHHHHHHHHHHHHTTSCGGG-------------SCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence 99999999999877654333 9999999999994 567888999999999997 8999999999986
No 27
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=1.9e-33 Score=186.36 Aligned_cols=144 Identities=25% Similarity=0.326 Sum_probs=115.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcC-chhhhccCCCEEEEEEECCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSI-FPAQYSMDIHGYVLVYSITS 78 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~ilv~d~~~ 78 (157)
+|++|||||||+++|++..+...+.++.. ..+...+.+++..+.+.+||++|++++.. ++..+++.+|++++|||+++
T Consensus 8 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~ 87 (169)
T 3q85_A 8 VGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTD 87 (169)
T ss_dssp ECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTC
T ss_pred ECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCC
Confidence 69999999999999997766544444444 55577788999999999999999999876 78888999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+++++.+..|+..+........ +|+++|+||+|+.+.+.+..+++..+++.++++++++||++|+|
T Consensus 88 ~~s~~~~~~~~~~~~~~~~~~~-------------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (169)
T 3q85_A 88 RRSFSKVPETLLRLRAGRPHHD-------------LPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHN 153 (169)
T ss_dssp HHHHHTHHHHHHHHHHHSTTSC-------------CCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBS
T ss_pred hHHHHHHHHHHHHHHhcccCCC-------------CCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCC
Confidence 9999999999999988765333 99999999999988888999999999999999999999999986
No 28
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.2e-33 Score=188.81 Aligned_cols=142 Identities=27% Similarity=0.468 Sum_probs=127.8
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++++|++|+|||+++++
T Consensus 24 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 103 (194)
T 2atx_A 24 VGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPA 103 (194)
T ss_dssp EECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHH
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHH
Confidence 69999999999999999998888889998878777888888899999999999999999999999999999999999999
Q ss_pred hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-c
Q psy1873 81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWKA-G 146 (157)
Q Consensus 81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~ 146 (157)
+++.+. .|+..+..... . +|++||+||+|+.+. +.+..+++..+++.+++ +
T Consensus 104 s~~~~~~~~~~~~~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 168 (194)
T 2atx_A 104 SFQNVKEEWVPELKEYAP--N-------------VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACC 168 (194)
T ss_dssp HHHHHHHTHHHHHHHHST--T-------------CCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcE
Confidence 999997 78777776533 2 999999999999653 46888999999999998 9
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
++++||++|+|
T Consensus 169 ~~~~Sa~~g~g 179 (194)
T 2atx_A 169 YVECSALTQKG 179 (194)
T ss_dssp EEECCTTTCTT
T ss_pred EEEeeCCCCCC
Confidence 99999999986
No 29
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=6.7e-33 Score=189.53 Aligned_cols=143 Identities=33% Similarity=0.556 Sum_probs=129.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus 14 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~ 93 (206)
T 2bcg_Y 14 IGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQ 93 (206)
T ss_dssp EESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCH
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCH
Confidence 69999999999999999999888888888655 66778899889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+....... .|++||+||+|+...+.+..+++..++..++++++++||++|+|
T Consensus 94 ~s~~~~~~~~~~i~~~~~~~--------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 157 (206)
T 2bcg_Y 94 ESFNGVKMWLQEIDRYATST--------------VLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN 157 (206)
T ss_dssp HHHHHHHHHHHHHHHHSCTT--------------CEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTT
T ss_pred HHHHHHHHHHHHHHHhcCCC--------------CCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 99999999998887665332 99999999999988788888999999999999999999999986
No 30
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=7.8e-33 Score=183.28 Aligned_cols=143 Identities=30% Similarity=0.417 Sum_probs=129.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus 12 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 91 (170)
T 1z0j_A 12 LGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKE 91 (170)
T ss_dssp ECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCH
T ss_pred ECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCH
Confidence 69999999999999999998888888888655 66778888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+....... .|+++|+||+|+.+.+++..+++..+++.++++++++||++|+|
T Consensus 92 ~s~~~~~~~~~~l~~~~~~~--------------~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (170)
T 1z0j_A 92 ETFSTLKNWVRELRQHGPPS--------------IVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAIN 155 (170)
T ss_dssp HHHHHHHHHHHHHHHHSCTT--------------SEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBS
T ss_pred HHHHHHHHHHHHHHHhCCCC--------------CcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcC
Confidence 99999999998887754332 99999999999987778888999999999999999999999986
No 31
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=4.7e-33 Score=185.27 Aligned_cols=143 Identities=32% Similarity=0.404 Sum_probs=114.6
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCcc--CcCchhhhccCCCEEEEEEECC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDE--YSIFPAQYSMDIHGYVLVYSIT 77 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~~~~ilv~d~~ 77 (157)
+|++|||||||+++|++..+...+. +.+ ..+...+.+++..+.+.+||++|++. +..+...+++.++++++|||++
T Consensus 10 ~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~ 88 (175)
T 2nzj_A 10 LGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIA 88 (175)
T ss_dssp ECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETT
T ss_pred ECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECC
Confidence 6999999999999999988765443 444 44467778899999999999999988 5667888999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 78 SHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 78 ~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
++.+++.+..|+..+........ +|+++|+||+|+.+.+.+..+++..++..++++++++||++|+|
T Consensus 89 ~~~s~~~~~~~~~~l~~~~~~~~-------------~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~g 155 (175)
T 2nzj_A 89 DRGSFESASELRIQLRRTHQADH-------------VPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHN 155 (175)
T ss_dssp CHHHHHHHHHHHHHHHHCC-----------------CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBS
T ss_pred CHHHHHHHHHHHHHHHHhhccCC-------------CCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 99999999999888876533222 99999999999988788888899999999999999999999986
No 32
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=3e-33 Score=187.90 Aligned_cols=144 Identities=35% Similarity=0.636 Sum_probs=132.6
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++.+|++++|||+++++
T Consensus 24 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 103 (187)
T 2a9k_A 24 VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME 103 (187)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHH
T ss_pred ECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHH
Confidence 69999999999999999998888888888777777888999899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+++.+..|+..+........ +|+++|+||+|+.+.+.+..+++..+++.++++++++||++|+|
T Consensus 104 s~~~~~~~~~~i~~~~~~~~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 167 (187)
T 2a9k_A 104 SFAATADFREQILRVKEDEN-------------VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 167 (187)
T ss_dssp HHHHHHHHHHHHHHHHCCTT-------------CCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred HHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCC
Confidence 99999999999988776433 99999999999987778888999999999999999999999986
No 33
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=4.8e-33 Score=185.73 Aligned_cols=143 Identities=31% Similarity=0.489 Sum_probs=129.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus 21 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 100 (179)
T 1z0f_A 21 IGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR 100 (179)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCH
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCH
Confidence 69999999999999999998888888888555 66777888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+....... .|+++|+||+|+.+.+.+..+++..+++.++++++++||++|+|
T Consensus 101 ~s~~~~~~~~~~~~~~~~~~--------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (179)
T 1z0f_A 101 STYNHLSSWLTDARNLTNPN--------------TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGEN 164 (179)
T ss_dssp HHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred HHHHHHHHHHHHHHHhcCCC--------------CcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 99999999998887765332 99999999999987778888999999999999999999999986
No 34
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=4.6e-33 Score=187.98 Aligned_cols=142 Identities=28% Similarity=0.473 Sum_probs=128.8
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCc-CchhhhccCCCEEEEEEECCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYS-IFPAQYSMDIHGYVLVYSITS 78 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~ilv~d~~~ 78 (157)
+|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++++. .++..+++.+|++|+|||+++
T Consensus 26 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~ 105 (189)
T 1z06_A 26 IGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTN 105 (189)
T ss_dssp ECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTC
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcC
Confidence 69999999999999999998888888888554 6777888988999999999999998 889999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccC
Q psy1873 79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155 (157)
Q Consensus 79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 155 (157)
+.+++.+..|+..+........ .|++||+||+|+.+.+.+..+++..+++.++++++++||++|
T Consensus 106 ~~s~~~~~~~~~~i~~~~~~~~-------------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 169 (189)
T 1z06_A 106 MASFHSLPAWIEECKQHLLAND-------------IPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNP 169 (189)
T ss_dssp HHHHHTHHHHHHHHHHHCCCSC-------------CCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSG
T ss_pred HHHHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcC
Confidence 9999999999999988764333 999999999999877788889999999999999999999998
No 35
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=2.5e-33 Score=187.21 Aligned_cols=145 Identities=28% Similarity=0.385 Sum_probs=126.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccc-eEEEEEEECC-eEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIEN-TFVKTTRMNN-QDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS 78 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~ 78 (157)
+|++|||||||+++|+++.+...+.+|++. .+...+.+++ ..+.+.+||++|++.+..++..+++.+|++|+|||+++
T Consensus 12 ~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 91 (178)
T 2hxs_A 12 LGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITN 91 (178)
T ss_dssp ECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTC
T ss_pred ECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCC
Confidence 699999999999999999888777888874 4467777776 67899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+++++.+..|+..+........ ..| +++|+||+|+.+.+.+..+++..+++.++++++++||++|+|
T Consensus 92 ~~s~~~~~~~~~~i~~~~~~~~------------~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 159 (178)
T 2hxs_A 92 YQSFENLEDWYTVVKKVSEESE------------TQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDS 159 (178)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHT------------CCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC------------CCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 9999999999888876543110 145 899999999987778888999999999999999999999986
No 36
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=6.9e-33 Score=188.71 Aligned_cols=142 Identities=30% Similarity=0.460 Sum_probs=120.7
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++++|++|+|||++++.
T Consensus 26 ~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 105 (201)
T 2q3h_A 26 VGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPS 105 (201)
T ss_dssp ECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHH
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHH
Confidence 69999999999999999998888889998878778888999999999999999999999999999999999999999999
Q ss_pred hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhCC-c
Q psy1873 81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM------------ERMISYDEGKRLAESWKA-G 146 (157)
Q Consensus 81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~ 146 (157)
+++.+. .|+..+..... . +|++||+||+|+.. .+.+..+++..+++.+++ +
T Consensus 106 s~~~~~~~~~~~~~~~~~--~-------------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 170 (201)
T 2q3h_A 106 SFQNVSEKWVPEIRCHCP--K-------------APIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAAS 170 (201)
T ss_dssp HHHHHHHTHHHHHHHHCS--S-------------SCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcE
Confidence 999996 68877766543 2 99999999999865 356788899999999998 9
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
|++|||++|+|
T Consensus 171 ~~~~Sa~~g~g 181 (201)
T 2q3h_A 171 YIECSALTQKN 181 (201)
T ss_dssp EEECCTTTCTT
T ss_pred EEEEecCCCCC
Confidence 99999999986
No 37
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=7.6e-33 Score=188.75 Aligned_cols=143 Identities=34% Similarity=0.530 Sum_probs=129.1
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.++++..+ ...+..++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus 14 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~ 93 (203)
T 1zbd_A 14 IGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNE 93 (203)
T ss_dssp ECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCH
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCH
Confidence 69999999999999999998888888888555 56777888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+....... .|+++|+||+|+.+.+.+..+++..+++.++++++++||++|+|
T Consensus 94 ~s~~~~~~~~~~i~~~~~~~--------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (203)
T 1zbd_A 94 ESFNAVQDWSTQIKTYSWDN--------------AQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNIN 157 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCSS--------------CEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred HHHHHHHHHHHHHHHhcCCC--------------CCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 99999999998887654322 99999999999988788888999999999999999999999986
No 38
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=5.3e-33 Score=185.81 Aligned_cols=140 Identities=21% Similarity=0.346 Sum_probs=120.8
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+.. +.+|++..+...+.+++..+.+++||++|+++ ..+++++|++|+|||+++++
T Consensus 13 vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~ 86 (178)
T 2iwr_A 13 LGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDEN 86 (178)
T ss_dssp ECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHH
T ss_pred ECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHH
Confidence 6999999999999999998876 77888888888888999999999999999987 56788999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC--CCceecHHHHHHHHHHh-CCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH--MERMISYDEGKRLAESW-KAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~ 157 (157)
+++.+..|+..+....... ...+|++|||||+|+. ..+.+..+++..++..+ +++++++||++|+|
T Consensus 87 s~~~~~~~~~~i~~~~~~~-----------~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (178)
T 2iwr_A 87 SFQAVSRLHGQLSSLRGEG-----------RGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLN 155 (178)
T ss_dssp HHHHHHHHHHHHHHHHCSS-----------SCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBT
T ss_pred HHHHHHHHHHHHHHHHhcC-----------CCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCC
Confidence 9999999877666554321 1238999999999993 46778889999999887 68999999999986
No 39
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.3e-33 Score=191.57 Aligned_cols=143 Identities=28% Similarity=0.382 Sum_probs=119.3
Q ss_pred CCCCCCChhhhHhhhhccc--ccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCcc-CcCchhhhccCCCEEEEEEEC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ--FVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDE-YSIFPAQYSMDIHGYVLVYSI 76 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~--~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~~ilv~d~ 76 (157)
||++|||||||+++|++.. +...+. +++ +.+...+.+++..+.+.+||++|++. +..+.+.+++.++++|+|||+
T Consensus 43 vG~~~vGKSSLl~r~~~~~~~~~~~~~-~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydv 121 (211)
T 2g3y_A 43 IGEQGVGKSTLANIFAGVHDSMDSDCE-VLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSI 121 (211)
T ss_dssp ECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEET
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCcCC-ccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEEC
Confidence 6999999999999999643 344443 345 55577788999999999999999887 556778889999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCC
Q psy1873 77 TSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156 (157)
Q Consensus 77 ~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 156 (157)
+++++|+.+..|+..+........ +|++|||||+|+.+.+.+..++++.++..++++|+||||++|+
T Consensus 122 t~~~sf~~~~~~~~~l~~~~~~~~-------------~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~ 188 (211)
T 2g3y_A 122 TDRASFEKASELRIQLRRARQTED-------------IPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQH 188 (211)
T ss_dssp TCHHHHHHHHHHHHHHHTSGGGTT-------------SCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCC-------------CcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 999999999999888765433222 9999999999998777888888999999999999999999998
Q ss_pred C
Q psy1873 157 Y 157 (157)
Q Consensus 157 ~ 157 (157)
|
T Consensus 189 ~ 189 (211)
T 2g3y_A 189 N 189 (211)
T ss_dssp S
T ss_pred C
Confidence 6
No 40
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=1.1e-32 Score=185.50 Aligned_cols=143 Identities=38% Similarity=0.632 Sum_probs=128.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|+...+...+.+++..+.+.+||++|++.+..++..+++.+|++++|||++++.
T Consensus 10 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 89 (189)
T 4dsu_A 10 VGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 89 (189)
T ss_dssp ECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHH
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 69999999999999999998888888888777888889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+++.+..|+..+........ .|+++|+||+|+. .+.+..+++..+++.++++++++||++|+|
T Consensus 90 s~~~~~~~~~~~~~~~~~~~-------------~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 152 (189)
T 4dsu_A 90 SFEDIHHYREQIKRVKDSED-------------VPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQG 152 (189)
T ss_dssp HHHHHHHHHHHHHHHTTCSC-------------CCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTT
T ss_pred HHHHHHHHHHHHHHhcCCCC-------------CcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 99999999999988765444 9999999999986 456778889999999999999999999986
No 41
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=6.2e-33 Score=183.45 Aligned_cols=142 Identities=35% Similarity=0.521 Sum_probs=129.1
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++++|||++++
T Consensus 11 ~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 90 (168)
T 1z2a_A 11 VGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDR 90 (168)
T ss_dssp ECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCH
T ss_pred ECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCH
Confidence 69999999999999999988888888888544 77778888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+..... . .|+++|+||+|+.+.+.+..+++..+++.++++++++||++|+|
T Consensus 91 ~s~~~~~~~~~~i~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (168)
T 1z2a_A 91 ESFEAISSWREKVVAEVG--D-------------IPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLN 153 (168)
T ss_dssp HHHHTHHHHHHHHHHHHC--S-------------CCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCC
Confidence 999999999998887762 2 99999999999987778888999999999999999999999986
No 42
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-32 Score=184.39 Aligned_cols=143 Identities=30% Similarity=0.526 Sum_probs=120.4
Q ss_pred CCCCCCChhhhHhhhhccccc-ccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS 78 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~ 78 (157)
+|++|||||||+++|+++.+. ..+.+|++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||+++
T Consensus 16 ~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 95 (180)
T 2g6b_A 16 VGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTN 95 (180)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTC
T ss_pred ECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCC
Confidence 699999999999999998884 46778888666 5556789988999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+.+++.+..|+..+....... .|+++|+||+|+...+.+..+++..+++.++++++++||++|+|
T Consensus 96 ~~s~~~~~~~~~~i~~~~~~~--------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (180)
T 2g6b_A 96 KASFDNIQAWLTEIHEYAQHD--------------VALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLN 160 (180)
T ss_dssp HHHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTT
T ss_pred HHHHHHHHHHHHHHHHhCCCC--------------CcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 999999999998887765422 99999999999988788888999999999999999999999986
No 43
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.8e-33 Score=189.46 Aligned_cols=143 Identities=36% Similarity=0.557 Sum_probs=130.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++. ..++..+++.+|++|+|||+++++
T Consensus 34 ~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~ 112 (196)
T 2atv_A 34 FGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRG 112 (196)
T ss_dssp ECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHH
T ss_pred ECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHH
Confidence 6999999999999999999988888998877777788899999999999999988 778899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCC-C
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD-Y 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~-~ 157 (157)
+++.+..|+..+........ +|++||+||+|+...+.+..+++..+++.++++++++||++|+ |
T Consensus 113 s~~~~~~~~~~i~~~~~~~~-------------~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~g 177 (196)
T 2atv_A 113 SFEEVLPLKNILDEIKKPKN-------------VTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGN 177 (196)
T ss_dssp HHHTHHHHHHHHHHHHTTSC-------------CCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTC
T ss_pred HHHHHHHHHHHHHHhhCCCC-------------CcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcC
Confidence 99999999998887654333 9999999999998778888899999999999999999999998 5
No 44
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=3.6e-33 Score=187.70 Aligned_cols=143 Identities=30% Similarity=0.465 Sum_probs=128.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus 16 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 95 (186)
T 2bme_A 16 IGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSR 95 (186)
T ss_dssp EESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCH
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCH
Confidence 69999999999999999998888888888554 67778888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+....... +|+++|+||+|+...+.+...++..++...+++++++||++|+|
T Consensus 96 ~s~~~~~~~~~~~~~~~~~~--------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 159 (186)
T 2bme_A 96 ETYNALTNWLTDARMLASQN--------------IVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEN 159 (186)
T ss_dssp HHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred HHHHHHHHHHHHHHHhcCCC--------------CcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCC
Confidence 99999999998887654432 99999999999977778888999999999999999999999986
No 45
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=2.9e-33 Score=188.36 Aligned_cols=142 Identities=24% Similarity=0.424 Sum_probs=124.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++.+..++..+++.+|++|+|||+++++
T Consensus 13 ~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 92 (184)
T 1m7b_A 13 VGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE 92 (184)
T ss_dssp EESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHH
Confidence 69999999999999999999888889988777777788888999999999999999999999999999999999999999
Q ss_pred hHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhC-Cc
Q psy1873 81 SFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWK-AG 146 (157)
Q Consensus 81 s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~ 146 (157)
+++.+ ..|+..+..... . +|+++||||+|+.+. +.+..+++..+++.++ ++
T Consensus 93 s~~~~~~~~~~~i~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (184)
T 1m7b_A 93 TLDSVLKKWKGEIQEFCP--N-------------TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 157 (184)
T ss_dssp HHHHHHHTHHHHHHHHCT--T-------------CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHCC--C-------------CCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcE
Confidence 99998 678777765432 2 999999999999642 5688899999999998 69
Q ss_pred EEEeccc-cCCC
Q psy1873 147 FVEASAK-QDDY 157 (157)
Q Consensus 147 ~~e~Sa~-~~~~ 157 (157)
|++|||+ +|+|
T Consensus 158 ~~e~Sa~~~~~g 169 (184)
T 1m7b_A 158 YIECSALQSENS 169 (184)
T ss_dssp EEECBTTTBHHH
T ss_pred EEEeeecCCCcC
Confidence 9999999 5643
No 46
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.3e-33 Score=188.27 Aligned_cols=143 Identities=32% Similarity=0.415 Sum_probs=128.7
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus 29 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~ 108 (192)
T 2fg5_A 29 LGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQ 108 (192)
T ss_dssp EECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCT
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCH
Confidence 69999999999999999998878888888665 56677788889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+....... +|+++|+||+|+.+.+.+..++++.+++..+++++++||++|+|
T Consensus 109 ~s~~~~~~~~~~i~~~~~~~--------------~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 172 (192)
T 2fg5_A 109 DSFYTLKKWVKELKEHGPEN--------------IVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAIN 172 (192)
T ss_dssp HHHHHHHHHHHHHHHHSCTT--------------CEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBS
T ss_pred HHHHHHHHHHHHHHHhCCCC--------------CcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcC
Confidence 99999999998887665322 99999999999977678888999999999999999999999986
No 47
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=5.6e-33 Score=184.01 Aligned_cols=142 Identities=34% Similarity=0.585 Sum_probs=121.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus 9 ~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 88 (170)
T 1g16_A 9 IGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDE 88 (170)
T ss_dssp EESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCH
T ss_pred ECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCH
Confidence 69999999999999999988877888888555 66777888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+....... .|+++|+||+|+ ..+.+..+++..+++.++++++++||++|+|
T Consensus 89 ~s~~~~~~~~~~i~~~~~~~--------------~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 151 (170)
T 1g16_A 89 RTFTNIKQWFKTVNEHANDE--------------AQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDN 151 (170)
T ss_dssp HHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBS
T ss_pred HHHHHHHHHHHHHHHhcCCC--------------CcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 99999999998887765332 999999999999 5567778889999999999999999999986
No 48
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-33 Score=191.70 Aligned_cols=143 Identities=29% Similarity=0.423 Sum_probs=121.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus 19 ~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~ 98 (223)
T 3cpj_B 19 IGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKS 98 (223)
T ss_dssp ESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCH
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCH
Confidence 69999999999999999998878888888555 66778889889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+....... +|++||+||+|+...+.+..+++..+++.++++++++||++|+|
T Consensus 99 ~s~~~~~~~l~~i~~~~~~~--------------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 162 (223)
T 3cpj_B 99 SSYENCNHWLSELRENADDN--------------VAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSEN 162 (223)
T ss_dssp HHHHHHHHHHHHHHHHCC----------------CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCC
T ss_pred HHHHHHHHHHHHHHHhCCCC--------------CeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 99999999999887664322 99999999999987778888999999999999999999999986
No 49
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=9.5e-33 Score=184.28 Aligned_cols=143 Identities=37% Similarity=0.505 Sum_probs=129.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus 20 ~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 99 (179)
T 2y8e_A 20 LGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNT 99 (179)
T ss_dssp EESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCH
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCH
Confidence 69999999999999999988888888887444 67778899889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+....... +|+++|+||+|+.+.+.+...++..++...+++++++||++|+|
T Consensus 100 ~s~~~~~~~~~~i~~~~~~~--------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (179)
T 2y8e_A 100 NSFHQTSKWIDDVRTERGSD--------------VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYN 163 (179)
T ss_dssp HHHHTHHHHHHHHHHHHTTS--------------SEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBS
T ss_pred HHHHHHHHHHHHHHHhcCCC--------------CcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 99999999999887765432 99999999999987788888999999999999999999999986
No 50
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=186.55 Aligned_cols=143 Identities=29% Similarity=0.456 Sum_probs=128.5
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus 31 ~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~ 110 (193)
T 2oil_A 31 IGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKH 110 (193)
T ss_dssp ESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCH
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCH
Confidence 69999999999999999998877888888655 56777888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+....... .|+++|+||+|+...+.+...++..+++..+++++++||++|+|
T Consensus 111 ~s~~~~~~~l~~i~~~~~~~--------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 174 (193)
T 2oil_A 111 QTYAVVERWLKELYDHAEAT--------------IVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTN 174 (193)
T ss_dssp HHHHTHHHHHHHHHTTSCTT--------------CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred HHHHHHHHHHHHHHHhcCCC--------------CeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 99999999998887654322 99999999999987778888999999999999999999999986
No 51
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=4e-33 Score=191.42 Aligned_cols=142 Identities=32% Similarity=0.476 Sum_probs=124.8
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++++|++|+|||+++++
T Consensus 15 ~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~ 94 (212)
T 2j0v_A 15 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKA 94 (212)
T ss_dssp EESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHH
T ss_pred ECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHH
Confidence 69999999999999999999888889999888777788898899999999999999999999999999999999999999
Q ss_pred hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce--------ecHHHHHHHHHHhCC-cEEEe
Q psy1873 81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM--------ISYDEGKRLAESWKA-GFVEA 150 (157)
Q Consensus 81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~e~ 150 (157)
+++.+. .|+..+..... . +|++||+||+|+...+. +..+++..+++.+++ +|+++
T Consensus 95 s~~~~~~~~~~~~~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 159 (212)
T 2j0v_A 95 SYENVLKKWMPELRRFAP--N-------------VPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIEC 159 (212)
T ss_dssp HHHHHHHTHHHHHHHHCT--T-------------CCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEc
Confidence 999996 78777765532 2 99999999999866544 377889999999996 99999
Q ss_pred ccccCCC
Q psy1873 151 SAKQDDY 157 (157)
Q Consensus 151 Sa~~~~~ 157 (157)
||++|+|
T Consensus 160 Sa~~g~g 166 (212)
T 2j0v_A 160 SSKTQQN 166 (212)
T ss_dssp CTTTCTT
T ss_pred cCCCCCC
Confidence 9999986
No 52
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=1.3e-32 Score=184.80 Aligned_cols=142 Identities=29% Similarity=0.445 Sum_probs=127.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+++||++|++++..++..+++.+|++|+|||++++.
T Consensus 11 ~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 90 (186)
T 1mh1_A 11 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPA 90 (186)
T ss_dssp ECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHH
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChh
Confidence 69999999999999999999888889988878778888999999999999999999999999999999999999999999
Q ss_pred hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-c
Q psy1873 81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWKA-G 146 (157)
Q Consensus 81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~ 146 (157)
+++.+. .|+..+..... . .|+++|+||+|+.+. +.+..+++..+++.+++ +
T Consensus 91 s~~~~~~~~~~~~~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 155 (186)
T 1mh1_A 91 SFENVRAKWYPEVRHHCP--N-------------TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 155 (186)
T ss_dssp HHHHHHHTHHHHHHHHST--T-------------SCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred hHHHHHHHHHHHHHHhCC--C-------------CCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcE
Confidence 999997 67777765533 2 999999999998653 56788889999999997 9
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
++++||++|+|
T Consensus 156 ~~~~Sa~~g~g 166 (186)
T 1mh1_A 156 YLECSALTQRG 166 (186)
T ss_dssp EEECCTTTCTT
T ss_pred EEEecCCCccC
Confidence 99999999986
No 53
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.8e-33 Score=189.69 Aligned_cols=143 Identities=29% Similarity=0.466 Sum_probs=119.1
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus 31 ~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 110 (200)
T 2o52_A 31 IGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSR 110 (200)
T ss_dssp EESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCH
T ss_pred ECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCH
Confidence 69999999999999999998878888888554 67778888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+....... +|++||+||+|+...+.+...++..+++..+++++++||++|+|
T Consensus 111 ~s~~~~~~~~~~~~~~~~~~--------------~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g 174 (200)
T 2o52_A 111 ETYNSLAAWLTDARTLASPN--------------IVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGEN 174 (200)
T ss_dssp HHHHTHHHHHHHHHHHTCTT--------------CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred HHHHHHHHHHHHHHHhcCCC--------------CcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 99999999998887765432 99999999999987778888999999999999999999999986
No 54
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-33 Score=191.38 Aligned_cols=143 Identities=34% Similarity=0.528 Sum_probs=129.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++|+|||++++
T Consensus 29 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 108 (191)
T 3dz8_A 29 IGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE 108 (191)
T ss_dssp EESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCH
T ss_pred ECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCH
Confidence 69999999999999999998888888887554 67777888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+....... +|++||+||+|+.+.+.+..++++.+++.++++++++||++|+|
T Consensus 109 ~s~~~~~~~~~~i~~~~~~~--------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 172 (191)
T 3dz8_A 109 ESFNAVQDWATQIKTYSWDN--------------AQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENIS 172 (191)
T ss_dssp HHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred HHHHHHHHHHHHHHHhcCCC--------------CCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 99999999998887754332 99999999999988888999999999999999999999999986
No 55
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.4e-32 Score=184.09 Aligned_cols=143 Identities=33% Similarity=0.479 Sum_probs=127.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus 21 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~ 100 (195)
T 1x3s_A 21 IGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRR 100 (195)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCH
T ss_pred ECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCH
Confidence 69999999999999999998888888888555 67778889999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+........ +|+++|+||+|+. .+.+..+++..+++.++++++++||++|+|
T Consensus 101 ~s~~~~~~~~~~i~~~~~~~~-------------~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (195)
T 1x3s_A 101 DTFVKLDNWLNELETYCTRND-------------IVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDG 164 (195)
T ss_dssp HHHHTHHHHHHHHTTCCSCSC-------------CEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred HHHHHHHHHHHHHHHhcCcCC-------------CcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCC
Confidence 999999999888866543223 9999999999994 466778889999999999999999999986
No 56
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=8.5e-32 Score=181.75 Aligned_cols=143 Identities=38% Similarity=0.630 Sum_probs=118.8
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|.+..+...+.+++..+.+.+||++|++++..++..+++.++++++|||++++.
T Consensus 27 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 106 (190)
T 3con_A 27 VGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSK 106 (190)
T ss_dssp ECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHH
T ss_pred ECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHH
Confidence 69999999999999999988888888888777778888999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+++.+..|+..+........ +|+++|+||+|+.. +.+..+++..+++.++++++++||++|+|
T Consensus 107 s~~~~~~~~~~i~~~~~~~~-------------~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 169 (190)
T 3con_A 107 SFADINLYREQIKRVKDSDD-------------VPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQG 169 (190)
T ss_dssp HHHHHHHHHHHHHHHHTCSC-------------CCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTT
T ss_pred HHHHHHHHHHHHHHHhCCCC-------------CeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 99999999988877665333 99999999999865 56778889999999999999999999986
No 57
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=8.8e-33 Score=189.25 Aligned_cols=141 Identities=24% Similarity=0.429 Sum_probs=124.5
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|+++|..++..+++.+|++|+|||+++++
T Consensus 34 vG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~ 113 (205)
T 1gwn_A 34 VGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPE 113 (205)
T ss_dssp EESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHH
Confidence 69999999999999999999888889988777777788888899999999999999999999999999999999999999
Q ss_pred hHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC------------CceecHHHHHHHHHHhC-Cc
Q psy1873 81 SFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM------------ERMISYDEGKRLAESWK-AG 146 (157)
Q Consensus 81 s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~ 146 (157)
+|+.+ ..|+..+..... . .|++|||||+|+.+ .+.+..+++..+++.++ ++
T Consensus 114 s~~~~~~~~~~~i~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 178 (205)
T 1gwn_A 114 TLDSVLKKWKGEIQEFCP--N-------------TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 178 (205)
T ss_dssp HHHHHHHTHHHHHHHHCT--T-------------CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHCC--C-------------CCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCE
Confidence 99999 678777765432 2 99999999999964 25688889999999988 69
Q ss_pred EEEeccc-cCC
Q psy1873 147 FVEASAK-QDD 156 (157)
Q Consensus 147 ~~e~Sa~-~~~ 156 (157)
|++|||+ +|+
T Consensus 179 ~~e~SAk~~~~ 189 (205)
T 1gwn_A 179 YIECSALQSEN 189 (205)
T ss_dssp EEECCTTTCHH
T ss_pred EEEeeeccCCc
Confidence 9999999 554
No 58
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=5.5e-32 Score=180.50 Aligned_cols=146 Identities=25% Similarity=0.373 Sum_probs=124.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++++|||++++
T Consensus 13 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 92 (177)
T 1wms_A 13 LGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDS 92 (177)
T ss_dssp ECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCH
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCH
Confidence 69999999999999999998888888888655 67778899889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-HhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE-SWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+........ ...+|+++|+||+|+. .+.+..+++..+++ ..+++++++||++|+|
T Consensus 93 ~s~~~~~~~~~~~~~~~~~~~----------~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (177)
T 1wms_A 93 QSFQNLSNWKKEFIYYADVKE----------PESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATN 160 (177)
T ss_dssp HHHHTHHHHHHHHHHHHTCSC----------TTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTT
T ss_pred HHHHHHHHHHHHHHHHccccc----------cCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCC
Confidence 999999999999887654210 1238999999999996 56778888999988 5668999999999986
No 59
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.8e-32 Score=181.72 Aligned_cols=145 Identities=37% Similarity=0.641 Sum_probs=129.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.++++..+...+..++..+.+.+||++|++++..++..+++.+|++++|||++++.
T Consensus 9 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 88 (172)
T 2erx_A 9 FGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQ 88 (172)
T ss_dssp ECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHH
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHH
Confidence 69999999999999999988878888888777777788888899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+++.+..|+..+...... ....|+++|+||+|+.+.+.+...++..++...+++++++||++|+|
T Consensus 89 ~~~~~~~~~~~i~~~~~~------------~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 153 (172)
T 2erx_A 89 SLEELKPIYEQICEIKGD------------VESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHN 153 (172)
T ss_dssp HHHTTHHHHHHHHHHHC---------------CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred HHHHHHHHHHHHHHHhCC------------CCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcC
Confidence 999999998888776532 11289999999999987778888889999999999999999999986
No 60
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=4.4e-32 Score=183.99 Aligned_cols=143 Identities=28% Similarity=0.387 Sum_probs=116.7
Q ss_pred CCCCCCChhhhHhhhhccc--ccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCcc-CcCchhhhccCCCEEEEEEEC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ--FVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDE-YSIFPAQYSMDIHGYVLVYSI 76 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~--~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~~ilv~d~ 76 (157)
||++|||||||+++|++.. +...+.+ ++ +.+...+.+++..+.+.+||++|++. +..+...+++.++++++|||+
T Consensus 12 vG~~~vGKSsL~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv 90 (192)
T 2cjw_A 12 IGEQGVGKSTLANIFAGVHDSMDSDXEV-LGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSI 90 (192)
T ss_dssp ECSTTSSHHHHHHHHHHHSCCC----GG-GCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEET
T ss_pred ECCCCCCHHHHHHHHhcCcCCcCccccc-cceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEEC
Confidence 6999999999999999643 3444433 44 44577788999999999999999876 566788889999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCC
Q psy1873 77 TSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156 (157)
Q Consensus 77 ~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 156 (157)
+++++|+.+..|+..+........ +|+++|+||+|+...+.+..+++..++..++++|+||||++|+
T Consensus 91 ~~~~s~~~~~~~~~~l~~~~~~~~-------------~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~ 157 (192)
T 2cjw_A 91 TDRASFEKASELRIQLRRARQTED-------------IPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQH 157 (192)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTTSC-------------CCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCC-------------CeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCC
Confidence 999999999999888776543223 8999999999997777888888999999999999999999998
Q ss_pred C
Q psy1873 157 Y 157 (157)
Q Consensus 157 ~ 157 (157)
|
T Consensus 158 ~ 158 (192)
T 2cjw_A 158 N 158 (192)
T ss_dssp S
T ss_pred C
Confidence 6
No 61
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=189.52 Aligned_cols=142 Identities=32% Similarity=0.565 Sum_probs=105.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++++|++|+|||++++.
T Consensus 40 vG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 119 (214)
T 2j1l_A 40 VGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPN 119 (214)
T ss_dssp EECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEEEETTCHH
T ss_pred ECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHH
Confidence 69999999999999999998888888888777778888999999999999999999999999999999999999999999
Q ss_pred hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHhCC-c
Q psy1873 81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER------------MISYDEGKRLAESWKA-G 146 (157)
Q Consensus 81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~ 146 (157)
+++.+. .|+..+..... . +|++||+||+|+...+ .+..+++..+++.+++ +
T Consensus 120 s~~~~~~~~~~~~~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 184 (214)
T 2j1l_A 120 SFDNIFNRWYPEVNHFCK--K-------------VPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVA 184 (214)
T ss_dssp HHHHHHHTHHHHHHHHCS--S-------------CCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCE
Confidence 999996 67777765432 2 8999999999997643 6778889999999998 9
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
++++||++|+|
T Consensus 185 ~~~~SA~~g~g 195 (214)
T 2j1l_A 185 YLECSARLHDN 195 (214)
T ss_dssp EEECBTTTTBS
T ss_pred EEEecCCCCCC
Confidence 99999999986
No 62
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=8.7e-33 Score=187.26 Aligned_cols=143 Identities=31% Similarity=0.513 Sum_probs=120.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus 32 vG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~ 111 (192)
T 2il1_A 32 IGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKK 111 (192)
T ss_dssp ECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCH
T ss_pred ECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCH
Confidence 69999999999999999988877888887554 67778888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh-CCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESW-KAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+....... .|++||+||+|+.+.+.+..++++.+++.. +++++++||++|+|
T Consensus 112 ~s~~~~~~~~~~i~~~~~~~--------------~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g 176 (192)
T 2il1_A 112 ETFDDLPKWMKMIDKYASED--------------AELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFN 176 (192)
T ss_dssp HHHHTHHHHHHHHHHHSCTT--------------CEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBS
T ss_pred HHHHHHHHHHHHHHHhcCCC--------------CcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCC
Confidence 99999999988776554322 999999999999877788888999999885 78999999999986
No 63
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=6.6e-32 Score=177.80 Aligned_cols=143 Identities=37% Similarity=0.608 Sum_probs=129.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++++++.+...+.++.+..+...+..++..+.+.+||++|++++..++..++..+|++++|||++++.
T Consensus 9 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 88 (166)
T 2ce2_X 9 VGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88 (166)
T ss_dssp EESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHH
T ss_pred ECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHH
Confidence 59999999999999999988888888888777777888898999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+++.+..|+..+........ .|+++|+||+|+.+ +.+..+++..+++.++++++++||++|+|
T Consensus 89 ~~~~~~~~~~~i~~~~~~~~-------------~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 151 (166)
T 2ce2_X 89 SFEDIHQYREQIKRVKDSDD-------------VPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQG 151 (166)
T ss_dssp HHHHHHHHHHHHHHHHTCSC-------------CCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTT
T ss_pred HHHHHHHHHHHHHHhcCCCC-------------CcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCC
Confidence 99999999999887765433 99999999999866 56778889999999999999999999986
No 64
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=4.2e-32 Score=185.09 Aligned_cols=142 Identities=32% Similarity=0.520 Sum_probs=125.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++.+|++|+|||+++++
T Consensus 31 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 110 (201)
T 2gco_A 31 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPD 110 (201)
T ss_dssp EESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHH
T ss_pred ECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHH
Confidence 69999999999999999999888889988777667788999999999999999999999999999999999999999999
Q ss_pred hHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-c
Q psy1873 81 SFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWKA-G 146 (157)
Q Consensus 81 s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~ 146 (157)
+++.+ ..|+..+..... . .|+++|+||+|+.+. +.+..+++..+++..++ +
T Consensus 111 s~~~~~~~~~~~~~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 175 (201)
T 2gco_A 111 SLENIPEKWTPEVKHFCP--N-------------VPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFG 175 (201)
T ss_dssp HHHHHHHTHHHHHHHHST--T-------------CCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcE
Confidence 99999 566666655432 2 999999999999764 45788889999999998 9
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
++++||++|+|
T Consensus 176 ~~~~SA~~g~g 186 (201)
T 2gco_A 176 YLECSAKTKEG 186 (201)
T ss_dssp EEECCTTTCTT
T ss_pred EEEeeCCCCCC
Confidence 99999999986
No 65
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1e-32 Score=187.85 Aligned_cols=143 Identities=32% Similarity=0.487 Sum_probs=118.8
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus 34 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~ 113 (199)
T 2p5s_A 34 AGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCE 113 (199)
T ss_dssp ESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred ECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCCh
Confidence 69999999999999999988877788888554 67778899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC------CCceecHHHHHHHHHHhCCcEEEeccc
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH------MERMISYDEGKRLAESWKAGFVEASAK 153 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 153 (157)
.+++.+..|+..+....... +|++||+||+|+. ..+.+..+++..+++..+++++++||+
T Consensus 114 ~s~~~~~~~~~~i~~~~~~~--------------~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~ 179 (199)
T 2p5s_A 114 KSFLNIREWVDMIEDAAHET--------------VPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAK 179 (199)
T ss_dssp HHHHTHHHHHHHHHHHC-----------------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTT
T ss_pred HHHHHHHHHHHHHHHhcCCC--------------CCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCC
Confidence 99999999988876654322 9999999999985 456788889999999999999999999
Q ss_pred cCCC
Q psy1873 154 QDDY 157 (157)
Q Consensus 154 ~~~~ 157 (157)
+|+|
T Consensus 180 ~g~g 183 (199)
T 2p5s_A 180 DGSN 183 (199)
T ss_dssp TCTT
T ss_pred CCCC
Confidence 9986
No 66
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=3.9e-32 Score=183.45 Aligned_cols=144 Identities=29% Similarity=0.447 Sum_probs=127.6
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEE--EEEEECCe---------EEEEEEEeCCCCccCcCchhhhccCCCE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFV--KTTRMNNQ---------DYDLKLVDTAGQDEYSIFPAQYSMDIHG 69 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~---------~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 69 (157)
+|++|||||||+++|+++.+...+.+|++..+. ..+..++. .+.+.+||++|++++..++..+++.+|+
T Consensus 17 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 96 (195)
T 3bc1_A 17 LGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMG 96 (195)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSE
T ss_pred ECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCE
Confidence 699999999999999999988888888886553 45555655 7899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEE
Q psy1873 70 YVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVE 149 (157)
Q Consensus 70 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e 149 (157)
+|+|||++++.+++.+..|+..+........ +|+++|+||+|+.+.+.+..+++..++..+++++++
T Consensus 97 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (195)
T 3bc1_A 97 FLLLFDLTNEQSFLNVRNWISQLQMHAYSEN-------------PDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFE 163 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSSSSS-------------CCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCC-------------CCEEEEEECcccccccccCHHHHHHHHHHcCCCEEE
Confidence 9999999999999999999998887764333 999999999999877788889999999999999999
Q ss_pred eccccCCC
Q psy1873 150 ASAKQDDY 157 (157)
Q Consensus 150 ~Sa~~~~~ 157 (157)
+||++|+|
T Consensus 164 ~Sa~~~~~ 171 (195)
T 3bc1_A 164 TSAANGTN 171 (195)
T ss_dssp CCTTTCTT
T ss_pred EECCCCCC
Confidence 99999986
No 67
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=8.4e-32 Score=184.65 Aligned_cols=142 Identities=34% Similarity=0.586 Sum_probs=127.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|++..+...+.++++..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++|+|||++++
T Consensus 26 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~ 105 (213)
T 3cph_A 26 IGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDE 105 (213)
T ss_dssp ECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCH
T ss_pred ECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCH
Confidence 69999999999999999988878888888555 67778889889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+....... +|+++|+||+|+ ..+.+..+++..++..++++++++||++|+|
T Consensus 106 ~s~~~~~~~~~~i~~~~~~~--------------~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 168 (213)
T 3cph_A 106 RTFTNIKQWFKTVNEHANDE--------------AQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDN 168 (213)
T ss_dssp HHHHTHHHHHHHHHHHTTTC--------------SEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBS
T ss_pred HHHHHHHHHHHHHHHhcCCC--------------CCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 99999999998887765432 999999999999 5567778889999999999999999999986
No 68
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=2.7e-33 Score=187.64 Aligned_cols=142 Identities=31% Similarity=0.480 Sum_probs=109.1
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++++|++++|||++++.
T Consensus 14 ~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 93 (182)
T 3bwd_D 14 VGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKA 93 (182)
T ss_dssp ECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHH
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHH
Confidence 69999999999999999988888888888666555667777888999999999999999999999999999999999999
Q ss_pred hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce----------ecHHHHHHHHHHhCC-cEE
Q psy1873 81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM----------ISYDEGKRLAESWKA-GFV 148 (157)
Q Consensus 81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~ 148 (157)
+++.+. .|+..+..... . .|+++|+||+|+.+.+. +..+++..+++.+++ +++
T Consensus 94 s~~~~~~~~~~~~~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 158 (182)
T 3bwd_D 94 SYENVSKKWIPELKHYAP--G-------------VPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYI 158 (182)
T ss_dssp HHHHHHHTHHHHHHHHCT--T-------------CCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEE
Confidence 999997 67777765532 2 99999999999866544 477889999999997 999
Q ss_pred EeccccCCC
Q psy1873 149 EASAKQDDY 157 (157)
Q Consensus 149 e~Sa~~~~~ 157 (157)
++||++|+|
T Consensus 159 ~~Sa~~~~g 167 (182)
T 3bwd_D 159 ECSSKSQEN 167 (182)
T ss_dssp ECCTTTCTT
T ss_pred EEECCCCCC
Confidence 999999986
No 69
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=2.7e-32 Score=186.59 Aligned_cols=142 Identities=28% Similarity=0.457 Sum_probs=124.8
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++.
T Consensus 36 vG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 115 (204)
T 4gzl_A 36 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPA 115 (204)
T ss_dssp EESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHH
T ss_pred ECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 69999999999999999999888889988888888888999999999999999999999999999999999999999999
Q ss_pred hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce------------ecHHHHHHHHHHhCC-c
Q psy1873 81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM------------ISYDEGKRLAESWKA-G 146 (157)
Q Consensus 81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~-~ 146 (157)
+++.+. .|+..+..... . .|+++|+||+|+...+. +...++..+++..++ +
T Consensus 116 s~~~~~~~~~~~~~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 180 (204)
T 4gzl_A 116 SFENVRAKWYPEVRHHCP--N-------------TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 180 (204)
T ss_dssp HHHHHHHTHHHHHHHHCS--S-------------CCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcE
Confidence 999997 67766665542 2 99999999999865443 778889999999997 6
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
++++||++|+|
T Consensus 181 ~~~~SA~~g~g 191 (204)
T 4gzl_A 181 YLECSALTQRG 191 (204)
T ss_dssp EEECCTTTCTT
T ss_pred EEEeeCCCCCC
Confidence 99999999987
No 70
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1e-31 Score=183.99 Aligned_cols=142 Identities=30% Similarity=0.486 Sum_probs=119.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++.+|++|+|||+++++
T Consensus 31 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 110 (207)
T 2fv8_A 31 VGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPD 110 (207)
T ss_dssp EECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHH
T ss_pred ECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHH
Confidence 69999999999999999998888888888777666788999999999999999999999999999999999999999999
Q ss_pred hHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-c
Q psy1873 81 SFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWKA-G 146 (157)
Q Consensus 81 s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~ 146 (157)
+++.+ ..|+..+..... . .|+++|+||+|+... +.+..+++..++...++ +
T Consensus 111 s~~~~~~~~~~~~~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 175 (207)
T 2fv8_A 111 SLENIPEKWVPEVKHFCP--N-------------VPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYD 175 (207)
T ss_dssp HHHHHHHTHHHHHHHHST--T-------------CCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHHHhCC--C-------------CCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCE
Confidence 99999 567666655432 2 999999999999654 45778889999999998 9
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
++++||++|+|
T Consensus 176 ~~~~SA~~g~g 186 (207)
T 2fv8_A 176 YLECSAKTKEG 186 (207)
T ss_dssp EEECCTTTCTT
T ss_pred EEEeeCCCCCC
Confidence 99999999986
No 71
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=1.4e-32 Score=187.78 Aligned_cols=146 Identities=27% Similarity=0.365 Sum_probs=92.7
Q ss_pred CCCCCCChhhhHhhhhcc--cccccccCCcc-ceEEEEEEECCe--EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDG--QFVDSYDPTIE-NTFVKTTRMNNQ--DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYS 75 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~--~~~~~~~~t~~-~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d 75 (157)
+|++|||||||+++|+++ .+...+.+|++ +.+...+.+++. .+.+.+||++|++++..++..+++.+|++|+|||
T Consensus 26 ~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 105 (208)
T 2yc2_C 26 VGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFD 105 (208)
T ss_dssp C----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEE
T ss_pred ECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEE
Confidence 699999999999999998 77778888887 444677788877 8899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC-CceecHHHHHHHHHHhCCcEEEecccc
Q psy1873 76 ITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM-ERMISYDEGKRLAESWKAGFVEASAKQ 154 (157)
Q Consensus 76 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 154 (157)
++++.+++.+..|+..+....... ...+|++||+||+|+.. .+.+..+++..+++.++++++++||++
T Consensus 106 ~~~~~s~~~~~~~~~~i~~~~~~~-----------~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 174 (208)
T 2yc2_C 106 VSSMESFESCKAWFELLKSARPDR-----------ERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANP 174 (208)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCSCT-----------TSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC--
T ss_pred CCCHHHHHHHHHHHHHHHHhhccc-----------ccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCC
Confidence 999999999999999988765410 01299999999999987 778888999999999999999999999
Q ss_pred -CCC
Q psy1873 155 -DDY 157 (157)
Q Consensus 155 -~~~ 157 (157)
|+|
T Consensus 175 ~~~g 178 (208)
T 2yc2_C 175 PGKD 178 (208)
T ss_dssp ----
T ss_pred CCcC
Confidence 875
No 72
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=2.3e-31 Score=180.89 Aligned_cols=140 Identities=24% Similarity=0.371 Sum_probs=123.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeE-------------------------------------
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQD------------------------------------- 42 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~------------------------------------- 42 (157)
+|++|||||||+++|++..+...+.+|++..+ ...+.+++..
T Consensus 13 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (208)
T 3clv_A 13 LGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCN 92 (208)
T ss_dssp ECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CCCTTTCE
T ss_pred ECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccccCccce
Confidence 69999999999999999999888888888555 5556666654
Q ss_pred EEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeC
Q psy1873 43 YDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122 (157)
Q Consensus 43 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK 122 (157)
+.+.+||++|++.+..++..+++.+|++|+|||++++.+++.+..|+..+..... .|+++|+||
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~----------------~piilv~NK 156 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN----------------YIIILVANK 156 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----------------CEEEEEEEC
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----------------CcEEEEEEC
Confidence 8899999999999999999999999999999999999999999999988876542 899999999
Q ss_pred CCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 123 KDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 123 ~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+| ...+.+..+++..+++.++++++++||++|+|
T Consensus 157 ~D-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 190 (208)
T 3clv_A 157 ID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTN 190 (208)
T ss_dssp TT-CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred CC-cccccCCHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 99 55677888999999999999999999999986
No 73
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.98 E-value=3e-31 Score=181.18 Aligned_cols=146 Identities=26% Similarity=0.427 Sum_probs=126.1
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|++..+...+.++++..+ ...+.+++..+.+.+||++|++.+..++..+++++|++|+|||++++
T Consensus 14 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 93 (207)
T 1vg8_A 14 LGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAP 93 (207)
T ss_dssp ECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCH
T ss_pred ECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCH
Confidence 69999999999999999998888888887544 66777888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-HhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE-SWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+........ ....|+++|+||+|+. .+.+..+++..++. ..+++++++||++|+|
T Consensus 94 ~s~~~~~~~~~~~~~~~~~~~----------~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 161 (207)
T 1vg8_A 94 NTFKTLDSWRDEFLIQASPRD----------PENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAIN 161 (207)
T ss_dssp HHHHTHHHHHHHHHHHHCCSS----------GGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBS
T ss_pred HHHHHHHHHHHHHHHhccccc----------CCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCC
Confidence 999999999998887764210 1128999999999997 55677788888887 6678999999999986
No 74
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.98 E-value=1.5e-32 Score=189.21 Aligned_cols=144 Identities=28% Similarity=0.448 Sum_probs=125.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCe----------EEEEEEEeCCCCccCcCchhhhccCCCE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQ----------DYDLKLVDTAGQDEYSIFPAQYSMDIHG 69 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~----------~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 69 (157)
+|++|||||||+++|+++.+...+.+|++..+ ...+.+++. .+.+.+||++|++++..++..+++.+|+
T Consensus 31 vG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 110 (217)
T 2f7s_A 31 LGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMG 110 (217)
T ss_dssp ESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCE
T ss_pred ECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCE
Confidence 69999999999999999988877888887555 556667665 7889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEE
Q psy1873 70 YVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVE 149 (157)
Q Consensus 70 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e 149 (157)
+|+|||++++.+++.+..|+..+...... ..+|++||+||+|+...+.+..+++..+++.+++++++
T Consensus 111 iilV~D~~~~~s~~~~~~~l~~i~~~~~~-------------~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 177 (217)
T 2f7s_A 111 FLLMFDLTSQQSFLNVRNWMSQLQANAYC-------------ENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFE 177 (217)
T ss_dssp EEEEEETTCHHHHHHHHHHHHTCCCCCTT-------------TCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCc-------------CCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEE
Confidence 99999999999999999888776544321 22999999999999877788889999999999999999
Q ss_pred eccccCCC
Q psy1873 150 ASAKQDDY 157 (157)
Q Consensus 150 ~Sa~~~~~ 157 (157)
+||++|+|
T Consensus 178 ~Sa~~g~g 185 (217)
T 2f7s_A 178 TSAATGQN 185 (217)
T ss_dssp EBTTTTBT
T ss_pred EECCCCCC
Confidence 99999986
No 75
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=1.7e-31 Score=181.30 Aligned_cols=144 Identities=34% Similarity=0.612 Sum_probs=127.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|++..+...+..++..+.+.+||++|++++..++..+++.+|++++|||++++.
T Consensus 14 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 93 (199)
T 2gf0_A 14 FGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQ 93 (199)
T ss_dssp EECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHH
T ss_pred ECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHH
Confidence 69999999999999999998888888888777777788888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+++.+..|+..+....... ...|+++|+||+|+.+ +.+...++..++..++++++++||++|+|
T Consensus 94 s~~~~~~~~~~i~~~~~~~------------~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 157 (199)
T 2gf0_A 94 SLEELGPIYKLIVQIKGSV------------EDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYN 157 (199)
T ss_dssp HHHTTHHHHHHHHHHHSCG------------GGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred HHHHHHHHHHHHHHHhcCC------------CCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCC
Confidence 9999998888777654320 1289999999999965 56778889999999999999999999986
No 76
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.98 E-value=1.4e-31 Score=179.08 Aligned_cols=147 Identities=27% Similarity=0.414 Sum_probs=112.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEEC-CeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMN-NQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS 78 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~ 78 (157)
+|++|||||||+++|+++.+...+.++++..+ ...+.++ +..+.+.+||++|++.+..++..+++.+|++|+|||+++
T Consensus 14 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 93 (182)
T 1ky3_A 14 LGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTN 93 (182)
T ss_dssp ECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTC
T ss_pred ECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCC
Confidence 69999999999999999998888888887443 5666666 567889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC-CceecHHHHHHHHH-HhCCcEEEeccccCC
Q psy1873 79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM-ERMISYDEGKRLAE-SWKAGFVEASAKQDD 156 (157)
Q Consensus 79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~ 156 (157)
+.+++.+..|+..+........ ...+|+++|+||+|+.. .+.+..+++..+++ ..+++++++||++|+
T Consensus 94 ~~s~~~~~~~~~~~~~~~~~~~----------~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (182)
T 1ky3_A 94 ASSFENIKSWRDEFLVHANVNS----------PETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163 (182)
T ss_dssp HHHHHTHHHHHHHHHHHHCCSC----------TTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred hHHHHHHHHHHHHHHHHhcccC----------cCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 9999999999999887664210 12389999999999953 45677888999988 456899999999998
Q ss_pred C
Q psy1873 157 Y 157 (157)
Q Consensus 157 ~ 157 (157)
|
T Consensus 164 g 164 (182)
T 1ky3_A 164 N 164 (182)
T ss_dssp S
T ss_pred C
Confidence 6
No 77
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.98 E-value=1.7e-31 Score=184.04 Aligned_cols=143 Identities=23% Similarity=0.333 Sum_probs=122.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEE-CCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRM-NNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS 78 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~ 78 (157)
+|++|||||||+++|+++.+...+.+|.+..+ ...... ++..+.+.+||++|++.+..++..++..+|++|+|||+++
T Consensus 17 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 96 (218)
T 4djt_A 17 IGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTS 96 (218)
T ss_dssp ECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTC
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCC
Confidence 69999999999999999888888888887555 333333 3344889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 79 HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 79 ~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+.+++.+..|+..+....... .|+++|+||+|+.+.+.+...++..++...+++++++||++|+|
T Consensus 97 ~~s~~~~~~~~~~~~~~~~~~--------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 161 (218)
T 4djt_A 97 RITCQNLARWVKEFQAVVGNE--------------APIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHN 161 (218)
T ss_dssp HHHHHTHHHHHHHHHHHHCSS--------------SCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBT
T ss_pred HHHHHHHHHHHHHHHHhcCCC--------------CCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 999999999999988776543 89999999999988778888999999999999999999999986
No 78
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=2.4e-33 Score=190.90 Aligned_cols=143 Identities=32% Similarity=0.557 Sum_probs=118.1
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+...+.++++..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus 39 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 118 (199)
T 3l0i_B 39 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQ 118 (199)
T ss_dssp ECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCS
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCH
Confidence 69999999999999999988877778877544 67778899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+....... +|++||+||+|+.+.+.+...++..++..++++++++||++|+|
T Consensus 119 ~s~~~~~~~~~~i~~~~~~~--------------~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~g 182 (199)
T 3l0i_B 119 ESFNNVKQWLQEIDRYASEN--------------VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 182 (199)
T ss_dssp HHHHHHHHHHHHHHSCC-CC--------------SEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HH
T ss_pred HHHHHHHHHHHHHHHhccCC--------------CCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 99999999988886554322 99999999999987777777788999999999999999999864
No 79
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=2.5e-31 Score=183.67 Aligned_cols=140 Identities=21% Similarity=0.348 Sum_probs=123.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+||++|++.+..++..+++++|++|+|||++++
T Consensus 21 ~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 100 (221)
T 3gj0_A 21 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSR 100 (221)
T ss_dssp EECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCH
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCH
Confidence 69999999999999998888888888888554 66777888999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+...... +|+++|+||+|+.+.... .+...+++..+++++++||++|+|
T Consensus 101 ~s~~~~~~~~~~~~~~~~~---------------~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~g 161 (221)
T 3gj0_A 101 VTYKNVPNWHRDLVRVCEN---------------IPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYN 161 (221)
T ss_dssp HHHHTHHHHHHHHHHHSTT---------------CCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBT
T ss_pred HHHHHHHHHHHHHHHhCCC---------------CCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCC
Confidence 9999999999999876532 899999999999654332 357778888999999999999986
No 80
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=7.1e-31 Score=178.78 Aligned_cols=138 Identities=20% Similarity=0.223 Sum_probs=107.8
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|.++.+. .+.+|++.. ...+.+++ +.+.+||++|++++..++..+++++|++++|||+++++
T Consensus 31 vG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~ 106 (198)
T 1f6b_A 31 LGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHE 106 (198)
T ss_dssp EEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGG
T ss_pred ECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHH
Confidence 699999999999999988764 456777654 34566776 77899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-----------------h
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES-----------------W 143 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~ 143 (157)
+|+.+..|+..++....... +|+++|+||+|+.. .++.+++..++.. .
T Consensus 107 s~~~~~~~~~~~~~~~~~~~-------------~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1f6b_A 107 RLLESKEELDSLMTDETIAN-------------VPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNAR 171 (198)
T ss_dssp GHHHHHHHHHHHHTCGGGTT-------------SCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSC
T ss_pred HHHHHHHHHHHHHhCcccCC-------------CcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCc
Confidence 99999999999886543333 99999999999965 5667777776653 3
Q ss_pred CCcEEEeccccCCC
Q psy1873 144 KAGFVEASAKQDDY 157 (157)
Q Consensus 144 ~~~~~e~Sa~~~~~ 157 (157)
++++++|||++|+|
T Consensus 172 ~~~~~~~SA~~g~g 185 (198)
T 1f6b_A 172 PLEVFMCSVLKRQG 185 (198)
T ss_dssp CEEEEECBTTTTBS
T ss_pred eEEEEEEECCCCCC
Confidence 45899999999986
No 81
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=5.6e-31 Score=178.71 Aligned_cols=148 Identities=15% Similarity=0.145 Sum_probs=110.6
Q ss_pred CCCCCCChhhhHhhhhcccccc-cccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVD-SYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++.+.. .+.+|++..+ ..+ +...+.+.+||++|++++..++..+++.+|++|+|||++++
T Consensus 23 ~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~-~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~ 99 (199)
T 4bas_A 23 CGLDNSGKTTIINQVKPAQSSSKHITATVGYNV-ETF--EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDH 99 (199)
T ss_dssp ECCTTSCHHHHHHHHSCCC----CCCCCSSEEE-EEE--EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCG
T ss_pred ECCCCCCHHHHHHHHhcCCCcccccccccceeE-EEE--EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcH
Confidence 6999999999999999999987 7888888333 223 34557899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce---ecHHHHHH-HHHHhCCcEEEeccccC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM---ISYDEGKR-LAESWKAGFVEASAKQD 155 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~---~~~~~~~~-~~~~~~~~~~e~Sa~~~ 155 (157)
++|+.+..|+..++......... .....+|++||+||+|+..... +....... +++..++++++|||++|
T Consensus 100 ~s~~~~~~~~~~~~~~~~~~~~~------~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 173 (199)
T 4bas_A 100 LRLCVVKSEIQAMLKHEDIRREL------PGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKG 173 (199)
T ss_dssp GGHHHHHHHHHHHHTSHHHHSBC------TTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTT
T ss_pred HHHHHHHHHHHHHHhChhhhhcc------cccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCc
Confidence 99999999999987764321000 0001299999999999976522 21111111 12446789999999999
Q ss_pred CC
Q psy1873 156 DY 157 (157)
Q Consensus 156 ~~ 157 (157)
+|
T Consensus 174 ~g 175 (199)
T 4bas_A 174 TG 175 (199)
T ss_dssp BT
T ss_pred cC
Confidence 86
No 82
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=3.2e-30 Score=174.47 Aligned_cols=138 Identities=19% Similarity=0.279 Sum_probs=114.7
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+. .+.+|++.. ...+.+++ +.+.+||++|++++..++..+++++|++|+|||+++++
T Consensus 29 vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 104 (190)
T 1m2o_B 29 LGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE 104 (190)
T ss_dssp EESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGG
T ss_pred ECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChH
Confidence 699999999999999988775 456777653 45566776 77899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH------------hCCcEE
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES------------WKAGFV 148 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~ 148 (157)
+|+.+..|+..++....... .|+++|+||+|+.+ .++.++...++.. .+++++
T Consensus 105 s~~~~~~~~~~~~~~~~~~~-------------~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T 1m2o_B 105 RFDEARVELDALFNIAELKD-------------VPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVF 169 (190)
T ss_dssp GHHHHHHHHHHHHTCGGGTT-------------CCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEE
T ss_pred HHHHHHHHHHHHHcchhhcC-------------CCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEE
Confidence 99999999999876543333 99999999999965 5566666665432 346899
Q ss_pred EeccccCCC
Q psy1873 149 EASAKQDDY 157 (157)
Q Consensus 149 e~Sa~~~~~ 157 (157)
+|||++|+|
T Consensus 170 ~~Sa~~g~g 178 (190)
T 1m2o_B 170 MCSVVMRNG 178 (190)
T ss_dssp ECBTTTTBS
T ss_pred EeECCcCCC
Confidence 999999986
No 83
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=3.6e-31 Score=179.20 Aligned_cols=139 Identities=17% Similarity=0.139 Sum_probs=111.4
Q ss_pred CCCCCCChhhhHhhhhcccccccc-----------cCCccceE-EEEE-EECCeEEEEEEEeCCCCccCcCchhhhccCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSY-----------DPTIENTF-VKTT-RMNNQDYDLKLVDTAGQDEYSIFPAQYSMDI 67 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~-----------~~t~~~~~-~~~~-~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 67 (157)
||++|||||||++.+ .+.+...+ .+|++..+ ...+ .+++..+.+++||++|++++..++..+++++
T Consensus 20 vG~~~~GKssL~~~l-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 98 (198)
T 3t1o_A 20 YGPGLSGKTTNLKWI-YSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGV 98 (198)
T ss_dssp ECSTTSSHHHHHHHH-HHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTC
T ss_pred ECCCCCCHHHHHHHH-HhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhcC
Confidence 699999999999554 45555443 34555433 2333 5667788999999999999999999999999
Q ss_pred CEEEEEEECC------ChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH
Q psy1873 68 HGYVLVYSIT------SHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE 141 (157)
Q Consensus 68 ~~~ilv~d~~------~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~ 141 (157)
|++|+|||++ +.++++.+..|+..+... ...+|++||+||+|+.+ .+..+++..+++
T Consensus 99 d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~---------------~~~~piilv~NK~Dl~~--~~~~~~~~~~~~ 161 (198)
T 3t1o_A 99 DGIVFVADSAPNRLRANAESMRNMRENLAEYGLT---------------LDDVPIVIQVNKRDLPD--ALPVEMVRAVVD 161 (198)
T ss_dssp CEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCC---------------TTSSCEEEEEECTTSTT--CCCHHHHHHHHC
T ss_pred CEEEEEEECCcchhhHhHHHHHHHHHHHHhhccc---------------cCCCCEEEEEEchhccc--ccCHHHHHHHHH
Confidence 9999999999 567788888887776211 12399999999999955 477889999999
Q ss_pred HhCC-cEEEeccccCCC
Q psy1873 142 SWKA-GFVEASAKQDDY 157 (157)
Q Consensus 142 ~~~~-~~~e~Sa~~~~~ 157 (157)
.+++ +++++||++|+|
T Consensus 162 ~~~~~~~~~~Sa~~~~g 178 (198)
T 3t1o_A 162 PEGKFPVLEAVATEGKG 178 (198)
T ss_dssp TTCCSCEEECBGGGTBT
T ss_pred hcCCceEEEEecCCCcC
Confidence 9999 999999999986
No 84
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=2.9e-31 Score=174.96 Aligned_cols=138 Identities=18% Similarity=0.215 Sum_probs=107.7
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+.. +.||++.. ...+.. ..+.+.+||++|++++..++..+++++|++++|||+++++
T Consensus 6 ~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~-~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 81 (164)
T 1r8s_A 6 VGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 81 (164)
T ss_dssp ECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC-EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGG
T ss_pred ECCCCCCHHHHHHHHHcCCcCc-ccCcCcee-EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 6999999999999999888764 56777732 333333 4477899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHH-----HHHHhCCcEEEeccccC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKR-----LAESWKAGFVEASAKQD 155 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~~ 155 (157)
+++.+..|+..++....... .|+++|+||+|+.+.. ...+... .++..+++++++||++|
T Consensus 82 s~~~~~~~~~~~~~~~~~~~-------------~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 146 (164)
T 1r8s_A 82 RVNEAREELMRMLAEDELRD-------------AVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSG 146 (164)
T ss_dssp GHHHHHHHHHHHHTCGGGTT-------------CEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTT
T ss_pred HHHHHHHHHHHHHhchhhcC-------------CeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCC
Confidence 99999999988876543323 9999999999996532 2222221 11223457999999999
Q ss_pred CC
Q psy1873 156 DY 157 (157)
Q Consensus 156 ~~ 157 (157)
+|
T Consensus 147 ~g 148 (164)
T 1r8s_A 147 DG 148 (164)
T ss_dssp BT
T ss_pred cC
Confidence 86
No 85
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.97 E-value=5.8e-30 Score=186.11 Aligned_cols=142 Identities=27% Similarity=0.444 Sum_probs=127.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++.+..++..+++.+|++|+|||++++.
T Consensus 161 ~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 240 (332)
T 2wkq_A 161 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPA 240 (332)
T ss_dssp EESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHH
T ss_pred ECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHH
Confidence 59999999999999999999888889998888888889999999999999999999999999999999999999999999
Q ss_pred hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC------------ceecHHHHHHHHHHhCC-c
Q psy1873 81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME------------RMISYDEGKRLAESWKA-G 146 (157)
Q Consensus 81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~ 146 (157)
+++.+. .|+..+..... . +|+++|+||+|+... +.+...++..+++..++ +
T Consensus 241 s~~~~~~~~~~~~~~~~~--~-------------~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 305 (332)
T 2wkq_A 241 SFHHVRAKWYPEVRHHCP--N-------------TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 305 (332)
T ss_dssp HHHHHHHTHHHHHHHHCT--T-------------SCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHHhhCC--C-------------CcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcE
Confidence 999997 67766665433 2 999999999998543 56888899999999997 9
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
+++|||++|+|
T Consensus 306 ~~~~Sa~~~~g 316 (332)
T 2wkq_A 306 YLECSALTQRG 316 (332)
T ss_dssp EEECCTTTCTT
T ss_pred EEEecCCCCcC
Confidence 99999999986
No 86
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=4.3e-29 Score=169.92 Aligned_cols=143 Identities=31% Similarity=0.479 Sum_probs=124.1
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
||++|||||||+++|++..+...+.+|++..+ ...+.+++..+.+.+||++|++++..++..+++.++++++|||+++.
T Consensus 11 vG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 90 (199)
T 2f9l_A 11 IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKH 90 (199)
T ss_dssp ESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCH
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCH
Confidence 69999999999999999988877788887554 67788999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+...... . .|+++++||+|+...+.+...++..++...++.++++||++++|
T Consensus 91 ~s~~~~~~~~~~~~~~~~~-~-------------~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~ 154 (199)
T 2f9l_A 91 LTYENVERWLKELRDHADS-N-------------IVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTN 154 (199)
T ss_dssp HHHHTHHHHHHHHHHHSCT-T-------------CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred HHHHHHHHHHHHHHHhcCC-C-------------CeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 9999998888777554322 2 89999999999987777888889999999999999999999876
No 87
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.94 E-value=1.9e-32 Score=187.06 Aligned_cols=142 Identities=29% Similarity=0.468 Sum_probs=123.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|++..+...+.+++..+.+.+||++|++++..++..+++++|++|+|||++++.
T Consensus 36 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~ 115 (204)
T 3th5_A 36 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPA 115 (204)
Confidence 69999999999999999998888888888777777778888889999999999999999999999999999999999999
Q ss_pred hHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc------------eecHHHHHHHHHHhCC-c
Q psy1873 81 SFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER------------MISYDEGKRLAESWKA-G 146 (157)
Q Consensus 81 s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~ 146 (157)
+++.+. .|+..+..... . +|+++|+||+|+.+.+ .+...++..+++.+++ +
T Consensus 116 s~~~~~~~~~~~l~~~~~--~-------------~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 180 (204)
T 3th5_A 116 SFENVRAKWYPEVRHHCP--N-------------TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 180 (204)
Confidence 999986 67666654432 2 9999999999996543 5667788889999998 9
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
++++||++|+|
T Consensus 181 ~~~vSA~~g~g 191 (204)
T 3th5_A 181 YLECSALTQRG 191 (204)
Confidence 99999999986
No 88
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=1e-30 Score=176.46 Aligned_cols=139 Identities=22% Similarity=0.300 Sum_probs=111.1
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+...+.+|++..+.. +.. ..+.+.+||++|++++..++..+++++|++|+|||+++++
T Consensus 28 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~ 104 (188)
T 1zd9_A 28 VGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK-ITK--GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQE 104 (188)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE-EEE--TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGG
T ss_pred ECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE-EEe--CCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHH
Confidence 6999999999999999999887888888865532 333 3577899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHH-----HHHhCCcEEEeccccC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRL-----AESWKAGFVEASAKQD 155 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~ 155 (157)
+++.+..|+..++....... .|+++|+||+|+.... ...+.... +...+++++++||++|
T Consensus 105 s~~~~~~~~~~~~~~~~~~~-------------~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 169 (188)
T 1zd9_A 105 KIEASKNELHNLLDKPQLQG-------------IPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEK 169 (188)
T ss_dssp GHHHHHHHHHHHHTCGGGTT-------------CCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred HHHHHHHHHHHHHhCcccCC-------------CCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCC
Confidence 99999999988876543223 9999999999996532 22222211 1123468999999999
Q ss_pred CC
Q psy1873 156 DY 157 (157)
Q Consensus 156 ~~ 157 (157)
+|
T Consensus 170 ~g 171 (188)
T 1zd9_A 170 DN 171 (188)
T ss_dssp TT
T ss_pred CC
Confidence 86
No 89
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=6.8e-30 Score=169.36 Aligned_cols=140 Identities=16% Similarity=0.216 Sum_probs=109.5
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+. .+.+|++.. ...+.++ ...+.+||++|++++..++..+++++|++++|||+++++
T Consensus 13 ~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 88 (171)
T 1upt_A 13 LGLDGAGKTTILYRLQVGEVV-TTIPTIGFN-VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRD 88 (171)
T ss_dssp ECSTTSSHHHHHHHHHHSSCC-CCCCCSSEE-EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCT
T ss_pred ECCCCCCHHHHHHHHhcCCCC-CcCCcCccc-eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHH
Confidence 699999999999999988875 356776633 3445555 467899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce---ecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM---ISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+++.+..|+..++....... .|+++|+||+|+.+... +.......++...+++++++||++|+|
T Consensus 89 s~~~~~~~~~~~~~~~~~~~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 155 (171)
T 1upt_A 89 RIGISKSELVAMLEEEELRK-------------AILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTG 155 (171)
T ss_dssp THHHHHHHHHHHHTCGGGTT-------------CEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTT
T ss_pred HHHHHHHHHHHHHhchhhCC-------------CEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcC
Confidence 99999999988876643223 99999999999965422 111111122334467899999999986
No 90
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.7e-29 Score=169.60 Aligned_cols=141 Identities=17% Similarity=0.219 Sum_probs=113.7
Q ss_pred CCCCCCChhhhHhhhhccc-ccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ-FVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|++|||||||+++|+++. +...+.+|++. ....+.+++ +.+.+||++|++++..++..+++++|++|+|||++++
T Consensus 27 ~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~-~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~ 103 (190)
T 2h57_A 27 LGLDNSGKTTIINKLKPSNAQSQNILPTIGF-SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDR 103 (190)
T ss_dssp EECTTSSHHHHHHHTSCGGGCCSSCCCCSSE-EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCH
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCcCCccce-eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCH
Confidence 6999999999999999987 56667788763 345555655 6789999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEecccc
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE-----SWKAGFVEASAKQ 154 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~ 154 (157)
++++.+..|+..++...... ....|+++|+||+|+.. ....++...+.. ..+++++++||++
T Consensus 104 ~s~~~~~~~~~~~~~~~~~~-----------~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (190)
T 2h57_A 104 LRMVVAKEELDTLLNHPDIK-----------HRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIK 170 (190)
T ss_dssp HHHHHHHHHHHHHHHSTTTT-----------TSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred HHHHHHHHHHHHHHhChhhc-----------cCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCC
Confidence 99999999999988764320 01299999999999965 334455555553 2357899999999
Q ss_pred CCC
Q psy1873 155 DDY 157 (157)
Q Consensus 155 ~~~ 157 (157)
|+|
T Consensus 171 ~~g 173 (190)
T 2h57_A 171 GEG 173 (190)
T ss_dssp TBT
T ss_pred CcC
Confidence 986
No 91
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=2.6e-30 Score=175.14 Aligned_cols=138 Identities=20% Similarity=0.212 Sum_probs=102.8
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+.. +.+|++.. ...+..++ +.+.+||++|++++..++..+++++|++|+|||+++++
T Consensus 35 ~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~ 110 (192)
T 2b6h_A 35 VGLDAAGKTTILYKLKLGEIVT-TIPTIGFN-VETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 110 (192)
T ss_dssp EESTTSSHHHHHHHHCSSCCEE-EEEETTEE-EEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGG
T ss_pred ECCCCCCHHHHHHHHHhCCccc-cCCcCcee-EEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH
Confidence 6999999999999999888763 45677622 33444444 77899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHH-----HHHHhCCcEEEeccccC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKR-----LAESWKAGFVEASAKQD 155 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~~ 155 (157)
+++.+..|+..++....... .|+++|+||+|+.+.. ..++... ++...++++++|||++|
T Consensus 111 s~~~~~~~l~~~~~~~~~~~-------------~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g 175 (192)
T 2b6h_A 111 RVQESADELQKMLQEDELRD-------------AVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQG 175 (192)
T ss_dssp GHHHHHHHHHHHHTCGGGTT-------------CEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTT
T ss_pred HHHHHHHHHHHHhcccccCC-------------CeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCc
Confidence 99999999998876543333 9999999999996532 2222211 11223457999999999
Q ss_pred CC
Q psy1873 156 DY 157 (157)
Q Consensus 156 ~~ 157 (157)
+|
T Consensus 176 ~g 177 (192)
T 2b6h_A 176 TG 177 (192)
T ss_dssp BT
T ss_pred CC
Confidence 86
No 92
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=3.3e-31 Score=178.36 Aligned_cols=141 Identities=17% Similarity=0.238 Sum_probs=104.9
Q ss_pred CCCCCCChhhhHhhhhcc--cccccccCCccceE-EEEEEE---CCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDG--QFVDSYDPTIENTF-VKTTRM---NNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVY 74 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~--~~~~~~~~t~~~~~-~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 74 (157)
||++|||||||+++|++. .+...+.+|++..+ ...+.+ ++..+.+.+||++|++++..+++.++++++++++||
T Consensus 8 vG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 87 (184)
T 2zej_A 8 VGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVY 87 (184)
T ss_dssp ESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEE
T ss_pred ECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEE
Confidence 699999999999999985 55666778887554 333333 345678999999999999999999999999999999
Q ss_pred ECCCh-hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec---HHHHHHHHHHhCCc----
Q psy1873 75 SITSH-KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS---YDEGKRLAESWKAG---- 146 (157)
Q Consensus 75 d~~~~-~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~---- 146 (157)
|++++ .+++.+..|+..+..... . .|+++||||+|+.+.+.+. ...+..+++.++++
T Consensus 88 d~~~~~~s~~~~~~~~~~~~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
T 2zej_A 88 DLSKGQAEVDAMKPWLFNIKARAS--S-------------SPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRD 152 (184)
T ss_dssp EGGGCHHHHHTHHHHHHHHHHHCT--T-------------CEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEE
T ss_pred eCCcchhHHHHHHHHHHHHHhhCC--C-------------CcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhh
Confidence 99997 589999999988876532 2 8999999999997655443 34456777777887
Q ss_pred EEEeccccCC
Q psy1873 147 FVEASAKQDD 156 (157)
Q Consensus 147 ~~e~Sa~~~~ 156 (157)
++++||++|+
T Consensus 153 ~~~~Sa~~~~ 162 (184)
T 2zej_A 153 YHFVNATEES 162 (184)
T ss_dssp EEECCTTSCC
T ss_pred eEEEecccCc
Confidence 9999999985
No 93
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.96 E-value=4.3e-29 Score=167.93 Aligned_cols=138 Identities=20% Similarity=0.256 Sum_probs=111.1
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++. ...+.+|++.. ...+.+++ +.+.+||++|++++..++..+++++|++++|||+++++
T Consensus 24 ~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 99 (186)
T 1ksh_A 24 LGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQ 99 (186)
T ss_dssp ECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGG
T ss_pred ECCCCCCHHHHHHHHhcCC-CCcccccCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHH
Confidence 6999999999999999888 66777887733 34455554 67899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEeccccC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA-----ESWKAGFVEASAKQD 155 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~ 155 (157)
+++.+..|+..++....... .|+++|+||+|+.+... .++..... ...+++++++||++|
T Consensus 100 s~~~~~~~~~~~~~~~~~~~-------------~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (186)
T 1ksh_A 100 RMQDCQRELQSLLVEERLAG-------------ATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTG 164 (186)
T ss_dssp GHHHHHHHHHHHHTCGGGTT-------------CEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred HHHHHHHHHHHHHhChhcCC-------------CcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCC
Confidence 99999999988877643333 99999999999965432 23333322 134568999999999
Q ss_pred CC
Q psy1873 156 DY 157 (157)
Q Consensus 156 ~~ 157 (157)
+|
T Consensus 165 ~g 166 (186)
T 1ksh_A 165 ED 166 (186)
T ss_dssp TT
T ss_pred CC
Confidence 86
No 94
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2e-29 Score=169.83 Aligned_cols=138 Identities=19% Similarity=0.237 Sum_probs=107.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+. .+.+|++.. ...+.+++ +.+.+||++|++++..++..+++++|++|+|||+++++
T Consensus 22 ~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 97 (187)
T 1zj6_A 22 VGLDNAGKTTILYQFSMNEVV-HTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 97 (187)
T ss_dssp EESTTSSHHHHHHHHHTTSCE-EEECCSCSS-CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTT
T ss_pred ECCCCCCHHHHHHHHhcCCCC-cCcCCCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHH
Confidence 699999999999999988877 667777733 34445555 77899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEeccccC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE-----SWKAGFVEASAKQD 155 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~ 155 (157)
+++.+..|+..+........ .|+++|+||+|+.+ ....++...... ..+++++++||++|
T Consensus 98 s~~~~~~~~~~~~~~~~~~~-------------~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g 162 (187)
T 1zj6_A 98 RISVTREELYKMLAHEDLRK-------------AGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTG 162 (187)
T ss_dssp THHHHHHHHHHHHTSGGGTT-------------CEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred HHHHHHHHHHHHHhchhhCC-------------CeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCC
Confidence 99999999999887643223 99999999999965 233444444332 34578999999999
Q ss_pred CC
Q psy1873 156 DY 157 (157)
Q Consensus 156 ~~ 157 (157)
+|
T Consensus 163 ~g 164 (187)
T 1zj6_A 163 EG 164 (187)
T ss_dssp BT
T ss_pred cC
Confidence 86
No 95
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.96 E-value=1e-28 Score=167.23 Aligned_cols=143 Identities=31% Similarity=0.469 Sum_probs=126.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
||++|||||||+++|++..+...+.+|++..+ ...+.++++.+.+.+||++|++++..++..+++.++++++|||+++.
T Consensus 35 vG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 114 (191)
T 1oix_A 35 IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKH 114 (191)
T ss_dssp EECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCH
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCH
Confidence 69999999999999999988888888888655 67888999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.+++.+..|+..+...... . .|+++++||+|+.+.+.+...+++.++...++.++++||++++|
T Consensus 115 ~s~~~~~~~~~~~~~~~~~-~-------------~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~ 178 (191)
T 1oix_A 115 LTYENVERWLKELRDHADS-N-------------IVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTN 178 (191)
T ss_dssp HHHHTHHHHHHHHHHHSCT-T-------------CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred HHHHHHHHHHHHHHHhcCC-C-------------CcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 9999998888776554322 2 89999999999987777888899999999999999999999876
No 96
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=2.7e-29 Score=168.46 Aligned_cols=138 Identities=17% Similarity=0.209 Sum_probs=110.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+ ..+.+|++..+ ..+.+++ +.+.+||++|++++..++..+++++|++|+|||+++++
T Consensus 27 ~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~ 102 (181)
T 2h17_A 27 VGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV-EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 102 (181)
T ss_dssp EEETTSSHHHHHHHHHTTSC-EEEECCSSSSC-EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTT
T ss_pred ECCCCCCHHHHHHHHhcCCC-CccCCcCceee-EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH
Confidence 69999999999999999888 55667777433 4455555 77899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEeccccC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA-----ESWKAGFVEASAKQD 155 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~ 155 (157)
+++.+..|+..++....... .|+++|+||+|+... ...++..... ...+++++++||++|
T Consensus 103 s~~~~~~~~~~~~~~~~~~~-------------~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g 167 (181)
T 2h17_A 103 RISVTREELYKMLAHEDLRK-------------AGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTG 167 (181)
T ss_dssp THHHHHHHHHHHHTCGGGTT-------------CEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred HHHHHHHHHHHHHhChhhCC-------------CeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence 99999999988876543223 999999999999653 3334433332 234568999999999
Q ss_pred CC
Q psy1873 156 DY 157 (157)
Q Consensus 156 ~~ 157 (157)
+|
T Consensus 168 ~g 169 (181)
T 2h17_A 168 EG 169 (181)
T ss_dssp BT
T ss_pred cC
Confidence 86
No 97
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=5.8e-30 Score=172.68 Aligned_cols=138 Identities=22% Similarity=0.223 Sum_probs=108.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+.+.+.. +.+|++.. ...+..++ +.+.+||++|++++..++..+++++|++|+|||+++++
T Consensus 28 ~G~~~~GKssli~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 103 (189)
T 2x77_A 28 LGLDNAGKTSILYRLHLGDVVT-TVPTVGVN-LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRD 103 (189)
T ss_dssp EEETTSSHHHHHHHTCCSCCEE-ECSSTTCC-EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCT
T ss_pred ECCCCCCHHHHHHHHHcCCCCC-cCCCCceE-EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHH
Confidence 6999999999999999887754 56777633 34445554 67899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHH-----HHHHhCCcEEEeccccC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKR-----LAESWKAGFVEASAKQD 155 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~e~Sa~~~ 155 (157)
+++.+..|+..++....... .|+++|+||+|+.+... ..+... .+...+++++++||++|
T Consensus 104 s~~~~~~~~~~~~~~~~~~~-------------~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 168 (189)
T 2x77_A 104 RMGVAKHELYALLDEDELRK-------------SLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTG 168 (189)
T ss_dssp THHHHHHHHHHHHTCSTTTT-------------CEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred HHHHHHHHHHHHHhhhhcCC-------------CeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCc
Confidence 99999999888876543222 99999999999965422 122221 22334568999999999
Q ss_pred CC
Q psy1873 156 DY 157 (157)
Q Consensus 156 ~~ 157 (157)
+|
T Consensus 169 ~g 170 (189)
T 2x77_A 169 DG 170 (189)
T ss_dssp TT
T ss_pred cC
Confidence 86
No 98
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=6.6e-30 Score=171.64 Aligned_cols=138 Identities=20% Similarity=0.232 Sum_probs=107.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++|+++.+ ..+.+|++.. ...+.+++ +.+.+||++|++.+..++..+++++|++++|||+++++
T Consensus 22 vG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 97 (181)
T 1fzq_A 22 LGLDNAGKTTLLKQLASEDI-SHITPTQGFN-IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRK 97 (181)
T ss_dssp EESTTSSHHHHHHHHCCSCC-EEEEEETTEE-EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGG
T ss_pred ECCCCCCHHHHHHHHhcCCC-CcccCcCCeE-EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHH
Confidence 69999999999999998765 3456777632 34555654 67899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEeccccC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA-----ESWKAGFVEASAKQD 155 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~ 155 (157)
+++.+..|+..++....... .|+++|+||+|+.+... .++..... ...++++++|||++|
T Consensus 98 s~~~~~~~~~~~~~~~~~~~-------------~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 162 (181)
T 1fzq_A 98 RFEETGQELTELLEEEKLSC-------------VPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTG 162 (181)
T ss_dssp GHHHHHHHHHHHTTCGGGTT-------------CCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred HHHHHHHHHHHHHhChhhcC-------------CCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCC
Confidence 99999999888766543223 99999999999965433 23322221 123468999999999
Q ss_pred CC
Q psy1873 156 DY 157 (157)
Q Consensus 156 ~~ 157 (157)
+|
T Consensus 163 ~g 164 (181)
T 1fzq_A 163 EG 164 (181)
T ss_dssp TT
T ss_pred CC
Confidence 87
No 99
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=8.3e-29 Score=168.15 Aligned_cols=138 Identities=17% Similarity=0.151 Sum_probs=105.8
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE---EEEEEE-CCeEEEEEEEeCCCCccCcCch---hhhccCCCEEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF---VKTTRM-NNQDYDLKLVDTAGQDEYSIFP---AQYSMDIHGYVLV 73 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~i~D~~g~~~~~~~~---~~~~~~~~~~ilv 73 (157)
+|++|||||||++++.+. +... ++.+..+ .....+ ++..+.+++||++|+++|..+. ..+++++|++|+|
T Consensus 26 vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v 102 (196)
T 3llu_A 26 MGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYV 102 (196)
T ss_dssp EESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEE
T ss_pred ECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEE
Confidence 699999999999987764 3322 3333222 222233 3667889999999999988776 8999999999999
Q ss_pred EECCCh--hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC-------CceecHHHHHHHHH---
Q psy1873 74 YSITSH--KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM-------ERMISYDEGKRLAE--- 141 (157)
Q Consensus 74 ~d~~~~--~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~-------~~~~~~~~~~~~~~--- 141 (157)
||++++ ++++.+..|+..+..... . +|++|||||+|+.+ .+.+...++..+++
T Consensus 103 ~d~~~~~~~~~~~~~~~l~~~~~~~~--~-------------~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~ 167 (196)
T 3llu_A 103 IDAQDDYMEALTRLHITVSKAYKVNP--D-------------MNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL 167 (196)
T ss_dssp EETTSCCHHHHHHHHHHHHHHHHHCT--T-------------CEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EECCCchHHHHHHHHHHHHHHHhcCC--C-------------CcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence 999997 777777778777654332 2 99999999999754 35677777888888
Q ss_pred -HhCCcEEEeccccCCC
Q psy1873 142 -SWKAGFVEASAKQDDY 157 (157)
Q Consensus 142 -~~~~~~~e~Sa~~~~~ 157 (157)
.++++|++|||++ +|
T Consensus 168 ~~~~~~~~e~Sa~~-~~ 183 (196)
T 3llu_A 168 EKLHLSFYLTSIYD-HS 183 (196)
T ss_dssp TTSCEEEEEECTTS-TH
T ss_pred hcCCcceEEEEech-hh
Confidence 7788999999998 64
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=2.1e-29 Score=168.86 Aligned_cols=138 Identities=20% Similarity=0.232 Sum_probs=105.7
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|++|||||||+++++++.+ ..+.+|++.. ...+.+++ ..+.+||++|++++..++..+++++|++++|||+++++
T Consensus 24 ~G~~~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 99 (183)
T 1moz_A 24 LGLDGAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKD 99 (183)
T ss_dssp EEETTSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTT
T ss_pred ECCCCCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHH
Confidence 69999999999999998887 5666777733 34455555 77899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH-----HhCCcEEEeccccC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE-----SWKAGFVEASAKQD 155 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~ 155 (157)
+++.+..|+..++....... .|+++|+||+|+.+. ...++...... ..+++++++||++|
T Consensus 100 s~~~~~~~~~~~~~~~~~~~-------------~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (183)
T 1moz_A 100 RMSTASKELHLMLQEEELQD-------------AALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKG 164 (183)
T ss_dssp THHHHHHHHHHHTTSSTTSS-------------CEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGT
T ss_pred HHHHHHHHHHHHHcChhhCC-------------CeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence 99999999988876543222 999999999999653 23343333322 22357999999999
Q ss_pred CC
Q psy1873 156 DY 157 (157)
Q Consensus 156 ~~ 157 (157)
+|
T Consensus 165 ~g 166 (183)
T 1moz_A 165 EG 166 (183)
T ss_dssp BT
T ss_pred cC
Confidence 86
No 101
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.96 E-value=3.4e-29 Score=180.62 Aligned_cols=138 Identities=20% Similarity=0.179 Sum_probs=103.1
Q ss_pred CCCCCCChhhhHhhhhcccccc---cccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC---chhhhccCCCEEEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVD---SYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI---FPAQYSMDIHGYVLVY 74 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~~ilv~ 74 (157)
||++|||||||++++.++.+.. .+.+|++..+.. ++ ..+.++||||+||++|.. +++.++++++++|+||
T Consensus 5 lGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~ 80 (331)
T 3r7w_B 5 MGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVI 80 (331)
T ss_dssp ECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEEC
T ss_pred ECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEE
Confidence 6999999999999987654432 356788865532 22 457899999999999974 4689999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC-------ceecHHHHHHHHHH----h
Q psy1873 75 SITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME-------RMISYDEGKRLAES----W 143 (157)
Q Consensus 75 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~-------~~~~~~~~~~~~~~----~ 143 (157)
|++++ +.+...||..++...... .+.+|++|+|||+|+..+ +++..++++.+++. +
T Consensus 81 Ditd~--~~~~~~~l~~~l~~~~~~-----------~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~ 147 (331)
T 3r7w_B 81 DSQDE--YINAITNLAMIIEYAYKV-----------NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGV 147 (331)
T ss_dssp CCSSC--TTHHHHHHHHHHHHHHHH-----------CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCC
T ss_pred ECCch--HHHHHHHHHHHHHHHhhc-----------CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhccccc
Confidence 99998 333334443333222110 112999999999999754 56888888899986 6
Q ss_pred CCcEEEeccccC
Q psy1873 144 KAGFVEASAKQD 155 (157)
Q Consensus 144 ~~~~~e~Sa~~~ 155 (157)
+++|+||||++.
T Consensus 148 ~i~f~eTSAkd~ 159 (331)
T 3r7w_B 148 QVSFYLTSIFDH 159 (331)
T ss_dssp CEEEECCCSSSS
T ss_pred CceEEEeccCCC
Confidence 899999999973
No 102
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.5e-29 Score=177.38 Aligned_cols=138 Identities=22% Similarity=0.305 Sum_probs=104.0
Q ss_pred CCChhhhHhhhhc---ccccccccCCc-cceE-EEE--------------EEECCeEEEEEEEe----------------
Q psy1873 5 SVGKSSLSIQFVD---GQFVDSYDPTI-ENTF-VKT--------------TRMNNQDYDLKLVD---------------- 49 (157)
Q Consensus 5 ~~GKssli~~~~~---~~~~~~~~~t~-~~~~-~~~--------------~~~~~~~~~~~i~D---------------- 49 (157)
|||||||+++|++ ..+...+.+|+ +..+ ... ..+++..+.+++||
T Consensus 38 ~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~i~D~~~~~D~~~~~~~~~~ 117 (255)
T 3c5h_A 38 GIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRST 117 (255)
T ss_dssp CCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CEEEEEECCCEETTTCSBTTGG
T ss_pred CcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEEEEEEcccccccccccccccc
Confidence 9999999999998 56666666665 3221 111 12567788999999
Q ss_pred -------CCCCccCcCchhhhcc---------------------CCCEEEEEEECCCh--hhHHHHHHHHHHHHHHhccc
Q psy1873 50 -------TAGQDEYSIFPAQYSM---------------------DIHGYVLVYSITSH--KSFEVVQILYDKLLDMTGKI 99 (157)
Q Consensus 50 -------~~g~~~~~~~~~~~~~---------------------~~~~~ilv~d~~~~--~s~~~~~~~~~~i~~~~~~~ 99 (157)
++|+++|..++..+++ ++|++|+|||++++ .+|+.+..|+..+.......
T Consensus 118 ~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~ 197 (255)
T 3c5h_A 118 ALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKT 197 (255)
T ss_dssp GCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHT
T ss_pred ccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccC
Confidence 7788888888888888 79999999999998 99999999999988763322
Q ss_pred cCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-hCCcEEEeccccCCC
Q psy1873 100 QNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES-WKAGFVEASAKQDDY 157 (157)
Q Consensus 100 ~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~ 157 (157)
. +|++|||||+|+...+.+ +++..++.. .+++++++||++|+|
T Consensus 198 ~-------------~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~g 241 (255)
T 3c5h_A 198 K-------------KPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVN 241 (255)
T ss_dssp T-------------CCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred C-------------CCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCC
Confidence 3 999999999999665554 577888876 488999999999986
No 103
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=1e-28 Score=169.61 Aligned_cols=116 Identities=19% Similarity=0.340 Sum_probs=89.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCe-EEEEEEEeCCCCccCcC-chhhhccCCCEEEEEEECCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQ-DYDLKLVDTAGQDEYSI-FPAQYSMDIHGYVLVYSITS 78 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~ilv~d~~~ 78 (157)
+|++|||||||+++|+++.+...+.++... +. .+.+++. .+.+.+||++|++++.. ++..++++++++|+|||+++
T Consensus 13 vG~~~~GKTsli~~l~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~ 90 (214)
T 2fh5_B 13 VGLCDSGKTLLFVRLLTGQYRDTQTSITDS-SA-IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAA 90 (214)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCCBCCCCSCE-EE-EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTT
T ss_pred ECCCCCCHHHHHHHHhCCCcccccCCccee-eE-EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCC
Confidence 699999999999999999888777655433 32 2566654 57899999999999988 88899999999999999999
Q ss_pred hh-hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc
Q psy1873 79 HK-SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER 129 (157)
Q Consensus 79 ~~-s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~ 129 (157)
.. ++..+..|+..++...... ...+|++||+||+|+...+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 91 FQREVKDVAEFLYQVLIDSMAL-----------KNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS-----------TTCCEEEEEEECTTSTTCC
T ss_pred cCHHHHHHHHHHHHHHhhhhhc-----------ccCCCEEEEEECCCCCCcc
Confidence 64 5777777666665442111 1128999999999997543
No 104
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=1.2e-27 Score=172.91 Aligned_cols=141 Identities=19% Similarity=0.217 Sum_probs=112.2
Q ss_pred CCCCCCChhhhHhhhhcc--ccc-ccccCCccceEEEEEEECCeEEEEEEEeCCCCccC-----cCchhhhccCCCEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDG--QFV-DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-----SIFPAQYSMDIHGYVL 72 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~--~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~~~~~~~il 72 (157)
+|++|||||||+++|+++ .+. ..+.+|++..+. .+.+++ .+.+.+||++|++++ ..++..+++++|++|+
T Consensus 9 vG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~ 86 (307)
T 3r7w_A 9 MGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIH 86 (307)
T ss_dssp ECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEE
T ss_pred ECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEE
Confidence 699999999999999876 333 245667765543 344444 578999999999998 7889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC--Cce----ecHHHHHHHHHHhC--
Q psy1873 73 VYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM--ERM----ISYDEGKRLAESWK-- 144 (157)
Q Consensus 73 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~--~~~----~~~~~~~~~~~~~~-- 144 (157)
|||++++++++.+..|...+...... .+.+|++|||||+|+.+ .+. +...++..+++.+|
T Consensus 87 V~D~t~~~s~~~l~~~~~~l~~l~~~------------~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~ 154 (307)
T 3r7w_A 87 VFDVESTEVLKDIEIFAKALKQLRKY------------SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFP 154 (307)
T ss_dssp EEETTCSCHHHHHHHHHHHHHHHHHH------------CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred EEECCChhhHHHHHHHHHHHHHHHHh------------CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999997776555443221 11299999999999976 454 66788999999997
Q ss_pred -CcEEEeccccC
Q psy1873 145 -AGFVEASAKQD 155 (157)
Q Consensus 145 -~~~~e~Sa~~~ 155 (157)
++++++||+++
T Consensus 155 ~~~~~~tSa~~~ 166 (307)
T 3r7w_A 155 NLIGFPTSIWDE 166 (307)
T ss_dssp SCEEEECCTTSS
T ss_pred CeEEEEeeecCC
Confidence 79999999983
No 105
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=2.2e-27 Score=157.10 Aligned_cols=134 Identities=20% Similarity=0.170 Sum_probs=98.1
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcC------chhhhcc--CCCEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSI------FPAQYSM--DIHGYV 71 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~--~~~~~i 71 (157)
+|++|||||||+++|++..+.....+++. ......+.+++ ..+.+||++|+.++.. +...++. ++++++
T Consensus 9 vG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i 86 (165)
T 2wji_A 9 IGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVV 86 (165)
T ss_dssp ECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEE
T ss_pred ECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEE
Confidence 69999999999999998776544445443 22344556665 5689999999988763 3355664 899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873 72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS 151 (157)
Q Consensus 72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 151 (157)
+|+|.++.++ ...|+..+... . .|+++|+||+|+...+.+.. ++..+++.++++++++|
T Consensus 87 ~v~D~~~~~~---~~~~~~~~~~~----~-------------~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~S 145 (165)
T 2wji_A 87 NIVDATALER---NLYLTLQLMEM----G-------------ANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLS 145 (165)
T ss_dssp EEEETTCHHH---HHHHHHHHHHT----T-------------CCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECB
T ss_pred EEecCCchhH---hHHHHHHHHhc----C-------------CCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEE
Confidence 9999998654 34466665432 2 99999999999865444442 46788888999999999
Q ss_pred cccCCC
Q psy1873 152 AKQDDY 157 (157)
Q Consensus 152 a~~~~~ 157 (157)
|++|+|
T Consensus 146 A~~~~~ 151 (165)
T 2wji_A 146 AAKKMG 151 (165)
T ss_dssp GGGTBS
T ss_pred cCCCCC
Confidence 999986
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.94 E-value=3.8e-28 Score=176.97 Aligned_cols=138 Identities=17% Similarity=0.215 Sum_probs=103.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
||++|||||||+++|+++.+...+ +|++..+ ..+.. ..+.+.+||++|++.+..++..+++.+|++|+|||++++.
T Consensus 171 vG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~-~~~~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~ 246 (329)
T 3o47_A 171 VGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV-ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 246 (329)
T ss_dssp EESTTSSHHHHHHHTCSSCCEEEE-EETTEEE-EEEEE--TTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSS
T ss_pred ECCCCccHHHHHHHHhCCCCCCcc-cccceEE-EEEec--CcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchH
Confidence 699999999999999998876544 6666433 23334 3477899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEeccccC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA-----ESWKAGFVEASAKQD 155 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~ 155 (157)
+|+.+..|+..++....... +|++||+||+|+.+... ..+..... ...+++++++||++|
T Consensus 247 s~~~~~~~~~~~~~~~~~~~-------------~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g 311 (329)
T 3o47_A 247 RVNEAREELMRMLAEDELRD-------------AVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSG 311 (329)
T ss_dssp SHHHHHHHHHHHHTCGGGTT-------------CEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTT
T ss_pred HHHHHHHHHHHHHhhhccCC-------------CeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCC
Confidence 99999999988877654333 99999999999965432 22222211 122457999999999
Q ss_pred CC
Q psy1873 156 DY 157 (157)
Q Consensus 156 ~~ 157 (157)
+|
T Consensus 312 ~g 313 (329)
T 3o47_A 312 DG 313 (329)
T ss_dssp BT
T ss_pred cC
Confidence 86
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.94 E-value=2.3e-27 Score=181.23 Aligned_cols=138 Identities=17% Similarity=0.213 Sum_probs=108.1
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
||.+|||||||+++|+++.+.. +.+|++..+. .+.. ..+.+.+|||+|++.+..++..+++.+|++|+|||+++++
T Consensus 328 vG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~-~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~ 403 (497)
T 3lvq_E 328 LGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRD 403 (497)
T ss_dssp ECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEE-EEES--SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGG
T ss_pred EcCCCCCHHHHHHHHhcCCCCC-cCCccceeEE-EEEe--CCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchh
Confidence 6999999999999999988654 4567774432 2333 4477899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH-----HHhCCcEEEeccccC
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA-----ESWKAGFVEASAKQD 155 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~ 155 (157)
+|+.+..|+..++....... +|++||+||+|+.+.. ...+..... ...++++++|||++|
T Consensus 404 s~~~~~~~~~~~~~~~~~~~-------------~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 468 (497)
T 3lvq_E 404 RIDEARQELHRIINDREMRD-------------AIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSG 468 (497)
T ss_dssp GHHHHHHHHHHHHTSGGGTT-------------CEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTTT
T ss_pred HHHHHHHHHHHHhhhhhcCC-------------CcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCCC
Confidence 99999999999887654333 9999999999996532 222222211 112346999999999
Q ss_pred CC
Q psy1873 156 DY 157 (157)
Q Consensus 156 ~~ 157 (157)
+|
T Consensus 469 ~g 470 (497)
T 3lvq_E 469 DG 470 (497)
T ss_dssp BT
T ss_pred CC
Confidence 86
No 108
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=6.1e-28 Score=166.16 Aligned_cols=139 Identities=21% Similarity=0.298 Sum_probs=103.9
Q ss_pred CCCCCCChhhhHhhhhcccccc---cccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccC----CCEEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVD---SYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMD----IHGYVLV 73 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~----~~~~ilv 73 (157)
+|++|||||||+++|++..+.. .+.++++..+ ....+.+||++|++.+...+..+++. ++++|+|
T Consensus 18 ~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v 89 (218)
T 1nrj_B 18 AGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM 89 (218)
T ss_dssp ECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEE
T ss_pred ECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEE
Confidence 6999999999999999887643 2444444322 44678999999999999888888887 8999999
Q ss_pred EECC-ChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec------HHHHHHHHHHhCCc
Q psy1873 74 YSIT-SHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS------YDEGKRLAESWKAG 146 (157)
Q Consensus 74 ~d~~-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~ 146 (157)
||++ ++++++.+..|+..++...... ....+|+++|+||+|+...+.+. .+++..++...+++
T Consensus 90 ~D~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 90 VDSTVDPKKLTTTAEFLVDILSITESS----------CENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp EETTSCTTCCHHHHHHHHHHHHHHHHH----------STTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhccccc----------ccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999 8999999999998888764310 00129999999999997766544 55677888888899
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
++++||++|++
T Consensus 160 ~~~~Sa~~~~~ 170 (218)
T 1nrj_B 160 LNEVERKINEE 170 (218)
T ss_dssp HHC--------
T ss_pred ccccccccccc
Confidence 99999999874
No 109
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=2.5e-26 Score=176.91 Aligned_cols=139 Identities=19% Similarity=0.169 Sum_probs=103.6
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEE-------E--ECCeEEEEEEEeCCCCccCcCchhhhccCCCEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTT-------R--MNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYV 71 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~-------~--~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 71 (157)
||++|||||||+++|+++.+...+.+|++..+.... . .++..+.+.+||++|++.+..++..++++++++|
T Consensus 47 vG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii 126 (535)
T 3dpu_A 47 IGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYM 126 (535)
T ss_dssp ESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEE
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEE
Confidence 699999999999999999998888899886664332 1 1334678999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873 72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS 151 (157)
Q Consensus 72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 151 (157)
+|||+++. +.+..|+..+...... .|++||+||+|+...+.+..++++.++...+++++++|
T Consensus 127 ~V~D~s~~---~~~~~~~~~l~~~~~~---------------~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vS 188 (535)
T 3dpu_A 127 LLLDSRTD---SNKHYWLRHIEKYGGK---------------SPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRIS 188 (535)
T ss_dssp EEECGGGG---GGHHHHHHHHHHHSSS---------------CCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECC
T ss_pred EEEeCCCc---hhHHHHHHHHHHhCCC---------------CCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEe
Confidence 99998765 4556777777665432 89999999999988788888889999999999999999
Q ss_pred cccCCC
Q psy1873 152 AKQDDY 157 (157)
Q Consensus 152 a~~~~~ 157 (157)
|++|+|
T Consensus 189 A~~g~g 194 (535)
T 3dpu_A 189 CKNGDG 194 (535)
T ss_dssp C-----
T ss_pred cCcccC
Confidence 999986
No 110
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.93 E-value=2.6e-25 Score=148.16 Aligned_cols=131 Identities=20% Similarity=0.271 Sum_probs=96.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC-
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS- 78 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~- 78 (157)
+|++|||||||+++|+++.+...+.+++...+ ...+.+++. .+.+||++|++++..++..++..+|++|+|||+++
T Consensus 14 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 91 (178)
T 2lkc_A 14 MGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDG 91 (178)
T ss_dssp ESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCC
T ss_pred ECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 69999999999999999888776666655333 455667774 46799999999999999999999999999999998
Q ss_pred --hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH-------hC--CcE
Q psy1873 79 --HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES-------WK--AGF 147 (157)
Q Consensus 79 --~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~-------~~--~~~ 147 (157)
+++++.+. .+ . ... +|+++|+||+|+.... .++....... ++ +++
T Consensus 92 ~~~~~~~~l~----~~---~-~~~-------------~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 147 (178)
T 2lkc_A 92 VMPQTVEAIN----HA---K-AAN-------------VPIIVAINKMDKPEAN---PDRVMQELMEYNLVPEEWGGDTIF 147 (178)
T ss_dssp CCHHHHHHHH----HH---G-GGS-------------CCEEEEEETTTSSCSC---HHHHHHHHTTTTCCBTTTTSSEEE
T ss_pred CcHHHHHHHH----HH---H-hCC-------------CCEEEEEECccCCcCC---HHHHHHHHHhcCcChhHcCCcccE
Confidence 44444332 11 1 112 9999999999996531 2222222222 22 589
Q ss_pred EEeccccCCC
Q psy1873 148 VEASAKQDDY 157 (157)
Q Consensus 148 ~e~Sa~~~~~ 157 (157)
+++||++|+|
T Consensus 148 ~~~Sa~~~~g 157 (178)
T 2lkc_A 148 CKLSAKTKEG 157 (178)
T ss_dssp EECCSSSSHH
T ss_pred EEEecCCCCC
Confidence 9999999875
No 111
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.93 E-value=3.3e-25 Score=153.69 Aligned_cols=140 Identities=19% Similarity=0.100 Sum_probs=95.4
Q ss_pred CCCCCCChhhhHhhhhcccccccc-cCCccceEEEEEEECCeEEEEEEEeCCCCccCc---------CchhhhccCCCEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSY-DPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS---------IFPAQYSMDIHGY 70 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~~~~~~ 70 (157)
+|++|||||||+++|+++.+.... ..+...........++ ..+.+||++|+.... ..+..++..+|++
T Consensus 35 vG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~ 112 (228)
T 2qu8_A 35 SGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVI 112 (228)
T ss_dssp ECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEE
T ss_pred ECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEE
Confidence 699999999999999998775322 2222222233334444 678999999984321 1123457888999
Q ss_pred EEEEECCChhhHHH--HHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHH---HHHHHHHHhC-
Q psy1873 71 VLVYSITSHKSFEV--VQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYD---EGKRLAESWK- 144 (157)
Q Consensus 71 ilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~---~~~~~~~~~~- 144 (157)
|+|||++++.+++. ...|+..+.... ...|+++|+||+|+.+.+.+... ....++...+
T Consensus 113 i~v~d~~~~~s~~~~~~~~~~~~l~~~~---------------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 177 (228)
T 2qu8_A 113 LFIIDISEQCGLTIKEQINLFYSIKSVF---------------SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKN 177 (228)
T ss_dssp EEEEETTCTTSSCHHHHHHHHHHHHTCC----------------CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCS
T ss_pred EEEEecccccCcchHHHHHHHHHHHHhh---------------cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCC
Confidence 99999999988752 234554443321 12999999999999776666554 4667777777
Q ss_pred -CcEEEeccccCCC
Q psy1873 145 -AGFVEASAKQDDY 157 (157)
Q Consensus 145 -~~~~e~Sa~~~~~ 157 (157)
++++++||++|+|
T Consensus 178 ~~~~~~~SA~~g~g 191 (228)
T 2qu8_A 178 PIKFSSFSTLTGVG 191 (228)
T ss_dssp CEEEEECCTTTCTT
T ss_pred CceEEEEecccCCC
Confidence 8999999999986
No 112
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=7.4e-26 Score=152.22 Aligned_cols=134 Identities=21% Similarity=0.173 Sum_probs=101.7
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcC------chhhhcc--CCCEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSI------FPAQYSM--DIHGYV 71 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~--~~~~~i 71 (157)
+|++|||||||+++|++..+.....+++. ......+..++ ..+.+||++|+..+.. ++..++. .+++++
T Consensus 13 vG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i 90 (188)
T 2wjg_A 13 IGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVV 90 (188)
T ss_dssp ECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEE
T ss_pred ECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEE
Confidence 69999999999999998766544445544 33355556665 6789999999998853 4556664 589999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873 72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS 151 (157)
Q Consensus 72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 151 (157)
+|+|.++ ++....|+..+... . .|+++|+||+|+...+.+. .++..+++.++++++++|
T Consensus 91 ~v~d~~~---~~~~~~~~~~~~~~----~-------------~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~S 149 (188)
T 2wjg_A 91 NIVDATA---LERNLYLTLQLMEM----G-------------ANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLS 149 (188)
T ss_dssp EEEEGGG---HHHHHHHHHHHHTT----T-------------CCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECB
T ss_pred EEecchh---HHHHHHHHHHHHhc----C-------------CCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEE
Confidence 9999875 55566677666542 2 8999999999986544444 457888889999999999
Q ss_pred cccCCC
Q psy1873 152 AKQDDY 157 (157)
Q Consensus 152 a~~~~~ 157 (157)
|++|+|
T Consensus 150 a~~~~~ 155 (188)
T 2wjg_A 150 AAKKMG 155 (188)
T ss_dssp GGGTBS
T ss_pred ecCCCC
Confidence 999976
No 113
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.92 E-value=1.2e-25 Score=147.48 Aligned_cols=132 Identities=16% Similarity=0.048 Sum_probs=91.6
Q ss_pred CCCCCCChhhhHhhhhccccc--ccccCCccceEEEEEEECCeEEEEEEEeCCCCccC-------cCchhhhccCCCEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-------SIFPAQYSMDIHGYV 71 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~~~~i 71 (157)
+|++|||||||+++|.+..+. ..+.++....+...+..++. .+.+||++|+..+ ...+..+++.+|+++
T Consensus 7 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i 84 (161)
T 2dyk_A 7 VGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVL 84 (161)
T ss_dssp ECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEE
T ss_pred ECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEE
Confidence 699999999999999987643 23333333444556666664 6789999998874 334566789999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEe
Q psy1873 72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVEA 150 (157)
Q Consensus 72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~ 150 (157)
+|+|++++.+.. ..++..++... . .|+++|+||+|+.+.. +++..++ .+++ +++++
T Consensus 85 ~v~d~~~~~~~~--~~~~~~~~~~~---~-------------~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~ 141 (161)
T 2dyk_A 85 FAVDGRAELTQA--DYEVAEYLRRK---G-------------KPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPT 141 (161)
T ss_dssp EEEESSSCCCHH--HHHHHHHHHHH---T-------------CCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEEC
T ss_pred EEEECCCcccHh--HHHHHHHHHhc---C-------------CCEEEEEECcccccch----HhHHHHH-hCCCCCeEEE
Confidence 999999864432 23344443332 2 9999999999996542 3344555 6787 89999
Q ss_pred ccccCCC
Q psy1873 151 SAKQDDY 157 (157)
Q Consensus 151 Sa~~~~~ 157 (157)
||++|+|
T Consensus 142 Sa~~~~g 148 (161)
T 2dyk_A 142 SSEHARG 148 (161)
T ss_dssp BTTTTBS
T ss_pred ecccCCC
Confidence 9999986
No 114
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.92 E-value=4.3e-26 Score=151.93 Aligned_cols=133 Identities=20% Similarity=0.240 Sum_probs=96.3
Q ss_pred CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCch--------hhhccCCCEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP--------AQYSMDIHGY 70 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~~~~~~~ 70 (157)
+|++|||||||+++|++..+ ...+.++..+.+...+.+++. .+.+||++|+.++.... ..+++.+|++
T Consensus 10 vG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~ 87 (172)
T 2gj8_A 10 AGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEIEQADRV 87 (172)
T ss_dssp EESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEE
T ss_pred ECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEE
Confidence 69999999999999998764 233444444555677777774 47899999987654321 1357899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEe
Q psy1873 71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEA 150 (157)
Q Consensus 71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 150 (157)
++|||++++.+++ ...|+..+...... . +|+++|+||+|+..... .++...+++++++
T Consensus 88 i~v~D~~~~~s~~-~~~~~~~~~~~~~~-~-------------~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~ 145 (172)
T 2gj8_A 88 LFMVDGTTTDAVD-PAEIWPEFIARLPA-K-------------LPITVVRNKADITGETL-------GMSEVNGHALIRL 145 (172)
T ss_dssp EEEEETTTCCCCS-HHHHCHHHHHHSCT-T-------------CCEEEEEECHHHHCCCC-------EEEEETTEEEEEC
T ss_pred EEEEECCCCCCHH-HHHHHHHHHHhccc-C-------------CCEEEEEECccCCcchh-------hhhhccCCceEEE
Confidence 9999999998876 34677766654422 2 99999999999854211 1122346799999
Q ss_pred ccccCCC
Q psy1873 151 SAKQDDY 157 (157)
Q Consensus 151 Sa~~~~~ 157 (157)
||++|+|
T Consensus 146 SA~~g~g 152 (172)
T 2gj8_A 146 SARTGEG 152 (172)
T ss_dssp CTTTCTT
T ss_pred eCCCCCC
Confidence 9999986
No 115
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.92 E-value=2.6e-26 Score=154.51 Aligned_cols=136 Identities=18% Similarity=0.246 Sum_probs=103.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCC-----------CccCcCchhhhccC-CC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAG-----------QDEYSIFPAQYSMD-IH 68 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~~~~-~~ 68 (157)
+|++|||||||+++|++..+...+.+++... ......+ .+.+||++| ++.+..++..+++. ++
T Consensus 7 ~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (190)
T 2cxx_A 7 AGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK-IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAK 81 (190)
T ss_dssp EEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS-CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGG
T ss_pred ECCCCCCHHHHHHHHhCcCCccCCCCCccce-eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhc
Confidence 6999999999999999998876666655422 2222333 578999999 56677777788887 88
Q ss_pred EEEEEEECCChhhHHHH-HHHHHH--------HHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHH
Q psy1873 69 GYVLVYSITSHKSFEVV-QILYDK--------LLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRL 139 (157)
Q Consensus 69 ~~ilv~d~~~~~s~~~~-~~~~~~--------i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~ 139 (157)
++++||++.|..+++.+ ..|... +........ +|+++|+||+|+...+ .+++..+
T Consensus 82 ~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~piilv~nK~Dl~~~~---~~~~~~~ 145 (190)
T 2cxx_A 82 NIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD-------------IPTIVAVNKLDKIKNV---QEVINFL 145 (190)
T ss_dssp GCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTT-------------CCEEEEEECGGGCSCH---HHHHHHH
T ss_pred cCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcC-------------CceEEEeehHhccCcH---HHHHHHH
Confidence 88888999999999887 555542 333332222 9999999999997654 5678889
Q ss_pred HHHhCCc-------EEEeccccCCC
Q psy1873 140 AESWKAG-------FVEASAKQDDY 157 (157)
Q Consensus 140 ~~~~~~~-------~~e~Sa~~~~~ 157 (157)
++.++++ ++++||++|+|
T Consensus 146 ~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (190)
T 2cxx_A 146 AEKFEVPLSEIDKVFIPISAKFGDN 170 (190)
T ss_dssp HHHHTCCGGGHHHHEEECCTTTCTT
T ss_pred HHHhhhhhhccCCcEEEEecCCCCC
Confidence 9999875 69999999986
No 116
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.92 E-value=7.1e-25 Score=154.79 Aligned_cols=134 Identities=17% Similarity=0.151 Sum_probs=99.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcCch------hhhc--cCCCEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP------AQYS--MDIHGYV 71 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~------~~~~--~~~~~~i 71 (157)
+|++|||||||+++|++..+.....+++. ......+..++ ..+.+||+||+..+...+ ..++ ..+|+++
T Consensus 11 vG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii 88 (258)
T 3a1s_A 11 AGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVI 88 (258)
T ss_dssp ECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEE
T ss_pred ECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEE
Confidence 69999999999999998776544334333 22233444444 678999999999887643 4555 5899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873 72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS 151 (157)
Q Consensus 72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 151 (157)
+|+|.++.++.. .|+.++.+. . +|+++|+||+|+...+.+.. +...+++.+|++++++|
T Consensus 89 ~V~D~t~~~~~~---~~~~~l~~~----~-------------~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~S 147 (258)
T 3a1s_A 89 LVADSVNPEQSL---YLLLEILEM----E-------------KKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTS 147 (258)
T ss_dssp EEEETTSCHHHH---HHHHHHHTT----T-------------CCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECC
T ss_pred EEeCCCchhhHH---HHHHHHHhc----C-------------CCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEE
Confidence 999999876543 355555443 2 99999999999865544442 47888999999999999
Q ss_pred cccCCC
Q psy1873 152 AKQDDY 157 (157)
Q Consensus 152 a~~~~~ 157 (157)
|++|+|
T Consensus 148 A~~g~g 153 (258)
T 3a1s_A 148 SVTGEG 153 (258)
T ss_dssp TTTCTT
T ss_pred eeCCcC
Confidence 999986
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.91 E-value=5.5e-24 Score=153.76 Aligned_cols=139 Identities=16% Similarity=0.108 Sum_probs=105.9
Q ss_pred CCCCCCChhhhHhhhhccccc--ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCc----------CchhhhccCCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS----------IFPAQYSMDIH 68 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------~~~~~~~~~~~ 68 (157)
+|.+|||||||+|+|++.++. .....|+..........+ ....+.+|||||+.++. .....+++.+|
T Consensus 16 vG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD 94 (308)
T 3iev_A 16 VGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEAD 94 (308)
T ss_dssp ECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCS
T ss_pred ECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCC
Confidence 699999999999999998774 223333333333333443 14678999999997665 45567788999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--Cc
Q psy1873 69 GYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK--AG 146 (157)
Q Consensus 69 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~ 146 (157)
++++|+|+++..+++....|+..+... . .|+++|+||+|+...+.........+...++ .+
T Consensus 95 ~il~VvD~~~~~~~~~~~~~~~~l~~~----~-------------~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~ 157 (308)
T 3iev_A 95 VILFMIDATEGWRPRDEEIYQNFIKPL----N-------------KPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTE 157 (308)
T ss_dssp EEEEEEETTTBSCHHHHHHHHHHTGGG----C-------------CCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCC
T ss_pred EEEEEEeCCCCCCchhHHHHHHHHHhc----C-------------CCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCe
Confidence 999999999998888877666665441 2 9999999999997445566677788888876 79
Q ss_pred EEEeccccCCC
Q psy1873 147 FVEASAKQDDY 157 (157)
Q Consensus 147 ~~e~Sa~~~~~ 157 (157)
++++||++|+|
T Consensus 158 i~~vSA~~g~g 168 (308)
T 3iev_A 158 IVPISALKGAN 168 (308)
T ss_dssp EEECBTTTTBS
T ss_pred EEEEeCCCCCC
Confidence 99999999986
No 118
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.91 E-value=7.6e-25 Score=154.46 Aligned_cols=134 Identities=14% Similarity=0.138 Sum_probs=100.1
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcC----------chhhhc--cCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSI----------FPAQYS--MDI 67 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~--~~~ 67 (157)
+|++|||||||+|+|++..+.....+++. +.....+..++. .+.+||+||+..+.. +...++ ..+
T Consensus 7 vG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~ 84 (256)
T 3iby_A 7 IGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEY 84 (256)
T ss_dssp EESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHHHHSCC
T ss_pred ECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCC
Confidence 69999999999999998876544445444 334566666764 679999999988774 455666 899
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcE
Q psy1873 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGF 147 (157)
Q Consensus 68 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 147 (157)
|++|+|+|.++.++...+..++.. . . .|+++|+||+|+...+.+.. ....+++.+++++
T Consensus 85 d~vi~VvDas~~~~~~~l~~~l~~---~----~-------------~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~v 143 (256)
T 3iby_A 85 DCIINVIDACHLERHLYLTSQLFE---L----G-------------KPVVVALNMMDIAEHRGISI-DTEKLESLLGCSV 143 (256)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHTT---S----C-------------SCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCE
T ss_pred CEEEEEeeCCCchhHHHHHHHHHH---c----C-------------CCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCE
Confidence 999999999997766554443322 1 2 99999999999865433322 2456788889999
Q ss_pred EEeccccCCC
Q psy1873 148 VEASAKQDDY 157 (157)
Q Consensus 148 ~e~Sa~~~~~ 157 (157)
+++||++|+|
T Consensus 144 i~~SA~~g~g 153 (256)
T 3iby_A 144 IPIQAHKNIG 153 (256)
T ss_dssp EECBGGGTBS
T ss_pred EEEECCCCCC
Confidence 9999999986
No 119
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.91 E-value=5.8e-25 Score=156.20 Aligned_cols=134 Identities=18% Similarity=0.146 Sum_probs=98.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC------chhhhcc--CCCEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI------FPAQYSM--DIHGYVL 72 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~--~~~~~il 72 (157)
+|++|||||||+++|++........+++... .....++. ...+.+||+||+.++.. +...++. .+|++++
T Consensus 9 vG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~-~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~ 86 (272)
T 3b1v_A 9 IGNPNSGKTSLFNLITGHNQRVGNWPGVTVE-RKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILN 86 (272)
T ss_dssp ECCTTSSHHHHHHHHHCCCCCCCSSSCCCCS-CEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEE
T ss_pred ECCCCCCHHHHHHHHHCCCCcccCCCCCcEE-EEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEE
Confidence 6999999999999999876433222322211 23334454 56789999999998863 4555665 6999999
Q ss_pred EEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEecc
Q psy1873 73 VYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152 (157)
Q Consensus 73 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 152 (157)
|+|.++.++. ..|..++.+. . +|+++++||+|+...+.+. .+...+++.++++++++||
T Consensus 87 V~D~t~~e~~---~~~~~~l~~~----~-------------~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA 145 (272)
T 3b1v_A 87 VVDATNLERN---LYLTTQLIET----G-------------IPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSA 145 (272)
T ss_dssp EEEGGGHHHH---HHHHHHHHHT----C-------------SCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBT
T ss_pred EecCCchHhH---HHHHHHHHhc----C-------------CCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEc
Confidence 9999887654 3455555442 2 9999999999986544444 3567888999999999999
Q ss_pred ccCCC
Q psy1873 153 KQDDY 157 (157)
Q Consensus 153 ~~~~~ 157 (157)
++|+|
T Consensus 146 ~~g~g 150 (272)
T 3b1v_A 146 LKQTG 150 (272)
T ss_dssp TTTBS
T ss_pred cCCCC
Confidence 99986
No 120
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.91 E-value=4.9e-25 Score=148.99 Aligned_cols=136 Identities=18% Similarity=0.254 Sum_probs=88.5
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCC----------CccCcCchhhhccCC--
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAG----------QDEYSIFPAQYSMDI-- 67 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~~~~~~~-- 67 (157)
+|++|||||||+++|+++.+...+.++.+... .....+++ .+.+||++| ++.+..++..+++.+
T Consensus 29 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (195)
T 1svi_A 29 AGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREE 105 (195)
T ss_dssp EEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTT
T ss_pred ECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhc
Confidence 69999999999999999876655555555333 22233343 578999999 667777788888777
Q ss_pred -CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecH--HHHHH-HHHHh
Q psy1873 68 -HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISY--DEGKR-LAESW 143 (157)
Q Consensus 68 -~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~--~~~~~-~~~~~ 143 (157)
+++++|+|++++.++.... ++ ..+.. .. .|+++|+||+|+.+.+.+.. ++... ++...
T Consensus 106 ~~~~i~v~d~~~~~~~~~~~-~~-~~~~~---~~-------------~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 167 (195)
T 1svi_A 106 LKAVVQIVDLRHAPSNDDVQ-MY-EFLKY---YG-------------IPVIVIATKADKIPKGKWDKHAKVVRQTLNIDP 167 (195)
T ss_dssp EEEEEEEEETTSCCCHHHHH-HH-HHHHH---TT-------------CCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCT
T ss_pred CCEEEEEEECCCCCCHHHHH-HH-HHHHH---cC-------------CCEEEEEECcccCChHHHHHHHHHHHHHHcccC
Confidence 9999999999987776542 11 11211 12 89999999999976555432 22222 33234
Q ss_pred CCcEEEeccccCCC
Q psy1873 144 KAGFVEASAKQDDY 157 (157)
Q Consensus 144 ~~~~~e~Sa~~~~~ 157 (157)
+++++++||++|+|
T Consensus 168 ~~~~~~~Sa~~~~g 181 (195)
T 1svi_A 168 EDELILFSSETKKG 181 (195)
T ss_dssp TSEEEECCTTTCTT
T ss_pred CCceEEEEccCCCC
Confidence 57999999999986
No 121
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.90 E-value=1.2e-23 Score=149.42 Aligned_cols=135 Identities=18% Similarity=0.143 Sum_probs=101.5
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccce-EEEEEEECCeEEEEEEEeCCCCccCcC------chhhhc--cCCCEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENT-FVKTTRMNNQDYDLKLVDTAGQDEYSI------FPAQYS--MDIHGYV 71 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~~~~~i 71 (157)
+|++|||||||+++|++..+.....+++... ....+..++. .+.+||+||+..+.. +...++ ..+|+++
T Consensus 9 vG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi 86 (271)
T 3k53_A 9 VGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIV 86 (271)
T ss_dssp EECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEE
T ss_pred ECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEE
Confidence 6999999999999999887755555555533 3555666664 479999999998876 555666 6899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873 72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS 151 (157)
Q Consensus 72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 151 (157)
+|+|.++.+ ....|+.++..... .|+++++||+|+.+.+.+... ...+++.++++++++|
T Consensus 87 ~v~D~~~~~---~~~~~~~~~~~~~~----------------~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~S 146 (271)
T 3k53_A 87 DIVDSTCLM---RNLFLTLELFEMEV----------------KNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTN 146 (271)
T ss_dssp EEEEGGGHH---HHHHHHHHHHHTTC----------------CSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECB
T ss_pred EEecCCcch---hhHHHHHHHHhcCC----------------CCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEE
Confidence 999998863 33345555544321 899999999998654443332 7778889999999999
Q ss_pred cccCCC
Q psy1873 152 AKQDDY 157 (157)
Q Consensus 152 a~~~~~ 157 (157)
|++|+|
T Consensus 147 a~~g~g 152 (271)
T 3k53_A 147 AKKGEG 152 (271)
T ss_dssp GGGTBT
T ss_pred eCCCCC
Confidence 999986
No 122
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.89 E-value=6.6e-24 Score=151.07 Aligned_cols=134 Identities=16% Similarity=0.154 Sum_probs=97.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCcc-ceEEEEEEECCeEEEEEEEeCCCCccCcCc----------hhhh--ccCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIE-NTFVKTTRMNNQDYDLKLVDTAGQDEYSIF----------PAQY--SMDI 67 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~--~~~~ 67 (157)
+|++|||||||+|+|++..+.....+++. +.....+..++ ..+.+||+||+.++... ...+ ...+
T Consensus 9 vG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~ 86 (274)
T 3i8s_A 9 IGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDA 86 (274)
T ss_dssp EECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCC
T ss_pred ECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHHHhhcCC
Confidence 59999999999999998877544445444 33355555555 35688999999887732 2223 3789
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcE
Q psy1873 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGF 147 (157)
Q Consensus 68 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 147 (157)
|++|+|+|.++.++...+..+ +.+. . +|+++|+||+|+.+.+.+. .....+++.+|+++
T Consensus 87 d~ii~VvD~~~~~~~~~~~~~---l~~~----~-------------~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~ 145 (274)
T 3i8s_A 87 DLLINVVDASNLERNLYLTLQ---LLEL----G-------------IPCIVALNMLDIAEKQNIR-IEIDALSARLGCPV 145 (274)
T ss_dssp SEEEEEEEGGGHHHHHHHHHH---HHHH----T-------------CCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCE
T ss_pred CEEEEEecCCChHHHHHHHHH---HHhc----C-------------CCEEEEEECccchhhhhHH-HHHHHHHHhcCCCE
Confidence 999999999987655444333 3333 2 9999999999986544332 23567888899999
Q ss_pred EEeccccCCC
Q psy1873 148 VEASAKQDDY 157 (157)
Q Consensus 148 ~e~Sa~~~~~ 157 (157)
+++||++|+|
T Consensus 146 i~~SA~~g~g 155 (274)
T 3i8s_A 146 IPLVSTRGRG 155 (274)
T ss_dssp EECCCGGGHH
T ss_pred EEEEcCCCCC
Confidence 9999999875
No 123
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=1e-23 Score=158.87 Aligned_cols=137 Identities=21% Similarity=0.119 Sum_probs=94.7
Q ss_pred CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCc----------cCcCchh-hhccCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQD----------EYSIFPA-QYSMDI 67 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~-~~~~~~ 67 (157)
||.+|||||||+|+|++..+ ...+..|+.+.+...+..++.. +.+|||+|+. .|..++. .+++.+
T Consensus 181 vG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~a 258 (436)
T 2hjg_A 181 IGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRS 258 (436)
T ss_dssp ECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHC
T ss_pred EcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHHHHHHHHhC
Confidence 69999999999999998776 3344444445456666777754 7899999973 3333333 477889
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHH-----HHHH
Q psy1873 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKR-----LAES 142 (157)
Q Consensus 68 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~-----~~~~ 142 (157)
|++++|+|++++.+++.. .|+..+... . .|+++|+||+|+.+.+....++... ++..
T Consensus 259 d~~llv~D~~~~~s~~~~-~~~~~~~~~----~-------------~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~ 320 (436)
T 2hjg_A 259 EVVAVVLDGEEGIIEQDK-RIAGYAHEA----G-------------KAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL 320 (436)
T ss_dssp SEEEEEEETTTCCCHHHH-HHHHHHHHT----T-------------CEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGG
T ss_pred CEEEEEEcCCcCCcHHHH-HHHHHHHHc----C-------------CcEEEEEECccCCCcchHHHHHHHHHHHHhcccC
Confidence 999999999998888776 455554432 2 9999999999997655544333322 2222
Q ss_pred hCCcEEEeccccCCC
Q psy1873 143 WKAGFVEASAKQDDY 157 (157)
Q Consensus 143 ~~~~~~e~Sa~~~~~ 157 (157)
.+++++++||++|+|
T Consensus 321 ~~~~~~~~SA~tg~~ 335 (436)
T 2hjg_A 321 DYAPILFMSALTKKR 335 (436)
T ss_dssp TTSCEEECCTTTCTT
T ss_pred CCCCEEEEecccCCC
Confidence 368999999999986
No 124
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.88 E-value=1e-22 Score=154.45 Aligned_cols=136 Identities=16% Similarity=0.094 Sum_probs=81.5
Q ss_pred CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCch--------hhhccCCCEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP--------AQYSMDIHGY 70 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~~~~~~~ 70 (157)
+|++|||||||+|+|++... ...+..|+.+.+...+.+++ +.+.+|||+|+.++...+ ..+++.+|++
T Consensus 239 vG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~v 316 (476)
T 3gee_A 239 AGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLI 316 (476)
T ss_dssp ECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCCSSCSEE
T ss_pred ECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEE
Confidence 69999999999999998753 34444454455566677777 568999999998766443 3468899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEe
Q psy1873 71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEA 150 (157)
Q Consensus 71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 150 (157)
++|+|.+++.+++++..+. .++.... . .|+++|+||+|+....... .+.+.+....+++++
T Consensus 317 l~VvD~s~~~s~~~~~~~~-~~l~~l~--~-------------~piIvV~NK~Dl~~~~~~~---~~~l~~~~~~~~i~v 377 (476)
T 3gee_A 317 LYLLDLGTERLDDELTEIR-ELKAAHP--A-------------AKFLTVANKLDRAANADAL---IRAIADGTGTEVIGI 377 (476)
T ss_dssp EEEEETTTCSSGGGHHHHH-HHHHHCT--T-------------SEEEEEEECTTSCTTTHHH---HHHHHHHHTSCEEEC
T ss_pred EEEEECCCCcchhhhHHHH-HHHHhcC--C-------------CCEEEEEECcCCCCccchh---HHHHHhcCCCceEEE
Confidence 9999999998876433322 2222222 2 8999999999997655442 233444434789999
Q ss_pred ccccCCC
Q psy1873 151 SAKQDDY 157 (157)
Q Consensus 151 Sa~~~~~ 157 (157)
||++|+|
T Consensus 378 SAktg~G 384 (476)
T 3gee_A 378 SALNGDG 384 (476)
T ss_dssp BTTTTBS
T ss_pred EECCCCC
Confidence 9999986
No 125
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.88 E-value=4.1e-23 Score=156.34 Aligned_cols=137 Identities=22% Similarity=0.153 Sum_probs=98.9
Q ss_pred CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCC----------CccCcCchhh-hccCC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAG----------QDEYSIFPAQ-YSMDI 67 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~~~-~~~~~ 67 (157)
+|.+|||||||+++|++... ...+..++.+.+...+..++. .+.+|||+| ++.|..+... +++.+
T Consensus 201 vG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~a 278 (456)
T 4dcu_A 201 IGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRS 278 (456)
T ss_dssp ECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHC
T ss_pred ecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhC
Confidence 69999999999999997642 334444444444566677775 578999999 6666666554 78899
Q ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh----
Q psy1873 68 HGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESW---- 143 (157)
Q Consensus 68 ~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~---- 143 (157)
|++|+|+|.++... +....|+..+.. .. .|++||+||+|+.+.+.+..++....++..
T Consensus 279 d~~llviD~~~~~~-~~~~~~~~~~~~----~~-------------~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 340 (456)
T 4dcu_A 279 EVVAVVLDGEEGII-EQDKRIAGYAHE----AG-------------KAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL 340 (456)
T ss_dssp SEEEEEEETTTCCC-HHHHHHHHHHHH----TT-------------CEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGG
T ss_pred CEEEEEEeCCCCcC-HHHHHHHHHHHH----cC-------------CCEEEEEEChhcCCCchHHHHHHHHHHHHhcccC
Confidence 99999999987543 222334443333 12 899999999999877777777777777665
Q ss_pred -CCcEEEeccccCCC
Q psy1873 144 -KAGFVEASAKQDDY 157 (157)
Q Consensus 144 -~~~~~e~Sa~~~~~ 157 (157)
+++++++||++|+|
T Consensus 341 ~~~~~~~~SA~~g~g 355 (456)
T 4dcu_A 341 DYAPILFMSALTKKR 355 (456)
T ss_dssp TTSCEEECCTTTCTT
T ss_pred CCCCEEEEcCCCCcC
Confidence 58999999999986
No 126
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.88 E-value=2.5e-23 Score=140.31 Aligned_cols=133 Identities=17% Similarity=0.137 Sum_probs=92.7
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEE-EEEECCeEEEEEEEeCCC----------CccCcCchhhhccCC--
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVK-TTRMNNQDYDLKLVDTAG----------QDEYSIFPAQYSMDI-- 67 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g----------~~~~~~~~~~~~~~~-- 67 (157)
+|++|||||||+++|++..+ ..+.++.+..... ....+ ..+.+||++| ++.+..++..+++.+
T Consensus 29 ~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (195)
T 3pqc_A 29 VGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVN---SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWS 104 (195)
T ss_dssp EEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEET---TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred ECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEEC---CcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcC
Confidence 69999999999999998873 2333444433322 22222 2467999999 566777777777766
Q ss_pred -CEEEEEEECCChhhH--HHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC--ceecHHHHHHHHHH
Q psy1873 68 -HGYVLVYSITSHKSF--EVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME--RMISYDEGKRLAES 142 (157)
Q Consensus 68 -~~~ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~--~~~~~~~~~~~~~~ 142 (157)
+++++|+|.++..+. ..+..|+... . .|+++|+||+|+.+. .....++...++..
T Consensus 105 ~~~vi~v~d~~~~~~~~~~~~~~~~~~~-------~-------------~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~ 164 (195)
T 3pqc_A 105 LQMVFLLVDGRIPPQDSDLMMVEWMKSL-------N-------------IPFTIVLTKMDKVKMSERAKKLEEHRKVFSK 164 (195)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHHHHT-------T-------------CCEEEEEECGGGSCGGGHHHHHHHHHHHHHS
T ss_pred ceEEEEEecCCCCCCHHHHHHHHHHHHc-------C-------------CCEEEEEEChhcCChHHHHHHHHHHHHHHhh
Confidence 899999999876433 3333443322 2 999999999998643 34445566677766
Q ss_pred hC-CcEEEeccccCCC
Q psy1873 143 WK-AGFVEASAKQDDY 157 (157)
Q Consensus 143 ~~-~~~~e~Sa~~~~~ 157 (157)
.+ ++++++||++|+|
T Consensus 165 ~~~~~~~~~Sa~~~~g 180 (195)
T 3pqc_A 165 YGEYTIIPTSSVTGEG 180 (195)
T ss_dssp SCCSCEEECCTTTCTT
T ss_pred cCCCceEEEecCCCCC
Confidence 44 7999999999986
No 127
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.88 E-value=2.2e-22 Score=144.88 Aligned_cols=135 Identities=22% Similarity=0.168 Sum_probs=90.4
Q ss_pred CCCCCCChhhhHhhhhcccccc--cccCCccceEEEEEEECCeEEEEEEEeCCCCccC--------cCchhhhccCCCEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVD--SYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY--------SIFPAQYSMDIHGY 70 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--------~~~~~~~~~~~~~~ 70 (157)
||.+|||||||+|+|++.++.. ....|+..........+ ...+.+|||||..+. ......+++.+|++
T Consensus 13 vG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~i 90 (301)
T 1wf3_A 13 VGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAV 90 (301)
T ss_dssp ECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEE
T ss_pred ECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEE
Confidence 6999999999999999987742 22234333333333333 467899999998764 33455678999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHHHhC-CcEE
Q psy1873 71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM-ISYDEGKRLAESWK-AGFV 148 (157)
Q Consensus 71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~-~~~~~~~~~~~~~~-~~~~ 148 (157)
++|+|++++.+.. ..|+...+..... . .|+++|+||+|+..... + .+.+..+ .+ .+++
T Consensus 91 l~VvD~~~~~~~~--~~~i~~~l~~~~~-~-------------~p~ilV~NK~Dl~~~~~~~-~~~~~~~---~~~~~~~ 150 (301)
T 1wf3_A 91 VWVVDLRHPPTPE--DELVARALKPLVG-K-------------VPILLVGNKLDAAKYPEEA-MKAYHEL---LPEAEPR 150 (301)
T ss_dssp EEEEETTSCCCHH--HHHHHHHHGGGTT-T-------------SCEEEEEECGGGCSSHHHH-HHHHHHT---STTSEEE
T ss_pred EEEEECCCCCChH--HHHHHHHHHhhcC-C-------------CCEEEEEECcccCCchHHH-HHHHHHh---cCcCcEE
Confidence 9999999875433 3455443333211 2 99999999999865433 2 1222222 23 4799
Q ss_pred EeccccCCC
Q psy1873 149 EASAKQDDY 157 (157)
Q Consensus 149 e~Sa~~~~~ 157 (157)
++||++|+|
T Consensus 151 ~iSA~~g~g 159 (301)
T 1wf3_A 151 MLSALDERQ 159 (301)
T ss_dssp ECCTTCHHH
T ss_pred EEeCCCCCC
Confidence 999998864
No 128
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.87 E-value=1.6e-22 Score=145.66 Aligned_cols=124 Identities=15% Similarity=0.128 Sum_probs=103.8
Q ss_pred hhHhhhhccccc-ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh-hHHHHHH
Q psy1873 10 SLSIQFVDGQFV-DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK-SFEVVQI 87 (157)
Q Consensus 10 sli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~-s~~~~~~ 87 (157)
+|+.+++.+.|. ..+.||+++.+...+..++ .+++||+ +++|..+++.+++++|++|+|||++++. +++.+..
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~ 106 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDK 106 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHH
Confidence 789999999998 8899999977654433333 6799999 9999999999999999999999999998 7888999
Q ss_pred HHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CcEEEeccccCCC
Q psy1873 88 LYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK--AGFVEASAKQDDY 157 (157)
Q Consensus 88 ~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~~ 157 (157)
|+..+... . +|++||+||+|+.+.+.+ +++..+++.++ +++++|||++|+|
T Consensus 107 ~l~~~~~~----~-------------~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~g 159 (301)
T 1u0l_A 107 FLVLAEKN----E-------------LETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMG 159 (301)
T ss_dssp HHHHHHHT----T-------------CEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTT
T ss_pred HHHHHHHC----C-------------CCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcC
Confidence 98866431 2 999999999999765443 55777888888 8999999999986
No 129
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.87 E-value=3.2e-21 Score=141.84 Aligned_cols=138 Identities=19% Similarity=0.164 Sum_probs=99.8
Q ss_pred CCCCCCChhhhHhhhhcccccc-cccCCccceEEEEEEECCeEEEEEEEeCCCCccCcC---------chhhhccCCCEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVD-SYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSI---------FPAQYSMDIHGY 70 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~~~~~~~~ 70 (157)
+|++|||||||+++|++..+.. .+..+........+..+ ...+.+|||+|...... ....+...+|++
T Consensus 173 vG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~i 250 (357)
T 2e87_A 173 AGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLI 250 (357)
T ss_dssp ECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEE
T ss_pred ECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEE
Confidence 6999999999999999876532 22222222222333333 35689999999865432 111344568999
Q ss_pred EEEEECCChh--hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEE
Q psy1873 71 VLVYSITSHK--SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFV 148 (157)
Q Consensus 71 ilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (157)
++|+|++++. +++....|+..+..... . .|+++|+||+|+.....+ +++..++...+++++
T Consensus 251 llV~D~s~~~~~~~~~~~~~~~~i~~~~~--~-------------~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~ 313 (357)
T 2e87_A 251 IYIFDPSEHCGFPLEEQIHLFEEVHGEFK--D-------------LPFLVVINKIDVADEENI--KRLEKFVKEKGLNPI 313 (357)
T ss_dssp EEEECTTCTTSSCHHHHHHHHHHHHHHTT--T-------------SCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCE
T ss_pred EEEEeCCccccCCHHHHHHHHHHHHHhcC--C-------------CCEEEEEECcccCChHHH--HHHHHHHHhcCCCeE
Confidence 9999999887 77888888888876543 2 999999999999664433 456667778889999
Q ss_pred EeccccCCC
Q psy1873 149 EASAKQDDY 157 (157)
Q Consensus 149 e~Sa~~~~~ 157 (157)
++||++|+|
T Consensus 314 ~iSA~~g~g 322 (357)
T 2e87_A 314 KISALKGTG 322 (357)
T ss_dssp ECBTTTTBT
T ss_pred EEeCCCCcC
Confidence 999999986
No 130
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.87 E-value=1e-22 Score=152.27 Aligned_cols=134 Identities=23% Similarity=0.251 Sum_probs=95.2
Q ss_pred CCCCCCChhhhHhhhhccccc--ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCch-------hhhccCCCEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP-------AQYSMDIHGYV 71 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------~~~~~~~~~~i 71 (157)
+|..|+|||||+++|++..+. ..+..++.+.....+.+.+.. .+.+|||+|+.++..+. ..++..+|++|
T Consensus 40 vG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vl 118 (423)
T 3qq5_A 40 AGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGI 118 (423)
T ss_dssp ECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEE
T ss_pred ECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEE
Confidence 699999999999999988762 233333334445666666543 68999999999887663 34788999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873 72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS 151 (157)
Q Consensus 72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 151 (157)
+|+|++..+. ...|+..+.+. . +|+++|+||+|+...+.. +....+++.++++++++|
T Consensus 119 lVvD~~~~~~---~~~~l~~l~~~----~-------------~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vS 176 (423)
T 3qq5_A 119 LVTDSAPTPY---EDDVVNLFKEM----E-------------IPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVS 176 (423)
T ss_dssp EECSSSCCHH---HHHHHHHHHHT----T-------------CCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCS
T ss_pred EEEeCCChHH---HHHHHHHHHhc----C-------------CCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEE
Confidence 9999843333 34555555444 2 999999999999765544 667777788899999999
Q ss_pred cccCCC
Q psy1873 152 AKQDDY 157 (157)
Q Consensus 152 a~~~~~ 157 (157)
|++|+|
T Consensus 177 Aktg~g 182 (423)
T 3qq5_A 177 ALQKKG 182 (423)
T ss_dssp SCCTTS
T ss_pred CCCCCC
Confidence 999986
No 131
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.6e-22 Score=136.39 Aligned_cols=113 Identities=19% Similarity=0.266 Sum_probs=84.7
Q ss_pred CCCCCCChhhhHhhhhcccccc---cccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccC----CCEEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVD---SYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMD----IHGYVLV 73 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~----~~~~ilv 73 (157)
+|++|||||||+++|++..+.. .+.+++.. +...+.+.+||++|+..+...+..++.. +|++|+|
T Consensus 54 vG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v 125 (193)
T 2ged_A 54 AGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA--------DYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM 125 (193)
T ss_dssp ECCTTSSHHHHHHHHHHSSCC--------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEE
T ss_pred ECCCCCCHHHHHHHHhcCCCCcccccCCCceee--------eecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEE
Confidence 6999999999999999877643 22222221 1134678999999999998888888776 8999999
Q ss_pred EECC-ChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCcee
Q psy1873 74 YSIT-SHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMI 131 (157)
Q Consensus 74 ~d~~-~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~ 131 (157)
||++ ++++++.+..|+..++....... ...+|+++|+||+|+.+.+.+
T Consensus 126 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~p~ilv~nK~Dl~~~~~~ 174 (193)
T 2ged_A 126 VDSTVDPKKLTTTAEFLVDILSITESSC----------ENGIDILIACNKSELFTARPP 174 (193)
T ss_dssp EETTCCHHHHHHHHHHHHHHHHHHHHHS----------TTCCCEEEEEECTTSTTCCCH
T ss_pred EECCCCchhHHHHHHHHHHHHhhhhhcc----------ccCCCEEEEEEchHhcCCCCH
Confidence 9999 99999999999988887653200 012999999999999765543
No 132
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.87 E-value=2.3e-22 Score=146.82 Aligned_cols=140 Identities=16% Similarity=0.186 Sum_probs=102.3
Q ss_pred CCCCCCChhhhHhhhhccccc-ccccCCccceEEEEEEECCeEEEEEEEeCCCC----ccCcCchhhhccC---CCEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV-DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQ----DEYSIFPAQYSMD---IHGYVL 72 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~----~~~~~~~~~~~~~---~~~~il 72 (157)
||.+|||||||+++|++.+.. ..+..++.......+.+++. ..+.+||++|. ..+..+...+++. ++++|+
T Consensus 164 vG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~ 242 (342)
T 1lnz_A 164 VGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVH 242 (342)
T ss_dssp ESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEE
T ss_pred eCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEE
Confidence 699999999999999987642 33333332222333455442 36899999995 4555666667665 999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhC--CcE
Q psy1873 73 VYSITS---HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWK--AGF 147 (157)
Q Consensus 73 v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~ 147 (157)
|+|+++ +++++.+..|+.++...... +...|++||+||+|+...+ +....+++.++ +++
T Consensus 243 VvD~s~~~~~~~~~~~~~~~~eL~~~~~~------------l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v 306 (342)
T 1lnz_A 243 VIDMSGLEGRDPYDDYLTINQELSEYNLR------------LTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPV 306 (342)
T ss_dssp EEESSCSSCCCHHHHHHHHHHHHHHSCSS------------TTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCB
T ss_pred EEECCcccccChHHHHHHHHHHHHHhhhh------------hcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCE
Confidence 999998 78899998888888765421 1239999999999986532 34666777776 789
Q ss_pred EEeccccCCC
Q psy1873 148 VEASAKQDDY 157 (157)
Q Consensus 148 ~e~Sa~~~~~ 157 (157)
+++||++++|
T Consensus 307 ~~iSA~tg~g 316 (342)
T 1lnz_A 307 FPISAVTREG 316 (342)
T ss_dssp CCCSSCCSST
T ss_pred EEEECCCCcC
Confidence 9999999986
No 133
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.86 E-value=9.2e-22 Score=148.30 Aligned_cols=133 Identities=22% Similarity=0.166 Sum_probs=87.6
Q ss_pred CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccC---------cCchhhhccCCCE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY---------SIFPAQYSMDIHG 69 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~~~~~ 69 (157)
||.+|||||||+|+|++.+. ...+..++.+.....+.+++.. +.+|||+|++.. ......+++++|+
T Consensus 7 vG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~ 84 (439)
T 1mky_A 7 VGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMIREADL 84 (439)
T ss_dssp ECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSE
T ss_pred ECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHHHhCCE
Confidence 69999999999999998764 2333333334446667777754 688999998753 2345668999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHH-HHHHHHhCC-cE
Q psy1873 70 YVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEG-KRLAESWKA-GF 147 (157)
Q Consensus 70 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~ 147 (157)
+|+|+|+++..+... .++..++... . +|+++|+||+|+... . ..+. ..+. .+++ ++
T Consensus 85 il~V~D~~~~~~~~d--~~i~~~l~~~---~-------------~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~ 142 (439)
T 1mky_A 85 VLFVVDGKRGITKED--ESLADFLRKS---T-------------VDTILVANKAENLRE--F-EREVKPELY-SLGFGEP 142 (439)
T ss_dssp EEEEEETTTCCCHHH--HHHHHHHHHH---T-------------CCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSC
T ss_pred EEEEEECCCCCCHHH--HHHHHHHHHc---C-------------CCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCE
Confidence 999999987644332 2333333332 2 899999999998432 1 1223 3443 5677 79
Q ss_pred EEeccccCCC
Q psy1873 148 VEASAKQDDY 157 (157)
Q Consensus 148 ~e~Sa~~~~~ 157 (157)
+++||++|+|
T Consensus 143 ~~iSA~~g~g 152 (439)
T 1mky_A 143 IPVSAEHNIN 152 (439)
T ss_dssp EECBTTTTBS
T ss_pred EEEeccCCCC
Confidence 9999999986
No 134
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.86 E-value=7.6e-22 Score=149.78 Aligned_cols=132 Identities=21% Similarity=0.168 Sum_probs=96.7
Q ss_pred CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCc-cCcC--------chhhhccCCCE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQD-EYSI--------FPAQYSMDIHG 69 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~~~~~~~~ 69 (157)
+|.+|||||||+|+|++..+ ...+..|+.+.....+.+++ ..+.+|||+|.. .+.. ....+++.+|+
T Consensus 249 vG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~ 326 (482)
T 1xzp_A 249 VGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADI 326 (482)
T ss_dssp ECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSE
T ss_pred ECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHHhhcccE
Confidence 69999999999999998754 44555555555566777777 457999999987 6543 13457889999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEE
Q psy1873 70 YVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVE 149 (157)
Q Consensus 70 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e 149 (157)
+|+|+|++++.+++... ++.. .. . .|+++|+||+|+.+. +..++...++. .++++++
T Consensus 327 vl~VvD~s~~~s~~~~~-il~~----l~--~-------------~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~ 383 (482)
T 1xzp_A 327 VLFVLDASSPLDEEDRK-ILER----IK--N-------------KRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVK 383 (482)
T ss_dssp EEEEEETTSCCCHHHHH-HHHH----HT--T-------------SSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEE
T ss_pred EEEEecCCCCCCHHHHH-HHHH----hc--C-------------CCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEE
Confidence 99999999988876542 2222 21 2 899999999999643 34444544432 3479999
Q ss_pred eccccCCC
Q psy1873 150 ASAKQDDY 157 (157)
Q Consensus 150 ~Sa~~~~~ 157 (157)
+||++|+|
T Consensus 384 iSAktg~G 391 (482)
T 1xzp_A 384 ISALKGEG 391 (482)
T ss_dssp EEGGGTCC
T ss_pred EECCCCCC
Confidence 99999986
No 135
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.86 E-value=1.2e-22 Score=139.95 Aligned_cols=139 Identities=14% Similarity=0.068 Sum_probs=85.8
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEEC-CeEEEEEEEeCCCCc----------cCcCchhhhccC--
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMN-NQDYDLKLVDTAGQD----------EYSIFPAQYSMD-- 66 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~D~~g~~----------~~~~~~~~~~~~-- 66 (157)
+|.+|||||||+++|++..+......+.+... .....+. .....+.+|||+|.. .+..+...+++.
T Consensus 35 ~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (223)
T 4dhe_A 35 AGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRP 114 (223)
T ss_dssp EESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCT
T ss_pred EcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCc
Confidence 69999999999999998863222112222111 2222333 334678999999943 334455566655
Q ss_pred -CCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec--HHHHHHHHHH-
Q psy1873 67 -IHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS--YDEGKRLAES- 142 (157)
Q Consensus 67 -~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~--~~~~~~~~~~- 142 (157)
+|++++|+|.+++.+.. ...++..+.. .. .|+++|+||+|+.....+. .++.......
T Consensus 115 ~~d~vi~v~d~~~~~~~~-~~~~~~~l~~----~~-------------~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~ 176 (223)
T 4dhe_A 115 QLCGMILMMDARRPLTEL-DRRMIEWFAP----TG-------------KPIHSLLTKCDKLTRQESINALRATQKSLDAY 176 (223)
T ss_dssp TEEEEEEEEETTSCCCHH-HHHHHHHHGG----GC-------------CCEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred CcCEEEEEEeCCCCCCHH-HHHHHHHHHh----cC-------------CCEEEEEeccccCChhhHHHHHHHHHHHHHhh
Confidence 67899999998753321 2223333322 22 8999999999986644321 1222222332
Q ss_pred ------hCCcEEEeccccCCC
Q psy1873 143 ------WKAGFVEASAKQDDY 157 (157)
Q Consensus 143 ------~~~~~~e~Sa~~~~~ 157 (157)
.+++++++||++|+|
T Consensus 177 ~~~~~~~~~~~~~~SA~~g~g 197 (223)
T 4dhe_A 177 RDAGYAGKLTVQLFSALKRTG 197 (223)
T ss_dssp HHHTCCSCEEEEEEBTTTTBS
T ss_pred hhcccCCCCeEEEeecCCCcC
Confidence 456999999999986
No 136
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.85 E-value=2.3e-22 Score=148.07 Aligned_cols=140 Identities=19% Similarity=0.173 Sum_probs=80.3
Q ss_pred CCCCCCChhhhHhhhhcc-ccccccc--------CCccceE-EEEEEECCeEEEEEEEeCCCC-------ccCcCchh--
Q psy1873 1 MGYRSVGKSSLSIQFVDG-QFVDSYD--------PTIENTF-VKTTRMNNQDYDLKLVDTAGQ-------DEYSIFPA-- 61 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~-~~~~~~~--------~t~~~~~-~~~~~~~~~~~~~~i~D~~g~-------~~~~~~~~-- 61 (157)
||++|+|||||++++.+. .+...+. +|++..+ ...+..++....+.+||++|+ +.+..+..
T Consensus 43 vG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i 122 (361)
T 2qag_A 43 VGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYI 122 (361)
T ss_dssp CCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHH
T ss_pred EcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHH
Confidence 799999999999997654 3333322 3444322 333344566778999999998 77777776
Q ss_pred -----hhccCCCE-----------EEEEEECCC-hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCC
Q psy1873 62 -----QYSMDIHG-----------YVLVYSITS-HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKD 124 (157)
Q Consensus 62 -----~~~~~~~~-----------~ilv~d~~~-~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~D 124 (157)
.+++.+++ .+++|++++ ..++..+...+... ... . +|+++|+||+|
T Consensus 123 ~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~---l~~-~-------------~piIlV~NK~D 185 (361)
T 2qag_A 123 DEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKA---IHN-K-------------VNIVPVIAKAD 185 (361)
T ss_dssp HHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHH---TCS---------------SCEEEEEECCS
T ss_pred HHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHH---hcc-C-------------CCEEEEEECCC
Confidence 55554443 357777776 56666665322222 222 2 99999999999
Q ss_pred CCCCceecH--HHHHHHHHHhCCcEEEeccccCCC
Q psy1873 125 LHMERMISY--DEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 125 l~~~~~~~~--~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+...+.+.. .++..++..++++++++||++|+|
T Consensus 186 l~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~ 220 (361)
T 2qag_A 186 TLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE 220 (361)
T ss_dssp SSCHHHHHHHHHHHHHHTTCC-CCSCCCC------
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc
Confidence 977666554 567778888899999999999864
No 137
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.84 E-value=2.3e-20 Score=134.37 Aligned_cols=136 Identities=21% Similarity=0.148 Sum_probs=92.8
Q ss_pred CCCCCCChhhhHhhhhccccc--ccccCCccceEEEEEEECCeEEEEEEEeCCCCc---------cCcCchhhhccCCCE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQD---------EYSIFPAQYSMDIHG 69 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~~~~~~~ 69 (157)
||++|||||||++++++..+. .....++.......+..++ ..+.+|||+|.. .+.......++.+|+
T Consensus 14 vG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~ 91 (301)
T 1ega_A 14 VGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVEL 91 (301)
T ss_dssp ECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEE
T ss_pred ECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCE
Confidence 699999999999999988763 2222233332233333343 568899999987 233445677889999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEE
Q psy1873 70 YVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFV 148 (157)
Q Consensus 70 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~ 148 (157)
+++|+|.++ +.....|+...+.. .. .|+++++||+|+...+....+....++..++. .++
T Consensus 92 vl~Vvd~~~---~~~~~~~i~~~l~~---~~-------------~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i 152 (301)
T 1ega_A 92 VIFVVEGTR---WTPDDEMVLNKLRE---GK-------------APVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIV 152 (301)
T ss_dssp EEEEEETTC---CCHHHHHHHHHHHS---SS-------------SCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEE
T ss_pred EEEEEeCCC---CCHHHHHHHHHHHh---cC-------------CCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceE
Confidence 999999977 33333454443322 12 89999999999865333333455666666776 799
Q ss_pred EeccccCCC
Q psy1873 149 EASAKQDDY 157 (157)
Q Consensus 149 e~Sa~~~~~ 157 (157)
++||++|+|
T Consensus 153 ~iSA~~g~~ 161 (301)
T 1ega_A 153 PISAETGLN 161 (301)
T ss_dssp ECCTTTTTT
T ss_pred EEECCCCCC
Confidence 999999976
No 138
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.83 E-value=3.2e-21 Score=146.84 Aligned_cols=141 Identities=13% Similarity=0.065 Sum_probs=88.2
Q ss_pred CCCCCCChhhhHhhhhcccc--cc-----------------------------cccCCccceEEEEEEECCeEEEEEEEe
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--VD-----------------------------SYDPTIENTFVKTTRMNNQDYDLKLVD 49 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~~i~D 49 (157)
+|.+++|||||+++|+.... .. .....+... .....++.....+.+||
T Consensus 39 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~-~~~~~~~~~~~~~~iiD 117 (483)
T 3p26_A 39 LGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVS-ICTSHFSTHRANFTIVD 117 (483)
T ss_dssp ESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCC-CCEEEEECSSCEEEEEC
T ss_pred ECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceE-eeeEEEecCCceEEEEE
Confidence 69999999999999976511 10 000011100 11122333456789999
Q ss_pred CCCCccCcCchhhhccCCCEEEEEEECCChhhHHHH-----HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCC
Q psy1873 50 TAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVV-----QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKD 124 (157)
Q Consensus 50 ~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~D 124 (157)
++|+++|......++..+|++|+|+|+++..++..+ ..++..+..... . .|++||+||+|
T Consensus 118 TPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~--~-------------~~iIvviNK~D 182 (483)
T 3p26_A 118 APGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG--I-------------HNLIIAMNKMD 182 (483)
T ss_dssp CCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT--C-------------CCEEEEEECGG
T ss_pred CCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC--C-------------CcEEEEEECcC
Confidence 999999999999999999999999999987654321 112222222221 1 56999999999
Q ss_pred CCCCceecHHHH----HHHHHHh-----CCcEEEeccccCCC
Q psy1873 125 LHMERMISYDEG----KRLAESW-----KAGFVEASAKQDDY 157 (157)
Q Consensus 125 l~~~~~~~~~~~----~~~~~~~-----~~~~~e~Sa~~~~~ 157 (157)
+.+.++...++. ..+.... +++++++||++|+|
T Consensus 183 l~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~g 224 (483)
T 3p26_A 183 NVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEG 224 (483)
T ss_dssp GGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTT
T ss_pred cccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCC
Confidence 976444333333 3333333 46899999999987
No 139
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.83 E-value=1.3e-20 Score=142.09 Aligned_cols=137 Identities=23% Similarity=0.151 Sum_probs=88.4
Q ss_pred CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCch------------hhhccC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP------------AQYSMD 66 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~------------~~~~~~ 66 (157)
||++|||||||+|++++... ...+..++.+.....+.+++. .+.+||++|..++.... ..+++.
T Consensus 186 vG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ 263 (439)
T 1mky_A 186 VGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEK 263 (439)
T ss_dssp ECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHHHHHHHhh
Confidence 69999999999999998765 334444444444566778886 46889999975433221 235678
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHH-----HHH
Q psy1873 67 IHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKR-----LAE 141 (157)
Q Consensus 67 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~-----~~~ 141 (157)
+|++++++|.++..+.+.. ++...+... . .|+++++||+|+.+.+....++... +..
T Consensus 264 ad~vllv~d~~~~~~~~~~--~i~~~l~~~---~-------------~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 325 (439)
T 1mky_A 264 ADVVVIVLDATQGITRQDQ--RMAGLMERR---G-------------RASVVVFNKWDLVVHREKRYDEFTKLFREKLYF 325 (439)
T ss_dssp CSEEEEEEETTTCCCHHHH--HHHHHHHHT---T-------------CEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGG
T ss_pred CCEEEEEEeCCCCCCHHHH--HHHHHHHHc---C-------------CCEEEEEECccCCCchhhHHHHHHHHHHHHhcc
Confidence 8999999999987665542 222332222 2 8999999999987655443333322 222
Q ss_pred HhCCcEEEeccccCCC
Q psy1873 142 SWKAGFVEASAKQDDY 157 (157)
Q Consensus 142 ~~~~~~~e~Sa~~~~~ 157 (157)
..+++++++||++|.|
T Consensus 326 ~~~~~~~~~SA~~g~g 341 (439)
T 1mky_A 326 IDYSPLIFTSADKGWN 341 (439)
T ss_dssp GTTSCEEECBTTTTBS
T ss_pred CCCCcEEEEECCCCCC
Confidence 3357999999999986
No 140
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.83 E-value=1.1e-20 Score=138.52 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=92.5
Q ss_pred CCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC----------hhhHHHHHHHHHHHHHH
Q psy1873 26 PTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS----------HKSFEVVQILYDKLLDM 95 (157)
Q Consensus 26 ~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~ 95 (157)
+|+|.. ...+.++ .+.+++||++||++++.+|..++++++++|+|||+++ .+++++...|+..+...
T Consensus 179 ~T~Gi~-~~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~ 255 (353)
T 1cip_A 179 KTTGIV-ETHFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN 255 (353)
T ss_dssp CCCSEE-EEEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred ceeceE-EEEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC
Confidence 444422 2344554 4789999999999999999999999999999999999 56799999999998875
Q ss_pred hccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc---------------eecHHHHHHHHH-----------HhCCcEEE
Q psy1873 96 TGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER---------------MISYDEGKRLAE-----------SWKAGFVE 149 (157)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~---------------~~~~~~~~~~~~-----------~~~~~~~e 149 (157)
..... +|++|+|||+|+...+ .++.+++..++. ..++.+++
T Consensus 256 ~~~~~-------------~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~e 322 (353)
T 1cip_A 256 KWFTD-------------TSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHF 322 (353)
T ss_dssp GGGTT-------------SEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEE
T ss_pred ccccC-------------CcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEE
Confidence 43233 9999999999985332 367788888887 35679999
Q ss_pred eccccCCC
Q psy1873 150 ASAKQDDY 157 (157)
Q Consensus 150 ~Sa~~~~~ 157 (157)
|||++++|
T Consensus 323 tSA~~~~n 330 (353)
T 1cip_A 323 TCATDTKN 330 (353)
T ss_dssp CCTTCHHH
T ss_pred EECcCchh
Confidence 99999865
No 141
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.82 E-value=4.9e-21 Score=144.75 Aligned_cols=131 Identities=23% Similarity=0.207 Sum_probs=83.9
Q ss_pred CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchh--------hhccCCCEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPA--------QYSMDIHGY 70 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~--------~~~~~~~~~ 70 (157)
+|++|||||||+|+|++..+ ......|..+.....+.+++. .+.+|||+|..++..... .+++.+|++
T Consensus 230 vG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~v 307 (462)
T 3geh_A 230 VGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQAANTADLV 307 (462)
T ss_dssp EECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------------------CCCCSCSEE
T ss_pred EcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhhhhcCCEE
Confidence 69999999999999998754 333334444444555667774 568999999866554332 367889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEe
Q psy1873 71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEA 150 (157)
Q Consensus 71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 150 (157)
++|+|.+++.+.+. ..|+..+ .. .|+++|+||+|+.....+. ....+. .+.+++++
T Consensus 308 l~VvD~s~~~~~~~-~~i~~~l----~~---------------~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~i 363 (462)
T 3geh_A 308 LLTIDAATGWTTGD-QEIYEQV----KH---------------RPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHT 363 (462)
T ss_dssp EEEEETTTCSCHHH-HHHHHHH----TT---------------SCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEE
T ss_pred EEEeccCCCCCHHH-HHHHHhc----cC---------------CcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEE
Confidence 99999998766544 3333332 11 7899999999997654443 111111 35689999
Q ss_pred ccccCCC
Q psy1873 151 SAKQDDY 157 (157)
Q Consensus 151 Sa~~~~~ 157 (157)
||++|+|
T Consensus 364 SAktg~G 370 (462)
T 3geh_A 364 AAAQKQG 370 (462)
T ss_dssp BTTTTBS
T ss_pred ECCCCCC
Confidence 9999986
No 142
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.82 E-value=1.6e-21 Score=146.89 Aligned_cols=132 Identities=19% Similarity=0.131 Sum_probs=82.2
Q ss_pred CCCCCCChhhhHhhhhccccc--ccccCCccceEEEEEEECCeEEEEEEEeCCCCc--------cCcCchhhhccCCCEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQD--------EYSIFPAQYSMDIHGY 70 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~~~~~ 70 (157)
||.+|||||||+|+|++..+. .....++.+.....+.+++ ..+.+|||+|+. .+...+..+++.+|++
T Consensus 9 vG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~i 86 (436)
T 2hjg_A 9 VGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVI 86 (436)
T ss_dssp ECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHHHCSEE
T ss_pred ECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEE
Confidence 699999999999999987653 2222222232233333334 468999999986 4555677788999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEE
Q psy1873 71 VLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVE 149 (157)
Q Consensus 71 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e 149 (157)
|+|+|.+++.+... .|+..++... . .|+++|+||+|+...+. +...+. .+++ ++++
T Consensus 87 l~vvD~~~~~~~~d--~~~~~~l~~~---~-------------~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~ 143 (436)
T 2hjg_A 87 IFMVNGREGVTAAD--EEVAKILYRT---K-------------KPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYP 143 (436)
T ss_dssp EEEEETTTCSCHHH--HHHHHHHTTC---C-------------SCEEEEEECCCC---------CCCSSG-GGSSCCCEE
T ss_pred EEEEeCCCCCCHHH--HHHHHHHHHc---C-------------CCEEEEEECccCccchh----hHHHHH-HcCCCCeEE
Confidence 99999988766543 4454544321 2 89999999999864321 111222 4566 8999
Q ss_pred eccccCCC
Q psy1873 150 ASAKQDDY 157 (157)
Q Consensus 150 ~Sa~~~~~ 157 (157)
+||++|.|
T Consensus 144 iSA~~g~g 151 (436)
T 2hjg_A 144 ISGTHGLG 151 (436)
T ss_dssp CBTTTTBT
T ss_pred EeCcCCCC
Confidence 99999986
No 143
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.82 E-value=9.9e-20 Score=137.05 Aligned_cols=140 Identities=20% Similarity=0.140 Sum_probs=92.0
Q ss_pred CCCCCCChhhhHhhhhcccc---cc---------cccCCccceE--------------------EEEEEECCeEEEEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF---VD---------SYDPTIENTF--------------------VKTTRMNNQDYDLKLV 48 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~---~~---------~~~~t~~~~~--------------------~~~~~~~~~~~~~~i~ 48 (157)
+|..++|||||+++|++... .. ...+|++..+ .....+......+.+|
T Consensus 30 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~~~~ii 109 (434)
T 1zun_B 30 CGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIA 109 (434)
T ss_dssp ECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSEEEEEE
T ss_pred EECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCceEEEE
Confidence 69999999999999986531 10 0112211100 0111222334678999
Q ss_pred eCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q psy1873 49 DTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME 128 (157)
Q Consensus 49 D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~ 128 (157)
|+||+++|......++..+|++|+|+|+++... .+..+++..+. ... . .|+++++||+|+.+.
T Consensus 110 DtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~-~~~-~--------------~~iIvviNK~Dl~~~ 172 (434)
T 1zun_B 110 DTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIAS-LLG-I--------------KHIVVAINKMDLNGF 172 (434)
T ss_dssp ECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHH-HTT-C--------------CEEEEEEECTTTTTS
T ss_pred ECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHH-HcC-C--------------CeEEEEEEcCcCCcc
Confidence 999999998888888999999999999998643 23334443332 221 0 469999999999653
Q ss_pred ce--e--cHHHHHHHHHHhC-----CcEEEeccccCCC
Q psy1873 129 RM--I--SYDEGKRLAESWK-----AGFVEASAKQDDY 157 (157)
Q Consensus 129 ~~--~--~~~~~~~~~~~~~-----~~~~e~Sa~~~~~ 157 (157)
.+ + ..++...+++.++ ++++++||++|+|
T Consensus 173 ~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~g 210 (434)
T 1zun_B 173 DERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDN 210 (434)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTT
T ss_pred cHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCC
Confidence 21 1 2355667777777 6899999999986
No 144
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.82 E-value=2.3e-21 Score=142.05 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=81.5
Q ss_pred eEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECC----------ChhhHHHHHHHHHHHHHHhccccCCCCCCCCCC
Q psy1873 41 QDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSIT----------SHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSC 110 (157)
Q Consensus 41 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 110 (157)
+.+.+++||++||++++.+|..++++++++|+|||++ +.+++++...|+..+........
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~---------- 250 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK---------- 250 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSS----------
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCC----------
Confidence 6789999999999999999999999999999999998 88899999999999876543223
Q ss_pred CCCCcEEEEEeCCCCCCCce--e-------------------cHHHHHHHHHH----------------hCCcEEEeccc
Q psy1873 111 VSSVPIVLVGNKKDLHMERM--I-------------------SYDEGKRLAES----------------WKAGFVEASAK 153 (157)
Q Consensus 111 ~~~~p~~vv~nK~Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~e~Sa~ 153 (157)
+|++|+|||+|+..++. + ..+++..++.. ..+.+++|||+
T Consensus 251 ---~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~ 327 (354)
T 2xtz_A 251 ---TSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTAL 327 (354)
T ss_dssp ---CEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTT
T ss_pred ---CeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEee
Confidence 99999999999843221 1 24667776543 12457999999
Q ss_pred cCCC
Q psy1873 154 QDDY 157 (157)
Q Consensus 154 ~~~~ 157 (157)
+++|
T Consensus 328 d~~n 331 (354)
T 2xtz_A 328 DQKL 331 (354)
T ss_dssp CHHH
T ss_pred cchh
Confidence 9865
No 145
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.81 E-value=2e-19 Score=134.18 Aligned_cols=141 Identities=14% Similarity=0.100 Sum_probs=94.1
Q ss_pred CCCCCCChhhhHhhhhccccccc---ccCCccc--------eEEEE-----EEE---CCeEEEEEEEeCCCCccCcCchh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDS---YDPTIEN--------TFVKT-----TRM---NNQDYDLKLVDTAGQDEYSIFPA 61 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~---~~~t~~~--------~~~~~-----~~~---~~~~~~~~i~D~~g~~~~~~~~~ 61 (157)
+|.+++|||||+++|++...... ...+.+. .+... ... ......+.+||+||+++|.....
T Consensus 14 vG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~~~~~~~ 93 (403)
T 3sjy_A 14 VGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATML 93 (403)
T ss_dssp ECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGGGHHHHH
T ss_pred ECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcHHHHHHHH
Confidence 69999999999999987432110 0000000 00000 000 11236789999999999999999
Q ss_pred hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec--HHHHHHH
Q psy1873 62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS--YDEGKRL 139 (157)
Q Consensus 62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~--~~~~~~~ 139 (157)
..+..+|++|+|+|.++..++.+...|+..+..... .|+++++||+|+.+..... .++...+
T Consensus 94 ~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~----------------~~iivviNK~Dl~~~~~~~~~~~~i~~~ 157 (403)
T 3sjy_A 94 SGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV----------------KNLIIVQNKVDVVSKEEALSQYRQIKQF 157 (403)
T ss_dssp HHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC----------------CCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred HHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC----------------CCEEEEEECccccchHHHHHHHHHHHHH
Confidence 999999999999999998777777777765543321 5899999999986543221 1222333
Q ss_pred HHHh---CCcEEEeccccCCC
Q psy1873 140 AESW---KAGFVEASAKQDDY 157 (157)
Q Consensus 140 ~~~~---~~~~~e~Sa~~~~~ 157 (157)
.... +++++++||++|+|
T Consensus 158 l~~~~~~~~~ii~vSA~~g~g 178 (403)
T 3sjy_A 158 TKGTWAENVPIIPVSALHKIN 178 (403)
T ss_dssp HTTSTTTTCCEEECBTTTTBS
T ss_pred HHhhCCCCCEEEEEECCCCcC
Confidence 3222 57899999999986
No 146
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.81 E-value=1.4e-20 Score=141.61 Aligned_cols=141 Identities=18% Similarity=0.196 Sum_probs=95.6
Q ss_pred CCCCCCChhhhHhhhhcc--ccccc-------------------------------ccCCccceEEEEEEECCeEEEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDG--QFVDS-------------------------------YDPTIENTFVKTTRMNNQDYDLKL 47 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~--~~~~~-------------------------------~~~t~~~~~~~~~~~~~~~~~~~i 47 (157)
+|..++|||||+++|+.. .+... ...|+... .. .++.....+.+
T Consensus 12 iG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~-~~--~~~~~~~~~~i 88 (435)
T 1jny_A 12 IGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLT-FM--RFETKKYFFTI 88 (435)
T ss_dssp EESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC------------C--EEECSSCEEEE
T ss_pred EeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEee-EE--EEecCCeEEEE
Confidence 599999999999999864 22111 00122111 11 23334467899
Q ss_pred EeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhc---cccCCCCCCCCCCCCCCcEEEEEeCCC
Q psy1873 48 VDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTG---KIQNSSVKSPTSCVSSVPIVLVGNKKD 124 (157)
Q Consensus 48 ~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~p~~vv~nK~D 124 (157)
||+||+++|......++..+|++|+|+|+++ .+|+.+..|..+..++.. ... -.|++|++||+|
T Consensus 89 iDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~------------~~~iivviNK~D 155 (435)
T 1jny_A 89 IDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMG------------LDQLIVAVNKMD 155 (435)
T ss_dssp CCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTT------------CTTCEEEEECGG
T ss_pred EECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcC------------CCeEEEEEEccc
Confidence 9999999999888889999999999999998 788865544333333221 111 046999999999
Q ss_pred CCCCc------eecHHHHHHHHHHhC-----CcEEEeccccCCC
Q psy1873 125 LHMER------MISYDEGKRLAESWK-----AGFVEASAKQDDY 157 (157)
Q Consensus 125 l~~~~------~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~ 157 (157)
+.+.. ....++...++..++ ++++++||++|+|
T Consensus 156 l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~ 199 (435)
T 1jny_A 156 LTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDN 199 (435)
T ss_dssp GSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBT
T ss_pred CCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcc
Confidence 86521 222455677777776 6799999999986
No 147
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.81 E-value=1.6e-19 Score=133.00 Aligned_cols=140 Identities=21% Similarity=0.164 Sum_probs=89.3
Q ss_pred CCCCCCChhhhHhhhhcccccc-cccCCccceEEEEEEECCeEEEEEEEeCCCCcc---------CcCchhhhccCCCEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVD-SYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDE---------YSIFPAQYSMDIHGY 70 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~~~~~~~ 70 (157)
+|++|||||||+|++++..+.. .+..++.+.....+.+++. .+.+|||+|... |...+. .+..+|++
T Consensus 185 vG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~i 261 (364)
T 2qtf_A 185 VGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDAL 261 (364)
T ss_dssp ECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEE
T ss_pred ECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEE
Confidence 6999999999999999876632 2222323344566777774 578999999632 222222 46889999
Q ss_pred EEEEECCChh--hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce-ecHHHHHHHHHHh---C
Q psy1873 71 VLVYSITSHK--SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM-ISYDEGKRLAESW---K 144 (157)
Q Consensus 71 ilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~-~~~~~~~~~~~~~---~ 144 (157)
++|+|++++. ..+.+..|...+ ....... .|+++|+||+|+.+... .....+..++..+ +
T Consensus 262 l~VvD~s~~~~~~~~~~~~~~~~L-~~l~~~~-------------~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~ 327 (364)
T 2qtf_A 262 ILVIDSTFSENLLIETLQSSFEIL-REIGVSG-------------KPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPI 327 (364)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHH-HHHTCCS-------------CCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCE
T ss_pred EEEEECCCCcchHHHHHHHHHHHH-HHhCcCC-------------CCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCC
Confidence 9999999877 555555544433 3332222 89999999999865331 1112344445555 3
Q ss_pred CcEEEeccccCCC
Q psy1873 145 AGFVEASAKQDDY 157 (157)
Q Consensus 145 ~~~~e~Sa~~~~~ 157 (157)
.+++++||++|+|
T Consensus 328 ~~~~~~SA~~g~g 340 (364)
T 2qtf_A 328 FDVIPISALKRTN 340 (364)
T ss_dssp EEEEECBTTTTBS
T ss_pred CcEEEEECCCCcC
Confidence 4789999999986
No 148
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.81 E-value=1.3e-20 Score=136.45 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=92.3
Q ss_pred ccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECC----------ChhhHHHHHHHHHHHH
Q psy1873 24 YDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSIT----------SHKSFEVVQILYDKLL 93 (157)
Q Consensus 24 ~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~~~~~i~ 93 (157)
..+|+|.. ...+.+++ +.+++||++||++++.+|..++++++++|+|||++ +.+++++...|+..+.
T Consensus 151 r~~TiGi~-~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~ 227 (327)
T 3ohm_A 151 RVPTTGII-EYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTII 227 (327)
T ss_dssp CCCCCSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHH
T ss_pred cCceeeEE-EEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHh
Confidence 45666622 33344444 78999999999999999999999999999999665 6778888888988887
Q ss_pred HHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc----------------eecHHHHHHHH----------HHhCCcE
Q psy1873 94 DMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER----------------MISYDEGKRLA----------ESWKAGF 147 (157)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~----------------~~~~~~~~~~~----------~~~~~~~ 147 (157)
....... +|++|+|||+|+..++ .++.+++..+. ...++.+
T Consensus 228 ~~~~~~~-------------~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~ 294 (327)
T 3ohm_A 228 TYPWFQN-------------SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYS 294 (327)
T ss_dssp TSGGGTT-------------CEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEE
T ss_pred hhhccCC-------------ceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEE
Confidence 6544333 9999999999986433 46778888884 3456789
Q ss_pred EEeccccCCC
Q psy1873 148 VEASAKQDDY 157 (157)
Q Consensus 148 ~e~Sa~~~~~ 157 (157)
++|||++++|
T Consensus 295 ~~TsA~d~~n 304 (327)
T 3ohm_A 295 HFTCATDTEN 304 (327)
T ss_dssp EECCTTCHHH
T ss_pred EEEEeecCHH
Confidence 9999998764
No 149
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.80 E-value=3e-19 Score=133.46 Aligned_cols=137 Identities=21% Similarity=0.244 Sum_probs=85.0
Q ss_pred CCCCCCChhhhHhhhhcc---cccccccC--CccceE-EEEEEE-------------C--C----eEEEEEEEeCCCCcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG---QFVDSYDP--TIENTF-VKTTRM-------------N--N----QDYDLKLVDTAGQDE 55 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~---~~~~~~~~--t~~~~~-~~~~~~-------------~--~----~~~~~~i~D~~g~~~ 55 (157)
+|..++|||||+++|++. .+..+..+ |+...| ...+.. + + ....+.+||+||+++
T Consensus 14 iG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~ 93 (408)
T 1s0u_A 14 VGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHET 93 (408)
T ss_dssp ESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHH
T ss_pred EcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECCCHHH
Confidence 699999999999999843 22333333 444333 222211 1 1 136789999999999
Q ss_pred CcCchhhhccCCCEEEEEEECCC----hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce-
Q psy1873 56 YSIFPAQYSMDIHGYVLVYSITS----HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM- 130 (157)
Q Consensus 56 ~~~~~~~~~~~~~~~ilv~d~~~----~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~- 130 (157)
|.......+..+|++|+|+|+++ +++++.+..+ .... . .|++|++||+|+.+...
T Consensus 94 f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-----~~l~-~--------------~~iivv~NK~Dl~~~~~~ 153 (408)
T 1s0u_A 94 LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL-----EILG-I--------------DKIIIVQNKIDLVDEKQA 153 (408)
T ss_dssp HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH-----HHTT-C--------------CCEEEEEECTTSSCTTTT
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH-----HHcC-C--------------CeEEEEEEccCCCCHHHH
Confidence 88777777788899999999995 4445444322 1111 1 57999999999975432
Q ss_pred -ecHHHHHHHHHH---hCCcEEEeccccCCC
Q psy1873 131 -ISYDEGKRLAES---WKAGFVEASAKQDDY 157 (157)
Q Consensus 131 -~~~~~~~~~~~~---~~~~~~e~Sa~~~~~ 157 (157)
...++...++.. .+++++++||++|+|
T Consensus 154 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~g 184 (408)
T 1s0u_A 154 EENYEQIKEFVKGTIAENAPIIPISAHHEAN 184 (408)
T ss_dssp TTHHHHHHHHHTTSTTTTCCEEEC------C
T ss_pred HHHHHHHHHHHhhcCCCCCeEEEeeCCCCCC
Confidence 234556666654 357999999999986
No 150
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.80 E-value=1.2e-19 Score=134.53 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=68.1
Q ss_pred EEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC----------hhhHHHHHHHHHHHHHHhccccCCC
Q psy1873 34 KTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS----------HKSFEVVQILYDKLLDMTGKIQNSS 103 (157)
Q Consensus 34 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~ 103 (157)
..+.+++ +.+++||++||++++.+|..++++++++|+|||+++ .++|+++..|+..+........
T Consensus 210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~--- 284 (402)
T 1azs_C 210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT--- 284 (402)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSS---
T ss_pred EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCC---
Confidence 3445554 789999999999999999999999999999999999 8999999999999876543222
Q ss_pred CCCCCCCCCCCcEEEEEeCCCCCC
Q psy1873 104 VKSPTSCVSSVPIVLVGNKKDLHM 127 (157)
Q Consensus 104 ~~~~~~~~~~~p~~vv~nK~Dl~~ 127 (157)
+|++|+|||+|+..
T Consensus 285 ----------~piiLvgNK~DL~~ 298 (402)
T 1azs_C 285 ----------ISVILFLNKQDLLA 298 (402)
T ss_dssp ----------CCEEEEEECHHHHH
T ss_pred ----------CeEEEEEEChhhhh
Confidence 99999999999854
No 151
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.80 E-value=9.7e-20 Score=133.84 Aligned_cols=109 Identities=15% Similarity=0.114 Sum_probs=81.1
Q ss_pred EEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCC----------hhhHHHHHHHHHHHHHHhccccCCC
Q psy1873 34 KTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITS----------HKSFEVVQILYDKLLDMTGKIQNSS 103 (157)
Q Consensus 34 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~~~ 103 (157)
..+.+++ +.+++||++||++++.+|..++++++++|+|||+++ .+++++...|+..+........
T Consensus 194 ~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~--- 268 (362)
T 1zcb_A 194 YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSN--- 268 (362)
T ss_dssp EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTT---
T ss_pred EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCC---
Confidence 3445554 788999999999999999999999999999999999 7899999999999887543223
Q ss_pred CCCCCCCCCCCcEEEEEeCCCCCCCc----------------eecHHHHHHHHH-----------HhCCcEEEeccccCC
Q psy1873 104 VKSPTSCVSSVPIVLVGNKKDLHMER----------------MISYDEGKRLAE-----------SWKAGFVEASAKQDD 156 (157)
Q Consensus 104 ~~~~~~~~~~~p~~vv~nK~Dl~~~~----------------~~~~~~~~~~~~-----------~~~~~~~e~Sa~~~~ 156 (157)
+|++|++||+|+..++ .++.+++..++. ..++.+++|||++++
T Consensus 269 ----------~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~ 338 (362)
T 1zcb_A 269 ----------VSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTE 338 (362)
T ss_dssp ----------SEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHH
T ss_pred ----------CCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCch
Confidence 9999999999985322 266778877762 346789999999986
Q ss_pred C
Q psy1873 157 Y 157 (157)
Q Consensus 157 ~ 157 (157)
|
T Consensus 339 n 339 (362)
T 1zcb_A 339 N 339 (362)
T ss_dssp H
T ss_pred h
Confidence 5
No 152
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.80 E-value=2.6e-19 Score=126.26 Aligned_cols=139 Identities=15% Similarity=0.143 Sum_probs=86.0
Q ss_pred CCCCCCChhhhHhhhhccc-ccccccCC-c-cceEEEEEEECCeEEEEEEEeCCCCccCcCch-----------hhhccC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ-FVDSYDPT-I-ENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP-----------AQYSMD 66 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~-~~~~~~~t-~-~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-----------~~~~~~ 66 (157)
+|.+|||||||+++|++.. +...+.++ + ..........++ ..+.+|||||+..+.... ..+++.
T Consensus 28 vG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~ 105 (260)
T 2xtp_A 28 VGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPG 105 (260)
T ss_dssp EECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTC
T ss_pred ECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 6999999999999999876 44444443 2 233344555665 457999999987664332 226789
Q ss_pred CCEEEEEEECCChhhH-HHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEE-eCCCCCCCceecH-------HHHH
Q psy1873 67 IHGYVLVYSITSHKSF-EVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG-NKKDLHMERMISY-------DEGK 137 (157)
Q Consensus 67 ~~~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~-nK~Dl~~~~~~~~-------~~~~ 137 (157)
+|++|+|+|+++.... ..+..++..+...... .|.+++. ||+|+... .+.. .++.
T Consensus 106 ~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~---------------~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~ 169 (260)
T 2xtp_A 106 PHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAM---------------GHTIVLFTHKEDLNGG-SLMDYMHDSDNKALS 169 (260)
T ss_dssp CSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGG---------------GGEEEEEECGGGGTTC-CHHHHHHHCCCHHHH
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhh---------------ccEEEEEEcccccCCc-cHHHHHHhcchHHHH
Confidence 9999999999862222 2233343333221111 4555555 59998643 2222 3345
Q ss_pred HHHHHhCCc---E--EEeccccCCC
Q psy1873 138 RLAESWKAG---F--VEASAKQDDY 157 (157)
Q Consensus 138 ~~~~~~~~~---~--~e~Sa~~~~~ 157 (157)
.++...+.. + +++||++|.|
T Consensus 170 ~~~~~~~~~~~~~~~~~~SA~~~~g 194 (260)
T 2xtp_A 170 KLVAACGGRICAFNNRAEGSNQDDQ 194 (260)
T ss_dssp HHHHHTTTCEEECCTTCCHHHHHHH
T ss_pred HHHHHhCCeEEEecCcccccccHHH
Confidence 566666642 3 7899988754
No 153
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.80 E-value=1.9e-19 Score=139.62 Aligned_cols=137 Identities=20% Similarity=0.178 Sum_probs=93.4
Q ss_pred CCCCCCChhhhHhhhhccc--cc-----ccccC------CccceE---EEEEEE---CCeEEEEEEEeCCCCccCcCchh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ--FV-----DSYDP------TIENTF---VKTTRM---NNQDYDLKLVDTAGQDEYSIFPA 61 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~--~~-----~~~~~------t~~~~~---~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~ 61 (157)
+|..++|||||+++|+... +. ..+.. +.+.+. ...+.+ ++..+.+.+|||||+.+|.....
T Consensus 10 iGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~~ev~ 89 (599)
T 3cb4_D 10 IAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVS 89 (599)
T ss_dssp ECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGGHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHHHHHH
Confidence 6999999999999998632 11 00100 112111 112222 45678999999999999999999
Q ss_pred hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH
Q psy1873 62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE 141 (157)
Q Consensus 62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~ 141 (157)
..++.+|++|+|+|.++..+.+....|..... . . +|+++++||+|+...+ .......+..
T Consensus 90 ~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-~----~-------------ipiIvViNKiDl~~a~--~~~v~~ei~~ 149 (599)
T 3cb4_D 90 RSLAACEGALLVVDAGQGVEAQTLANCYTAME-M----D-------------LEVVPVLNKIDLPAAD--PERVAEEIED 149 (599)
T ss_dssp HHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-T----T-------------CEEEEEEECTTSTTCC--HHHHHHHHHH
T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-C----C-------------CCEEEeeeccCccccc--HHHHHHHHHH
Confidence 99999999999999999877777766654432 1 2 8999999999996543 2344566777
Q ss_pred HhCC---cEEEeccccCCC
Q psy1873 142 SWKA---GFVEASAKQDDY 157 (157)
Q Consensus 142 ~~~~---~~~e~Sa~~~~~ 157 (157)
.+++ +++++||++|+|
T Consensus 150 ~lg~~~~~vi~vSAktg~G 168 (599)
T 3cb4_D 150 IVGIDATDAVRCSAKTGVG 168 (599)
T ss_dssp HTCCCCTTCEEECTTTCTT
T ss_pred HhCCCcceEEEeecccCCC
Confidence 7776 499999999986
No 154
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.80 E-value=3.3e-19 Score=134.28 Aligned_cols=138 Identities=14% Similarity=0.028 Sum_probs=88.4
Q ss_pred CCCCCCChhhhHhhhhcccc--c-----------------------------ccccCCccceE-EEEEEECCeEEEEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--V-----------------------------DSYDPTIENTF-VKTTRMNNQDYDLKLV 48 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--~-----------------------------~~~~~t~~~~~-~~~~~~~~~~~~~~i~ 48 (157)
+|.+++|||||+++|+...- . .+....+.... ...+..+ ...+.+|
T Consensus 23 iG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~--~~~~~ii 100 (439)
T 3j2k_7 23 IGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE--KKHFTIL 100 (439)
T ss_pred EeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC--CeEEEEE
Confidence 69999999999999964311 0 00111111111 2223333 3578999
Q ss_pred eCCCCccCcCchhhhccCCCEEEEEEECCChhh---HH---HHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEEEEe
Q psy1873 49 DTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKS---FE---VVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVLVGN 121 (157)
Q Consensus 49 D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~vv~n 121 (157)
|+||+++|.......+..+|++|+|+|.++... |+ +..+.+..+. .. . +| ++|++|
T Consensus 101 DTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~-~~---~-------------v~~iIvviN 163 (439)
T 3j2k_7 101 DAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK-TA---G-------------VKHLIVLIN 163 (439)
T ss_pred ECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHH-Hc---C-------------CCeEEEEee
Confidence 999999999888888999999999999988532 22 2222222221 11 1 66 999999
Q ss_pred CCCCCCC------ceecHHHHHHHHHHhC------CcEEEeccccCCC
Q psy1873 122 KKDLHME------RMISYDEGKRLAESWK------AGFVEASAKQDDY 157 (157)
Q Consensus 122 K~Dl~~~------~~~~~~~~~~~~~~~~------~~~~e~Sa~~~~~ 157 (157)
|+|+... .....++...++..++ ++++++||++|+|
T Consensus 164 K~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~n 211 (439)
T 3j2k_7 164 KMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGAN 211 (439)
T ss_pred cCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcc
Confidence 9998532 1122234455555555 4799999999987
No 155
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.7e-19 Score=140.55 Aligned_cols=141 Identities=12% Similarity=0.057 Sum_probs=88.6
Q ss_pred CCCCCCChhhhHhhhhcccccccc-------------------------------cC--CccceEEEEEEECCeEEEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSY-------------------------------DP--TIENTFVKTTRMNNQDYDLKL 47 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~-------------------------------~~--t~~~~~~~~~~~~~~~~~~~i 47 (157)
+|.+++|||||+++|+........ .+ |+.. ....+.. ....+.|
T Consensus 173 vG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~-~~~~~~~--~~~~~~i 249 (611)
T 3izq_1 173 LGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSI-CTSHFST--HRANFTI 249 (611)
T ss_dssp ECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSC-SCCEEEC--SSCEEEE
T ss_pred EECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEee-eeEEEec--CCceEEE
Confidence 699999999999999865321100 01 1111 1222223 3457899
Q ss_pred EeCCCCccCcCchhhhccCCCEEEEEEECCChh---hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCC
Q psy1873 48 VDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK---SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKD 124 (157)
Q Consensus 48 ~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~D 124 (157)
|||||+++|.......++.+|++|+|+|+++.. ++....++...+........ .|++||+||+|
T Consensus 250 iDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi-------------~~iIVVvNKiD 316 (611)
T 3izq_1 250 VDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGI-------------HNLIIAMNKMD 316 (611)
T ss_dssp EECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTC-------------CEEEEEEECTT
T ss_pred EECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCC-------------CeEEEEEeccc
Confidence 999999999988888999999999999998742 11111111111111111111 45999999999
Q ss_pred CCCCceec----HHHHHHHHHHhC-----CcEEEeccccCCC
Q psy1873 125 LHMERMIS----YDEGKRLAESWK-----AGFVEASAKQDDY 157 (157)
Q Consensus 125 l~~~~~~~----~~~~~~~~~~~~-----~~~~e~Sa~~~~~ 157 (157)
+.+.++.. ..+...+....+ ++++++||++|+|
T Consensus 317 l~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~g 358 (611)
T 3izq_1 317 NVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEG 358 (611)
T ss_dssp TTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTT
T ss_pred ccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCC
Confidence 97633322 233444444444 5899999999987
No 156
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.80 E-value=3.9e-19 Score=123.96 Aligned_cols=137 Identities=18% Similarity=0.193 Sum_probs=87.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccC--Ccc-ceEEEEEEECCeEEEEEEEeCCCCc-----------cCcCchhhhccC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDP--TIE-NTFVKTTRMNNQDYDLKLVDTAGQD-----------EYSIFPAQYSMD 66 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~--t~~-~~~~~~~~~~~~~~~~~i~D~~g~~-----------~~~~~~~~~~~~ 66 (157)
||++|||||||+++|++..+.....+ ++. ......+.+++. .+.+|||||.. .+.......+++
T Consensus 35 vG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (239)
T 3lxx_A 35 VGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPG 112 (239)
T ss_dssp ECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHHHHHHHHHHTTTC
T ss_pred ECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCC
Confidence 69999999999999999877544433 222 333455566664 57899999943 333445556678
Q ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHHhcc-ccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec------HHHHHHH
Q psy1873 67 IHGYVLVYSITSHKSFEVVQILYDKLLDMTGK-IQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS------YDEGKRL 139 (157)
Q Consensus 67 ~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~------~~~~~~~ 139 (157)
++++|+|+|+++...- ...|+..+...... .. .|++||+||+|+...+.+. .+..+.+
T Consensus 113 ~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~-------------~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l 177 (239)
T 3lxx_A 113 PHALLLVVPLGRYTEE--EHKATEKILKMFGERAR-------------SFMILIFTRKDDLGDTNLHDYLREAPEDIQDL 177 (239)
T ss_dssp CSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHG-------------GGEEEEEECGGGC------------CHHHHHH
T ss_pred CcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhcc-------------ceEEEEEeCCccCCcccHHHHHHhchHHHHHH
Confidence 8999999998764442 12333333332211 11 6899999999986554433 2457788
Q ss_pred HHHhCCcEEEecccc
Q psy1873 140 AESWKAGFVEASAKQ 154 (157)
Q Consensus 140 ~~~~~~~~~e~Sa~~ 154 (157)
++..+..|+.+++..
T Consensus 178 ~~~~~~~~~~~~~~~ 192 (239)
T 3lxx_A 178 MDIFGDRYCALNNKA 192 (239)
T ss_dssp HHHHSSSEEECCTTC
T ss_pred HHHcCCEEEEEECCC
Confidence 888888888777664
No 157
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.79 E-value=4.4e-19 Score=137.45 Aligned_cols=137 Identities=20% Similarity=0.181 Sum_probs=95.0
Q ss_pred CCCCCCChhhhHhhhhccc--ccc-----cccCC------ccceE---EEEEEE---CCeEEEEEEEeCCCCccCcCchh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ--FVD-----SYDPT------IENTF---VKTTRM---NNQDYDLKLVDTAGQDEYSIFPA 61 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~--~~~-----~~~~t------~~~~~---~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~ 61 (157)
+|..++|||||+++|+... +.. ....+ .+.+. ...+.+ ++..+.+.+|||||+.+|.....
T Consensus 12 iGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF~~ev~ 91 (600)
T 2ywe_A 12 IAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFSYEVS 91 (600)
T ss_dssp ECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGGHHHHH
T ss_pred ECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhHHHHHH
Confidence 6999999999999998632 110 00000 11111 112222 45678899999999999998888
Q ss_pred hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHH
Q psy1873 62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE 141 (157)
Q Consensus 62 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~ 141 (157)
..+..+|++|+|+|.++..+.+....|..... . . +|+++++||+|+...+ .......+..
T Consensus 92 r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-~----~-------------ipiIvviNKiDl~~a~--~~~v~~el~~ 151 (600)
T 2ywe_A 92 RALAACEGALLLIDASQGIEAQTVANFWKAVE-Q----D-------------LVIIPVINKIDLPSAD--VDRVKKQIEE 151 (600)
T ss_dssp HHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-T----T-------------CEEEEEEECTTSTTCC--HHHHHHHHHH
T ss_pred HHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-C----C-------------CCEEEEEeccCccccC--HHHHHHHHHH
Confidence 89999999999999999888877766654431 1 2 8999999999996543 2344556666
Q ss_pred HhCC---cEEEeccccCCC
Q psy1873 142 SWKA---GFVEASAKQDDY 157 (157)
Q Consensus 142 ~~~~---~~~e~Sa~~~~~ 157 (157)
.+++ +++++||++|+|
T Consensus 152 ~lg~~~~~vi~vSAktg~G 170 (600)
T 2ywe_A 152 VLGLDPEEAILASAKEGIG 170 (600)
T ss_dssp TSCCCGGGCEECBTTTTBS
T ss_pred hhCCCcccEEEEEeecCCC
Confidence 6776 499999999986
No 158
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.79 E-value=2.3e-19 Score=136.53 Aligned_cols=133 Identities=22% Similarity=0.201 Sum_probs=90.8
Q ss_pred CCCCCCChhhhHhhhhccc-------ccccccC--CccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ-------FVDSYDP--TIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYV 71 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~-------~~~~~~~--t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i 71 (157)
+|..++|||||+++|++.. ......+ |+... ...+..++ ..+.+||+||+++|.......+..+|++|
T Consensus 25 iG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~-~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~~aD~~i 101 (482)
T 1wb1_A 25 FGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIG-FSAFKLEN--YRITLVDAPGHADLIRAVVSAADIIDLAL 101 (482)
T ss_dssp EECTTSSHHHHHHHHHTTC--------------------C-CCEEEETT--EEEEECCCSSHHHHHHHHHHHTTSCCEEE
T ss_pred ECCCCChHHHHHHHHHCCCcccccccccccccCccEEecc-eEEEEECC--EEEEEEECCChHHHHHHHHHHHhhCCEEE
Confidence 5999999999999998765 2222222 22211 22234454 56899999999999888888899999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce--ecHHHHHHHHHHh---
Q psy1873 72 LVYSITS---HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM--ISYDEGKRLAESW--- 143 (157)
Q Consensus 72 lv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~--~~~~~~~~~~~~~--- 143 (157)
+|+|.++ +++.+.+. ++... . +|+++++||+|+.+... ...++...++...
T Consensus 102 lVvda~~g~~~qt~e~l~-----~~~~~---~-------------ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 160 (482)
T 1wb1_A 102 IVVDAKEGPKTQTGEHML-----ILDHF---N-------------IPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL 160 (482)
T ss_dssp EEEETTTCSCHHHHHHHH-----HHHHT---T-------------CCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSG
T ss_pred EEEecCCCccHHHHHHHH-----HHHHc---C-------------CCEEEEEECCCcccchhHHHHHHHHHHHHhhhccc
Confidence 9999988 45554443 12221 1 88899999999965321 2234455566555
Q ss_pred -CCcEEEeccccCCC
Q psy1873 144 -KAGFVEASAKQDDY 157 (157)
Q Consensus 144 -~~~~~e~Sa~~~~~ 157 (157)
+++++++||++|+|
T Consensus 161 ~~~~ii~vSA~~g~g 175 (482)
T 1wb1_A 161 KNSSIIPISAKTGFG 175 (482)
T ss_dssp GGCCEEECCTTTCTT
T ss_pred ccceEEEEECcCCCC
Confidence 57999999999986
No 159
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.79 E-value=7.2e-20 Score=136.72 Aligned_cols=139 Identities=18% Similarity=0.147 Sum_probs=94.3
Q ss_pred CCCCCCChhhhHhhhhcc--------ccccc--c-----cCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVDG--------QFVDS--Y-----DPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYS 64 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~--------~~~~~--~-----~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 64 (157)
+|.+++|||||+++|++. .+... . ..+.+... .....++.....+.+||+||+++|.......+
T Consensus 17 iG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~ 96 (405)
T 2c78_A 17 IGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGA 96 (405)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHHHHHHHHH
Confidence 599999999999999873 11110 0 00111111 22333444446789999999999988888889
Q ss_pred cCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEEEEeCCCCCCCce---ecHHHHHHHH
Q psy1873 65 MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVLVGNKKDLHMERM---ISYDEGKRLA 140 (157)
Q Consensus 65 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~vv~nK~Dl~~~~~---~~~~~~~~~~ 140 (157)
..+|++|+|+|.++... .+...|+..+... . +| +++++||+|+..... ....+...++
T Consensus 97 ~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~----~-------------ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l 158 (405)
T 2c78_A 97 AQMDGAILVVSAADGPM-PQTREHILLARQV----G-------------VPYIVVFMNKVDMVDDPELLDLVEMEVRDLL 158 (405)
T ss_dssp TTCSSEEEEEETTTCCC-HHHHHHHHHHHHT----T-------------CCCEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHCCEEEEEEECCCCCc-HHHHHHHHHHHHc----C-------------CCEEEEEEECccccCcHHHHHHHHHHHHHHH
Confidence 99999999999988654 3445555444332 1 77 899999999864222 1223566677
Q ss_pred HHhC-----CcEEEeccccCCC
Q psy1873 141 ESWK-----AGFVEASAKQDDY 157 (157)
Q Consensus 141 ~~~~-----~~~~e~Sa~~~~~ 157 (157)
..++ ++++++||++|+|
T Consensus 159 ~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 159 NQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp HHTTSCTTTSCEEECCHHHHHH
T ss_pred HHhcccccCCCEEEccHHHhhh
Confidence 7766 6899999998853
No 160
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.79 E-value=1.7e-21 Score=149.10 Aligned_cols=138 Identities=21% Similarity=0.169 Sum_probs=93.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|.+++|||||+++|.+..+...+.+++...+ ...+..+ ....+.+|||||++.|..++..+++.+|++|+|+|.++.
T Consensus 10 vG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg 88 (537)
T 3izy_P 10 MGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDG 88 (537)
T ss_dssp EESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSC
T ss_pred ECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCC
Confidence 69999999999999998877655555544322 2222332 123578999999999999999999999999999999986
Q ss_pred hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec-HHHHHHH---HHHh--CCcEEEeccc
Q psy1873 80 KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS-YDEGKRL---AESW--KAGFVEASAK 153 (157)
Q Consensus 80 ~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~-~~~~~~~---~~~~--~~~~~e~Sa~ 153 (157)
...+.... +..+.. .. +|++|++||+|+.+.+... ..+...+ +..+ .++++++||+
T Consensus 89 ~~~qt~e~-l~~~~~----~~-------------vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAk 150 (537)
T 3izy_P 89 VMKQTVES-IQHAKD----AH-------------VPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSAL 150 (537)
T ss_dssp CCHHHHHH-HHHHHT----TT-------------CCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSS
T ss_pred ccHHHHHH-HHHHHH----cC-------------CcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECC
Confidence 55544332 222221 12 8999999999986432211 1111111 1122 2589999999
Q ss_pred cCCC
Q psy1873 154 QDDY 157 (157)
Q Consensus 154 ~~~~ 157 (157)
+|+|
T Consensus 151 tG~G 154 (537)
T 3izy_P 151 TGEN 154 (537)
T ss_dssp SSCS
T ss_pred CCCC
Confidence 9986
No 161
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.79 E-value=3.7e-19 Score=134.69 Aligned_cols=137 Identities=14% Similarity=0.084 Sum_probs=91.6
Q ss_pred CCCCCCChhhhHhhhhcc--cccc-------------------------------cccCCccceEEEEEEECCeEEEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDG--QFVD-------------------------------SYDPTIENTFVKTTRMNNQDYDLKL 47 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~--~~~~-------------------------------~~~~t~~~~~~~~~~~~~~~~~~~i 47 (157)
+|.+++|||||+++|+.. .+.. ..-.|+...+ .. ++.....+.+
T Consensus 13 iG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~-~~--~~~~~~~~~i 89 (458)
T 1f60_A 13 IGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIAL-WK--FETPKYQVTV 89 (458)
T ss_dssp EECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSC-EE--EECSSEEEEE
T ss_pred EcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEE-EE--EecCCceEEE
Confidence 599999999999999864 1110 0112222111 22 2333467899
Q ss_pred EeCCCCccCcCchhhhccCCCEEEEEEECCChh---hHH---HHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEEEE
Q psy1873 48 VDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK---SFE---VVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVLVG 120 (157)
Q Consensus 48 ~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~vv~ 120 (157)
||+||+++|.......+..+|++|+|+|.++.. +|+ +..+++..+ ... . +| ++|++
T Consensus 90 iDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~~---~-------------v~~iivvi 152 (458)
T 1f60_A 90 IDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FTL---G-------------VRQLIVAV 152 (458)
T ss_dssp EECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HHT---T-------------CCEEEEEE
T ss_pred EECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HHc---C-------------CCeEEEEE
Confidence 999999999988888899999999999998763 332 233333222 211 1 55 99999
Q ss_pred eCCCCCCCce----ecHHHHHHHHHHhC-----CcEEEeccccCCC
Q psy1873 121 NKKDLHMERM----ISYDEGKRLAESWK-----AGFVEASAKQDDY 157 (157)
Q Consensus 121 nK~Dl~~~~~----~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~ 157 (157)
||+|+.+..+ ...++...++..++ ++++++||++|+|
T Consensus 153 NK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~n 198 (458)
T 1f60_A 153 NKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDN 198 (458)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBT
T ss_pred EccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcC
Confidence 9999863211 22345666666666 6899999999986
No 162
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.78 E-value=6.6e-19 Score=131.72 Aligned_cols=137 Identities=20% Similarity=0.223 Sum_probs=90.7
Q ss_pred CCCCCCChhhhHhhhhcc---cccccccC--CccceEE-EEEEE-------------C--C----eEEEEEEEeCCCCcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG---QFVDSYDP--TIENTFV-KTTRM-------------N--N----QDYDLKLVDTAGQDE 55 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~---~~~~~~~~--t~~~~~~-~~~~~-------------~--~----~~~~~~i~D~~g~~~ 55 (157)
+|..++|||||+++|++. .+..+..+ |+...|. ..+.. + + ....+.+||+||+++
T Consensus 16 iG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~ 95 (410)
T 1kk1_A 16 VGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEA 95 (410)
T ss_dssp ECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHH
T ss_pred ECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECCChHH
Confidence 699999999999999843 22333333 4443332 21111 1 1 136789999999999
Q ss_pred CcCchhhhccCCCEEEEEEECCCh----hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce-
Q psy1873 56 YSIFPAQYSMDIHGYVLVYSITSH----KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM- 130 (157)
Q Consensus 56 ~~~~~~~~~~~~~~~ilv~d~~~~----~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~- 130 (157)
|.......+..+|++|+|+|.++. ++.+.+..+ .... . .|+++++||+|+.+...
T Consensus 96 f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-----~~~~--~-------------~~iivviNK~Dl~~~~~~ 155 (410)
T 1kk1_A 96 LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL-----QIIG--Q-------------KNIIIAQNKIELVDKEKA 155 (410)
T ss_dssp HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH-----HHHT--C-------------CCEEEEEECGGGSCHHHH
T ss_pred HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH-----HHcC--C-------------CcEEEEEECccCCCHHHH
Confidence 887777777888999999999953 444444322 1111 1 57999999999866432
Q ss_pred -ecHHHHHHHHHH---hCCcEEEeccccCCC
Q psy1873 131 -ISYDEGKRLAES---WKAGFVEASAKQDDY 157 (157)
Q Consensus 131 -~~~~~~~~~~~~---~~~~~~e~Sa~~~~~ 157 (157)
...++...++.. .+++++++||++|+|
T Consensus 156 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~g 186 (410)
T 1kk1_A 156 LENYRQIKEFIEGTVAENAPIIPISALHGAN 186 (410)
T ss_dssp HHHHHHHHHHHTTSTTTTCCEEECBTTTTBS
T ss_pred HHHHHHHHHHHHhcCcCCCeEEEeeCCCCCC
Confidence 223445555543 357999999999986
No 163
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.78 E-value=1.2e-19 Score=137.73 Aligned_cols=101 Identities=18% Similarity=0.088 Sum_probs=60.8
Q ss_pred EEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh---hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEE
Q psy1873 43 YDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH---KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVL 118 (157)
Q Consensus 43 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~---~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~v 118 (157)
..+.+||+||+++|.......+..+|++|+|+|.++. .+|+...++...+..... .. +| ++|
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~-------------vp~iiv 186 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QG-------------INHLVV 186 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TT-------------CSSEEE
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cC-------------CCEEEE
Confidence 5689999999999998888889999999999999986 344322222222221111 11 76 999
Q ss_pred EEeCCCCCCCc------eecHHHHHHHHHHh-------CCcEEEeccccCCC
Q psy1873 119 VGNKKDLHMER------MISYDEGKRLAESW-------KAGFVEASAKQDDY 157 (157)
Q Consensus 119 v~nK~Dl~~~~------~~~~~~~~~~~~~~-------~~~~~e~Sa~~~~~ 157 (157)
++||+|+.... .....+...++... +++++++||++|+|
T Consensus 187 viNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~ 238 (467)
T 1r5b_A 187 VINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQN 238 (467)
T ss_dssp EEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBT
T ss_pred EEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccc
Confidence 99999985421 12234566666666 35799999999986
No 164
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.78 E-value=1.4e-19 Score=128.69 Aligned_cols=139 Identities=16% Similarity=0.142 Sum_probs=77.9
Q ss_pred CCCCCCChhhhHhhhhcccc-cccc-------cCCccceE-EEEEEECCeEEEEEEEeCCCCccC-------cCch----
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF-VDSY-------DPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-------SIFP---- 60 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~-~~~~-------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~---- 60 (157)
+|.+|+|||||+|+++.... ...+ .+|++... ...+..++..+.+.+|||+|.... ..+.
T Consensus 14 vG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~ 93 (274)
T 3t5d_A 14 VGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYID 93 (274)
T ss_dssp EECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHH
Confidence 69999999999999776544 3333 45665433 444455666678999999997332 2222
Q ss_pred ---hhhcc-------------CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCC
Q psy1873 61 ---AQYSM-------------DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKD 124 (157)
Q Consensus 61 ---~~~~~-------------~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~D 124 (157)
..++. .+|+++++++.+.......-..++..+.. . +|+++|+||+|
T Consensus 94 ~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-----~-------------~pvi~V~nK~D 155 (274)
T 3t5d_A 94 SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-----K-------------VNIIPLIAKAD 155 (274)
T ss_dssp HHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-----T-------------SCEEEEESSGG
T ss_pred HHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-----c-------------CCEEEEEeccC
Confidence 22222 26788888876542221222233333322 2 99999999999
Q ss_pred CCCCceec--HHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 125 LHMERMIS--YDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 125 l~~~~~~~--~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+....... ...........+++++++||++++|
T Consensus 156 ~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~ 190 (274)
T 3t5d_A 156 TLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEE 190 (274)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTTCCCCCC-------
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChh
Confidence 86533322 2334556667789999999998875
No 165
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.78 E-value=1.2e-19 Score=131.97 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=71.3
Q ss_pred ccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECC----------ChhhHHHHHHHHHHHH
Q psy1873 24 YDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSIT----------SHKSFEVVQILYDKLL 93 (157)
Q Consensus 24 ~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~~~~~~~~i~ 93 (157)
+.+|+|.. ...+.+ ..+.+++||++||++++.+|..++++++++|+|||++ +.+++++...|+..+.
T Consensus 145 ~~~TiGi~-~~~~~~--~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~ 221 (340)
T 4fid_A 145 RTKTTGIH-EYDFVV--KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIM 221 (340)
T ss_dssp CCCCCSCE-EEEEES--SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHH
T ss_pred ccceeeeE-EEEEEe--eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHh
Confidence 45666632 223333 3478999999999999999999999999999999999 7889999999999988
Q ss_pred HHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873 94 DMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH 126 (157)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~ 126 (157)
....... +|++|+|||+|+.
T Consensus 222 ~~~~~~~-------------~piiLv~NK~DL~ 241 (340)
T 4fid_A 222 TNEFLKG-------------AVKLIFLNKMDLF 241 (340)
T ss_dssp HCGGGTT-------------SEEEEEEECHHHH
T ss_pred hhhccCC-------------CeEEEEEECchhh
Confidence 7654333 9999999999985
No 166
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.77 E-value=3.1e-19 Score=132.98 Aligned_cols=139 Identities=16% Similarity=0.086 Sum_probs=91.6
Q ss_pred CCCCCCChhhhHhhhhccc-------cccc--cc-----CCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ-------FVDS--YD-----PTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM 65 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~-------~~~~--~~-----~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 65 (157)
+|..++|||||+++|++.. +... .. ...+... .....++.....+.+||+||+++|.......+.
T Consensus 9 iG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~ 88 (397)
T 1d2e_A 9 IGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTA 88 (397)
T ss_dssp ESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSS
T ss_pred EeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHh
Confidence 5999999999999998641 1100 00 0111111 112233344467899999999999888888899
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEEEEeCCCCCCCce---ecHHHHHHHHH
Q psy1873 66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVLVGNKKDLHMERM---ISYDEGKRLAE 141 (157)
Q Consensus 66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~vv~nK~Dl~~~~~---~~~~~~~~~~~ 141 (157)
.+|++|+|+|.++....+.. +++..+. .. . +| +++++||+|+..... ...++...++.
T Consensus 89 ~aD~~ilVvda~~g~~~qt~-e~l~~~~-~~---~-------------vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~ 150 (397)
T 1d2e_A 89 PLDGCILVVAANDGPMPQTR-EHLLLAR-QI---G-------------VEHVVVYVNKADAVQDSEMVELVELEIRELLT 150 (397)
T ss_dssp CCSEEEEEEETTTCSCHHHH-HHHHHHH-HT---T-------------CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHH
T ss_pred hCCEEEEEEECCCCCCHHHH-HHHHHHH-Hc---C-------------CCeEEEEEECcccCCCHHHHHHHHHHHHHHHH
Confidence 99999999999985443332 3333222 21 1 77 789999999864221 12345667777
Q ss_pred HhC-----CcEEEeccccCCC
Q psy1873 142 SWK-----AGFVEASAKQDDY 157 (157)
Q Consensus 142 ~~~-----~~~~e~Sa~~~~~ 157 (157)
.++ ++++++||++|+|
T Consensus 151 ~~~~~~~~~~~i~~SA~~g~n 171 (397)
T 1d2e_A 151 EFGYKGEETPIIVGSALCALE 171 (397)
T ss_dssp HTTSCTTTSCEEECCHHHHHT
T ss_pred HcCCCcccCcEEEeehhhccc
Confidence 776 5899999998753
No 167
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.77 E-value=3.2e-18 Score=120.96 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=80.3
Q ss_pred CCCCCCChhhhHhhhhcccc--cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhcc---------CCCE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF--VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM---------DIHG 69 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---------~~~~ 69 (157)
+|.+|+|||||+++|++..+ ...+.++........+..++ ..+.+|||||+.++......+++ .+++
T Consensus 42 vG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~ 119 (262)
T 3def_A 42 LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDV 119 (262)
T ss_dssp EECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECE
T ss_pred ECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCE
Confidence 69999999999999998775 33444443344455556666 46899999999988776555543 7899
Q ss_pred EEEEEECCChhhHHHH-HHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce
Q psy1873 70 YVLVYSITSHKSFEVV-QILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM 130 (157)
Q Consensus 70 ~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~ 130 (157)
+++|++++... +... ..|+..+........ ..|+++|+||+|+.+.+.
T Consensus 120 il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~------------~~~~ivv~nK~Dl~~~~~ 168 (262)
T 3def_A 120 LLYVDRLDVYA-VDELDKQVVIAITQTFGKEI------------WCKTLLVLTHAQFSPPDE 168 (262)
T ss_dssp EEEEEESSCSC-CCHHHHHHHHHHHHHHCGGG------------GGGEEEEEECTTCCCSTT
T ss_pred EEEEEcCCCCC-CCHHHHHHHHHHHHHhchhh------------hcCEEEEEeCcccCCCCC
Confidence 99999998755 4433 456666665543220 148999999999964433
No 168
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.77 E-value=1.3e-18 Score=134.95 Aligned_cols=106 Identities=20% Similarity=0.248 Sum_probs=75.3
Q ss_pred CCCCCCChhhhHhhhhccccccc----ccCCccceEEEEEE-------------ECCeEEEEEEEeCCCCccCcCchhhh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDS----YDPTIENTFVKTTR-------------MNNQDYDLKLVDTAGQDEYSIFPAQY 63 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~----~~~t~~~~~~~~~~-------------~~~~~~~~~i~D~~g~~~~~~~~~~~ 63 (157)
+|++++|||||+++|++..+... ..++++..+..... ++.....+.+|||||+++|..++...
T Consensus 11 vGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~r~ 90 (594)
T 1g7s_A 11 LGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRG 90 (594)
T ss_dssp ECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCSS
T ss_pred ECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHHHHHHH
Confidence 69999999999999997655432 22344432211000 00111248999999999999999999
Q ss_pred ccCCCEEEEEEECCC---hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q psy1873 64 SMDIHGYVLVYSITS---HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM 127 (157)
Q Consensus 64 ~~~~~~~ilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~ 127 (157)
++.+|++|+|+|+++ +++++.+.. +. . .. +|+++++||+|+..
T Consensus 91 ~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~-~---~~-------------vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 91 GALADLAILIVDINEGFKPQTQEALNI----LR-M---YR-------------TPFVVAANKIDRIH 136 (594)
T ss_dssp SBSCSEEEEEEETTTCCCHHHHHHHHH----HH-H---TT-------------CCEEEEEECGGGST
T ss_pred HhhCCEEEEEEECCCCccHhHHHHHHH----HH-H---cC-------------CeEEEEeccccccc
Confidence 999999999999999 777765542 11 1 12 99999999999854
No 169
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.76 E-value=5.5e-20 Score=139.81 Aligned_cols=134 Identities=24% Similarity=0.270 Sum_probs=89.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCCh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~ 79 (157)
+|+.++|||||+++|.+..+.....+++.... ...+..++ ..+.+|||||++.|..++...+..+|++|+|+|.++.
T Consensus 10 vGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g 87 (501)
T 1zo1_I 10 MGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDG 87 (501)
T ss_dssp EESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTB
T ss_pred ECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccC
Confidence 69999999999999998766544333222111 22223344 3578999999999999999999999999999999883
Q ss_pred ---hhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc--eecHH--HHHHHHHHhC--CcEEEe
Q psy1873 80 ---KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER--MISYD--EGKRLAESWK--AGFVEA 150 (157)
Q Consensus 80 ---~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~--~~~~~--~~~~~~~~~~--~~~~e~ 150 (157)
++.+.+. .+.. .. +|+++++||+|+.... .+... +...++..++ ++++++
T Consensus 88 ~~~qT~e~l~----~~~~----~~-------------vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~v 146 (501)
T 1zo1_I 88 VMPQTIEAIQ----HAKA----AQ-------------VPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHV 146 (501)
T ss_dssp SCTTTHHHHH----HHHH----TT-------------CCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEEC
T ss_pred ccHHHHHHHH----HHHh----cC-------------ceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEE
Confidence 4443332 1111 12 8999999999986421 11100 0011122233 689999
Q ss_pred ccccCCC
Q psy1873 151 SAKQDDY 157 (157)
Q Consensus 151 Sa~~~~~ 157 (157)
||++|+|
T Consensus 147 SAktG~g 153 (501)
T 1zo1_I 147 SAKAGTG 153 (501)
T ss_dssp CTTTCTT
T ss_pred eeeeccC
Confidence 9999986
No 170
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.76 E-value=6.3e-19 Score=130.07 Aligned_cols=128 Identities=9% Similarity=-0.048 Sum_probs=88.8
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK 80 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~ 80 (157)
+|.+++|||||+++|+. ...|+...+ .. +......+.+||+||+++|.......++.+|++|+|+| + ..
T Consensus 27 iG~~d~GKSTL~~~L~~------~giTi~~~~-~~--~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~-~g 95 (370)
T 2elf_A 27 IGTEKSGRTSLAANLGK------KGTSSDITM-YN--NDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-P-QG 95 (370)
T ss_dssp EESTTSSHHHHHHTTSE------EEEESSSEE-EE--ECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-T-TC
T ss_pred ECCCCCCHHHHHHHHHh------CCEEEEeeE-EE--EecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-C-CC
Confidence 59999999999999982 223333222 22 22233568999999999998777778899999999999 4 44
Q ss_pred hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcE-EEEEe-CCCCCCCceecH--HHHHHHHHHhC---CcEEE--ec
Q psy1873 81 SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPI-VLVGN-KKDLHMERMISY--DEGKRLAESWK---AGFVE--AS 151 (157)
Q Consensus 81 s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~-~vv~n-K~Dl~~~~~~~~--~~~~~~~~~~~---~~~~e--~S 151 (157)
...+..+++..+.... +|. ++++| |+|+ +...+.. ++...++...+ +++++ +|
T Consensus 96 ~~~qt~e~~~~~~~~~-----------------i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~S 157 (370)
T 2elf_A 96 LDAHTGECIIALDLLG-----------------FKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTN 157 (370)
T ss_dssp CCHHHHHHHHHHHHTT-----------------CCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCC
T ss_pred CcHHHHHHHHHHHHcC-----------------CCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 4555666655443322 676 88888 9999 5333222 44555555443 69999 99
Q ss_pred ccc---CCC
Q psy1873 152 AKQ---DDY 157 (157)
Q Consensus 152 a~~---~~~ 157 (157)
|++ |+|
T Consensus 158 A~~~~~g~g 166 (370)
T 2elf_A 158 KSAKNPFEG 166 (370)
T ss_dssp TTSSSTTTT
T ss_pred cccCcCCCC
Confidence 999 876
No 171
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.76 E-value=1.3e-19 Score=137.23 Aligned_cols=133 Identities=19% Similarity=0.091 Sum_probs=83.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCC--------CccCcCchhhhccCCCEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAG--------QDEYSIFPAQYSMDIHGYV 71 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~~~~~~~~~~i 71 (157)
||.+|||||||+|+|++..+... ..+.+... .....+......+.+|||+| ++.+......+++.+|++|
T Consensus 29 vG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il 107 (456)
T 4dcu_A 29 VGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVII 107 (456)
T ss_dssp ECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEE
T ss_pred ECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEE
Confidence 69999999999999998776311 12222111 22223333445789999999 5666677888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCC-cEEEe
Q psy1873 72 LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKA-GFVEA 150 (157)
Q Consensus 72 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~ 150 (157)
+|+|..+. +.....|+..++... . .|+++|+||+|+..... ....+ ..+++ ..+++
T Consensus 108 ~VvD~~~~--~~~~d~~l~~~l~~~---~-------------~pvilV~NK~D~~~~~~----~~~e~-~~lg~~~~~~i 164 (456)
T 4dcu_A 108 FMVNGREG--VTAADEEVAKILYRT---K-------------KPVVLAVNKLDNTEMRA----NIYDF-YSLGFGEPYPI 164 (456)
T ss_dssp EEEESSSC--SCHHHHHHHHHHTTC---C-------------SCEEEEEECC-------------CCS-GGGSSSSEEEC
T ss_pred EEEeCCCC--CChHHHHHHHHHHHc---C-------------CCEEEEEECccchhhhh----hHHHH-HHcCCCceEEe
Confidence 99998763 333445555555432 2 99999999999854321 11111 23454 57899
Q ss_pred ccccCCC
Q psy1873 151 SAKQDDY 157 (157)
Q Consensus 151 Sa~~~~~ 157 (157)
||++|.|
T Consensus 165 SA~~g~g 171 (456)
T 4dcu_A 165 SGTHGLG 171 (456)
T ss_dssp CTTTCTT
T ss_pred ecccccc
Confidence 9999976
No 172
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.75 E-value=2e-18 Score=132.42 Aligned_cols=106 Identities=17% Similarity=0.192 Sum_probs=74.6
Q ss_pred CCCCCCChhhhHhhhhcc------------------ccccc------ccCCccceEEEEEEECCeEEEEEEEeCCCCccC
Q psy1873 1 MGYRSVGKSSLSIQFVDG------------------QFVDS------YDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY 56 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~------------------~~~~~------~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 56 (157)
+|.+|+|||||+++|+.. .+.+. .-.|+. .....+..+ .+.+.+|||||+.+|
T Consensus 19 iG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~-~~~~~~~~~--~~~i~liDTPG~~df 95 (528)
T 3tr5_A 19 ISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVT-TSVMQFPYK--DYLINLLDTPGHADF 95 (528)
T ss_dssp EECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSS-SSEEEEEET--TEEEEEECCCCSTTC
T ss_pred ECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEE-EeEEEEEeC--CEEEEEEECCCchhH
Confidence 699999999999999621 01100 001111 112333344 467899999999999
Q ss_pred cCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q psy1873 57 SIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM 127 (157)
Q Consensus 57 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~ 127 (157)
......+++.+|++|+|+|.++..+.+....| ..+... . +|+++++||+|+..
T Consensus 96 ~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~~----~-------------iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 96 TEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRLR----H-------------TPIMTFINKMDRDT 148 (528)
T ss_dssp CHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHTT----T-------------CCEEEEEECTTSCC
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHHc----C-------------CCEEEEEeCCCCcc
Confidence 99999999999999999999987776665443 333222 2 99999999999854
No 173
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.74 E-value=1.9e-17 Score=116.03 Aligned_cols=138 Identities=12% Similarity=0.056 Sum_probs=82.9
Q ss_pred CCCCCCChhhhHhhhhcccccccccC---CccceEEEEEEECCeEEEEEEEeCCCCc--------cCcCchhhh----cc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDP---TIENTFVKTTRMNNQDYDLKLVDTAGQD--------EYSIFPAQY----SM 65 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~----~~ 65 (157)
||.+|||||||+|++++..+.....+ ++..........++ ..+.+|||||.. .+....... .+
T Consensus 27 vG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~ 104 (247)
T 3lxw_A 27 VGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAP 104 (247)
T ss_dssp ESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTT
T ss_pred ECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCC
Confidence 69999999999999998776433222 22222234445555 557899999963 232222222 38
Q ss_pred CCCEEEEEEECCChhhH-HHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCcee------cHHHHHH
Q psy1873 66 DIHGYVLVYSITSHKSF-EVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMI------SYDEGKR 138 (157)
Q Consensus 66 ~~~~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~------~~~~~~~ 138 (157)
++|++|+|+|+++.... ..+..++..+...... . .|++|++||.|+...... ..+..+.
T Consensus 105 ~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~-~-------------~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~ 170 (247)
T 3lxw_A 105 GPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVL-K-------------WMVIVFTRKEDLAGGSLHDYVSNTENRALRE 170 (247)
T ss_dssp CCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGG-G-------------GEEEEEECGGGGTTCCHHHHHHHCCCHHHHH
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhh-c-------------cEEEEEEchHhcCCCCHHHHHhhcccHHHHH
Confidence 99999999999853221 1223333333221111 2 899999999999653211 1134577
Q ss_pred HHHHhCCcEEEecccc
Q psy1873 139 LAESWKAGFVEASAKQ 154 (157)
Q Consensus 139 ~~~~~~~~~~e~Sa~~ 154 (157)
+.+..+..|..++++.
T Consensus 171 l~~~~g~~~~~~~~~~ 186 (247)
T 3lxw_A 171 LVAECGGRVCAFDNRA 186 (247)
T ss_dssp HHHHTTTCEEECCTTC
T ss_pred HHHHcCCeEEEEeCCC
Confidence 7788887777666543
No 174
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.73 E-value=7e-19 Score=126.20 Aligned_cols=98 Identities=19% Similarity=0.070 Sum_probs=61.8
Q ss_pred EEEEEEeCCCCcc-------------CcCchhhhccCCCEEE-EEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCC
Q psy1873 43 YDLKLVDTAGQDE-------------YSIFPAQYSMDIHGYV-LVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPT 108 (157)
Q Consensus 43 ~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i-lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~ 108 (157)
..+.+|||||... +..+...+++.++.+| +|+|.++..+......++..+ ....
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~----~~~~-------- 192 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV----DPQG-------- 192 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHH----CTTC--------
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHh----CCCC--------
Confidence 5789999999642 3345667888888776 689998755444333333332 2222
Q ss_pred CCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH--hC-CcEEEeccccCCC
Q psy1873 109 SCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES--WK-AGFVEASAKQDDY 157 (157)
Q Consensus 109 ~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~--~~-~~~~e~Sa~~~~~ 157 (157)
.|+++|+||+|+.+......+........ .+ .+++++||++|+|
T Consensus 193 -----~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~g 239 (299)
T 2aka_B 193 -----QRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDG 239 (299)
T ss_dssp -----SSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTS
T ss_pred -----CeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccc
Confidence 89999999999875444222222210011 13 3788999999986
No 175
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.73 E-value=6.3e-18 Score=115.29 Aligned_cols=134 Identities=13% Similarity=0.077 Sum_probs=81.0
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCccC----------cCchhhhc---cC
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY----------SIFPAQYS---MD 66 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~----------~~~~~~~~---~~ 66 (157)
+|++|||||||++++++..+.....++.+... ...+.+++ .+.+||++|.... ......++ ..
T Consensus 32 vG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (210)
T 1pui_A 32 AGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQS 108 (210)
T ss_dssp EECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHHHHHHCTT
T ss_pred ECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhc
Confidence 69999999999999998775444455555333 33333433 4678999997431 22222333 46
Q ss_pred CCEEEEEEECCChhhHHH--HHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCc--eecHHHHHHHHHH
Q psy1873 67 IHGYVLVYSITSHKSFEV--VQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMER--MISYDEGKRLAES 142 (157)
Q Consensus 67 ~~~~ilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~--~~~~~~~~~~~~~ 142 (157)
++++++++|++++.+... +..|+ .. .. .|+++++||+|+.... +.....+..++..
T Consensus 109 ~~~~~~v~d~~~~~~~~~~~~~~~~----~~---~~-------------~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~ 168 (210)
T 1pui_A 109 LQGLVVLMDIRHPLKDLDQQMIEWA----VD---SN-------------IAVLVLLTKADKLASGARKAQLNMVREAVLA 168 (210)
T ss_dssp EEEEEEEEETTSCCCHHHHHHHHHH----HH---TT-------------CCEEEEEECGGGSCHHHHHHHHHHHHHHHGG
T ss_pred ccEEEEEEECCCCCchhHHHHHHHH----HH---cC-------------CCeEEEEecccCCCchhHHHHHHHHHHHHHh
Confidence 789999999998655432 22222 11 12 8999999999986532 2223456666666
Q ss_pred hC--CcEEEeccccCCC
Q psy1873 143 WK--AGFVEASAKQDDY 157 (157)
Q Consensus 143 ~~--~~~~e~Sa~~~~~ 157 (157)
.+ +.++++||++++|
T Consensus 169 ~~~~~~~~~~Sal~~~~ 185 (210)
T 1pui_A 169 FNGDVQVETFSSLKKQG 185 (210)
T ss_dssp GCSCEEEEECBTTTTBS
T ss_pred cCCCCceEEEeecCCCC
Confidence 65 5789999999875
No 176
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.73 E-value=4.4e-18 Score=138.54 Aligned_cols=138 Identities=17% Similarity=0.132 Sum_probs=91.7
Q ss_pred CCCCCCChhhhHhhhhcccc-------cc-------cccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF-------VD-------SYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM 65 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~-------~~-------~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 65 (157)
+|.+++|||||+++|++... .. ....+.+.++ ...+.++.....+.+|||||+++|.......+.
T Consensus 302 IGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~mi~gas 381 (1289)
T 3avx_A 302 IGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAA 381 (1289)
T ss_dssp EESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHHHHHHTSC
T ss_pred EcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHHHHHHHh
Confidence 59999999999999986411 00 0011222111 112234444567899999999999888888899
Q ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc-EEEEEeCCCCCCCce---ecHHHHHHHHH
Q psy1873 66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP-IVLVGNKKDLHMERM---ISYDEGKRLAE 141 (157)
Q Consensus 66 ~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~vv~nK~Dl~~~~~---~~~~~~~~~~~ 141 (157)
.+|++|+|+|.++.... +..+++..+... . +| ++|++||+|+.+... ...++...++.
T Consensus 382 ~AD~aILVVDAtdGv~~-QTrEhL~ll~~l----g-------------IP~IIVVINKiDLv~d~e~le~i~eEi~elLk 443 (1289)
T 3avx_A 382 QMDGAILVVAATDGPMP-QTREHILLGRQV----G-------------VPYIIVFLNKCDMVDDEELLELVEMEVRELLS 443 (1289)
T ss_dssp CCSEEEEEEETTTCSCT-THHHHHHHHHHH----T-------------CSCEEEEEECCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hCCEEEEEEcCCccCcH-HHHHHHHHHHHc----C-------------CCeEEEEEeecccccchhhHHHHHHHHHHHHH
Confidence 99999999999986433 333444433322 1 77 899999999965322 12345667777
Q ss_pred HhC-----CcEEEeccccCC
Q psy1873 142 SWK-----AGFVEASAKQDD 156 (157)
Q Consensus 142 ~~~-----~~~~e~Sa~~~~ 156 (157)
.++ ++++++||++|.
T Consensus 444 ~~G~~~~~vp~IpvSAktG~ 463 (1289)
T 3avx_A 444 QYDFPGDDTPIVRGSALKAL 463 (1289)
T ss_dssp HTTSCTTTCCEEECCSTTTT
T ss_pred hccccccceeEEEEEeccCC
Confidence 776 689999999983
No 177
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.72 E-value=7.1e-17 Score=120.49 Aligned_cols=141 Identities=16% Similarity=0.137 Sum_probs=95.2
Q ss_pred CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCcc----CcCchhhh---ccCCCEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDE----YSIFPAQY---SMDIHGYVL 72 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~~~~il 72 (157)
||++|||||||++++.+... ...+..+........+.+++ ...+.+||++|... +..+...+ ...++.++.
T Consensus 163 VG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~ 241 (416)
T 1udx_A 163 VGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLY 241 (416)
T ss_dssp ECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEE
T ss_pred ECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhE
Confidence 69999999999999987643 22233222222223344443 24578999999743 23333333 356899999
Q ss_pred EEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEecc
Q psy1873 73 VYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152 (157)
Q Consensus 73 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 152 (157)
++|++ ...++++..|..++...... +...|.++++||+|+... ....+....+...+++++++||
T Consensus 242 vvDls-~~~~~~ls~g~~el~~la~a------------L~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 242 VLDAA-DEPLKTLETLRKEVGAYDPA------------LLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp EEETT-SCHHHHHHHHHHHHHHHCHH------------HHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCT
T ss_pred EeCCc-cCCHHHHHHHHHHHHHHhHH------------hhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEEC
Confidence 99998 66788887777777665321 011889999999998653 2334455566667889999999
Q ss_pred ccCCC
Q psy1873 153 KQDDY 157 (157)
Q Consensus 153 ~~~~~ 157 (157)
++++|
T Consensus 307 ~~g~g 311 (416)
T 1udx_A 307 LTGAG 311 (416)
T ss_dssp TTCTT
T ss_pred CCccC
Confidence 99986
No 178
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=124.76 Aligned_cols=139 Identities=17% Similarity=0.152 Sum_probs=80.1
Q ss_pred CCCCCCChhhhHhhhhccccccc-c-------cCCccceE-EEEEEECCeEEEEEEEeCCCCccCcC-------------
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDS-Y-------DPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSI------------- 58 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~-~-------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~------------- 58 (157)
||++|||||||+++|++..+... + .++++... ...+...+....+.+||++|...+..
T Consensus 37 vG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~ 116 (418)
T 2qag_C 37 VGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYID 116 (418)
T ss_dssp ECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHH
Confidence 69999999999999998766311 1 12222111 11112234445789999999765421
Q ss_pred ------------chhhhccCCCEEEEEEECCCh-hhHHHHH-HHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCC
Q psy1873 59 ------------FPAQYSMDIHGYVLVYSITSH-KSFEVVQ-ILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKD 124 (157)
Q Consensus 59 ------------~~~~~~~~~~~~ilv~d~~~~-~s~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~D 124 (157)
+...++.++++.+++|+.... .++..+. .|+..+. . . +|+++|+||+|
T Consensus 117 ~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~-~-------------v~iIlVinK~D 178 (418)
T 2qag_C 117 SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----E-K-------------VNIIPLIAKAD 178 (418)
T ss_dssp HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----T-T-------------SEEEEEEESTT
T ss_pred HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----c-c-------------CcEEEEEEccc
Confidence 123345667766677766654 4565554 4554442 1 2 89999999999
Q ss_pred CCCCceecH--HHHHHHHHHhCCcEEEeccccCCC
Q psy1873 125 LHMERMISY--DEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 125 l~~~~~~~~--~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
+...+.+.. .++..++..++++++++||++++|
T Consensus 179 ll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~ 213 (418)
T 2qag_C 179 TLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEE 213 (418)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTCCCCCCC------
T ss_pred CccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcC
Confidence 976666654 678888889999999999998764
No 179
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.71 E-value=4.8e-18 Score=125.05 Aligned_cols=98 Identities=13% Similarity=0.014 Sum_probs=68.5
Q ss_pred EEEEEEeCCCCccC-------------cCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCC
Q psy1873 43 YDLKLVDTAGQDEY-------------SIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTS 109 (157)
Q Consensus 43 ~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 109 (157)
..+.+||+||..++ ..+...++.+++++|+++|.++.+... ..|+. +........
T Consensus 136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~-l~~~~~~~~--------- 203 (360)
T 3t34_A 136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIK-ISREVDPSG--------- 203 (360)
T ss_dssp CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHH-HHHHSCTTC---------
T ss_pred CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHH-HHHHhcccC---------
Confidence 35789999998876 456677899999999999876543322 12222 223332222
Q ss_pred CCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccCC
Q psy1873 110 CVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156 (157)
Q Consensus 110 ~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 156 (157)
.|+++|+||+|+.+......+....+...++++|+++|+++++
T Consensus 204 ----~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~ 246 (360)
T 3t34_A 204 ----DRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQA 246 (360)
T ss_dssp ----TTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHH
T ss_pred ----CCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChH
Confidence 8999999999997655555555555566677899999998764
No 180
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.71 E-value=1.6e-18 Score=124.81 Aligned_cols=138 Identities=17% Similarity=0.159 Sum_probs=72.5
Q ss_pred CCCCCCChhhhHhhhhcc-cccccc--------cCCccceE-EEEEEECCeEEEEEEEeCCCC-------ccCcCchh--
Q psy1873 1 MGYRSVGKSSLSIQFVDG-QFVDSY--------DPTIENTF-VKTTRMNNQDYDLKLVDTAGQ-------DEYSIFPA-- 61 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~-~~~~~~--------~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~-------~~~~~~~~-- 61 (157)
||++|||||||++++.+. .+.... .++..... ...+..++....+.+||++|+ +.+..+..
T Consensus 24 vG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l 103 (301)
T 2qnr_A 24 VGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYI 103 (301)
T ss_dssp EEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTTHHHHH
T ss_pred ECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHH
Confidence 699999999999998764 443322 12222111 222233455678899999998 56665554
Q ss_pred -----hhccCCC-----------EEEEEEECCC-hhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCC
Q psy1873 62 -----QYSMDIH-----------GYVLVYSITS-HKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKD 124 (157)
Q Consensus 62 -----~~~~~~~-----------~~ilv~d~~~-~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~D 124 (157)
.++...+ +.+++|.... ..+++.+.. .++..... . .|+++|+||+|
T Consensus 104 ~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~---~~l~~l~~-~-------------~~iilV~~K~D 166 (301)
T 2qnr_A 104 DEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV---AFMKAIHN-K-------------VNIVPVIAKAD 166 (301)
T ss_dssp HHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH---HHHHHHTT-T-------------SCEEEEECCGG
T ss_pred HHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH---HHHHHHHh-c-------------CCEEEEEEeCC
Confidence 4433222 1123333321 223444431 22333222 2 78999999999
Q ss_pred CCCCcee--cHHHHHHHHHHhCCcEEEeccccC
Q psy1873 125 LHMERMI--SYDEGKRLAESWKAGFVEASAKQD 155 (157)
Q Consensus 125 l~~~~~~--~~~~~~~~~~~~~~~~~e~Sa~~~ 155 (157)
+...+++ ..++++.+++.++++++++||++|
T Consensus 167 l~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 199 (301)
T 2qnr_A 167 TLTLKERERLKKRILDEIEEHNIKIYHLPDAES 199 (301)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTTCCCCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc
Confidence 8764443 346788899999999999999987
No 181
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.70 E-value=5.9e-17 Score=114.89 Aligned_cols=114 Identities=17% Similarity=0.211 Sum_probs=75.3
Q ss_pred CCCCCCChhhhHhhhhccccc--ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCchhh---------hccCCCE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV--DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQ---------YSMDIHG 69 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~---------~~~~~~~ 69 (157)
+|.+|+|||||+|+|++..+. ..+.++........+..+ ...+.+|||||+.++..+... ....+|+
T Consensus 45 vG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~ 122 (270)
T 1h65_A 45 MGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDV 122 (270)
T ss_dssp EESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECE
T ss_pred ECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCE
Confidence 699999999999999987752 223333322223333334 466899999999877644331 1346899
Q ss_pred EEEEEECCChhhHHHH-HHHHHHHHHHhcc-ccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce
Q psy1873 70 YVLVYSITSHKSFEVV-QILYDKLLDMTGK-IQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM 130 (157)
Q Consensus 70 ~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~ 130 (157)
+|+|+|++.. ++... ..|+..+...... .. .|+++|+||+|+.+.+.
T Consensus 123 il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~-------------~~iivV~nK~Dl~~~~~ 171 (270)
T 1h65_A 123 LLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIW-------------NKAIVALTHAQFSPPDG 171 (270)
T ss_dssp EEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGG-------------GGEEEEEECCSCCCGGG
T ss_pred EEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccc-------------cCEEEEEECcccCCcCC
Confidence 9999999764 34433 4666666554322 11 68999999999965543
No 182
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.70 E-value=5.4e-17 Score=127.68 Aligned_cols=108 Identities=12% Similarity=0.066 Sum_probs=74.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCC----------------ccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPT----------------IENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQY 63 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t----------------~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 63 (157)
+|+.|+|||||+++|+..........+ .+..+ .....+....+.+.+||++|+.+|......+
T Consensus 15 iG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~ 94 (665)
T 2dy1_A 15 VGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGA 94 (665)
T ss_dssp EESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHH
T ss_pred ECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchHHHHHHH
Confidence 689999999999999853322111111 01112 2223333345788999999999999888899
Q ss_pred ccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873 64 SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH 126 (157)
Q Consensus 64 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~ 126 (157)
++.+|++++++|.++....+. ..++..+... . +|+++++||+|+.
T Consensus 95 l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~----~-------------ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 95 LEAADAALVAVSAEAGVQVGT-ERAWTVAERL----G-------------LPRMVVVTKLDKG 139 (665)
T ss_dssp HHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT----T-------------CCEEEEEECGGGC
T ss_pred HhhcCcEEEEEcCCcccchhH-HHHHHHHHHc----c-------------CCEEEEecCCchh
Confidence 999999999999887654333 3444444332 2 8999999999985
No 183
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.70 E-value=6.3e-17 Score=120.32 Aligned_cols=79 Identities=22% Similarity=0.093 Sum_probs=42.9
Q ss_pred CCCCCCChhhhHhhhhccccc-ccccCC-ccceEEE-EE-------------------EECC-eEEEEEEEeCCCCcc--
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV-DSYDPT-IENTFVK-TT-------------------RMNN-QDYDLKLVDTAGQDE-- 55 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~-~~~~~t-~~~~~~~-~~-------------------~~~~-~~~~~~i~D~~g~~~-- 55 (157)
||.+|||||||+|++++.... ..+..| +...... .+ .+++ ..+.+.+||++|..+
T Consensus 6 vG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~~~~a 85 (397)
T 1wxq_A 6 VGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPGA 85 (397)
T ss_dssp EECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC------
T ss_pred ECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCcccch
Confidence 699999999999999987642 233222 2222111 11 1233 246799999999854
Q ss_pred --CcCchh---hhccCCCEEEEEEECCCh
Q psy1873 56 --YSIFPA---QYSMDIHGYVLVYSITSH 79 (157)
Q Consensus 56 --~~~~~~---~~~~~~~~~ilv~d~~~~ 79 (157)
...+.. ..++.+|++++|+|.++.
T Consensus 86 ~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 86 HEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ---------CCCSSTTCSEEEEEEETTCC
T ss_pred hhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 233333 346899999999999875
No 184
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.70 E-value=1.6e-18 Score=134.64 Aligned_cols=99 Identities=19% Similarity=0.067 Sum_probs=56.1
Q ss_pred EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChh---hH---HHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc
Q psy1873 42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHK---SF---EVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP 115 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p 115 (157)
...+.||||||+.+|.......+..+|++|+|+|.++.. ++ ......+ .+..... +|
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l-~~~~~lg----------------ip 316 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA-YLLRALG----------------IS 316 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH-HHHHHSS----------------CC
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH-HHHHHcC----------------CC
Confidence 467899999999999988888899999999999998642 11 1111111 1222221 55
Q ss_pred -EEEEEeCCCCCCCcee----cHHHHHHHH-HHhCC-----cEEEeccccCCC
Q psy1873 116 -IVLVGNKKDLHMERMI----SYDEGKRLA-ESWKA-----GFVEASAKQDDY 157 (157)
Q Consensus 116 -~~vv~nK~Dl~~~~~~----~~~~~~~~~-~~~~~-----~~~e~Sa~~~~~ 157 (157)
++||+||+|+.+.... ...+...+. ...++ +++++||++|+|
T Consensus 317 ~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~g 369 (592)
T 3mca_A 317 EIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTN 369 (592)
T ss_dssp CEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSS
T ss_pred eEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcc
Confidence 9999999998652211 122333444 33454 799999999986
No 185
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.68 E-value=1.2e-16 Score=122.78 Aligned_cols=137 Identities=15% Similarity=0.149 Sum_probs=86.2
Q ss_pred CCCCCCChhhhHhhhhccc--c------ccc------------ccCCccceE-EEEEEECCeEEEEEEEeCCCCccCcCc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ--F------VDS------------YDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIF 59 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~--~------~~~------------~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~ 59 (157)
+|.+++|||||+++|+... + ... ...+.+... .....+....+.+.+|||||+.+|...
T Consensus 19 iG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~df~~~ 98 (529)
T 2h5e_A 19 ISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSED 98 (529)
T ss_dssp EECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCSTTCCHH
T ss_pred ECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCChhHHHH
Confidence 6999999999999998531 1 000 000111111 111122223467899999999999988
Q ss_pred hhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHH
Q psy1873 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRL 139 (157)
Q Consensus 60 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~ 139 (157)
...++..+|++|+|+|.++....+ ...+........ +|+++++||+|+..... .+....+
T Consensus 99 ~~~~l~~aD~~IlVvDa~~g~~~~-----t~~~~~~~~~~~-------------ipiivviNK~Dl~~~~~--~~~~~~i 158 (529)
T 2h5e_A 99 TYRTLTAVDCCLMVIDAAKGVEDR-----TRKLMEVTRLRD-------------TPILTFMNKLDRDIRDP--MELLDEV 158 (529)
T ss_dssp HHHGGGGCSEEEEEEETTTCSCHH-----HHHHHHHHTTTT-------------CCEEEEEECTTSCCSCH--HHHHHHH
T ss_pred HHHHHHHCCEEEEEEeCCccchHH-----HHHHHHHHHHcC-------------CCEEEEEcCcCCccccH--HHHHHHH
Confidence 888999999999999998864322 222333332222 99999999999865432 3445566
Q ss_pred HHHhCCc-----EEEeccccCCC
Q psy1873 140 AESWKAG-----FVEASAKQDDY 157 (157)
Q Consensus 140 ~~~~~~~-----~~e~Sa~~~~~ 157 (157)
...++.. +..+|+++++|
T Consensus 159 ~~~l~~~~~~~~~pi~sa~~~~G 181 (529)
T 2h5e_A 159 ENELKIGCAPITWPIGCGKLFKG 181 (529)
T ss_dssp HHHHCCEEEESEEEESCGGGCCE
T ss_pred HHHhCCCccceecceecccCcce
Confidence 6666753 44567777654
No 186
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.65 E-value=1.2e-15 Score=111.83 Aligned_cols=153 Identities=17% Similarity=0.131 Sum_probs=91.3
Q ss_pred CCCCCCChhhhHhhhhccccc-ccccC-CccceEEEEEEECCe---------------EEEEEEEeCCCCccCc----Cc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV-DSYDP-TIENTFVKTTRMNNQ---------------DYDLKLVDTAGQDEYS----IF 59 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~-~~~~~-t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~----~~ 59 (157)
||.+|||||||+|++++..+. ..+.. |+.... ..+.+++. ...+.+||++|..++. .+
T Consensus 8 VG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~-g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl 86 (363)
T 1jal_A 8 VGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNT-GVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGL 86 (363)
T ss_dssp ECCTTSSHHHHHHHHHHTC------CCCCCCCCS-SEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGG
T ss_pred ECCCCCCHHHHHHHHHCCCCcccCCCCceECceE-EEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccccchH
Confidence 699999999999999987643 22322 333222 22344442 1568999999998763 33
Q ss_pred hh---hhccCCCEEEEEEECCCh----------hhHHHHHHHHHHHH---------------HHhcc-------------
Q psy1873 60 PA---QYSMDIHGYVLVYSITSH----------KSFEVVQILYDKLL---------------DMTGK------------- 98 (157)
Q Consensus 60 ~~---~~~~~~~~~ilv~d~~~~----------~s~~~~~~~~~~i~---------------~~~~~------------- 98 (157)
.. .+++.+|++++|+|.++. +.++.+..+..++. .....
T Consensus 87 ~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~~~l~ 166 (363)
T 1jal_A 87 GNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFELSVME 166 (363)
T ss_dssp TCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHHHHHH
Confidence 33 347899999999999862 23443332222221 10000
Q ss_pred -------ccCC-----CCCC------CCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEecccc
Q psy1873 99 -------IQNS-----SVKS------PTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154 (157)
Q Consensus 99 -------~~~~-----~~~~------~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 154 (157)
...+ +... .-..+...|+++++|+.|..-...........++...+++++.+||+.
T Consensus 167 ~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 167 KILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp HHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred HHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 0000 0000 012355699999999999642223345667788888899999999875
No 187
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.65 E-value=2.2e-17 Score=119.28 Aligned_cols=96 Identities=14% Similarity=0.062 Sum_probs=56.6
Q ss_pred EEEEEEeCCCCcc-------------CcCchhhhccCCCEEEEEEECCChhhH-HHHHHHHHHHHHHhccccCCCCCCCC
Q psy1873 43 YDLKLVDTAGQDE-------------YSIFPAQYSMDIHGYVLVYSITSHKSF-EVVQILYDKLLDMTGKIQNSSVKSPT 108 (157)
Q Consensus 43 ~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~ilv~d~~~~~s~-~~~~~~~~~i~~~~~~~~~~~~~~~~ 108 (157)
..+.+|||||..+ +......++..+|++++|+|.++.... .....+ ........
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i----~~~~~~~~-------- 198 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQL----AKEVDPEG-------- 198 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHH----HHHHCSSC--------
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHH----HHHhCCCC--------
Confidence 4689999999754 334466688999999999997543211 111111 12222222
Q ss_pred CCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEeccccC
Q psy1873 109 SCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155 (157)
Q Consensus 109 ~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 155 (157)
.|+++|+||+|+........+........++..|+++|++++
T Consensus 199 -----~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa 240 (315)
T 1jwy_B 199 -----KRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQ 240 (315)
T ss_dssp -----SSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCH
T ss_pred -----CcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCCh
Confidence 899999999998754432222222111122367888887764
No 188
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.65 E-value=1.7e-16 Score=125.42 Aligned_cols=68 Identities=15% Similarity=0.219 Sum_probs=50.4
Q ss_pred EEEEEeCCCCcc---CcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEE
Q psy1873 44 DLKLVDTAGQDE---YSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120 (157)
Q Consensus 44 ~~~i~D~~g~~~---~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~ 120 (157)
.+.+|||||... .......+++.+|++|+|+|.+++.+......|...+. ... .|+++|+
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~----~~~-------------~~iiiVl 237 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK----GRG-------------LTVFFLV 237 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT----TSC-------------CCEEEEE
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH----hhC-------------CCEEEEE
Confidence 578999999654 33456678899999999999998877776654433321 112 7899999
Q ss_pred eCCCCCCC
Q psy1873 121 NKKDLHME 128 (157)
Q Consensus 121 nK~Dl~~~ 128 (157)
||+|+...
T Consensus 238 NK~Dl~~~ 245 (695)
T 2j69_A 238 NAWDQVRE 245 (695)
T ss_dssp ECGGGGGG
T ss_pred ECcccccc
Confidence 99998644
No 189
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.60 E-value=2.1e-15 Score=119.07 Aligned_cols=106 Identities=17% Similarity=0.184 Sum_probs=74.7
Q ss_pred CCCCCCChhhhHhhhhccccc--------c------------cccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCch
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV--------D------------SYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~--------~------------~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 60 (157)
+|.+|+|||||+++|+..... . ....|+... ...+..+ .+.+.+|||+|+.+|...+
T Consensus 18 vG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~-~~~~~~~--~~~i~liDTPG~~df~~~~ 94 (691)
T 1dar_A 18 AAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA-VTTCFWK--DHRINIIDTPGHVDFTIEV 94 (691)
T ss_dssp EECTTSCHHHHHHHHHHHHCC----------------------------CC-EEEEEET--TEEEEEECCCSSTTCHHHH
T ss_pred ECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc-eEEEEEC--CeEEEEEECcCccchHHHH
Confidence 699999999999999842110 0 111222211 2223333 4678999999999999999
Q ss_pred hhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q psy1873 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM 127 (157)
Q Consensus 61 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~ 127 (157)
..+++.+|++|+|+|.++..+.+....|. .+... . +|+++++||+|+..
T Consensus 95 ~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~~----~-------------~p~ivviNKiD~~~ 143 (691)
T 1dar_A 95 ERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEKY----K-------------VPRIAFANKMDKTG 143 (691)
T ss_dssp HHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHHT----T-------------CCEEEEEECTTSTT
T ss_pred HHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHHc----C-------------CCEEEEEECCCccc
Confidence 99999999999999999988777665543 23222 2 99999999999864
No 190
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.57 E-value=3.9e-14 Score=101.94 Aligned_cols=88 Identities=14% Similarity=0.087 Sum_probs=72.9
Q ss_pred CccCcCchhhhccCCCEEEEEEECCChh-hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCcee
Q psy1873 53 QDEYSIFPAQYSMDIHGYVLVYSITSHK-SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMI 131 (157)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~ 131 (157)
++++..+.+.++.++|++++|+|++++. +++.+.+|+..+... . +|+++|+||+|+.+.+.+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~----~-------------~~~ilV~NK~DL~~~~~v 128 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYF----K-------------VEPVIVFNKIDLLNEEEK 128 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHT----T-------------CEEEEEECCGGGCCHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhC----C-------------CCEEEEEEcccCCCcccc
Confidence 7888888889999999999999999987 899899998865431 2 999999999999765433
Q ss_pred c-HHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 132 S-YDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 132 ~-~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
. .++...+++..+++++++||++|+|
T Consensus 129 ~~~~~~~~~~~~~g~~~~~~SA~~g~g 155 (302)
T 2yv5_A 129 KELERWISIYRDAGYDVLKVSAKTGEG 155 (302)
T ss_dssp HHHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 3 4556677777899999999999986
No 191
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.56 E-value=5.1e-18 Score=117.11 Aligned_cols=44 Identities=23% Similarity=0.018 Sum_probs=35.1
Q ss_pred CcEEEEEeCCCCCCCceecHHHHHHHHHHh--CCcEEEeccccCCC
Q psy1873 114 VPIVLVGNKKDLHMERMISYDEGKRLAESW--KAGFVEASAKQDDY 157 (157)
Q Consensus 114 ~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~e~Sa~~~~~ 157 (157)
.|.++|+||+|+.+.+.+..++...+++.+ +++++++||++|+|
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 210 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEG 210 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTT
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCC
Confidence 678999999998654445667777777765 57999999999986
No 192
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.55 E-value=1.9e-16 Score=116.29 Aligned_cols=98 Identities=21% Similarity=0.094 Sum_probs=53.7
Q ss_pred EEEEEEeCCCCcc-------------CcCchhhhccCCCEEEE-EEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCC
Q psy1873 43 YDLKLVDTAGQDE-------------YSIFPAQYSMDIHGYVL-VYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPT 108 (157)
Q Consensus 43 ~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~il-v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~ 108 (157)
..+.+|||||... +..+...++..++.+|+ +.|.+..-.-..... +........
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~----i~~~~~~~~-------- 197 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK----VAKEVDPQG-------- 197 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH----HHHHHCTTC--------
T ss_pred CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH----HHHHhCcCC--------
Confidence 5689999999643 33455667766665555 445543211111112 222222222
Q ss_pred CCCCCCcEEEEEeCCCCCCCceecHHHHHH--HHHHhC-CcEEEeccccCCC
Q psy1873 109 SCVSSVPIVLVGNKKDLHMERMISYDEGKR--LAESWK-AGFVEASAKQDDY 157 (157)
Q Consensus 109 ~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~--~~~~~~-~~~~e~Sa~~~~~ 157 (157)
.|+++|+||+|+.+........... +...++ .+++++||++|+|
T Consensus 198 -----~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~ 244 (353)
T 2x2e_A 198 -----QRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDG 244 (353)
T ss_dssp -----TTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHT
T ss_pred -----CceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccc
Confidence 8999999999986543311111110 111123 2678899998764
No 193
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.55 E-value=3.3e-15 Score=102.60 Aligned_cols=89 Identities=20% Similarity=0.118 Sum_probs=57.6
Q ss_pred EEEEEEeCCCCccCcCchhhhc-cCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEe
Q psy1873 43 YDLKLVDTAGQDEYSIFPAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN 121 (157)
Q Consensus 43 ~~~~i~D~~g~~~~~~~~~~~~-~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~n 121 (157)
+.+.+||++|+... +.++ ...+.+++|+|+++.... ...+. ... . .|+++++|
T Consensus 109 ~d~iiidt~G~~~~----~~~~~~~~~~~i~vvd~~~~~~~--~~~~~----~~~---~-------------~~~iiv~N 162 (221)
T 2wsm_A 109 CDLLLIENVGNLIC----PVDFDLGENYRVVMVSVTEGDDV--VEKHP----EIF---R-------------VADLIVIN 162 (221)
T ss_dssp CSEEEEEEEEBSSG----GGGCCCSCSEEEEEEEGGGCTTH--HHHCH----HHH---H-------------TCSEEEEE
T ss_pred CCEEEEeCCCCCCC----CchhccccCcEEEEEeCCCcchh--hhhhh----hhh---h-------------cCCEEEEe
Confidence 56789999986211 1111 246789999998765421 11111 111 1 88999999
Q ss_pred CCCCCCCceecHHHHHHHHHHhC--CcEEEeccccCCC
Q psy1873 122 KKDLHMERMISYDEGKRLAESWK--AGFVEASAKQDDY 157 (157)
Q Consensus 122 K~Dl~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~~ 157 (157)
|+|+.+.+....++...+++..+ ++++++||++|+|
T Consensus 163 K~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~g 200 (221)
T 2wsm_A 163 KVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKG 200 (221)
T ss_dssp CGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBT
T ss_pred cccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCC
Confidence 99985433345566666666654 7899999999986
No 194
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.55 E-value=4.2e-14 Score=104.11 Aligned_cols=154 Identities=17% Similarity=0.174 Sum_probs=88.9
Q ss_pred CCCCCCChhhhHhhhhcccc-cccccC-CccceEEEEEEECC-------------------eEEEEEEEeCCCCccCc--
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF-VDSYDP-TIENTFVKTTRMNN-------------------QDYDLKLVDTAGQDEYS-- 57 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~-~~~~~~-t~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~~~~~-- 57 (157)
||.+|||||||++++++... ...+.. |+..... ...+++ ....+++||++|..++.
T Consensus 7 VG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g-~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 85 (368)
T 2dby_A 7 VGLPNVGKSTLFNALTRANALAANYPFATIDKNVG-VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKGAHK 85 (368)
T ss_dssp ECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE-EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCCCCS
T ss_pred ECCCCCCHHHHHHHHhCCCCcccCCCCceecccee-eEecChHHHHHHHHHhcccccccccCCceEEEEECCCccccccc
Confidence 69999999999999997653 222222 3332221 112221 23568999999987653
Q ss_pred --Cchh---hhccCCCEEEEEEECCCh----------hhHHHHHHH---------------HHHHHHHhcc---------
Q psy1873 58 --IFPA---QYSMDIHGYVLVYSITSH----------KSFEVVQIL---------------YDKLLDMTGK--------- 98 (157)
Q Consensus 58 --~~~~---~~~~~~~~~ilv~d~~~~----------~s~~~~~~~---------------~~~i~~~~~~--------- 98 (157)
.+.. ..++.+|++++|+|.++. +.++.+..+ +.++......
T Consensus 86 ~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~~~~~ 165 (368)
T 2dby_A 86 GEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERLPLLE 165 (368)
T ss_dssp SSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred cchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHHHHHH
Confidence 2332 347899999999999862 122222111 1111000000
Q ss_pred ----------ccCCCCC-C----------CCCCCCCCcEEEEEeCCCC--CCC-ceecHHHHHHHHHHhCCcEEEecccc
Q psy1873 99 ----------IQNSSVK-S----------PTSCVSSVPIVLVGNKKDL--HME-RMISYDEGKRLAESWKAGFVEASAKQ 154 (157)
Q Consensus 99 ----------~~~~~~~-~----------~~~~~~~~p~~vv~nK~Dl--~~~-~~~~~~~~~~~~~~~~~~~~e~Sa~~ 154 (157)
....... . .-..+...|+++++||.|. .+. +.......+.+++..+++++++||++
T Consensus 166 ~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~ 245 (368)
T 2dby_A 166 AAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARL 245 (368)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHH
T ss_pred HHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechh
Confidence 0000000 0 0112455899999999973 222 13445667888888899999999987
Q ss_pred C
Q psy1873 155 D 155 (157)
Q Consensus 155 ~ 155 (157)
+
T Consensus 246 E 246 (368)
T 2dby_A 246 E 246 (368)
T ss_dssp H
T ss_pred H
Confidence 4
No 195
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.55 E-value=7e-15 Score=118.29 Aligned_cols=108 Identities=21% Similarity=0.243 Sum_probs=77.2
Q ss_pred CCCCCCChhhhHhhhhccc------------ccc------cccCCccceE-EEEEE------------ECCeEEEEEEEe
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ------------FVD------SYDPTIENTF-VKTTR------------MNNQDYDLKLVD 49 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~------------~~~------~~~~t~~~~~-~~~~~------------~~~~~~~~~i~D 49 (157)
||..++|||||+++|+... +.+ ....|+.... ..... .++..+.+.+||
T Consensus 25 iG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~liD 104 (842)
T 1n0u_A 25 IAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLID 104 (842)
T ss_dssp ECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEEC
T ss_pred ECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCceEEEEE
Confidence 6999999999999998641 111 0011222111 11111 234578899999
Q ss_pred CCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873 50 TAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH 126 (157)
Q Consensus 50 ~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~ 126 (157)
|+|+.+|...+..+++.+|++|+|+|+++..+++....|. .+... . +|+++++||+|+.
T Consensus 105 TPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~~----~-------------~p~ilviNK~D~~ 163 (842)
T 1n0u_A 105 SPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-QALGE----R-------------IKPVVVINKVDRA 163 (842)
T ss_dssp CCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH-HHHHT----T-------------CEEEEEEECHHHH
T ss_pred CcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHHc----C-------------CCeEEEEECCCcc
Confidence 9999999999999999999999999999988888765543 22221 2 8999999999985
No 196
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.54 E-value=1.6e-15 Score=117.01 Aligned_cols=111 Identities=15% Similarity=0.158 Sum_probs=73.3
Q ss_pred CCCCCCChhhhHhhhhccccc---ccccCCccceEEEEEEECCe-------------------------------E----
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV---DSYDPTIENTFVKTTRMNNQ-------------------------------D---- 42 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~-------------------------------~---- 42 (157)
+|.+|+|||||+|+|++..+. ....+++... ..+..+.. .
T Consensus 71 vG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~--~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~~~~~ 148 (550)
T 2qpt_A 71 AGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCF--VAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFMCAQL 148 (550)
T ss_dssp EEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSE--EEEECCSSSEEECCC------------------CCCTTEEEEEC
T ss_pred ECCCCCCHHHHHHHHhCCccccCccCCCCccceE--EEEEECCcccccCCceeeecCcccHHHHhhhcccccccceEEec
Confidence 599999999999999998763 2223332110 00000000 0
Q ss_pred -----EEEEEEeCCCCcc-----------CcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCC
Q psy1873 43 -----YDLKLVDTAGQDE-----------YSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKS 106 (157)
Q Consensus 43 -----~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~ 106 (157)
..+.+|||+|... +......++..+|++|+|+|.++....+....|+..+.. ..
T Consensus 149 ~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~------ 218 (550)
T 2qpt_A 149 PNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HE------ 218 (550)
T ss_dssp CCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CG------
T ss_pred cccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cC------
Confidence 2578999999764 334556678899999999999886555555555554432 12
Q ss_pred CCCCCCCCcEEEEEeCCCCCCCce
Q psy1873 107 PTSCVSSVPIVLVGNKKDLHMERM 130 (157)
Q Consensus 107 ~~~~~~~~p~~vv~nK~Dl~~~~~ 130 (157)
.|+++|+||+|+....+
T Consensus 219 -------~pvilVlNK~Dl~~~~e 235 (550)
T 2qpt_A 219 -------DKIRVVLNKADMVETQQ 235 (550)
T ss_dssp -------GGEEEEEECGGGSCHHH
T ss_pred -------CCEEEEEECCCccCHHH
Confidence 88999999999875433
No 197
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.54 E-value=2.6e-14 Score=112.91 Aligned_cols=129 Identities=16% Similarity=0.131 Sum_probs=84.5
Q ss_pred CCCCCCChhhhHhhhhcc--cccc-----------c-------ccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCch
Q psy1873 1 MGYRSVGKSSLSIQFVDG--QFVD-----------S-------YDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~--~~~~-----------~-------~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 60 (157)
+|.+|+|||||+++|+.. .+.. . ...|+... ...+..++ +.+.+|||+|+.+|....
T Consensus 16 vG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~-~~~~~~~~--~~i~liDTPG~~df~~~~ 92 (693)
T 2xex_A 16 MAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSA-ATTAAWEG--HRVNIIDTPGHVDFTVEV 92 (693)
T ss_dssp ECCGGGTHHHHHHHHHHHHSSCC-------------------------CCS-EEEEEETT--EEEEEECCCCCSSCCHHH
T ss_pred ECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeee-eEEEEECC--eeEEEEECcCCcchHHHH
Confidence 699999999999999852 2110 0 01111111 22333443 678999999999999888
Q ss_pred hhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHH
Q psy1873 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLA 140 (157)
Q Consensus 61 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~ 140 (157)
..+++.+|++|+|+|.++..+.+....| ..+... . +|+++++||+|+.... .......+.
T Consensus 93 ~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~~----~-------------~p~ilviNK~Dl~~~~--~~~~~~~l~ 152 (693)
T 2xex_A 93 ERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATTY----G-------------VPRIVFVNKMDKLGAN--FEYSVSTLH 152 (693)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHHT----T-------------CCEEEEEECTTSTTCC--HHHHHHHHH
T ss_pred HHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHHc----C-------------CCEEEEEECCCccccc--hHHHHHHHH
Confidence 9999999999999999988777665444 333322 2 9999999999986532 122233444
Q ss_pred HHhCC----cEEEecc
Q psy1873 141 ESWKA----GFVEASA 152 (157)
Q Consensus 141 ~~~~~----~~~e~Sa 152 (157)
..++. ..+.+|+
T Consensus 153 ~~l~~~~~~~~ipisa 168 (693)
T 2xex_A 153 DRLQANAAPIQLPIGA 168 (693)
T ss_dssp HHHCCCEEESEEEECC
T ss_pred HHhCCCceeEEeeccc
Confidence 44443 3556665
No 198
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.48 E-value=5.3e-15 Score=108.67 Aligned_cols=90 Identities=16% Similarity=0.184 Sum_probs=57.8
Q ss_pred EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEe
Q psy1873 42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN 121 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~n 121 (157)
.+.+.||||+|... ........+|++++|+|.+..+.++.+... ..+.|+++|+|
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~----------------------~~~~p~ivVlN 225 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG----------------------VLELADIVVVN 225 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT----------------------SGGGCSEEEEE
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh----------------------HhhcCCEEEEE
Confidence 36789999999432 233455889999999998766544322210 11278999999
Q ss_pred CCCCCCCceecHHHHHHHHHH---h-------CCcEEEeccccCCC
Q psy1873 122 KKDLHMERMISYDEGKRLAES---W-------KAGFVEASAKQDDY 157 (157)
Q Consensus 122 K~Dl~~~~~~~~~~~~~~~~~---~-------~~~~~e~Sa~~~~~ 157 (157)
|+|+....... .....+... . +.+++++||++|+|
T Consensus 226 K~Dl~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~G 270 (355)
T 3p32_A 226 KADGEHHKEAR-LAARELSAAIRLIYPREALWRPPVLTMSAVEGRG 270 (355)
T ss_dssp CCCGGGHHHHH-HHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBS
T ss_pred CCCCcChhHHH-HHHHHHHHHHhhccccccCCCCceEEEEcCCCCC
Confidence 99985432221 112222222 1 57899999999986
No 199
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.46 E-value=5.6e-13 Score=105.55 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=74.5
Q ss_pred CCCCCCChhhhHhhhhccc--ccc------------------cccCCccceEEEEEEEC-----CeEEEEEEEeCCCCcc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ--FVD------------------SYDPTIENTFVKTTRMN-----NQDYDLKLVDTAGQDE 55 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~--~~~------------------~~~~t~~~~~~~~~~~~-----~~~~~~~i~D~~g~~~ 55 (157)
+|..++|||||+++|+... +.. ....|+... ...+.++ +..+.+.+|||+|+.+
T Consensus 16 iG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~-~~~~~~~~~~~~~~~~~i~liDTPG~~d 94 (704)
T 2rdo_7 16 SAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSA-ATTAFWSGMAKQYEPHRINIIDTPGHVD 94 (704)
T ss_pred ECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeec-eEEEEECCccccCCceeEEEEeCCCccc
Confidence 6999999999999997431 110 001121111 1122222 3347899999999999
Q ss_pred CcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q psy1873 56 YSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME 128 (157)
Q Consensus 56 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~ 128 (157)
|.......++.+|++|+|+|.++....+....| ..+... . +|+++++||+|+...
T Consensus 95 f~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~~----~-------------ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 95 FTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANKY----K-------------VPRIAFVNKMDRMGA 149 (704)
T ss_pred hHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHHc----C-------------CCEEEEEeCCCcccc
Confidence 999899999999999999999987665544333 332221 2 899999999998653
No 200
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.40 E-value=2.1e-14 Score=105.30 Aligned_cols=89 Identities=15% Similarity=0.209 Sum_probs=50.3
Q ss_pred EEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeC
Q psy1873 43 YDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122 (157)
Q Consensus 43 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK 122 (157)
+.+.++||+|.... .......+|++++|+|.++....+.+.. .+ .+.|.++|+||
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-------------------l~~~~ivVlNK 221 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-------------------IEMADLVAVTK 221 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC----------------------------------CCSCSEEEECC
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-------------------HhcCCEEEEee
Confidence 56789999995321 2445678999999999987644332211 11 11678999999
Q ss_pred CCCCCCceecHHHHHHHHH----------HhCCcEEEeccccCCC
Q psy1873 123 KDLHMERMISYDEGKRLAE----------SWKAGFVEASAKQDDY 157 (157)
Q Consensus 123 ~Dl~~~~~~~~~~~~~~~~----------~~~~~~~e~Sa~~~~~ 157 (157)
+|+.+..... .....+.. .++.+++.+||++|+|
T Consensus 222 ~Dl~~~~~~~-~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~G 265 (349)
T 2www_A 222 SDGDLIVPAR-RIQAEYVSALKLLRKRSQVWKPKVIRISARSGEG 265 (349)
T ss_dssp CSGGGHHHHH-HHHHHHHHHHTTCC-----CCCEEEECCTTTCTT
T ss_pred ecCCCchhHH-HHHHHHHHHHHhcCccccCCCceEEEEecCCCCC
Confidence 9985421110 11222221 1245789999999986
No 201
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.40 E-value=6.6e-13 Score=93.32 Aligned_cols=72 Identities=22% Similarity=0.068 Sum_probs=41.1
Q ss_pred EEEEEEeCCCCccCcCchh------hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcE
Q psy1873 43 YDLKLVDTAGQDEYSIFPA------QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPI 116 (157)
Q Consensus 43 ~~~~i~D~~g~~~~~~~~~------~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~ 116 (157)
+.+.+|||+|+........ ..+.+ ++++++.|.....+................... .|+
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~-------------~p~ 174 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLG-------------ATT 174 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHT-------------SCE
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccC-------------CCe
Confidence 5789999999876543322 13455 777888876543222222111111111111112 899
Q ss_pred EEEEeCCCCCCC
Q psy1873 117 VLVGNKKDLHME 128 (157)
Q Consensus 117 ~vv~nK~Dl~~~ 128 (157)
++|+||+|+...
T Consensus 175 ~iv~NK~D~~~~ 186 (262)
T 1yrb_A 175 IPALNKVDLLSE 186 (262)
T ss_dssp EEEECCGGGCCH
T ss_pred EEEEeccccccc
Confidence 999999998653
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.35 E-value=9e-14 Score=101.62 Aligned_cols=91 Identities=13% Similarity=0.160 Sum_probs=53.7
Q ss_pred EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEe
Q psy1873 42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN 121 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~n 121 (157)
.+.+.+|||+|..... ......+|++++|+|.+..+.++.+.. ... . .|.++|+|
T Consensus 148 ~~~i~liDTpG~~~~~---~~~~~~aD~vl~Vvd~~~~~~~~~l~~------~~~---~-------------~p~ivv~N 202 (341)
T 2p67_A 148 GYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKK------GLM---E-------------VADLIVIN 202 (341)
T ss_dssp TCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCH------HHH---H-------------HCSEEEEC
T ss_pred CCCEEEEeCCCccchH---HHHHHhCCEEEEEEeCCccHHHHHHHH------hhh---c-------------ccCEEEEE
Confidence 3578999999965433 234689999999999876544321111 000 1 78899999
Q ss_pred CCCCCCCceecH--HHHHHHHHHh-------CCcEEEeccccCCC
Q psy1873 122 KKDLHMERMISY--DEGKRLAESW-------KAGFVEASAKQDDY 157 (157)
Q Consensus 122 K~Dl~~~~~~~~--~~~~~~~~~~-------~~~~~e~Sa~~~~~ 157 (157)
|+|+.....+.. .+........ ..+++++||++|+|
T Consensus 203 K~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~g 247 (341)
T 2p67_A 203 KDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRG 247 (341)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBS
T ss_pred CCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCC
Confidence 999865322211 1222222222 35789999999986
No 203
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.34 E-value=6.7e-12 Score=92.47 Aligned_cols=127 Identities=15% Similarity=0.182 Sum_probs=82.0
Q ss_pred CCCCCCChhhhHhhhhcccc-cccccCCccceEEEEEEECCeEEEEEEEeCCCCccCc----Cchh---hhccCCCEEEE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS----IFPA---QYSMDIHGYVL 72 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~~~---~~~~~~~~~il 72 (157)
||.||||||||+|++++.+. ...|..|+.+.....+.+++ ..+++.|+||-..-. .+.. ...+.+|++++
T Consensus 78 vG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~ 155 (376)
T 4a9a_A 78 VGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFI 155 (376)
T ss_dssp ECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEE
T ss_pred ECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCcccc
Confidence 69999999999999998765 35566666666667777877 557899999954322 2222 24578999999
Q ss_pred EEECCChhh-HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC--------CceecHHHHHHHHHHh
Q psy1873 73 VYSITSHKS-FEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM--------ERMISYDEGKRLAESW 143 (157)
Q Consensus 73 v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~--------~~~~~~~~~~~~~~~~ 143 (157)
|.|.+++.. ++.+...+.. .... +.+.|..++.||.|... ......++...+...+
T Consensus 156 vvD~~~p~~~~~~i~~EL~~----~~~~-----------l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~ 220 (376)
T 4a9a_A 156 ILDVNKPLHHKQIIEKELEG----VGIR-----------LNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEY 220 (376)
T ss_dssp EEETTSHHHHHHHHHHHHHH----TTEE-----------ETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHT
T ss_pred ccccCccHHHHHHHHHHHHH----hhHh-----------hccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHh
Confidence 999998743 2223222222 1111 22378889999999631 1234455555555554
Q ss_pred C
Q psy1873 144 K 144 (157)
Q Consensus 144 ~ 144 (157)
.
T Consensus 221 ~ 221 (376)
T 4a9a_A 221 R 221 (376)
T ss_dssp T
T ss_pred c
Confidence 4
No 204
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.28 E-value=2.7e-12 Score=86.83 Aligned_cols=96 Identities=11% Similarity=0.013 Sum_probs=58.8
Q ss_pred CCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCC-CCCCC
Q psy1873 50 TAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKK-DLHME 128 (157)
Q Consensus 50 ~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~-Dl~~~ 128 (157)
.+||.+++++|..|+.++|++|+|.|.+|++.++ .+..+.++........ .+..+|++|++||. |+..
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~---------~L~gapLLVlANKqqDlp~- 177 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAF---------GSSGRPLLVLSCISQGDVK- 177 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTS---------SCSCSCEEEEEEESSTTSC-
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchh---------hhCCCeEEEEeCCCcCccC-
Confidence 4589999999999999999999999999987654 5554433332222110 01339999999995 7743
Q ss_pred ceecHHHHHHHHH----HhCCcEEEeccccCCC
Q psy1873 129 RMISYDEGKRLAE----SWKAGFVEASAKQDDY 157 (157)
Q Consensus 129 ~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~ 157 (157)
.++..+..+... ...+.++.|||++|+|
T Consensus 178 -Ams~~EI~e~L~L~~l~R~W~Iq~csA~TGeG 209 (227)
T 3l82_B 178 -RMPCFYLAHELHLNLLNHPWLVQDTEAETLTG 209 (227)
T ss_dssp -BCCHHHHHHHTTGGGGCSCEEEEEEETTTCTT
T ss_pred -CCCHHHHHHHcCCcCCCCCEEEEEeECCCCcC
Confidence 444444333221 1235789999999987
No 205
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.25 E-value=7.5e-12 Score=91.29 Aligned_cols=91 Identities=11% Similarity=0.049 Sum_probs=52.9
Q ss_pred EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEe
Q psy1873 42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN 121 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~n 121 (157)
.+.+.++||+|...-. ......+|.+++++|....+..+.+..... . .|.+++.|
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~---------~-------------~~~ivvlN 201 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIF---------E-------------LADMIAVN 201 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHH---------H-------------HCSEEEEE
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHHh---------c-------------cccEEEEE
Confidence 3567899999965322 234578899999999865433222211110 1 45667779
Q ss_pred CCCCCCCceecHHHHHHHHHHh----------CCcEEEeccccCCC
Q psy1873 122 KKDLHMERMISYDEGKRLAESW----------KAGFVEASAKQDDY 157 (157)
Q Consensus 122 K~Dl~~~~~~~~~~~~~~~~~~----------~~~~~e~Sa~~~~~ 157 (157)
|+|+...........+.+.... ..+++.+||++++|
T Consensus 202 K~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~g 247 (337)
T 2qm8_A 202 KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKG 247 (337)
T ss_dssp CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBS
T ss_pred chhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCC
Confidence 9997543333333334443322 35789999999976
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.22 E-value=1.6e-11 Score=97.36 Aligned_cols=97 Identities=21% Similarity=0.074 Sum_probs=55.8
Q ss_pred EEEEEeCCCCccC-------------cCchhhhc-cCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCC
Q psy1873 44 DLKLVDTAGQDEY-------------SIFPAQYS-MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTS 109 (157)
Q Consensus 44 ~~~i~D~~g~~~~-------------~~~~~~~~-~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 109 (157)
.+.++||||-... ..+...++ ..+|++++|.|.+....-+....++..+ ....
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L----~~~g--------- 217 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV----DPQG--------- 217 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHH----CTTC---------
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHH----HhcC---------
Confidence 4678999996541 11223333 5789999999998643322221222222 2222
Q ss_pred CCCCCcEEEEEeCCCCCCCceecHHHHHH--HHHHhC-CcEEEeccccCCC
Q psy1873 110 CVSSVPIVLVGNKKDLHMERMISYDEGKR--LAESWK-AGFVEASAKQDDY 157 (157)
Q Consensus 110 ~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~--~~~~~~-~~~~e~Sa~~~~~ 157 (157)
.|+++|.||+|+.+........... +...++ .+++.+||++|+|
T Consensus 218 ----~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~G 264 (772)
T 3zvr_A 218 ----QRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDG 264 (772)
T ss_dssp ----SSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSS
T ss_pred ----CCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEeccccccc
Confidence 8999999999987544332221110 000123 3677899999876
No 207
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.21 E-value=8.3e-12 Score=92.42 Aligned_cols=81 Identities=16% Similarity=0.080 Sum_probs=44.5
Q ss_pred CCCCCCChhhhHhhhhcccccccccC-CccceEEEEEEECCe---------------EEEEEEEeCCCCccCcC------
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDP-TIENTFVKTTRMNNQ---------------DYDLKLVDTAGQDEYSI------ 58 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~~------ 58 (157)
||.+|||||||+|++++..+.....| ++.......+.+++. ...+.+||++|..+...
T Consensus 28 VG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg 107 (396)
T 2ohf_A 28 VGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLG 107 (396)
T ss_dssp ECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----------C
T ss_pred ECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccchhhHHH
Confidence 69999999999999998766332222 221212334444432 23589999999876543
Q ss_pred -chhhhccCCCEEEEEEECCChhh
Q psy1873 59 -FPAQYSMDIHGYVLVYSITSHKS 81 (157)
Q Consensus 59 -~~~~~~~~~~~~ilv~d~~~~~s 81 (157)
.+..+++.+|++++|+|.++.++
T Consensus 108 ~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 108 NAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp CHHHHHHHTSSSEEEEEEC-----
T ss_pred HHHHHHHHhcCeEEEEEecCCCcc
Confidence 34567889999999999986544
No 208
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.12 E-value=2.8e-11 Score=85.62 Aligned_cols=93 Identities=11% Similarity=-0.014 Sum_probs=62.4
Q ss_pred CCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHH---HHHHHhccccCCCCCCCCCCCCCCcEEEEEeC-CCC
Q psy1873 50 TAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYD---KLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK-KDL 125 (157)
Q Consensus 50 ~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK-~Dl 125 (157)
.+||.+.+.+|..|+.++|++|+|.|.+|++.++ .+..+. .++..... +.++|++|.+|| .|+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~------------l~~apLLVfANKkQDl 260 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFG------------SSGRPLLVLSCISQGD 260 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHH------------CTTCCEEEEEEESSTT
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhh------------cCCCeEEEEeCCcccc
Confidence 4789999999999999999999999999998765 444333 33322210 122999999996 688
Q ss_pred CCCceecHHHHHHHHH----HhCCcEEEeccccCCC
Q psy1873 126 HMERMISYDEGKRLAE----SWKAGFVEASAKQDDY 157 (157)
Q Consensus 126 ~~~~~~~~~~~~~~~~----~~~~~~~e~Sa~~~~~ 157 (157)
.. .++..+..+... .....++.|||++|+|
T Consensus 261 p~--Ams~~EI~e~L~L~~l~r~W~Iq~csA~tGeG 294 (312)
T 3l2o_B 261 VK--RMPCFYLAHELHLNLLNHPWLVQDTEAETLTG 294 (312)
T ss_dssp SC--BCCHHHHHHHTTGGGGCSCEEEEEEETTTCTT
T ss_pred cC--CCCHHHHHHHcCCccCCCcEEEEecccCCCcC
Confidence 43 344444332211 1235689999999987
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.09 E-value=2.3e-09 Score=79.52 Aligned_cols=78 Identities=14% Similarity=0.074 Sum_probs=51.2
Q ss_pred CCCCCCChhhhHhhhhcccc-cc-cccCCccceEEEEEEECCe---------------EEEEEEEeCCCCccCc------
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF-VD-SYDPTIENTFVKTTRMNNQ---------------DYDLKLVDTAGQDEYS------ 57 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~-~~-~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~------ 57 (157)
||++|||||||+|++++... .. .+..++.......+.+++. ...+.+||++|.....
T Consensus 26 VG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L 105 (392)
T 1ni3_A 26 VGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGL 105 (392)
T ss_dssp EECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSS
T ss_pred ECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHHH
Confidence 69999999999999998765 33 2322222222344555541 1357899999954321
Q ss_pred -CchhhhccCCCEEEEEEECCC
Q psy1873 58 -IFPAQYSMDIHGYVLVYSITS 78 (157)
Q Consensus 58 -~~~~~~~~~~~~~ilv~d~~~ 78 (157)
......++.+|+++.++|..+
T Consensus 106 ~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 106 GNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CHHHHHHHTTCSEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 123445688999999999864
No 210
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.06 E-value=7.8e-10 Score=85.40 Aligned_cols=123 Identities=14% Similarity=0.123 Sum_probs=79.7
Q ss_pred CCCCCCChhhhHhhhhccc------------------ccccc--cCCccceE---EEEEEECCeEEEEEEEeCCCCccCc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ------------------FVDSY--DPTIENTF---VKTTRMNNQDYDLKLVDTAGQDEYS 57 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~------------------~~~~~--~~t~~~~~---~~~~~~~~~~~~~~i~D~~g~~~~~ 57 (157)
||..++|||||..+|+... +.+.. ....+.+. ...+.+++ +.+.|.||||+.+|.
T Consensus 37 iaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGHvDF~ 114 (548)
T 3vqt_A 37 ISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDTPGHQDFS 114 (548)
T ss_dssp ECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECCCCGGGCS
T ss_pred EeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeCCCcHHHH
Confidence 5889999999999996210 11100 00001111 23334444 678999999999999
Q ss_pred CchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHH
Q psy1873 58 IFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGK 137 (157)
Q Consensus 58 ~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~ 137 (157)
.-....++-+|++|+|+|..+.-.-+...-| ....... +|.+++.||.|....+. .....
T Consensus 115 ~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~~-----------------lp~i~fINK~Dr~~ad~--~~~~~ 174 (548)
T 3vqt_A 115 EDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMRA-----------------TPVMTFVNKMDREALHP--LDVMA 174 (548)
T ss_dssp HHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHTT-----------------CCEEEEEECTTSCCCCH--HHHHH
T ss_pred HHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHhC-----------------CceEEEEecccchhcch--hHhhh
Confidence 9999999999999999999887665554443 3333333 99999999999754322 23344
Q ss_pred HHHHHhCC
Q psy1873 138 RLAESWKA 145 (157)
Q Consensus 138 ~~~~~~~~ 145 (157)
.+...++.
T Consensus 175 ~i~~~l~~ 182 (548)
T 3vqt_A 175 DIEQHLQI 182 (548)
T ss_dssp HHHHHHTS
T ss_pred hhhhhcCC
Confidence 44455554
No 211
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.88 E-value=1.4e-09 Score=80.27 Aligned_cols=85 Identities=19% Similarity=0.145 Sum_probs=61.8
Q ss_pred CCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCcee
Q psy1873 52 GQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMI 131 (157)
Q Consensus 52 g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~ 131 (157)
.+++|..++..+.+.++++++|+|++++. ..|...+.+... . .|+++|+||+|+.+.. .
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~--~-------------~p~ilV~NK~DL~~~~-~ 113 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG--N-------------NKVLLVGNKADLIPKS-V 113 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS--S-------------SCEEEEEECGGGSCTT-S
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC--C-------------CcEEEEEEChhcCCcc-c
Confidence 46788888999999999999999999864 334444444332 2 8999999999996532 2
Q ss_pred cHHHH----HHHHHHhCC---cEEEeccccCCC
Q psy1873 132 SYDEG----KRLAESWKA---GFVEASAKQDDY 157 (157)
Q Consensus 132 ~~~~~----~~~~~~~~~---~~~e~Sa~~~~~ 157 (157)
..++. ..+++..|+ +++++||++|+|
T Consensus 114 ~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~g 146 (368)
T 3h2y_A 114 KHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQG 146 (368)
T ss_dssp CHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTT
T ss_pred CHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcC
Confidence 23333 334667787 799999999986
No 212
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.79 E-value=5e-08 Score=77.57 Aligned_cols=109 Identities=19% Similarity=0.184 Sum_probs=71.7
Q ss_pred CCCCCCChhhhHhhhhcc--------ccccc--ccCC------ccceE---EEEEEECC-----eEEEEEEEeCCCCccC
Q psy1873 1 MGYRSVGKSSLSIQFVDG--------QFVDS--YDPT------IENTF---VKTTRMNN-----QDYDLKLVDTAGQDEY 56 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~--------~~~~~--~~~t------~~~~~---~~~~~~~~-----~~~~~~i~D~~g~~~~ 56 (157)
||...+|||||..+|+.. ..... +.-+ .+.+. ...+.+.+ ..+.+.+.||||+-+|
T Consensus 19 iaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF 98 (709)
T 4fn5_A 19 CAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDF 98 (709)
T ss_dssp ECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCCSCTTC
T ss_pred EcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCccc
Confidence 578899999999998632 11100 0000 01111 22223322 3578999999999999
Q ss_pred cCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCC
Q psy1873 57 SIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHM 127 (157)
Q Consensus 57 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~ 127 (157)
..-....++-+|++|+|+|..+.-.-+... .|.+..... +|.+++.||.|...
T Consensus 99 ~~Ev~~aLr~~DgavlvVDaveGV~~qT~~-v~~~a~~~~-----------------lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 99 TIEVERSLRVLDGAVVVFCGTSGVEPQSET-VWRQANKYG-----------------VPRIVYVNKMDRQG 151 (709)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHHHH-HHHHHHHHT-----------------CCEEEEEECSSSTT
T ss_pred HHHHHHHHHHhCeEEEEEECCCCCchhHHH-HHHHHHHcC-----------------CCeEEEEccccccC
Confidence 998888999999999999998765544333 333443333 99999999999754
No 213
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.75 E-value=1.9e-09 Score=84.67 Aligned_cols=108 Identities=18% Similarity=0.231 Sum_probs=72.2
Q ss_pred CCCCCCChhhhHhhhhccc--------cccc--ccCC------ccceE-EEEEEECCeEEEEEEEeCCCCccCcCchhhh
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ--------FVDS--YDPT------IENTF-VKTTRMNNQDYDLKLVDTAGQDEYSIFPAQY 63 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~--------~~~~--~~~t------~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 63 (157)
||..++|||||..+|+... .... +.-. .+.+. ...+.+..+.+.+.+.||||+.+|..-....
T Consensus 8 iaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~ra 87 (638)
T 3j25_A 8 LAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRS 87 (638)
T ss_dssp ECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 5889999999999986311 1000 0000 01011 1222233345678999999999999999999
Q ss_pred ccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCC
Q psy1873 64 SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLH 126 (157)
Q Consensus 64 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~ 126 (157)
++-+|++|+|+|..+.-.-+.. ..|....... +|.+++.||.|..
T Consensus 88 L~~~DgavlVVDa~~GV~~qT~-~v~~~a~~~~-----------------lp~i~~INKmDr~ 132 (638)
T 3j25_A 88 LSVLDGAILLISAKDGVQAQTR-ILFHALRKMG-----------------IPTIFFINKIDQN 132 (638)
T ss_dssp HTTCSEEECCEESSCTTCSHHH-HHHHHHHHHT-----------------CSCEECCEECCSS
T ss_pred HHHhCEEEEEEeCCCCCcHHHH-HHHHHHHHcC-----------------CCeEEEEeccccc
Confidence 9999999999999876544433 3344444433 8899999999975
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.72 E-value=3.7e-09 Score=77.97 Aligned_cols=86 Identities=22% Similarity=0.210 Sum_probs=60.1
Q ss_pred CCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCce
Q psy1873 51 AGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERM 130 (157)
Q Consensus 51 ~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~ 130 (157)
..+++|..+...++..++++++|+|++++.+ .|...+..... . .|+++|+||+|+.+. .
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~--~-------------~piilV~NK~DLl~~-~ 114 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA--D-------------NPILLVGNKADLLPR-S 114 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT--T-------------SCEEEEEECGGGSCT-T
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC--C-------------CCEEEEEEChhcCCC-c
Confidence 3578899999999899999999999999874 23333333322 1 899999999998653 2
Q ss_pred ecHHHHH----HHHHHhCC---cEEEeccccCCC
Q psy1873 131 ISYDEGK----RLAESWKA---GFVEASAKQDDY 157 (157)
Q Consensus 131 ~~~~~~~----~~~~~~~~---~~~e~Sa~~~~~ 157 (157)
...+... .+++..|+ .++.+||++|.|
T Consensus 115 ~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~g 148 (369)
T 3ec1_A 115 VKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIG 148 (369)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBT
T ss_pred cCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCC
Confidence 2223333 34566676 689999999976
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.61 E-value=1.1e-08 Score=75.53 Aligned_cols=130 Identities=15% Similarity=0.082 Sum_probs=70.2
Q ss_pred CCCCCCChhhhHhhhhcc------ccc-ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc--------hhhhc-
Q psy1873 1 MGYRSVGKSSLSIQFVDG------QFV-DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF--------PAQYS- 64 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~------~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~- 64 (157)
+|.+|+|||||+|++++. ... ..+..|+.. .....++.. +.++||||-.....+ ...++
T Consensus 168 vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~~~~ 242 (369)
T 3ec1_A 168 VGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLKIITP 242 (369)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHHHHSC
T ss_pred EcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHHHHhc
Confidence 599999999999999875 221 222222221 222233332 689999996433211 11222
Q ss_pred -cCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHHh
Q psy1873 65 -MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESW 143 (157)
Q Consensus 65 -~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~ 143 (157)
+..+.++++.+.....-+..+.+ +...... ..|++++.||.|....... ......+.+..
T Consensus 243 ~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~-------------~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~ 303 (369)
T 3ec1_A 243 KREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGG-------------RRSFVCYMANELTVHRTKL-EKADSLYANQL 303 (369)
T ss_dssp SSCCCCEEEEECTTEEEEETTTEE-----EEEEESS-------------SEEEEEEECTTSCEEEEEG-GGHHHHHHHHB
T ss_pred ccccCceEEEEcCCceEEECCEEE-----EEEccCC-------------CceEEEEecCCcccccccH-HHHHHHHHHhc
Confidence 55677888877632211111110 1111111 2899999999998654433 23345566666
Q ss_pred CCcEEEecccc
Q psy1873 144 KAGFVEASAKQ 154 (157)
Q Consensus 144 ~~~~~e~Sa~~ 154 (157)
|......++.+
T Consensus 304 g~~l~p~~~~~ 314 (369)
T 3ec1_A 304 GELLSPPSKRY 314 (369)
T ss_dssp TTTBCSSCGGG
T ss_pred CCccCCCCchh
Confidence 76555555443
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.50 E-value=8.7e-09 Score=75.97 Aligned_cols=128 Identities=11% Similarity=0.051 Sum_probs=65.5
Q ss_pred CCCCCCChhhhHhhhhccccc--------ccccCCccceEEEEEEECCeEEEEEEEeCCCCccCcCc----hh----hh-
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV--------DSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF----PA----QY- 63 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~--------~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----~~----~~- 63 (157)
+|.+|+|||||+|++++.... .....|+.. .....++.. +.++||||-.....+ .. .+
T Consensus 166 vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~~~ 240 (368)
T 3h2y_A 166 VGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLD--LIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLKLIT 240 (368)
T ss_dssp EEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----C--EEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHHHHS
T ss_pred ecCCCCChhHHHHHHHhhhccccccceecCCCCCeecc--eEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHHHhc
Confidence 599999999999999875311 111111111 222233332 689999996433311 11 11
Q ss_pred -ccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceecHHHHHHHHHH
Q psy1873 64 -SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAES 142 (157)
Q Consensus 64 -~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~ 142 (157)
.+..+.++++++.....-+..+.. +...... ..|++++.||.|....... ......+.+.
T Consensus 241 ~~~~i~~~~~~l~~~~~~~~g~l~~-----~d~l~~~-------------~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~ 301 (368)
T 3h2y_A 241 PTKEIKPMVFQLNEEQTLFFSGLAR-----FDYVSGG-------------RRAFTCHFSNRLTIHRTKL-EKADELYKNH 301 (368)
T ss_dssp CSSCCCCEEEEECTTEEEEETTTEE-----EEEEESS-------------SEEEEEEECTTSCEEEEEH-HHHHHHHHHH
T ss_pred cccccCceEEEEcCCCEEEEcceEE-----EEEecCC-------------CceEEEEecCccccccccH-HHHHHHHHHH
Confidence 245566777766532211111100 1111111 2899999999998654333 2334455566
Q ss_pred hCCcEEEecc
Q psy1873 143 WKAGFVEASA 152 (157)
Q Consensus 143 ~~~~~~e~Sa 152 (157)
.|...+..++
T Consensus 302 ~g~~l~p~~~ 311 (368)
T 3h2y_A 302 AGDLLSPPTP 311 (368)
T ss_dssp BTTTBCSSCH
T ss_pred hCCccCCCch
Confidence 6654444343
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.49 E-value=1.6e-07 Score=71.80 Aligned_cols=81 Identities=15% Similarity=0.188 Sum_probs=45.7
Q ss_pred EEEEEEEeCCCCccCcC-chhh---h--ccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc
Q psy1873 42 DYDLKLVDTAGQDEYSI-FPAQ---Y--SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP 115 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~-~~~~---~--~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p 115 (157)
.+.+.|+||+|...... +... . ...+|.+++|.|.+..... ......+... .|
T Consensus 183 ~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~~------------------~~ 241 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKDK------------------VD 241 (504)
T ss_dssp TCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHHH------------------HC
T ss_pred CCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHhh------------------cC
Confidence 35789999999764321 1111 1 2268999999998875431 1112222211 56
Q ss_pred E-EEEEeCCCCCCCceecHHHHHHHHHHhCCcE
Q psy1873 116 I-VLVGNKKDLHMERMISYDEGKRLAESWKAGF 147 (157)
Q Consensus 116 ~-~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 147 (157)
+ .||.||.|...... .+.......++|+
T Consensus 242 i~gvVlNK~D~~~~~g----~~l~~~~~~g~PI 270 (504)
T 2j37_W 242 VASVIVTKLDGHAKGG----GALSAVAATKSPI 270 (504)
T ss_dssp CCCEEEECTTSCCCCT----HHHHHHHHHCCCE
T ss_pred ceEEEEeCCccccchH----HHHHHHHHhCCCe
Confidence 4 89999999753211 1223444566654
No 218
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.48 E-value=1.3e-07 Score=67.29 Aligned_cols=87 Identities=11% Similarity=-0.047 Sum_probs=56.7
Q ss_pred EEeCCCCc-cCcCchhhhccCCCEEEEEEECCChhhHH--HHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCC
Q psy1873 47 LVDTAGQD-EYSIFPAQYSMDIHGYVLVYSITSHKSFE--VVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKK 123 (157)
Q Consensus 47 i~D~~g~~-~~~~~~~~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~ 123 (157)
|-..||+. .........++.+|+++.|+|+.++.+.. .+.+++ . . .|.++|+||+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~-~-------------kp~ilVlNK~ 60 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------K-N-------------KPRIMLLNKA 60 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------S-S-------------SCEEEEEECG
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------C-C-------------CCEEEEEECc
Confidence 34567765 33344566788999999999999988764 344442 1 2 8999999999
Q ss_pred CCCCCceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 124 DLHMERMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 124 Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
|+.+... .+....+.+..+++++.+||+++.|
T Consensus 61 DL~~~~~--~~~~~~~~~~~g~~~i~iSA~~~~g 92 (282)
T 1puj_A 61 DKADAAV--TQQWKEHFENQGIRSLSINSVNGQG 92 (282)
T ss_dssp GGSCHHH--HHHHHHHHHTTTCCEEECCTTTCTT
T ss_pred ccCCHHH--HHHHHHHHHhcCCcEEEEECCCccc
Confidence 9965211 1222334445678999999999875
No 219
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.46 E-value=2.4e-07 Score=69.30 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=17.7
Q ss_pred CCCCCCChhhhHhhhhcccc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF 20 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~ 20 (157)
||++|+|||||++.+.+..+
T Consensus 48 vG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 48 VGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp ECSTTSSSHHHHHHHHTSCC
T ss_pred ECCCCCCHHHHHHHHhCccc
Confidence 69999999999999987654
No 220
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.19 E-value=7.3e-07 Score=63.01 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=16.8
Q ss_pred CCCCCCChhhhHhhhhccc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ 19 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~ 19 (157)
||++|+|||||++.+.+..
T Consensus 8 vG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 8 VGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EESSSSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999998643
No 221
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.19 E-value=3.2e-06 Score=60.78 Aligned_cols=86 Identities=12% Similarity=0.026 Sum_probs=56.0
Q ss_pred cCcCchhhhccCCCEEEEEEECCChhh-HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCcee--
Q psy1873 55 EYSIFPAQYSMDIHGYVLVYSITSHKS-FEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMI-- 131 (157)
Q Consensus 55 ~~~~~~~~~~~~~~~~ilv~d~~~~~s-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~-- 131 (157)
+...+......++|.+++|+|+.+|.. ...+.+++... .... +|.+||.||+|+.+....
T Consensus 75 R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~----~~~~-------------~~~vivlnK~DL~~~~~~~~ 137 (307)
T 1t9h_A 75 RTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLV----EAND-------------IQPIICITKMDLIEDQDTED 137 (307)
T ss_dssp CSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHH----HTTT-------------CEEEEEEECGGGCCCHHHHH
T ss_pred hhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH----HHCC-------------CCEEEEEECCccCchhhhHH
Confidence 334455557899999999999987654 34444443222 2112 889999999999764321
Q ss_pred cHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 132 SYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 132 ~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
..+...++-...|.+.+.+||++|.|
T Consensus 138 ~~~~~~~~y~~~g~~v~~~sa~~~~g 163 (307)
T 1t9h_A 138 TIQAYAEDYRNIGYDVYLTSSKDQDS 163 (307)
T ss_dssp HHHHHHHHHHHHTCCEEECCHHHHTT
T ss_pred HHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 12333444455688999999988754
No 222
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.10 E-value=1.4e-05 Score=59.71 Aligned_cols=18 Identities=28% Similarity=0.182 Sum_probs=16.4
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||+|.+.+.
T Consensus 75 vG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 75 TGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EECTTSSHHHHHHHHHTC
T ss_pred ECCCCCcHHHHHHHHhCC
Confidence 699999999999999874
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.02 E-value=1e-06 Score=62.04 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=29.2
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCcc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDE 55 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~ 55 (157)
+|.+|||||||+|++.+...... .++.+.+. ...+..+. .+.+|||||...
T Consensus 105 vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 105 VGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp EESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred eCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 59999999999999997665211 12222111 11122222 468999999654
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.00 E-value=1.7e-05 Score=59.60 Aligned_cols=86 Identities=16% Similarity=-0.001 Sum_probs=50.9
Q ss_pred EEEEEEeCCCCccCcCch-h-----hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcE
Q psy1873 43 YDLKLVDTAGQDEYSIFP-A-----QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPI 116 (157)
Q Consensus 43 ~~~~i~D~~g~~~~~~~~-~-----~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~ 116 (157)
+.+.|+||+|......-. . .....++.+++|.|.+....-.. ....+.... .+.
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~~-----------------~i~ 242 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEAT-----------------PIG 242 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHSC-----------------TTE
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhhC-----------------CCe
Confidence 678899999965433211 1 11235688999999876433221 122222211 446
Q ss_pred EEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEecc
Q psy1873 117 VLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152 (157)
Q Consensus 117 ~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 152 (157)
.||.||.|.... ...+..+....++|+..++.
T Consensus 243 gVIlTKlD~~~~----gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 243 SIIVTKLDGSAK----GGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp EEEEECCSSCSS----HHHHHHHHHTTCCCEEEEEC
T ss_pred EEEEECCCCccc----ccHHHHHHHHHCCCEEEEEc
Confidence 799999997432 22345556677888877765
No 225
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.98 E-value=2.8e-06 Score=60.41 Aligned_cols=49 Identities=24% Similarity=0.395 Sum_probs=28.4
Q ss_pred CCCCCCChhhhHhhhhccccc-ccccC-CccceEEEEEEECCeEEEEEEEeCCCCc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFV-DSYDP-TIENTFVKTTRMNNQDYDLKLVDTAGQD 54 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~-~~~~~-t~~~~~~~~~~~~~~~~~~~i~D~~g~~ 54 (157)
+|.+|||||||+|++.+.... ....+ ++.. ...+..+. .+.+|||||-.
T Consensus 126 vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 126 IGIPNVGKSTLINRLAKKNIAKTGDRPGITTS--QQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp EESTTSSHHHHHHHHHTSCCC--------------CCEEETT---TEEEEECCCCC
T ss_pred EecCCCchHHHHHHHhcCceeecCCCCCeeee--eEEEEeCC---CEEEEECcCcC
Confidence 599999999999999976532 11111 1111 11122222 46899999964
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.95 E-value=3.6e-06 Score=59.17 Aligned_cols=83 Identities=12% Similarity=-0.000 Sum_probs=52.6
Q ss_pred CCCCccCc-CchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCC
Q psy1873 50 TAGQDEYS-IFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHME 128 (157)
Q Consensus 50 ~~g~~~~~-~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~ 128 (157)
.||+.... ......+..+|+++.|+|+.++.+..... +. ++ . .|.++|.||+|+.+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-ll------~-------------k~~iivlNK~DL~~~ 61 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-FS------R-------------KETIILLNKVDIADE 61 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-CT------T-------------SEEEEEEECGGGSCH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-hc------C-------------CCcEEEEECccCCCH
Confidence 46665433 34566778999999999999887654311 01 11 2 899999999999653
Q ss_pred ceecHHHHHHHHHHhCCcEEEeccccCCC
Q psy1873 129 RMISYDEGKRLAESWKAGFVEASAKQDDY 157 (157)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 157 (157)
.. .+....+.+..|+++ .+||+++.|
T Consensus 62 ~~--~~~~~~~~~~~g~~v-~iSa~~~~g 87 (262)
T 3cnl_A 62 KT--TKKWVEFFKKQGKRV-ITTHKGEPR 87 (262)
T ss_dssp HH--HHHHHHHHHHTTCCE-EECCTTSCH
T ss_pred HH--HHHHHHHHHHcCCeE-EEECCCCcC
Confidence 21 122233445568888 999999864
No 227
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.82 E-value=7e-06 Score=63.85 Aligned_cols=55 Identities=22% Similarity=0.219 Sum_probs=32.3
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCc-cc---eEEEEEEE-CCeEEEEEEEeCCCCcc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTI-EN---TFVKTTRM-NNQDYDLKLVDTAGQDE 55 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~-~~---~~~~~~~~-~~~~~~~~i~D~~g~~~ 55 (157)
+|.+|||||||+|++++....-....|. +. .+.+...+ ......+.++||+|...
T Consensus 44 vG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 44 VGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp EEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred ECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 6999999999999999876321222222 11 11111111 12234578999999654
No 228
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.81 E-value=5.9e-05 Score=55.26 Aligned_cols=77 Identities=18% Similarity=0.171 Sum_probs=47.8
Q ss_pred hccCCCEEEEEEECCChh-hHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEeCCCCCCCceec-HHHHHHHH
Q psy1873 63 YSMDIHGYVLVYSITSHK-SFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMIS-YDEGKRLA 140 (157)
Q Consensus 63 ~~~~~~~~ilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~nK~Dl~~~~~~~-~~~~~~~~ 140 (157)
...++|.+++|.+.. |. +...+.+++....... +|.+||.||+|+.+..... .++.....
T Consensus 127 i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~~-----------------~~~iivlNK~DL~~~~~~~~~~~~~~~y 188 (358)
T 2rcn_A 127 IAANIDQIVIVSAIL-PELSLNIIDRYLVGCETLQ-----------------VEPLIVLNKIDLLDDEGMDFVNEQMDIY 188 (358)
T ss_dssp EEECCCEEEEEEEST-TTCCHHHHHHHHHHHHHHT-----------------CEEEEEEECGGGCCHHHHHHHHHHHHHH
T ss_pred HHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhcC-----------------CCEEEEEECccCCCchhHHHHHHHHHHH
Confidence 367889999887654 54 3444444443322222 7889999999996542210 11122223
Q ss_pred HHhCCcEEEeccccCCC
Q psy1873 141 ESWKAGFVEASAKQDDY 157 (157)
Q Consensus 141 ~~~~~~~~e~Sa~~~~~ 157 (157)
...|++.+.+||+++.|
T Consensus 189 ~~~G~~v~~~Sa~~~~g 205 (358)
T 2rcn_A 189 RNIGYRVLMVSSHTQDG 205 (358)
T ss_dssp HTTTCCEEECBTTTTBT
T ss_pred HhCCCcEEEEecCCCcC
Confidence 45688999999999875
No 229
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.81 E-value=3e-05 Score=58.31 Aligned_cols=84 Identities=17% Similarity=0.074 Sum_probs=47.6
Q ss_pred EEEEEEEeCCCCccCcC-chh-----hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCC-
Q psy1873 42 DYDLKLVDTAGQDEYSI-FPA-----QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSV- 114 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~-~~~-----~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~- 114 (157)
.+.+.|.||+|...... +.. .....+|.+++|.|.+.... .......+ .. . .
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~---~~--~-------------~~ 238 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF---KE--A-------------VG 238 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH---HT--T-------------SC
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH---hh--c-------------cc
Confidence 35678999999765321 111 11225789999999765432 21111111 11 1 5
Q ss_pred c-EEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEe
Q psy1873 115 P-IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEA 150 (157)
Q Consensus 115 p-~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 150 (157)
| ..+|.||.|..... ..+..+....+.|+..+
T Consensus 239 ~i~gvVlnK~D~~~~~----g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 239 EIGSIIVTKLDGSAKG----GGALSAVAETKAPIKFI 271 (432)
T ss_dssp SCEEEEEECSSSCSTT----HHHHHHHHHSSCCEEEE
T ss_pred CCeEEEEeCCCCccch----HHHHHHHHHHCCCEEEe
Confidence 5 78999999974321 22344666677776554
No 230
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.68 E-value=0.00012 Score=55.06 Aligned_cols=87 Identities=14% Similarity=0.034 Sum_probs=51.5
Q ss_pred EEEEEEEeCCCCcc--CcC-chhh-----hccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCC
Q psy1873 42 DYDLKLVDTAGQDE--YSI-FPAQ-----YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSS 113 (157)
Q Consensus 42 ~~~~~i~D~~g~~~--~~~-~~~~-----~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 113 (157)
.+.+.|.|++|... ... +... ..-..+.+++|.|......... ....+.+..
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~~----------------- 238 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQAS----------------- 238 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHHC-----------------
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhccc-----------------
Confidence 45678999999654 221 1111 1124588999999876433222 222232222
Q ss_pred CcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEecc
Q psy1873 114 VPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152 (157)
Q Consensus 114 ~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 152 (157)
.+..||.||.|... ....+.......++|+..++.
T Consensus 239 ~~~gVIlTKlD~~a----~~G~als~~~~~g~Pi~fig~ 273 (433)
T 3kl4_A 239 PIGSVIITKMDGTA----KGGGALSAVVATGATIKFIGT 273 (433)
T ss_dssp SSEEEEEECGGGCS----CHHHHHHHHHHHTCEEEEEEC
T ss_pred CCcEEEEecccccc----cchHHHHHHHHHCCCEEEEEC
Confidence 55789999999743 123455666677998877765
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.56 E-value=0.00019 Score=51.27 Aligned_cols=85 Identities=14% Similarity=0.028 Sum_probs=51.1
Q ss_pred EEEEEEEeCCCCcc--CcC-chh-----hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCC
Q psy1873 42 DYDLKLVDTAGQDE--YSI-FPA-----QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSS 113 (157)
Q Consensus 42 ~~~~~i~D~~g~~~--~~~-~~~-----~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 113 (157)
.+.+.+.||+|... ... +.. .....+|.+++|.|.... ++.......+.. .
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~----~-------------- 238 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ----A-------------- 238 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH----T--------------
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh----h--------------
Confidence 45688999999876 321 111 123468899999987643 222222222221 1
Q ss_pred Cc-EEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873 114 VP-IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS 151 (157)
Q Consensus 114 ~p-~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 151 (157)
.| ..+|.||.|.... ...+..++...++|+..++
T Consensus 239 ~~i~gvVlnk~D~~~~----~g~~~~~~~~~~~pi~~i~ 273 (297)
T 1j8m_F 239 SKIGTIIITKMDGTAK----GGGALSAVAATGATIKFIG 273 (297)
T ss_dssp CTTEEEEEECGGGCTT----HHHHHHHHHTTTCCEEEEE
T ss_pred CCCCEEEEeCCCCCcc----hHHHHHHHHHHCcCEEEEe
Confidence 45 7789999996432 2345567777888877665
No 232
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.46 E-value=0.00014 Score=56.95 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=17.1
Q ss_pred CCCCCCChhhhHhhhhccc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ 19 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~ 19 (157)
||++|||||||++.+.+-.
T Consensus 51 vG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 51 IGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCTTSCHHHHHHHHHSCC
T ss_pred ECCCCChHHHHHHHHhCCC
Confidence 7999999999999998753
No 233
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.46 E-value=2.2e-06 Score=65.07 Aligned_cols=92 Identities=14% Similarity=0.081 Sum_probs=51.4
Q ss_pred CCCCCCChhhhHhhhhcccccccccCCccceE-EEEEEECCeEEEEEEEeCCCCcc--CcCch--------hhhccCCCE
Q psy1873 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDE--YSIFP--------AQYSMDIHG 69 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~--~~~~~--------~~~~~~~~~ 69 (157)
+|.+|+||||+.++|...-... ..++..... .......+......+||..|++. ....+ ..++....+
T Consensus 45 vGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G 123 (469)
T 1bif_A 45 VGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGG 123 (469)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5999999999999997542211 111111000 00000111123346799988733 22222 456666778
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHH
Q psy1873 70 YVLVYSITSHKSFEVVQILYDKLLD 94 (157)
Q Consensus 70 ~ilv~d~~~~~s~~~~~~~~~~i~~ 94 (157)
.++|+|.++. +.+....|+..+..
T Consensus 124 ~~vV~D~tn~-~~~~R~~~~~~~~~ 147 (469)
T 1bif_A 124 HVAVFDATNT-TRERRAMIFNFGEQ 147 (469)
T ss_dssp SEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred CEEEEeCCCC-CHHHHHHHHHHHHh
Confidence 8999999987 45555556554443
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.39 E-value=0.00071 Score=49.03 Aligned_cols=85 Identities=13% Similarity=0.007 Sum_probs=46.9
Q ss_pred EEEEEEeCCCCccCcCchhhh------ccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcE
Q psy1873 43 YDLKLVDTAGQDEYSIFPAQY------SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPI 116 (157)
Q Consensus 43 ~~~~i~D~~g~~~~~~~~~~~------~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~ 116 (157)
+.+.+.|++|........... .-..|-.+++.|..... ++......+.... -.-
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~-----------------~it 271 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV-----------------KID 271 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS-----------------CCC
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc-----------------CCC
Confidence 345679999975443321111 11357788888866543 3333333332222 234
Q ss_pred EEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873 117 VLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS 151 (157)
Q Consensus 117 ~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 151 (157)
.|+.||.|... . ...+.......++|+..++
T Consensus 272 ~iilTKlD~~a--~--~G~~l~~~~~~~~pi~~i~ 302 (328)
T 3e70_C 272 GIILTKLDADA--R--GGAALSISYVIDAPILFVG 302 (328)
T ss_dssp EEEEECGGGCS--C--CHHHHHHHHHHTCCEEEEE
T ss_pred EEEEeCcCCcc--c--hhHHHHHHHHHCCCEEEEe
Confidence 78889999522 1 1335566677788877665
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.93 E-value=0.00082 Score=50.67 Aligned_cols=18 Identities=28% Similarity=0.060 Sum_probs=16.3
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++++|||+|+|+|++.
T Consensus 73 ~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 73 AGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhhh
Confidence 699999999999999864
No 236
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.87 E-value=0.00029 Score=46.44 Aligned_cols=18 Identities=17% Similarity=0.457 Sum_probs=16.1
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||++.+.+.
T Consensus 11 ~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 11 LGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 599999999999999763
No 237
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.78 E-value=0.00037 Score=46.70 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=15.6
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|||||||++.+.+
T Consensus 10 vGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 10 SGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 69999999999999875
No 238
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.74 E-value=0.00042 Score=45.74 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=15.8
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+.
T Consensus 6 ~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 6 TGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999988753
No 239
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.67 E-value=0.00054 Score=44.78 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=14.1
Q ss_pred CCCCCCChhhhHhhhh
Q psy1873 1 MGYRSVGKSSLSIQFV 16 (157)
Q Consensus 1 vG~~~~GKssli~~~~ 16 (157)
+|++|||||||++.+.
T Consensus 15 ~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 15 IGSSGSGKSTFAKKHF 30 (171)
T ss_dssp ECCTTSCHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHc
Confidence 6999999999999654
No 240
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.65 E-value=0.00049 Score=45.53 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||++.+.+.
T Consensus 7 ~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 7 SGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp ESSSSSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 599999999999999753
No 241
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.62 E-value=0.00056 Score=45.66 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||++.+.+.
T Consensus 13 ~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 13 SAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHhh
Confidence 599999999999998764
No 242
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.62 E-value=0.00056 Score=46.05 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||++.+.+-
T Consensus 26 ~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 26 SGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 699999999999998754
No 243
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.57 E-value=0.00064 Score=46.42 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=16.1
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||++.+.+.
T Consensus 22 ~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 22 SAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 599999999999998764
No 244
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.54 E-value=0.00067 Score=46.15 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||++.+.+.
T Consensus 29 vGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 29 CGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 699999999999998763
No 245
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.50 E-value=0.00076 Score=45.32 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=16.1
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||+++|++.
T Consensus 25 ~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 25 IGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHhh
Confidence 599999999999999853
No 246
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.49 E-value=0.00064 Score=44.87 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||++.+.+.
T Consensus 15 ~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 15 SGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EECTTSCHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhc
Confidence 599999999999999764
No 247
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.45 E-value=0.00087 Score=49.11 Aligned_cols=19 Identities=42% Similarity=0.406 Sum_probs=16.9
Q ss_pred CCCCCCChhhhHhhhhccc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ 19 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~ 19 (157)
+|++|||||||+|.+.+..
T Consensus 221 vG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 221 AGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp ECCTTSSHHHHHHHHHCCS
T ss_pred ECCCCccHHHHHHHHhccc
Confidence 6999999999999998753
No 248
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.41 E-value=0.014 Score=43.86 Aligned_cols=84 Identities=17% Similarity=0.067 Sum_probs=46.9
Q ss_pred EEEEEEEeCCCCccCcC-chh-----hhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc
Q psy1873 42 DYDLKLVDTAGQDEYSI-FPA-----QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP 115 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~-~~~-----~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p 115 (157)
.+.+.|.||+|...... +.. .....++.+++|.|...... +......+... .+
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~~------------------l~ 241 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNEA------------------LP 241 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHHH------------------SC
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhcc------------------CC
Confidence 46788999999765432 111 12346788999999875432 22222222111 44
Q ss_pred -EEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEe
Q psy1873 116 -IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEA 150 (157)
Q Consensus 116 -~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 150 (157)
.-||.||.|.... . ..+..+....++|+..+
T Consensus 242 i~gvVlnK~D~~~~--~--g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 242 LTGVVLTKVDGDAR--G--GAALSIRHITGKPIKFL 273 (433)
T ss_dssp CCCEEEECTTSSSC--C--THHHHHHHHHCCCEEEE
T ss_pred CeEEEEecCCCCcc--H--HHHHHHHHHHCCCeEEE
Confidence 3479999996432 1 23445666667765443
No 249
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.40 E-value=0.00097 Score=45.97 Aligned_cols=17 Identities=29% Similarity=0.217 Sum_probs=15.6
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|||||||++.+.+
T Consensus 37 iG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 37 MGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp ECSTTSSHHHHHHHHTT
T ss_pred ECCCCCcHHHHHHHHhc
Confidence 69999999999999875
No 250
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.39 E-value=0.00095 Score=44.98 Aligned_cols=18 Identities=22% Similarity=0.315 Sum_probs=16.1
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||++.|.+.
T Consensus 14 ~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 14 SGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp ECCTTSCHHHHHHHHHHS
T ss_pred ECcCCCCHHHHHHHHHhh
Confidence 599999999999999764
No 251
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.37 E-value=0.00093 Score=44.96 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=14.9
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|||||||++.+.+
T Consensus 28 ~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 28 SGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp ECCTTSCTHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999988754
No 252
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.33 E-value=0.0011 Score=47.41 Aligned_cols=19 Identities=42% Similarity=0.452 Sum_probs=16.7
Q ss_pred CCCCCCChhhhHhhhhccc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ 19 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~ 19 (157)
+|++|||||||++.+.+..
T Consensus 175 ~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 175 AGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp ECSTTSSHHHHHHHHSTTC
T ss_pred ECCCCCcHHHHHHHhcccc
Confidence 6999999999999998643
No 253
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.29 E-value=0.0012 Score=42.75 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=16.7
Q ss_pred CCCCCCChhhhHhhhhccc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQ 19 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~ 19 (157)
+|+.|+|||||++.+.+.-
T Consensus 39 ~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 39 NGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp ECSTTSSHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHhC
Confidence 5999999999999998754
No 254
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.28 E-value=0.0012 Score=47.23 Aligned_cols=16 Identities=38% Similarity=0.480 Sum_probs=15.2
Q ss_pred CCCCCCChhhhHhhhh
Q psy1873 1 MGYRSVGKSSLSIQFV 16 (157)
Q Consensus 1 vG~~~~GKssli~~~~ 16 (157)
+|++|||||||+|.+.
T Consensus 171 ~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 171 AGPSGVGKSSILSRLT 186 (302)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 6999999999999998
No 255
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.28 E-value=0.0012 Score=43.89 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+||+|||||||+++|+..
T Consensus 7 ~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 7 SGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 599999999999999754
No 256
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.24 E-value=0.0011 Score=45.35 Aligned_cols=18 Identities=28% Similarity=0.172 Sum_probs=15.9
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+-
T Consensus 36 iG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 36 IGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EECTTSCHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999998753
No 257
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.22 E-value=0.0013 Score=44.03 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=15.8
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||++++...
T Consensus 18 ~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 18 CGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 599999999999998753
No 258
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.22 E-value=0.0014 Score=45.32 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=16.1
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+-
T Consensus 30 iG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 30 LGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp ECCTTSSHHHHHHHHHTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999998763
No 259
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.22 E-value=0.0014 Score=45.87 Aligned_cols=18 Identities=22% Similarity=0.093 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||++.+.+-
T Consensus 38 iG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 38 IGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 699999999999998763
No 260
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.21 E-value=0.0017 Score=42.51 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=15.8
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+.
T Consensus 44 ~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 44 VGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCSSSSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999998753
No 261
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.20 E-value=0.0014 Score=43.27 Aligned_cols=17 Identities=29% Similarity=0.385 Sum_probs=15.4
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|+|||||++.+.+
T Consensus 8 ~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 8 TGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhc
Confidence 59999999999999974
No 262
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.19 E-value=0.0015 Score=46.15 Aligned_cols=17 Identities=41% Similarity=0.548 Sum_probs=15.7
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|||||||++.+.+
T Consensus 40 iGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 40 LGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp ECCTTSSHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHc
Confidence 69999999999999876
No 263
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.17 E-value=0.0014 Score=43.66 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=15.8
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++||||||+++.+.+.
T Consensus 12 ~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 12 SGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp ECSTTSCHHHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 599999999999998754
No 264
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.16 E-value=0.0016 Score=44.24 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=16.1
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|+.|+|||||++.+.+-
T Consensus 41 iG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 41 HGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 699999999999998763
No 265
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.16 E-value=0.0016 Score=44.95 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+-
T Consensus 37 ~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 37 VGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp ECSTTSSHHHHHHHHTTC
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 699999999999998763
No 266
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.14 E-value=0.0016 Score=45.47 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+-
T Consensus 39 iG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 39 IGPNGSGKSTLINVITGF 56 (257)
T ss_dssp ECSTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999998753
No 267
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.14 E-value=0.0016 Score=45.71 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=16.1
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+-
T Consensus 43 iG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 43 IGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp ECCTTSCHHHHHHHHTSS
T ss_pred ECCCCCcHHHHHHHHhcC
Confidence 699999999999998763
No 268
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.11 E-value=0.0017 Score=42.13 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=15.2
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++||||||+.+.+.+
T Consensus 10 ~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 10 VGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998865
No 269
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.10 E-value=0.0018 Score=45.45 Aligned_cols=18 Identities=22% Similarity=0.098 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+-
T Consensus 56 iG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 56 IGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred EcCCCCcHHHHHHHHHcC
Confidence 699999999999998763
No 270
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.07 E-value=0.0018 Score=44.93 Aligned_cols=18 Identities=28% Similarity=0.278 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+-
T Consensus 41 ~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 41 VGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp ECSTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 699999999999998763
No 271
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.07 E-value=0.0016 Score=44.00 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=16.3
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|+.|+|||||++.+.+-
T Consensus 28 iG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 28 LGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp ECCTTSSTTHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 699999999999998865
No 272
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.06 E-value=0.00047 Score=49.49 Aligned_cols=18 Identities=39% Similarity=0.361 Sum_probs=15.8
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||+|.+.+.
T Consensus 179 vG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 179 AGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp EESHHHHHHHHHHHHCC-
T ss_pred ECCCCCCHHHHHHHhccc
Confidence 699999999999999864
No 273
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.05 E-value=0.002 Score=44.24 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|+.|+|||||++.+.+-
T Consensus 40 ~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 40 AGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999998763
No 274
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.05 E-value=0.0019 Score=44.64 Aligned_cols=18 Identities=22% Similarity=0.084 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+-
T Consensus 34 ~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 34 AGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 699999999999998753
No 275
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.04 E-value=0.0019 Score=44.60 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|+.|+|||||++.+.+-
T Consensus 38 ~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 38 IGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp ECSTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999998763
No 276
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.04 E-value=0.002 Score=45.04 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=16.1
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|+.|+|||||++.+.+-
T Consensus 47 ~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 47 IGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 699999999999998763
No 277
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.04 E-value=0.002 Score=44.82 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|+.|+|||||++.+.+-
T Consensus 32 iG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 32 VGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCcHHHHHHHHhCC
Confidence 699999999999998763
No 278
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.03 E-value=0.0019 Score=43.14 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=15.0
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++||||||+++.+.+
T Consensus 35 ~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 35 MGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998854
No 279
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.02 E-value=0.0019 Score=42.42 Aligned_cols=18 Identities=17% Similarity=0.429 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||+++++..
T Consensus 12 ~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 12 AAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHh
Confidence 499999999999999864
No 280
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.01 E-value=0.0019 Score=41.69 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=15.1
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++||||||+.+.|.+
T Consensus 7 ~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 7 EGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp ECSSSSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999864
No 281
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.01 E-value=0.0019 Score=43.00 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=15.9
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+.
T Consensus 7 ~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 7 TGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp ESCCSSCHHHHHHHHHHH
T ss_pred ECCCCChHHHHHHHHHhh
Confidence 599999999999998753
No 282
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.00 E-value=0.0021 Score=44.74 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=16.2
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+-
T Consensus 35 ~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 35 MGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ECSTTSSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999999863
No 283
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.00 E-value=0.0021 Score=44.10 Aligned_cols=16 Identities=31% Similarity=0.627 Sum_probs=14.8
Q ss_pred CCCCCCChhhhHhhhh
Q psy1873 1 MGYRSVGKSSLSIQFV 16 (157)
Q Consensus 1 vG~~~~GKssli~~~~ 16 (157)
+|++|+|||||++.++
T Consensus 36 ~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 36 TGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHH
Confidence 5999999999999887
No 284
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.98 E-value=0.0021 Score=41.81 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=15.5
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++||||||+.+.+..
T Consensus 8 ~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 8 IGCPGSGKSTWAREFIA 24 (181)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHh
Confidence 49999999999999876
No 285
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.98 E-value=0.0021 Score=44.29 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=15.0
Q ss_pred CCCCCCChhhhHhhhh
Q psy1873 1 MGYRSVGKSSLSIQFV 16 (157)
Q Consensus 1 vG~~~~GKssli~~~~ 16 (157)
+|++|||||||++.+.
T Consensus 33 ~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 33 LGPPGSGKGTVCQRIA 48 (246)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999987
No 286
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.97 E-value=0.0022 Score=45.37 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|+.|+|||||++.+.+-
T Consensus 53 iG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 53 YGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCcHHHHHHHHhCC
Confidence 699999999999998753
No 287
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.96 E-value=0.0015 Score=44.56 Aligned_cols=16 Identities=13% Similarity=0.299 Sum_probs=11.1
Q ss_pred CCCCCCChhhhHhhhh
Q psy1873 1 MGYRSVGKSSLSIQFV 16 (157)
Q Consensus 1 vG~~~~GKssli~~~~ 16 (157)
+|++|||||||++.+.
T Consensus 33 ~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 33 SSPSGCGKTTVANKLL 48 (231)
T ss_dssp ECSCC----CHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999998
No 288
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.95 E-value=0.0023 Score=44.99 Aligned_cols=18 Identities=39% Similarity=0.512 Sum_probs=16.2
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|+.|+|||||++.+.+-
T Consensus 52 ~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 52 MGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECCTTSSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999999874
No 289
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.95 E-value=0.0022 Score=44.83 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=16.1
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+-
T Consensus 52 ~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 52 VGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp ECSTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 699999999999998763
No 290
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.94 E-value=0.0023 Score=45.09 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+-
T Consensus 51 ~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 51 VGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp ECSTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 699999999999998763
No 291
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.94 E-value=0.0023 Score=41.21 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=14.1
Q ss_pred CCCCCCChhhhHhhh
Q psy1873 1 MGYRSVGKSSLSIQF 15 (157)
Q Consensus 1 vG~~~~GKssli~~~ 15 (157)
.|++||||||+.+.+
T Consensus 7 ~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 7 TGMPGSGKSEFAKLL 21 (179)
T ss_dssp ECCTTSCHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 499999999999998
No 292
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.92 E-value=0.0024 Score=44.53 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=16.1
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+-
T Consensus 37 ~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 37 LGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp ECCSSSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999998763
No 293
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.89 E-value=0.0025 Score=44.75 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|+.|+|||||++.+.+-
T Consensus 39 iG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 39 AGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp ECSTTSSHHHHHHHHTTS
T ss_pred ECCCCCcHHHHHHHHhCC
Confidence 699999999999998753
No 294
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.86 E-value=0.0024 Score=44.72 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=15.5
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|||||||++.+.+
T Consensus 31 ~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 31 TGPTGSGKSTTIASMID 47 (261)
T ss_dssp ECSTTCSHHHHHHHHHH
T ss_pred ECCCCccHHHHHHHHHH
Confidence 59999999999999875
No 295
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.85 E-value=0.002 Score=43.66 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+...
T Consensus 31 ~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 31 FGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999999763
No 296
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.85 E-value=0.002 Score=43.25 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=15.2
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|||||||++.+.+
T Consensus 12 ~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 12 AGGTASGKTTLAQALAR 28 (211)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998865
No 297
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.83 E-value=0.0026 Score=41.37 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=14.8
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++||||||+++.+.+
T Consensus 14 ~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 14 MGVSGSGKSAVASEVAH 30 (175)
T ss_dssp ECSTTSCHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 59999999999988753
No 298
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.78 E-value=0.0028 Score=42.29 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=14.9
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++||||||+.+.+.+
T Consensus 31 ~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 31 TGLSGSGKSTLACALNQ 47 (200)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999988764
No 299
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.76 E-value=0.0031 Score=44.25 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=16.1
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+-
T Consensus 36 ~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 36 LGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999998764
No 300
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.76 E-value=0.0027 Score=45.50 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=15.3
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|+|||||++.+.+
T Consensus 132 vGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 132 IGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp ECSSSSSHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhh
Confidence 69999999999998874
No 301
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.72 E-value=0.0025 Score=46.73 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=16.1
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||++.+.+-
T Consensus 36 lGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 36 IGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EESTTSSHHHHHHHHHTS
T ss_pred ECCCCchHHHHHHHHhcC
Confidence 699999999999998763
No 302
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.72 E-value=0.0031 Score=46.14 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||++.+.+-
T Consensus 47 lGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 47 LGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp ECSTTSSHHHHHHHHHTS
T ss_pred ECCCCCcHHHHHHHHhCC
Confidence 699999999999998753
No 303
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.71 E-value=0.0032 Score=46.50 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=16.1
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||++.+.+-
T Consensus 35 lGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 35 VGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp ECCTTSSHHHHHHHHHTS
T ss_pred EcCCCchHHHHHHHHHcC
Confidence 699999999999998763
No 304
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.71 E-value=0.003 Score=42.08 Aligned_cols=17 Identities=35% Similarity=0.517 Sum_probs=15.0
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++||||||+++.|.+
T Consensus 24 ~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 24 MGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp ECSTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998854
No 305
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.70 E-value=0.0032 Score=40.95 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=15.2
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++||||||+.+.|.+
T Consensus 9 ~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 9 NGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999865
No 306
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.69 E-value=0.0031 Score=45.35 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=15.1
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|||||||++.+.+
T Consensus 96 ~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 96 AGSVAVGKSTTARVLQA 112 (312)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCchHHHHHHHHHh
Confidence 59999999999998764
No 307
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.69 E-value=0.0033 Score=46.12 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||++.+.+-
T Consensus 35 lGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 35 LGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp ECCTTSSHHHHHHHHHTS
T ss_pred ECCCCchHHHHHHHHhcC
Confidence 699999999999998763
No 308
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.68 E-value=0.0026 Score=40.62 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||+|++.+.+.
T Consensus 42 ~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 42 WGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp ESSSTTTTCHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999998764
No 309
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.68 E-value=0.0034 Score=46.13 Aligned_cols=17 Identities=29% Similarity=0.237 Sum_probs=15.6
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|||||||++.+.+
T Consensus 60 iGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 60 IGASGAGKSTLIRCVNL 76 (366)
T ss_dssp ECCTTSSHHHHHHHHHT
T ss_pred EcCCCchHHHHHHHHhc
Confidence 69999999999999875
No 310
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.67 E-value=0.0033 Score=46.08 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||++.+.+-
T Consensus 35 lGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 35 LGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp ECSTTSSHHHHHHHHHTS
T ss_pred EcCCCchHHHHHHHHHCC
Confidence 699999999999998753
No 311
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.66 E-value=0.0033 Score=41.88 Aligned_cols=17 Identities=35% Similarity=0.673 Sum_probs=15.0
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++||||||+...+.+
T Consensus 31 ~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 31 TGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 59999999999998863
No 312
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.61 E-value=0.0036 Score=46.10 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=16.1
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||++.+.+-
T Consensus 35 lGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 35 LGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp ECSTTSSHHHHHHHHHTS
T ss_pred ECCCCcHHHHHHHHHHcC
Confidence 699999999999998763
No 313
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.59 E-value=0.0038 Score=45.98 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=15.9
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||++.+.+-
T Consensus 43 lGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 43 LGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp ECCTTSSHHHHHHHHHTS
T ss_pred ECCCCChHHHHHHHHHcC
Confidence 699999999999998753
No 314
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.50 E-value=0.0041 Score=42.08 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=15.0
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++||||||+++.+.+
T Consensus 11 ~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 11 DGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998864
No 315
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.44 E-value=0.0037 Score=44.49 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=15.9
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|+.|+|||||++.+.+-
T Consensus 70 ~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 70 AGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EESTTSSHHHHHHHHTTS
T ss_pred ECCCCCcHHHHHHHHhcC
Confidence 599999999999998763
No 316
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.44 E-value=0.0046 Score=40.44 Aligned_cols=17 Identities=35% Similarity=0.753 Sum_probs=15.2
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|||||||+.++..
T Consensus 10 ~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 10 VGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999999875
No 317
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.43 E-value=0.0054 Score=40.20 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=14.9
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++||||||+++.|..
T Consensus 9 ~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 9 TGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998854
No 318
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.42 E-value=0.0045 Score=41.01 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=15.1
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|.+||||||+++.+.+
T Consensus 6 ~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 6 FGTVGAGKSTISAEISK 22 (205)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCccCHHHHHHHHHH
Confidence 49999999999998865
No 319
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.42 E-value=0.0044 Score=44.40 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=14.8
Q ss_pred CCCCCCChhhhHhhhh
Q psy1873 1 MGYRSVGKSSLSIQFV 16 (157)
Q Consensus 1 vG~~~~GKssli~~~~ 16 (157)
+|++||||||+++.+.
T Consensus 108 vG~nGsGKTTll~~La 123 (304)
T 1rj9_A 108 VGVNGVGKTTTIAKLG 123 (304)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHH
Confidence 6999999999999986
No 320
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.41 E-value=0.0046 Score=42.74 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=15.9
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||+|++.+.+.
T Consensus 55 ~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 55 VGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999998753
No 321
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.41 E-value=0.0048 Score=41.17 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.3
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++||||||+.+.|.+
T Consensus 8 ~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 8 TGGIGSGKTTIANLFTD 24 (206)
T ss_dssp ECSTTSCHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999999865
No 322
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.39 E-value=0.0044 Score=43.62 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=15.4
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|+|||+|++.+.+
T Consensus 50 ~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 50 AGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp ESSTTSCHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHH
Confidence 49999999999999875
No 323
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.38 E-value=0.0048 Score=40.37 Aligned_cols=17 Identities=18% Similarity=0.390 Sum_probs=15.0
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++||||||+.+.|.+
T Consensus 10 ~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 10 LGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998863
No 324
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.37 E-value=0.0031 Score=46.01 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||++.+.+-
T Consensus 32 lGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 32 LGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp ECCCTHHHHHHHHHHHTS
T ss_pred ECCCCccHHHHHHHHHcC
Confidence 699999999999998753
No 325
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.37 E-value=0.0045 Score=40.58 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=15.0
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++||||||+++.|..
T Consensus 7 ~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 7 TGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EECTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998864
No 326
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.36 E-value=0.0059 Score=39.67 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=15.7
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
.|++|+|||+|++.+...
T Consensus 49 ~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 49 IGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999988754
No 327
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.35 E-value=0.0048 Score=44.12 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=15.2
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++||||||+++.+.+
T Consensus 106 vG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 106 VGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 69999999999999863
No 328
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.34 E-value=0.0049 Score=42.49 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=15.2
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|+.|||||||++.+.+
T Consensus 31 ~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 31 SGGTASGKSTVCEKIME 47 (245)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998865
No 329
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.33 E-value=0.0017 Score=42.55 Aligned_cols=17 Identities=24% Similarity=0.472 Sum_probs=15.4
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|||||||++.+.+
T Consensus 8 vG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 8 VGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EESCHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 58999999999999875
No 330
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.30 E-value=0.0042 Score=45.51 Aligned_cols=18 Identities=33% Similarity=0.338 Sum_probs=15.8
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+.
T Consensus 176 vG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 176 LGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp ECCTTSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 699999999999998753
No 331
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.28 E-value=0.0042 Score=40.86 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=14.9
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|.+||||||+.+.+..
T Consensus 11 ~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 11 TGHPATGKTTLSQALAT 27 (193)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998854
No 332
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.28 E-value=0.0034 Score=45.04 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=15.4
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
||++|+|||||++.+.+
T Consensus 86 vG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 86 VGPSGAGKSTILRLLFR 102 (306)
T ss_dssp ESSSCHHHHHHHHHHTT
T ss_pred ECCCCchHHHHHHHHHc
Confidence 69999999999998875
No 333
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.27 E-value=0.005 Score=43.64 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=15.2
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++||||||++.++..
T Consensus 39 ~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 39 GGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp ECCTTSCTHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999864
No 334
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.26 E-value=0.0057 Score=41.29 Aligned_cols=17 Identities=29% Similarity=0.595 Sum_probs=15.3
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|+|||||+..+..
T Consensus 29 ~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 29 TGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 59999999999999874
No 335
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.24 E-value=0.0059 Score=39.97 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=15.0
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++||||||+...+..
T Consensus 11 ~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 11 IGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998853
No 336
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.21 E-value=0.0047 Score=45.79 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=15.4
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|||||||++.+.+
T Consensus 53 lGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 53 LGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EESTTSSHHHHHHHHHT
T ss_pred ECCCCChHHHHHHHHhC
Confidence 69999999999999875
No 337
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.19 E-value=0.0056 Score=44.27 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=15.8
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+.
T Consensus 57 ~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 57 AGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp ESSTTSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHH
Confidence 499999999999998753
No 338
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.17 E-value=0.0058 Score=44.76 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=15.4
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|+.|||||||++.+++
T Consensus 129 ~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 129 TGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp ECSTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 59999999999999875
No 339
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.14 E-value=0.0062 Score=43.97 Aligned_cols=16 Identities=38% Similarity=0.362 Sum_probs=14.3
Q ss_pred CCCCCCChhhhHhhhh
Q psy1873 1 MGYRSVGKSSLSIQFV 16 (157)
Q Consensus 1 vG~~~~GKssli~~~~ 16 (157)
+|++|||||||++.+.
T Consensus 98 ~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 98 AGSVAVGKSTTSRVLK 113 (321)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 4999999999998874
No 340
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.13 E-value=0.0064 Score=41.52 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=15.7
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|+.||||||+++.+.+.
T Consensus 26 ~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 26 EGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp ECSTTSCHHHHHHTTGGG
T ss_pred ECCCCCCHHHHHHHHHhc
Confidence 499999999999998764
No 341
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.12 E-value=0.0075 Score=39.73 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=15.2
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|.+||||||++++|.+
T Consensus 6 ~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 6 EGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 39999999999999865
No 342
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.10 E-value=0.0065 Score=41.00 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=15.1
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|+|||||+|...++.+
T Consensus 6 ~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 6 LGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998864
No 343
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.08 E-value=0.0031 Score=46.10 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||++.+.+-
T Consensus 37 lGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 37 LGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp ECSCHHHHHHHHHHHHTS
T ss_pred ECCCCCcHHHHHHHHhCC
Confidence 699999999999998763
No 344
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.08 E-value=0.0066 Score=40.78 Aligned_cols=17 Identities=29% Similarity=0.560 Sum_probs=14.9
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++||||||+.+.|..
T Consensus 6 ~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 6 MGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999853
No 345
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.04 E-value=0.0083 Score=39.96 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=15.1
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++||||||+++.|..
T Consensus 10 ~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 10 EGIDGSGKSSQATLLKD 26 (213)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 49999999999999864
No 346
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.03 E-value=0.0056 Score=40.75 Aligned_cols=17 Identities=29% Similarity=0.468 Sum_probs=15.0
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++||||||+.+.+.+
T Consensus 7 ~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 7 TGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHH
Confidence 49999999999998864
No 347
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.03 E-value=0.0075 Score=39.18 Aligned_cols=17 Identities=29% Similarity=0.599 Sum_probs=14.7
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++||||||+.+.+..
T Consensus 10 ~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 10 IGFMGSGKSTLARALAK 26 (175)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 49999999999988753
No 348
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.01 E-value=0.0071 Score=42.43 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=15.9
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||+|++.+.+.
T Consensus 79 ~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 79 VGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCcChHHHHHHHHHHH
Confidence 599999999999998753
No 349
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.01 E-value=0.0071 Score=40.67 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=14.9
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++||||||+.+.|..
T Consensus 6 ~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 6 MGLPGAGKGTQGERIVE 22 (216)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999853
No 350
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.99 E-value=0.0075 Score=39.59 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=14.8
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|.+||||||+.+.|..
T Consensus 9 ~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 9 LGGPGAGKGTQCARIVE 25 (196)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999988754
No 351
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.99 E-value=0.0061 Score=40.73 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=15.6
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++||||||+++.+.+.
T Consensus 27 ~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 27 SGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EESTTSSHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 489999999999998753
No 352
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.98 E-value=0.0069 Score=44.58 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=15.6
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++||||||+++.+.+
T Consensus 142 vG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 142 TGPTGSGKSTTIASMID 158 (372)
T ss_dssp ECSSSSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 59999999999999875
No 353
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.97 E-value=0.0063 Score=39.72 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=14.9
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|+.|+|||||+..+..
T Consensus 32 ~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 32 VGANGSGKSNIGDAILF 48 (182)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998753
No 354
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.93 E-value=0.0061 Score=43.60 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=15.1
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|||||||++.+.+
T Consensus 86 ~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 86 AGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998865
No 355
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.92 E-value=0.0083 Score=40.86 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||+..+...
T Consensus 30 ~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 30 FGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHH
Confidence 599999999999999863
No 356
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.91 E-value=0.0069 Score=43.84 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+-
T Consensus 177 ~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 177 CGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp EESTTSCHHHHHHHGGGG
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999998864
No 357
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.91 E-value=0.0079 Score=41.77 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=15.0
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|||||||...+.+
T Consensus 7 ~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 7 YGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHh
Confidence 59999999999998854
No 358
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.90 E-value=0.0083 Score=40.20 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=15.5
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|+|||||+..+..
T Consensus 26 ~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 26 YGPYASGKTTLALQTGL 42 (220)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999976
No 359
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.90 E-value=0.0084 Score=39.09 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=15.0
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|.+||||||+.+.+..
T Consensus 17 ~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 17 TGTPGVGKTTLGKELAS 33 (180)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHH
Confidence 49999999999998863
No 360
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.89 E-value=0.008 Score=40.91 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=15.0
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|+|||||+|...++.+
T Consensus 35 lGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 35 LGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp ECCTTCCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999988864
No 361
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.88 E-value=0.0065 Score=40.54 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=14.8
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++||||||+++.+.+
T Consensus 28 ~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 28 DGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999998864
No 362
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.88 E-value=0.0084 Score=39.34 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=15.0
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|.+||||||+++.+..
T Consensus 19 ~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 19 TGLPGSGKTTIATRLAD 35 (186)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 49999999999998864
No 363
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.86 E-value=0.057 Score=39.54 Aligned_cols=16 Identities=38% Similarity=0.310 Sum_probs=14.6
Q ss_pred CCCCCCChhhhHhhhh
Q psy1873 1 MGYRSVGKSSLSIQFV 16 (157)
Q Consensus 1 vG~~~~GKssli~~~~ 16 (157)
+|+.|+|||||++.++
T Consensus 29 ~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 29 EGPNGAGKSSLFEAIS 44 (365)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999876
No 364
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.84 E-value=0.0082 Score=44.00 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=15.2
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
||++||||||++..+.+
T Consensus 163 vG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 163 VGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred EcCCCChHHHHHHHHHh
Confidence 69999999999998864
No 365
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.83 E-value=0.0068 Score=44.43 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=15.9
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|+.|+|||||++.+.+-
T Consensus 181 vG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 181 AGETGSGKTTLMKALMQE 198 (361)
T ss_dssp EESSSSCHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHhc
Confidence 599999999999999763
No 366
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.78 E-value=0.025 Score=42.73 Aligned_cols=56 Identities=21% Similarity=0.180 Sum_probs=32.8
Q ss_pred CCCCCCChhhhHhhhhc------------------cccc---ccccCCcc-ceEEEE--EE-ECCeEEEEEEEeCCCCcc
Q psy1873 1 MGYRSVGKSSLSIQFVD------------------GQFV---DSYDPTIE-NTFVKT--TR-MNNQDYDLKLVDTAGQDE 55 (157)
Q Consensus 1 vG~~~~GKssli~~~~~------------------~~~~---~~~~~t~~-~~~~~~--~~-~~~~~~~~~i~D~~g~~~ 55 (157)
+|+.++|||+|+|.+++ ..|. .....|.| ..+... +. .++....+.+.||.|...
T Consensus 73 ~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDTEG~~d 152 (457)
T 4ido_A 73 AGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFD 152 (457)
T ss_dssp EEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEECCBTC
T ss_pred ECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEeccCCCC
Confidence 59999999999996542 1221 11223334 222111 11 256677899999999644
Q ss_pred C
Q psy1873 56 Y 56 (157)
Q Consensus 56 ~ 56 (157)
.
T Consensus 153 ~ 153 (457)
T 4ido_A 153 S 153 (457)
T ss_dssp T
T ss_pred c
Confidence 3
No 367
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.76 E-value=0.011 Score=39.18 Aligned_cols=18 Identities=17% Similarity=0.438 Sum_probs=15.6
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
.|++||||||+++.|.+.
T Consensus 10 ~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 10 EGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp ECCTTSSHHHHHHHHHHT
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 499999999999998753
No 368
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.75 E-value=0.011 Score=40.06 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=15.2
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++|+|||+|+..+..
T Consensus 58 ~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 58 WGPVKSGRTHLIHAACA 74 (242)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999875
No 369
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.73 E-value=0.0096 Score=39.57 Aligned_cols=17 Identities=18% Similarity=0.520 Sum_probs=15.0
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|.+||||||+.+.|..
T Consensus 26 ~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 26 LGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998864
No 370
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.73 E-value=0.0098 Score=41.24 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=14.8
Q ss_pred CCCCCCChhhhHhhhh
Q psy1873 1 MGYRSVGKSSLSIQFV 16 (157)
Q Consensus 1 vG~~~~GKssli~~~~ 16 (157)
+|++||||||+++.+.
T Consensus 33 ~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 33 DGPSGAGKGTLCKALA 48 (252)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999987
No 371
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.73 E-value=0.087 Score=34.75 Aligned_cols=88 Identities=15% Similarity=0.047 Sum_probs=54.8
Q ss_pred EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEe
Q psy1873 42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN 121 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~n 121 (157)
.+.+.++|+++.. .......+..+|.++++...+... ..+...+..+...... .+..++.+|.|
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~------------~~~~~~~vv~N 138 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAY------------SRKVEARFLIT 138 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCG------------GGCCEEEEEEC
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHh------------CCCCcEEEEEe
Confidence 3678899999765 334455667789999998766443 5665555555433211 11267899999
Q ss_pred CCCCCCCceecHHHHHHHHHHhCCcEE
Q psy1873 122 KKDLHMERMISYDEGKRLAESWKAGFV 148 (157)
Q Consensus 122 K~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (157)
+.|... ... .+..++.+.++.+++
T Consensus 139 ~~~~~~--~~~-~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 139 RKIEMA--TML-NVLKESIKDTGVKAF 162 (206)
T ss_dssp SBCTTE--EEE-HHHHHHHHHHTCCBC
T ss_pred ccCCCc--hHH-HHHHHHHHHcCCcee
Confidence 999532 222 445566666676544
No 372
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.72 E-value=0.011 Score=38.75 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=15.1
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|.+||||||+.+.|.+
T Consensus 6 ~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 6 EGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp ECSTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999865
No 373
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.72 E-value=0.0075 Score=39.06 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.6
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
.|++|+|||+|++.+...
T Consensus 49 ~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 49 LGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp ESCGGGCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999988754
No 374
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.72 E-value=0.0096 Score=40.19 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=14.9
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|.+||||||+.+.|..
T Consensus 10 ~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 10 IGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998854
No 375
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.71 E-value=0.0096 Score=39.10 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=15.5
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|.+||||||+.+.|...
T Consensus 16 ~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 16 TGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 499999999999988654
No 376
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.69 E-value=0.0028 Score=42.45 Aligned_cols=17 Identities=24% Similarity=0.349 Sum_probs=15.0
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++||||||+++.|..
T Consensus 6 ~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 6 EGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 48999999999999864
No 377
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.65 E-value=0.0098 Score=45.43 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=15.1
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
||++|||||||++.+.+
T Consensus 299 VGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 299 VGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCcccHHHHHHHHHH
Confidence 69999999999998863
No 378
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.64 E-value=0.01 Score=41.06 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=15.3
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++|+|||+|++.+.+
T Consensus 51 ~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 51 VGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHH
Confidence 49999999999999875
No 379
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.64 E-value=0.0082 Score=39.52 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=14.8
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++||||||+.+.|..
T Consensus 15 ~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 15 VGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998853
No 380
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.64 E-value=0.011 Score=37.59 Aligned_cols=16 Identities=38% Similarity=0.459 Sum_probs=14.3
Q ss_pred CCCCCCChhhhHhhhh
Q psy1873 1 MGYRSVGKSSLSIQFV 16 (157)
Q Consensus 1 vG~~~~GKssli~~~~ 16 (157)
+|+.|+|||+|+..+.
T Consensus 29 ~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 29 IGQNGSGKSSLLDAIL 44 (149)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999998875
No 381
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.63 E-value=0.01 Score=42.17 Aligned_cols=16 Identities=44% Similarity=0.412 Sum_probs=14.1
Q ss_pred CCCCCCChhhhHhhhh
Q psy1873 1 MGYRSVGKSSLSIQFV 16 (157)
Q Consensus 1 vG~~~~GKssli~~~~ 16 (157)
+|++|||||||++.+.
T Consensus 37 ~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 37 SGPQGSGKSFTSIQIY 52 (290)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 4999999999998775
No 382
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.62 E-value=0.0083 Score=40.75 Aligned_cols=16 Identities=31% Similarity=0.493 Sum_probs=14.4
Q ss_pred CCCCCCChhhhHhhhh
Q psy1873 1 MGYRSVGKSSLSIQFV 16 (157)
Q Consensus 1 vG~~~~GKssli~~~~ 16 (157)
+|++||||||+.+.|.
T Consensus 13 ~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 13 MGAPGSGKGTVSSRIT 28 (227)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 4999999999999885
No 383
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.62 E-value=0.011 Score=38.57 Aligned_cols=17 Identities=24% Similarity=0.554 Sum_probs=15.0
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|.+||||||+.+.|.+
T Consensus 11 ~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 11 TGLSGAGKTTVSMALEE 27 (179)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998865
No 384
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.60 E-value=0.0082 Score=40.59 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=14.9
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++||||||+.+.|..
T Consensus 11 ~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 11 SGAPASGKGTQCELIKT 27 (222)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998853
No 385
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.60 E-value=0.011 Score=40.82 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=15.1
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++||||||+..+|.+
T Consensus 35 ~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 35 LGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999864
No 386
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.58 E-value=0.0071 Score=43.48 Aligned_cols=18 Identities=22% Similarity=0.503 Sum_probs=16.1
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|+.|+|||||++.+.+.
T Consensus 10 ~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 10 TGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EESSSSSCHHHHHHHHHS
T ss_pred EecCCCCHHHHHHHHHhh
Confidence 489999999999999864
No 387
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.58 E-value=0.011 Score=40.18 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=14.9
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++||||||+++.|..
T Consensus 6 ~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 6 FGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998854
No 388
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=94.57 E-value=0.0059 Score=41.88 Aligned_cols=18 Identities=33% Similarity=0.422 Sum_probs=15.7
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||+..+...
T Consensus 33 ~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 33 SGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HSCCSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 599999999999998653
No 389
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.57 E-value=0.0084 Score=42.43 Aligned_cols=18 Identities=22% Similarity=0.093 Sum_probs=15.6
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||+..+...
T Consensus 41 ~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 41 TSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 599999999999988653
No 390
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.56 E-value=0.01 Score=44.39 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|+.|+|||||++.+++.
T Consensus 173 ~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 173 TGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp ECSTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 599999999999998763
No 391
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.55 E-value=0.0089 Score=39.45 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=14.9
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++||||||+.+.|..
T Consensus 18 ~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 18 IGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999988864
No 392
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.53 E-value=0.0071 Score=41.94 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=14.8
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++||||||+.+.+..
T Consensus 38 ~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 38 GGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp ESCGGGTTHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998754
No 393
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.53 E-value=0.59 Score=33.00 Aligned_cols=86 Identities=16% Similarity=0.108 Sum_probs=54.9
Q ss_pred EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEE-EEE
Q psy1873 42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIV-LVG 120 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~-vv~ 120 (157)
.+.+.|+|+++...... ....+..+|.+|++... +..++..+...+..+....... ..+++ +|.
T Consensus 156 ~yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~-------------~~~~~gvV~ 220 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNY-------------KVRLAGCVA 220 (307)
T ss_dssp SCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTC-------------CCEEEEEEE
T ss_pred cCCEEEEeCCCccchHH-HHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhhhcC-------------CCceEEEEE
Confidence 36788999976543222 23456778999988764 4667777777666665432221 26655 899
Q ss_pred eCCCCCCCceecHHHHHHHHHHhCCcEEE
Q psy1873 121 NKKDLHMERMISYDEGKRLAESWKAGFVE 149 (157)
Q Consensus 121 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e 149 (157)
|+.+-. .....+++.++++++.
T Consensus 221 N~~~~~-------~~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 221 NRSRAT-------DEVDRFCKETNFRRLA 242 (307)
T ss_dssp ESCSCC-------HHHHHHHHHHTCCEEE
T ss_pred ecCCcH-------HHHHHHHHHcCCCcee
Confidence 999831 3456667777876553
No 394
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.51 E-value=0.013 Score=38.80 Aligned_cols=18 Identities=28% Similarity=0.312 Sum_probs=15.5
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
.|++|+|||+|+..+...
T Consensus 60 ~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 60 HGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 399999999999988753
No 395
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.48 E-value=0.013 Score=39.34 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=15.1
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++|+|||+|++.+.+
T Consensus 51 ~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 51 SGTRGVGKTSIARLLAK 67 (250)
T ss_dssp ECSTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 39999999999999865
No 396
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.46 E-value=0.012 Score=40.89 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=15.0
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|.+||||||+.+.+..
T Consensus 10 ~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 10 TGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 49999999999998864
No 397
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.44 E-value=0.015 Score=37.44 Aligned_cols=17 Identities=18% Similarity=0.444 Sum_probs=14.8
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|.+||||||+.+.|..
T Consensus 8 ~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 8 VGARGCGMTTVGRELAR 24 (173)
T ss_dssp ESCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999988854
No 398
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.44 E-value=0.013 Score=38.33 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=14.8
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|.+||||||+...|..
T Consensus 8 ~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 8 VGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999988854
No 399
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.43 E-value=0.014 Score=38.74 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=15.5
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
.|++|+|||+++..+...
T Consensus 44 ~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 44 SGPPGTGKTATAIALARD 61 (226)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 399999999999988753
No 400
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.42 E-value=0.011 Score=39.37 Aligned_cols=17 Identities=35% Similarity=0.425 Sum_probs=15.0
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|.+||||||+.+.|.+
T Consensus 16 ~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 16 EGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 48999999999999864
No 401
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=94.39 E-value=0.0096 Score=45.11 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=15.9
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|+.|||||||++.+++-
T Consensus 144 vGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 144 VGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp EESTTSSHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHhCc
Confidence 699999999999998753
No 402
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.36 E-value=0.015 Score=39.74 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=15.1
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++||||||+++++.+
T Consensus 32 ~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 32 EGPEGSGKTTVINEVYH 48 (229)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 49999999999999865
No 403
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.35 E-value=0.01 Score=39.92 Aligned_cols=17 Identities=18% Similarity=0.343 Sum_probs=14.9
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++||||||+.+.|..
T Consensus 6 ~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 6 LGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998864
No 404
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.34 E-value=0.013 Score=45.19 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=16.3
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
||+.|+|||||++.+.+.
T Consensus 31 iGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 31 LGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCcHHHHHHHHhcC
Confidence 699999999999998864
No 405
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.34 E-value=0.011 Score=45.31 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=15.9
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|+.||||||+++.+++-
T Consensus 266 ~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 266 VGETASGKTTTLNAIMMF 283 (511)
T ss_dssp EESTTSSHHHHHHHHGGG
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 599999999999999763
No 406
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.34 E-value=0.016 Score=37.21 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=14.9
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|.+||||||+.+.|..
T Consensus 6 ~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 6 IGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp ESCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998864
No 407
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.33 E-value=0.015 Score=38.53 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=14.8
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|.+||||||+.+.|..
T Consensus 21 ~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 21 LGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999988863
No 408
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.33 E-value=0.012 Score=38.27 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=10.9
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|.+||||||+.+.|..
T Consensus 11 ~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 11 NGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp ECCC----CHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999863
No 409
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.26 E-value=0.014 Score=44.54 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=15.2
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|+|||||++.+.+
T Consensus 35 iG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 35 SGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhc
Confidence 69999999999998864
No 410
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.25 E-value=0.011 Score=43.12 Aligned_cols=18 Identities=33% Similarity=0.397 Sum_probs=16.3
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||++.+.+.
T Consensus 77 iG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 77 FAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EECTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999875
No 411
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.24 E-value=0.014 Score=45.01 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=16.2
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|+.|+|||||++.+.+.
T Consensus 53 vG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 53 VGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp ECCTTSSHHHHHHHHHTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999998764
No 412
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.24 E-value=0.011 Score=39.91 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=14.4
Q ss_pred CCCCCChhhhHhhhhc
Q psy1873 2 GYRSVGKSSLSIQFVD 17 (157)
Q Consensus 2 G~~~~GKssli~~~~~ 17 (157)
|+||+|||+++..+.+
T Consensus 65 GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 65 GPANTGKSYFGMSFIH 80 (212)
T ss_dssp SCGGGCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999999988865
No 413
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.23 E-value=0.014 Score=39.14 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=14.8
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|.+|+||||+++.+.+
T Consensus 31 ~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 31 TGLSASGKSTLAVELEH 47 (211)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998754
No 414
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.23 E-value=0.013 Score=39.09 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=15.0
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|.+||||||+++.|..
T Consensus 15 ~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 15 EGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999999864
No 415
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.20 E-value=0.014 Score=38.23 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=14.8
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|.+||||||+.+.|..
T Consensus 12 ~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 12 LGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999998854
No 416
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.15 E-value=0.017 Score=40.49 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=15.2
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++|+|||+|++.+..
T Consensus 57 ~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 57 YGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp ESSSSSSHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHH
Confidence 39999999999999865
No 417
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.10 E-value=0.016 Score=45.44 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=16.1
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
||++|+|||||++.+.+-
T Consensus 109 vGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 109 VGTNGIGKSTALKILAGK 126 (608)
T ss_dssp ECCTTSSHHHHHHHHHTS
T ss_pred ECCCCChHHHHHHHHhcC
Confidence 699999999999998763
No 418
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.07 E-value=0.015 Score=42.85 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=15.3
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|+|||||++.+.+
T Consensus 175 ~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 175 KGPIDSGKTTLAAALLE 191 (377)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHh
Confidence 59999999999998874
No 419
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.06 E-value=0.016 Score=40.98 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=15.3
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|.+||||||+.+++..
T Consensus 8 ~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 8 IGCPGSGKSTWAREFIA 24 (301)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999875
No 420
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.04 E-value=0.018 Score=41.21 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=15.2
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++|+|||+|++.+.+
T Consensus 43 ~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 43 YGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp ECSSSSSHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHH
Confidence 39999999999999875
No 421
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.02 E-value=0.018 Score=40.61 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=15.3
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++|+|||++++.+.+
T Consensus 60 ~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 60 FGPPGNGKTLLARAVAT 76 (297)
T ss_dssp ESSSSSCHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHH
Confidence 49999999999999875
No 422
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.02 E-value=0.015 Score=41.20 Aligned_cols=16 Identities=25% Similarity=0.158 Sum_probs=14.8
Q ss_pred CCCCCChhhhHhhhhc
Q psy1873 2 GYRSVGKSSLSIQFVD 17 (157)
Q Consensus 2 G~~~~GKssli~~~~~ 17 (157)
|+||+|||+|++.+..
T Consensus 43 GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 43 GGKGQGKSFQCELVFR 58 (293)
T ss_dssp ECTTSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999999999875
No 423
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.00 E-value=0.019 Score=39.80 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=15.2
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++|+|||+|++.+..
T Consensus 50 ~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 50 VGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp BCSSCSSHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHH
Confidence 49999999999999865
No 424
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.98 E-value=0.02 Score=39.47 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=15.2
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++|+|||++++.+..
T Consensus 45 ~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 45 LGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp ESCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 39999999999999875
No 425
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.95 E-value=0.018 Score=44.83 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=15.6
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|+|||||++.+.+
T Consensus 375 vG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 375 VGRSGSGKSTIANLFTR 391 (582)
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 69999999999999875
No 426
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.92 E-value=0.018 Score=39.27 Aligned_cols=17 Identities=18% Similarity=0.366 Sum_probs=14.9
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|.+||||||+.+.|..
T Consensus 22 ~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 22 LGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998854
No 427
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.91 E-value=0.016 Score=45.15 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=15.4
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|+|||||++.+.+
T Consensus 373 vG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 373 VGMSGGGKSTLINLIPR 389 (578)
T ss_dssp ECSTTSSHHHHHTTTTT
T ss_pred ECCCCChHHHHHHHHhc
Confidence 69999999999998875
No 428
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.91 E-value=0.014 Score=43.92 Aligned_cols=18 Identities=28% Similarity=0.123 Sum_probs=16.1
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|||||||++.+.+.
T Consensus 163 vG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 163 FAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EECTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 599999999999998764
No 429
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.90 E-value=0.016 Score=45.21 Aligned_cols=17 Identities=24% Similarity=0.346 Sum_probs=15.6
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|+|||||++.+.+
T Consensus 376 vG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 376 VGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp ECCTTSSSTHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 69999999999999875
No 430
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.89 E-value=0.018 Score=40.05 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=14.9
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|+||||+.+.+.+
T Consensus 54 ~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 54 VGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp ECSTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999988853
No 431
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.89 E-value=0.015 Score=39.57 Aligned_cols=17 Identities=35% Similarity=0.370 Sum_probs=14.5
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|+|||+|+.+++.
T Consensus 29 ~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 29 SGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999888753
No 432
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.87 E-value=0.015 Score=39.26 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=14.8
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|.+||||||+.+.|..
T Consensus 11 ~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 11 IGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998854
No 433
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.85 E-value=0.015 Score=40.77 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=15.2
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|+|||||+..+..
T Consensus 36 ~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 36 VSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 58999999999999875
No 434
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.83 E-value=0.024 Score=36.44 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=14.7
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|.+||||||+.+.|..
T Consensus 13 ~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 13 IGFMGSGKSSLAQELGL 29 (168)
T ss_dssp ESCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998853
No 435
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.80 E-value=0.016 Score=45.14 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=15.5
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|+|||||++.+.+
T Consensus 375 vG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 375 VGRSGSGKSTIASLITR 391 (582)
T ss_dssp EECTTSSHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHhh
Confidence 69999999999999875
No 436
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=93.80 E-value=0.66 Score=31.32 Aligned_cols=86 Identities=14% Similarity=0.084 Sum_probs=55.1
Q ss_pred EEEEEEEeCCCCccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEEe
Q psy1873 42 DYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN 121 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~n 121 (157)
.+.+.|+|+++.. .......+..+|.+|++... +..++..+...+..+...... ...+.+|.|
T Consensus 118 ~yD~viiD~p~~~--~~~~~~~l~~ad~viiv~~~-~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~v~N 180 (245)
T 3ea0_A 118 FYDYIIVDFGASI--DHVGVWVLEHLDELCIVTTP-SLQSLRRAGQLLKLCKEFEKP--------------ISRIEIILN 180 (245)
T ss_dssp HCSEEEEEEESSC--CTTHHHHGGGCSEEEEEECS-SHHHHHHHHHHHHHHHTCSSC--------------CSCEEEEEE
T ss_pred hCCEEEEeCCCCC--chHHHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhCCC--------------ccceEEEEe
Confidence 4678899998754 23455567789999998775 467777777776666433211 156889999
Q ss_pred CCCCCCCceecHHHHHHHHHHhCCcEEE
Q psy1873 122 KKDLHMERMISYDEGKRLAESWKAGFVE 149 (157)
Q Consensus 122 K~Dl~~~~~~~~~~~~~~~~~~~~~~~e 149 (157)
+.+... .... +.+.+.++.+++.
T Consensus 181 ~~~~~~--~~~~---~~~~~~~~~~v~~ 203 (245)
T 3ea0_A 181 RADTNS--RITS---DEIEKVIGRPISK 203 (245)
T ss_dssp STTSCT--TSCH---HHHHHHHTSCEEE
T ss_pred cCCCCC--CCCH---HHHHHHhCCCeEE
Confidence 998533 2222 3444556766554
No 437
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.77 E-value=0.02 Score=44.87 Aligned_cols=18 Identities=17% Similarity=0.254 Sum_probs=16.2
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|+.|+|||||++.+.+.
T Consensus 123 iG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 123 VGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCChHHHHHHHHhCC
Confidence 699999999999998764
No 438
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.77 E-value=0.019 Score=44.91 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=15.5
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|+|||||++.+.+
T Consensus 387 vG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 387 VGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp ECCTTSSTTHHHHHHTT
T ss_pred ECCCCCcHHHHHHHHhc
Confidence 69999999999998875
No 439
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.75 E-value=0.021 Score=41.18 Aligned_cols=17 Identities=18% Similarity=0.434 Sum_probs=15.4
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++|+||||+++.+.+
T Consensus 42 ~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 42 YGPNGTGKKTRCMALLE 58 (354)
T ss_dssp ECSTTSSHHHHHHTHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999876
No 440
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.70 E-value=0.025 Score=37.98 Aligned_cols=17 Identities=35% Similarity=0.475 Sum_probs=14.9
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|.+||||||+++.|.+
T Consensus 10 ~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 10 TGGIGSGKSTVANAFAD 26 (218)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998864
No 441
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.67 E-value=0.022 Score=44.04 Aligned_cols=18 Identities=22% Similarity=0.490 Sum_probs=16.2
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|+.|+|||||++.+.+-
T Consensus 300 ~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 300 LGPNGIGKTTFARILVGE 317 (538)
T ss_dssp ECCTTSSHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999999864
No 442
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.66 E-value=0.017 Score=42.09 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=16.0
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||||+..++..
T Consensus 137 ~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 137 FGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999998764
No 443
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.65 E-value=0.022 Score=39.13 Aligned_cols=16 Identities=38% Similarity=0.360 Sum_probs=14.5
Q ss_pred CCCCCCChhhhHhhhh
Q psy1873 1 MGYRSVGKSSLSIQFV 16 (157)
Q Consensus 1 vG~~~~GKssli~~~~ 16 (157)
.|++||||||+.+.+.
T Consensus 15 ~G~~GsGKsTla~~la 30 (233)
T 3r20_A 15 DGPAGTGKSSVSRGLA 30 (233)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 4999999999999885
No 444
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.64 E-value=0.024 Score=40.94 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=15.8
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
.|++|+||||+++.+.+.
T Consensus 52 ~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 52 YGPPGTGKTSTIVALARE 69 (340)
T ss_dssp ECSSSSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999998764
No 445
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.54 E-value=0.025 Score=40.15 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=15.2
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++|+|||+|++.+.+
T Consensus 55 ~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 55 YGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp ECSSSSSHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHH
Confidence 49999999999999875
No 446
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.52 E-value=0.018 Score=38.00 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=15.4
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
.|.+||||||+.+.|.+.
T Consensus 14 ~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 14 TGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EECTTSCHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHC
Confidence 489999999999988653
No 447
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.45 E-value=0.026 Score=42.12 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=15.4
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|.+||||||+.+++..
T Consensus 264 ~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 264 VGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp ESCTTSSHHHHHHHHTG
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999999875
No 448
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.45 E-value=0.028 Score=39.62 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=15.2
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++|+|||++++.+..
T Consensus 56 ~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 56 IGPTGVGKTEIARRLAK 72 (310)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999865
No 449
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.44 E-value=0.03 Score=35.21 Aligned_cols=18 Identities=11% Similarity=0.028 Sum_probs=15.4
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
.|++|+|||++++.+...
T Consensus 30 ~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 30 YGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp ESSTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 499999999999988653
No 450
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.41 E-value=0.027 Score=40.90 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=15.7
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
.|++|+|||++++.+.+.
T Consensus 50 ~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 50 YGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CBCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999998753
No 451
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.40 E-value=0.028 Score=40.88 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=15.7
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
.|++|+|||+|++.+.+.
T Consensus 50 ~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 50 LGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999998754
No 452
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.40 E-value=0.023 Score=41.22 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=15.7
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
.|++|+|||+|++.+.+.
T Consensus 51 ~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 51 YGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp EECTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999998753
No 453
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.39 E-value=0.022 Score=44.40 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=15.4
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|+|||||++.+.+
T Consensus 375 vG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 375 LGETGSGKSTLMNLIPR 391 (587)
T ss_dssp ECSSSSSHHHHHHTTTT
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 69999999999998875
No 454
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.37 E-value=0.029 Score=39.08 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=15.7
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
.|++|+|||+++..+...
T Consensus 70 ~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 70 EGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHH
Confidence 399999999999998763
No 455
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.34 E-value=0.029 Score=38.93 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=14.6
Q ss_pred CCCCCChhhhHhhhhc
Q psy1873 2 GYRSVGKSSLSIQFVD 17 (157)
Q Consensus 2 G~~~~GKssli~~~~~ 17 (157)
|.+||||||+++.|.+
T Consensus 31 G~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 31 GNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CSTTSSHHHHHTTTGG
T ss_pred CCCCCCHHHHHHHHHH
Confidence 8999999999998865
No 456
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.30 E-value=0.03 Score=40.03 Aligned_cols=18 Identities=50% Similarity=0.746 Sum_probs=15.8
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
.|++|+|||+|++.+.+.
T Consensus 37 ~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 37 LGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCcCCHHHHHHHHHHH
Confidence 399999999999998754
No 457
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.25 E-value=0.03 Score=40.24 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=15.7
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
.|++|+|||++++.+.+.
T Consensus 64 ~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 64 YGPPGTGKTSTILALTKE 81 (353)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 399999999999998754
No 458
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.24 E-value=0.033 Score=37.45 Aligned_cols=16 Identities=19% Similarity=0.302 Sum_probs=13.9
Q ss_pred CCCCCChhhhHhhhhc
Q psy1873 2 GYRSVGKSSLSIQFVD 17 (157)
Q Consensus 2 G~~~~GKssli~~~~~ 17 (157)
|..||||||+++.+.+
T Consensus 9 G~dGsGKsTq~~~L~~ 24 (205)
T 4hlc_A 9 GPEGSGKTTVINEVYH 24 (205)
T ss_dssp CCTTSCHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHH
Confidence 8999999999988754
No 459
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.21 E-value=0.028 Score=44.05 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=16.2
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|+.|+|||||++.+.+.
T Consensus 388 ~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 388 VGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp ECCTTSSHHHHHHHHHTS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 699999999999999864
No 460
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.18 E-value=0.03 Score=37.46 Aligned_cols=16 Identities=38% Similarity=0.459 Sum_probs=14.2
Q ss_pred CCCCCCChhhhHhhhh
Q psy1873 1 MGYRSVGKSSLSIQFV 16 (157)
Q Consensus 1 vG~~~~GKssli~~~~ 16 (157)
+|+.|+|||||+..+.
T Consensus 29 ~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 29 IGQNGSGKSSLLDAIL 44 (203)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 5999999999998874
No 461
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.17 E-value=0.029 Score=43.33 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=16.3
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|+.|+|||||++.+.+.
T Consensus 318 ~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 318 VGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp ECCTTSSHHHHHHHHHTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999999864
No 462
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.16 E-value=0.031 Score=41.92 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=14.8
Q ss_pred CCCCCChhhhHhhhhc
Q psy1873 2 GYRSVGKSSLSIQFVD 17 (157)
Q Consensus 2 G~~~~GKssli~~~~~ 17 (157)
||||+|||+|+..+.+
T Consensus 213 GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 213 GPPGTGKTMLVKAVAN 228 (428)
T ss_dssp SCTTTTHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999999999874
No 463
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.09 E-value=0.028 Score=39.76 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=15.6
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
.|++|+|||++++.+.+.
T Consensus 53 ~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 53 LGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp ESCSSSSHHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHHH
Confidence 499999999999988753
No 464
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.09 E-value=0.03 Score=38.43 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=14.9
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|+|||||||+..++.+
T Consensus 14 ~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 14 LGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998854
No 465
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.08 E-value=0.03 Score=40.13 Aligned_cols=85 Identities=14% Similarity=-0.008 Sum_probs=45.9
Q ss_pred EEEEEEeCCCCccCcC-ch------hhh-----ccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCC
Q psy1873 43 YDLKLVDTAGQDEYSI-FP------AQY-----SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSC 110 (157)
Q Consensus 43 ~~~~i~D~~g~~~~~~-~~------~~~-----~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 110 (157)
+.+.+.|++|...... +. ... -..++.++++.|.+.. .+.+. ....+.+..
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~-~a~~~~~~~-------------- 249 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLV-QAKIFKEAV-------------- 249 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHH-HHHHHHHHS--------------
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHH-HHHHHHhcC--------------
Confidence 4578999999633221 10 001 1246888899887633 22222 222332221
Q ss_pred CCCCcEEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873 111 VSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS 151 (157)
Q Consensus 111 ~~~~p~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 151 (157)
...-+|.||.|... .. ..+.......++|+..++
T Consensus 250 ---~i~gvVlTk~D~~~--~g--G~~l~~~~~~~~Pi~~i~ 283 (306)
T 1vma_A 250 ---NVTGIILTKLDGTA--KG--GITLAIARELGIPIKFIG 283 (306)
T ss_dssp ---CCCEEEEECGGGCS--CT--THHHHHHHHHCCCEEEEE
T ss_pred ---CCCEEEEeCCCCcc--ch--HHHHHHHHHHCCCEEEEe
Confidence 22446679999532 22 236677778888766554
No 466
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.08 E-value=0.028 Score=39.78 Aligned_cols=17 Identities=18% Similarity=0.509 Sum_probs=14.5
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++|+|||++++.+.+
T Consensus 73 ~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 73 TGNPGTGKTTVALKMAG 89 (309)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999987654
No 467
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.03 E-value=0.034 Score=41.78 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=14.8
Q ss_pred CCCCCChhhhHhhhhc
Q psy1873 2 GYRSVGKSSLSIQFVD 17 (157)
Q Consensus 2 G~~~~GKssli~~~~~ 17 (157)
||||+|||+|+..+.+
T Consensus 222 GPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 222 GPPGTGKTLLARACAA 237 (434)
T ss_dssp SCTTSSHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHH
Confidence 9999999999999875
No 468
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.02 E-value=0.024 Score=40.39 Aligned_cols=86 Identities=19% Similarity=0.134 Sum_probs=45.9
Q ss_pred EEEEEEEeCCCCccCcC--chh--hhcc--CCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCc
Q psy1873 42 DYDLKLVDTAGQDEYSI--FPA--QYSM--DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP 115 (157)
Q Consensus 42 ~~~~~i~D~~g~~~~~~--~~~--~~~~--~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p 115 (157)
.+.+.|.||+|...... +.. ..+. ..+.++++.|.+.. .+.+.++...+. .. ..
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~----~l--------------~~ 241 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS----SV--------------PV 241 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS----SS--------------CC
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh----cC--------------CC
Confidence 35678999999765432 111 1222 35677888876632 233333322221 10 12
Q ss_pred EEEEEeCCCCCCCceecHHHHHHHHHHhCCcEEEec
Q psy1873 116 IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEAS 151 (157)
Q Consensus 116 ~~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S 151 (157)
.-+|.||.|.... ...+...+...++|+..++
T Consensus 242 ~giVltk~D~~~~----~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 242 NQYIFTKIDETTS----LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp CEEEEECTTTCSC----CHHHHHHHHTCSCCCSEEC
T ss_pred CEEEEeCCCcccc----hhHHHHHHHHHCcCEEEEE
Confidence 3456699997432 1245566677787654443
No 469
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.95 E-value=0.034 Score=39.96 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=15.3
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++|+|||+|++.+..
T Consensus 51 ~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 51 FGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp ESSSSSCHHHHHHHHHH
T ss_pred ECCCCccHHHHHHHHHH
Confidence 39999999999999875
No 470
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.94 E-value=0.038 Score=36.60 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=14.8
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++||||||+.+.+.+
T Consensus 8 ~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 8 DGPSASGKSSVARRVAA 24 (208)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 39999999999998854
No 471
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.94 E-value=0.026 Score=43.40 Aligned_cols=15 Identities=47% Similarity=0.680 Sum_probs=13.9
Q ss_pred CCCCCCChhhhHhhh
Q psy1873 1 MGYRSVGKSSLSIQF 15 (157)
Q Consensus 1 vG~~~~GKssli~~~ 15 (157)
+|++|+|||||++.|
T Consensus 45 ~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 45 SGTSGTGKTLFSIQF 59 (525)
T ss_dssp EESTTSSHHHHHHHH
T ss_pred EcCCCCCHHHHHHHH
Confidence 599999999999995
No 472
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.86 E-value=0.027 Score=35.35 Aligned_cols=18 Identities=11% Similarity=0.069 Sum_probs=15.2
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
.|++|+|||++++.+...
T Consensus 33 ~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 33 TGEAGSPFETVARYFHKN 50 (143)
T ss_dssp EEETTCCHHHHHGGGCCT
T ss_pred ECCCCccHHHHHHHHHHh
Confidence 389999999999888653
No 473
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.82 E-value=0.028 Score=41.84 Aligned_cols=16 Identities=31% Similarity=0.382 Sum_probs=14.4
Q ss_pred CCCCCCChhhhHhhhh
Q psy1873 1 MGYRSVGKSSLSIQFV 16 (157)
Q Consensus 1 vG~~~~GKssli~~~~ 16 (157)
+|++|+|||||+..++
T Consensus 184 ~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 184 FGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred EcCCCCChHHHHHHHH
Confidence 4899999999999875
No 474
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.82 E-value=0.041 Score=37.96 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=14.6
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++||||||+.+.|..
T Consensus 28 ~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 28 SGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 39999999999988754
No 475
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.79 E-value=0.035 Score=43.57 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=16.2
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|+.|+|||||++.+.+-
T Consensus 384 iG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 384 MGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp ESCTTSSHHHHHHHHHTS
T ss_pred ECCCCCcHHHHHHHHhcC
Confidence 599999999999999764
No 476
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.76 E-value=0.042 Score=40.36 Aligned_cols=18 Identities=28% Similarity=0.421 Sum_probs=15.7
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
.|++|+|||+|++.+.+.
T Consensus 58 ~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 58 IGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp TTCCSSSHHHHHHHHHHH
T ss_pred cCcCCCCHHHHHHHHHHH
Confidence 499999999999998753
No 477
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.75 E-value=0.032 Score=39.99 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=15.5
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
.|++|+|||+|++.+.+.
T Consensus 36 ~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 36 LGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 389999999999998753
No 478
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.75 E-value=0.039 Score=39.56 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=15.1
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++|+|||+|++.+..
T Consensus 57 ~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 57 YGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp ECSSSSCHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHH
Confidence 39999999999999865
No 479
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.74 E-value=0.042 Score=37.16 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=14.4
Q ss_pred CCCCCChhhhHhhhhc
Q psy1873 2 GYRSVGKSSLSIQFVD 17 (157)
Q Consensus 2 G~~~~GKssli~~~~~ 17 (157)
|++||||||+++.+.+
T Consensus 13 G~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 13 GPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CSTTSSHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHH
Confidence 9999999999999854
No 480
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.73 E-value=0.032 Score=38.19 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=11.6
Q ss_pred CCCCCChhhhHhhhhc
Q psy1873 2 GYRSVGKSSLSIQFVD 17 (157)
Q Consensus 2 G~~~~GKssli~~~~~ 17 (157)
|++||||||+++.+.+
T Consensus 32 G~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 32 GIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCC---CHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999999999864
No 481
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=92.72 E-value=0.032 Score=42.29 Aligned_cols=18 Identities=22% Similarity=0.444 Sum_probs=15.6
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||++++.+...
T Consensus 207 ~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 207 IGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp ESCTTTTTHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999988653
No 482
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.69 E-value=0.041 Score=41.42 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=14.8
Q ss_pred CCCCCChhhhHhhhhc
Q psy1873 2 GYRSVGKSSLSIQFVD 17 (157)
Q Consensus 2 G~~~~GKssli~~~~~ 17 (157)
||||+|||+|+..+..
T Consensus 222 GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 222 GPPGTGKTLLAKAVAA 237 (437)
T ss_dssp SCTTSSHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHH
Confidence 9999999999999864
No 483
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.69 E-value=0.85 Score=30.34 Aligned_cols=86 Identities=9% Similarity=0.035 Sum_probs=54.6
Q ss_pred EEEEEEEeCCCC-ccCcCchhhhccCCCEEEEEEECCChhhHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCCcEEEEE
Q psy1873 42 DYDLKLVDTAGQ-DEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120 (157)
Q Consensus 42 ~~~~~i~D~~g~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~vv~ 120 (157)
.+.+.+.|+++. .. ......+..+|.+|++...+ ..++..+...+..+.... . .++.+|.
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~-------------~~~~vv~ 127 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---N-------------NRFRILL 127 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---S-------------SSEEEEE
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---C-------------CCEEEEE
Confidence 467789999876 32 23445667889988887754 566677766665554422 1 6788999
Q ss_pred eCCCCCCCceecHHHHHHHHHHhCCcEE
Q psy1873 121 NKKDLHMERMISYDEGKRLAESWKAGFV 148 (157)
Q Consensus 121 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 148 (157)
|+.|.... .. ..+..++.++++.+++
T Consensus 128 N~~~~~~~-~~-~~~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 128 TIIPPYPS-KD-GDEARQLLTTAGLPLF 153 (209)
T ss_dssp CSBCCTTS-CH-HHHHHHHHHHTTCCBC
T ss_pred EecCCccc-hH-HHHHHHHHHHcCCchh
Confidence 99986330 11 3445555555676544
No 484
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.64 E-value=0.033 Score=40.37 Aligned_cols=17 Identities=18% Similarity=0.474 Sum_probs=15.1
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++|+|||++++.+..
T Consensus 76 ~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 76 AGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 39999999999999864
No 485
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.63 E-value=0.027 Score=39.93 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=11.5
Q ss_pred CCCCCChhhhHhhhhc
Q psy1873 2 GYRSVGKSSLSIQFVD 17 (157)
Q Consensus 2 G~~~~GKssli~~~~~ 17 (157)
|++||||||+.+.|..
T Consensus 12 G~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 12 GSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCC---CCTHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 8999999999998864
No 486
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=92.58 E-value=0.039 Score=45.57 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=17.4
Q ss_pred CCCCCCChhhhHhhhhcccc
Q psy1873 1 MGYRSVGKSSLSIQFVDGQF 20 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~~~ 20 (157)
+|+.|+|||||++.+.++..
T Consensus 467 iGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 467 CGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp ECSTTSSHHHHHHHHHHTCS
T ss_pred ECCCCCCHHHHHHHHhCCCc
Confidence 69999999999999986543
No 487
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.54 E-value=0.045 Score=39.14 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=15.0
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++|+|||+|+..+..
T Consensus 158 ~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 158 YGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 39999999999988865
No 488
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.51 E-value=0.043 Score=36.88 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=15.9
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
+|++|+|||+|...|...
T Consensus 40 ~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 40 TGDSGVGKSETALELVQR 57 (205)
T ss_dssp ECCCTTTTHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 499999999999998754
No 489
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.49 E-value=0.048 Score=36.25 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=14.8
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|.+||||||+.+.|..
T Consensus 18 tG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 18 TGKIGTGKSTVCEILKN 34 (192)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999998864
No 490
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.43 E-value=0.045 Score=41.15 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=15.1
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
.|++|+|||+|++.+.+
T Consensus 136 ~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 136 YGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp ECSSSSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998865
No 491
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.40 E-value=0.046 Score=40.68 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=14.8
Q ss_pred CCCCCChhhhHhhhhc
Q psy1873 2 GYRSVGKSSLSIQFVD 17 (157)
Q Consensus 2 G~~~~GKssli~~~~~ 17 (157)
||||+|||.|+..+.+
T Consensus 189 GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 189 GPPGTGKTLLARAVAH 204 (405)
T ss_dssp SCSSSSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999999999864
No 492
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.39 E-value=0.038 Score=42.72 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=15.1
Q ss_pred CCCCCCChhhhHhhhhc
Q psy1873 1 MGYRSVGKSSLSIQFVD 17 (157)
Q Consensus 1 vG~~~~GKssli~~~~~ 17 (157)
+|++|+|||+|++.+.+
T Consensus 114 ~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 114 AGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp ESSSSSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999998864
No 493
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=92.37 E-value=0.036 Score=43.87 Aligned_cols=15 Identities=33% Similarity=0.437 Sum_probs=13.4
Q ss_pred CCCCCCChhhhHhhh
Q psy1873 1 MGYRSVGKSSLSIQF 15 (157)
Q Consensus 1 vG~~~~GKssli~~~ 15 (157)
+|++|||||||++.+
T Consensus 354 iGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 354 TGVSGSGKSTLVNEV 368 (670)
T ss_dssp ECSTTSSHHHHHTTT
T ss_pred EeeCCCCHHHHHHHH
Confidence 699999999999764
No 494
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.34 E-value=0.054 Score=36.85 Aligned_cols=15 Identities=33% Similarity=0.682 Sum_probs=13.7
Q ss_pred CCCCCChhhhHhhhh
Q psy1873 2 GYRSVGKSSLSIQFV 16 (157)
Q Consensus 2 G~~~~GKssli~~~~ 16 (157)
|+||+|||+|+..++
T Consensus 37 G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 37 GGTGTGKTTFAAQFI 51 (251)
T ss_dssp CCTTSSHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHH
Confidence 899999999998875
No 495
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.28 E-value=0.042 Score=37.60 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=14.4
Q ss_pred CCCCCChhhhHhhhhc
Q psy1873 2 GYRSVGKSSLSIQFVD 17 (157)
Q Consensus 2 G~~~~GKssli~~~~~ 17 (157)
|..||||||+++.+..
T Consensus 9 G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 9 GNIAVGKSTFVKLLTK 24 (241)
T ss_dssp ECTTSSHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHH
Confidence 8999999999998864
No 496
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.27 E-value=0.053 Score=36.15 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=13.8
Q ss_pred CCCCCChhhhHhhhhc
Q psy1873 2 GYRSVGKSSLSIQFVD 17 (157)
Q Consensus 2 G~~~~GKssli~~~~~ 17 (157)
|..||||||.++.+.+
T Consensus 7 G~DGsGKsTq~~~L~~ 22 (197)
T 3hjn_A 7 GIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp CSTTSSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 8999999999888753
No 497
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.26 E-value=0.041 Score=40.04 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=15.5
Q ss_pred CCCCCCChhhhHhhhhcc
Q psy1873 1 MGYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 1 vG~~~~GKssli~~~~~~ 18 (157)
.|++|+|||+|++.+.+.
T Consensus 51 ~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 51 LGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp EECTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 399999999999998753
No 498
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=92.19 E-value=0.033 Score=40.11 Aligned_cols=17 Identities=18% Similarity=0.073 Sum_probs=15.3
Q ss_pred CCCCCChhhhHhhhhcc
Q psy1873 2 GYRSVGKSSLSIQFVDG 18 (157)
Q Consensus 2 G~~~~GKssli~~~~~~ 18 (157)
|+||+|||++++.++..
T Consensus 52 GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 52 NADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CCCSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999998753
No 499
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=92.18 E-value=0.048 Score=39.45 Aligned_cols=16 Identities=38% Similarity=0.459 Sum_probs=14.3
Q ss_pred CCCCCCChhhhHhhhh
Q psy1873 1 MGYRSVGKSSLSIQFV 16 (157)
Q Consensus 1 vG~~~~GKssli~~~~ 16 (157)
+|+.|+|||+|+..++
T Consensus 29 ~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 29 IGQNGSGKSSLLDAIL 44 (339)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999864
No 500
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.13 E-value=0.047 Score=35.97 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=13.3
Q ss_pred CCCCCCChhhhHhhhh
Q psy1873 1 MGYRSVGKSSLSIQFV 16 (157)
Q Consensus 1 vG~~~~GKssli~~~~ 16 (157)
.|++|+||||++.++.
T Consensus 9 ~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 9 TGPMYSGKTTELLSFV 24 (184)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 3899999999986654
Done!