RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1873
(157 letters)
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 208 bits (531), Expect = 9e-70
Identities = 79/154 (51%), Positives = 106/154 (68%), Gaps = 13/154 (8%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+GYR VGK+SL+ QFV+G+F + YDPT+ENT+ K + ++ L LVDTAGQDEYSI P
Sbjct: 30 LGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILP 89
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
+ + +HGYVLVYS+TS SF+V++ LY KL + GK + VP+VLVG
Sbjct: 90 YSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGK-------------TRVPVVLVG 136
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
NK DL ER + EGK+LAESW A F+E+SA++
Sbjct: 137 NKADLSPEREVQAVEGKKLAESWGATFMESSARE 170
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 207 bits (529), Expect = 1e-69
Identities = 103/154 (66%), Positives = 125/154 (81%), Gaps = 13/154 (8%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+GYRSVGKSSL+IQFV+GQFVDSYDPTIENTF K +N Q+Y L+LVDTAGQDEYSIFP
Sbjct: 12 LGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP 71
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
YS+DI+GY+LVYS+TS KSFEV+++++ KLLDM GK +PI+LVG
Sbjct: 72 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-------------VQIPIMLVG 118
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
NKKDLHMER+ISY+EGK LAESW A F+E+SAK+
Sbjct: 119 NKKDLHMERVISYEEGKALAESWNAAFLESSAKE 152
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 206 bits (526), Expect = 2e-69
Identities = 52/154 (33%), Positives = 84/154 (54%), Gaps = 12/154 (7%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
G VGKSSL ++FV G F +SY PT+E+T+ + + L++ DT G ++
Sbjct: 9 FGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQ 68
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
H ++LVYSITS +S E ++ +Y+++ ++ G +++ +PI+LVG
Sbjct: 69 RLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES------------IPIMLVG 116
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
NK D R + E + LA +WK F+E SAK
Sbjct: 117 NKCDESPSREVQSSEAEALARTWKCAFMETSAKL 150
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 204 bits (522), Expect = 8e-69
Identities = 55/154 (35%), Positives = 92/154 (59%), Gaps = 13/154 (8%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G VGKS+L++QFV G F++ YDPTIE+ + K +++ L+++DTAG ++++
Sbjct: 9 LGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMR 68
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
Y + G++LVYS+ + +SF+ ++ + D+++ + VP++LVG
Sbjct: 69 DLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-------------EKVPVILVG 115
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
NK DL ER +S EG+ LAE W F+E SAK
Sbjct: 116 NKVDLESEREVSSSEGRALAEEWGCPFMETSAKS 149
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 204 bits (521), Expect = 1e-68
Identities = 49/154 (31%), Positives = 85/154 (55%), Gaps = 13/154 (8%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G VGKS+L++QF+ +FV+ Y+PT +++ K ++ ++ + ++DTAGQ++Y+
Sbjct: 10 VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIR 69
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
Y G++ V+SIT +SF +++L + +VP +LVG
Sbjct: 70 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-------------ENVPFLLVG 116
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
NK DL +R +S +E K A+ W +VE SAK
Sbjct: 117 NKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKT 150
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 203 bits (518), Expect = 7e-68
Identities = 50/154 (32%), Positives = 85/154 (55%), Gaps = 13/154 (8%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G VGKS+L++QF+ +FV+ Y+PT +++ K ++ ++ + ++DTAGQ++Y+
Sbjct: 24 VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIR 83
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
Y G++ V+SIT +SF +++L + +VP +LVG
Sbjct: 84 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-------------ENVPFLLVG 130
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
NK DL +R +S +E K AE W +VE SAK
Sbjct: 131 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKT 164
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 202 bits (516), Expect = 2e-67
Identities = 50/154 (32%), Positives = 85/154 (55%), Gaps = 13/154 (8%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G VGKS+L++QF+ +FV+ Y+PT +++ K ++ ++ + ++DTAGQ++Y+
Sbjct: 20 VGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIR 79
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
Y G++ V+SIT +SF +++L + +VP +LVG
Sbjct: 80 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-------------ENVPFLLVG 126
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
NK DL +R +S +E K AE W +VE SAK
Sbjct: 127 NKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKT 160
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 201 bits (514), Expect = 2e-67
Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 13/154 (8%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G VGKS+L+IQF+ FV YDPTIE+++ K ++ L ++DTAGQ+E+
Sbjct: 15 VGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMR 74
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
QY HG++LV++I +SF V L+ ++L + + P+VLVG
Sbjct: 75 EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDR-------------DDFPVVLVG 121
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
NK DL +R + E S + EASAK
Sbjct: 122 NKADLESQRQVPRSEASAFGASHHVAYFEASAKL 155
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 201 bits (513), Expect = 3e-67
Identities = 59/154 (38%), Positives = 89/154 (57%), Gaps = 13/154 (8%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G VGKS+L+IQF FVD YDPTIE++++K T ++NQ L ++DTAGQ+E+S
Sbjct: 24 VGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMR 83
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
QY G+++VYS+T SFE V + +L + + S P++LV
Sbjct: 84 EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-------------ESFPMILVA 130
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
NK DL R ++ D+GK +A + ++E SAK
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKD 164
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 199 bits (509), Expect = 8e-67
Identities = 57/155 (36%), Positives = 92/155 (59%), Gaps = 14/155 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G VGKS+L++QFV G FV+ YDPTIE+++ K ++ Q L+++DTAG ++++
Sbjct: 9 LGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMR 68
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
Y + G+ LVYSIT+ +F +Q L +++L + VP++LVG
Sbjct: 69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-------------EDVPMILVG 115
Query: 121 NKKDLHMERMISYDEGKRLAESW-KAGFVEASAKQ 154
NK DL ER++ ++G+ LA W F+E+SAK
Sbjct: 116 NKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKS 150
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 199 bits (509), Expect = 2e-66
Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 13/154 (8%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
G VGKSSL ++FV G F D+Y PTIE+T+ + + L++ DT G ++
Sbjct: 14 FGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQ 73
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
H ++LV+S+TS +S E + +Y ++ + G +++ +P++LVG
Sbjct: 74 RLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVED------------IPVMLVG 121
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
NK D +R + E + +A+ WK F+E SAK
Sbjct: 122 NKCDET-QREVDTREAQAVAQEWKCAFMETSAKM 154
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 198 bits (507), Expect = 3e-66
Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 12/155 (7%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G R GKS+L+++F+ +F+ YDP +E+T+ +++Q L+++DTA D
Sbjct: 27 LGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNCE 86
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
+Y H +++VYS+ S +SF+ + L + Q S+P +L+G
Sbjct: 87 -RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQ-----------RSIPALLLG 134
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
NK D+ R ++ EG LA + F E SA D
Sbjct: 135 NKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLD 169
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 197 bits (504), Expect = 8e-66
Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 14/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G VGKS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAGQ+EYS
Sbjct: 10 VGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 69
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
QY G++ V++I + KSFE + +++ + VP+VLVG
Sbjct: 70 DQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS-------------EDVPMVLVG 116
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
NK DL R + + + LA S+ F+E SAK
Sbjct: 117 NKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKT 149
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 197 bits (502), Expect = 2e-65
Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 14/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G VGKS+L+IQ + FVD YDPTIE+++ K ++ + L ++DTAGQ+EYS
Sbjct: 27 VGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 86
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
QY G++ V++I + KSF + + +++ + VP+VLVG
Sbjct: 87 DQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDS-------------DDVPMVLVG 133
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
NK DL R + + LA+S+ F+E SAK
Sbjct: 134 NKCDLP-TRTVDTKQAHELAKSYGIPFIETSAKT 166
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 195 bits (499), Expect = 3e-65
Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 14/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G VGKS+L+IQ + FVD DPTIE+++ K ++ + L ++DTAGQ+EYS
Sbjct: 9 VGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR 68
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
QY G++ V++I + KSFE + +++ + VP+VLVG
Sbjct: 69 DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-------------DDVPMVLVG 115
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
NK DL R + + + LA S+ ++E SAK
Sbjct: 116 NKSDL-AARTVESRQAQDLARSYGIPYIETSAKT 148
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 195 bits (499), Expect = 6e-65
Identities = 51/155 (32%), Positives = 82/155 (52%), Gaps = 14/155 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
G VGKS+L ++F+ +F+ YDPT+E+T+ ++++ ++++DTAGQ++ I
Sbjct: 34 FGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDT-IQR 92
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
+ G+VLVY IT SFE V L + L ++ +V ++LVG
Sbjct: 93 EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP-------------KNVTLILVG 139
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
NK DL R +S +EG++LA F E SA
Sbjct: 140 NKADLDHSRQVSTEEGEKLATELACAFYECSACTG 174
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 186 bits (475), Expect = 1e-61
Identities = 47/156 (30%), Positives = 69/156 (44%), Gaps = 15/156 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQD--EYSI 58
+G VGK+SL+ F Q D ++ E+ + +T ++ +D L +VDT + + S
Sbjct: 10 LGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSW 69
Query: 59 FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL 118
YV+VYSI SFE L +L VPI+L
Sbjct: 70 SQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQA-------------DHVPIIL 116
Query: 119 VGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
VGNK DL R +S +EG+ A + F+E SA
Sbjct: 117 VGNKADLARCREVSVEEGRACAVVFDCKFIETSATL 152
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 186 bits (474), Expect = 1e-61
Identities = 45/154 (29%), Positives = 65/154 (42%), Gaps = 14/154 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G VGKS+L+ F G +T+ ++ ++ ++ L + D QD P
Sbjct: 8 LGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLP 66
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
YV+VYS+T SFE L +L VPI+LVG
Sbjct: 67 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQT-------------DDVPIILVG 113
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
NK DL R +S DEG+ A + F+E SA
Sbjct: 114 NKSDLVRSREVSVDEGRACAVVFDCKFIETSAAL 147
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 167 bits (426), Expect = 6e-54
Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 22/158 (13%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G S GKS+L +++ G +V P F K ++ Q Y L + D G E
Sbjct: 26 VGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPEL---- 80
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
Q++ + V V+S+ SF+ V + +L S VP+VLVG
Sbjct: 81 -QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNA-------------SEVPMVLVG 126
Query: 121 NKKDLHME--RMISYDEGKRLAESWK-AGFVEASAKQD 155
+ + R+I ++L+ K + E A
Sbjct: 127 TQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYG 164
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 154 bits (391), Expect = 2e-48
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 15/155 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTI-ENTFVKTTRMNNQDYDLKLVDTAGQDEY-SI 58
+G VGKS+L+ F Q +++P E+T+ + ++ ++ L + D Q +
Sbjct: 29 VGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGW 88
Query: 59 FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL 118
+++V+S+T +SF V +L +P++L
Sbjct: 89 LRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-------------HDLPVIL 135
Query: 119 VGNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
VGNK DL R +S +EG+ LA + +E SA
Sbjct: 136 VGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAA 170
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 151 bits (383), Expect = 1e-47
Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 15/155 (9%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPT-IENTFVKTTRMNNQDYDLKLVDTAGQDEYS-I 58
+G VGKS+L+ F Q +++ E+T+ + ++ ++ L + D Q +
Sbjct: 8 VGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW 67
Query: 59 FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL 118
+++V+S+T +SF V +L +P++L
Sbjct: 68 LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-------------HDLPVIL 114
Query: 119 VGNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
VGNK DL R +S +EG+ LA + +E SA
Sbjct: 115 VGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAA 149
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 149 bits (377), Expect = 3e-46
Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 20/159 (12%)
Query: 1 MGYRSVGKSSLSIQFVDGQ--FVDSYDPTIENTFVKTTRMNNQDYDLKLVD---TAGQDE 55
+G + VGKS+L+ F + E+T+ +T ++ + + L+D G++E
Sbjct: 43 IGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENE 102
Query: 56 YSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP 115
+ Y++VYSIT SFE L +L +P
Sbjct: 103 WLH--DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-------------EDIP 147
Query: 116 IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
I+LVGNK DL R +S EG+ A + F+E SA
Sbjct: 148 IILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAV 186
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 132 bits (335), Expect = 4e-40
Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 20/159 (12%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYD--PTIENTFVKTTRMNNQDYDLKLV---DTAGQDE 55
+G + VGKS+L+ F D E+T+ +T ++ + + L+ + G++E
Sbjct: 12 IGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENE 71
Query: 56 YSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVP 115
+ Y++VYSIT SFE L +L +P
Sbjct: 72 WLH--DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-------------EDIP 116
Query: 116 IVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
I+LVGNK DL R +S EG+ A + F+E SA
Sbjct: 117 IILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAV 155
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 130 bits (329), Expect = 2e-39
Identities = 28/156 (17%), Positives = 63/156 (40%), Gaps = 16/156 (10%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFP 60
+G GKSSL +F+ G + + T + K ++ Q + + + + AG +
Sbjct: 13 LGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA---- 67
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
++S + V+S+ SF+ V L+ +L + G+ + ++ +V
Sbjct: 68 -KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGG---------LALALVGTQ 117
Query: 121 NKKDLHMERMISYDEGKRL-AESWKAGFVEASAKQD 155
++ R++ + L A+ + + E A
Sbjct: 118 DRISASSPRVVGDARARALXADMKRCSYYETXATYG 153
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 113 bits (285), Expect = 2e-32
Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 23/159 (14%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYS 64
+VGK+ + I + +F Y PT+ + F ++ Q +L L DTAGQ++YS
Sbjct: 19 AVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSY 78
Query: 65 MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKD 124
+VL +S+ S S+E V + +++ + +VPIVLVG K D
Sbjct: 79 RGADIFVLAFSLISKASYENVLKKW------MPELRRFA--------PNVPIVLVGTKLD 124
Query: 125 L--------HMERMISYDEGKRLAESWKA-GFVEASAKQ 154
L +I+ +G+ L + A ++E S+K
Sbjct: 125 LRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT 163
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 112 bits (283), Expect = 4e-32
Identities = 54/154 (35%), Positives = 79/154 (51%), Gaps = 17/154 (11%)
Query: 2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
G +SVGK+SL +F+ F ++Y TI F KT + ++ L+L DTAG + + S+
Sbjct: 23 GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLI 82
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
P+ D V+VY IT+ SF+ D + G S V I+LV
Sbjct: 83 PSYIR-DSTVAVVVYDITNVNSFQQTTKWIDDVRTERG--------------SDVIIMLV 127
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL +R +S +EG+R A+ F+E SAK
Sbjct: 128 GNKTDLADKRQVSIEEGERKAKELNVMFIETSAK 161
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 111 bits (280), Expect = 5e-32
Identities = 49/154 (31%), Positives = 73/154 (47%), Gaps = 18/154 (11%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
+VGKSS+ ++ G F Y TI F + ++N++D L L DTAGQ+E+ +I A
Sbjct: 15 AVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAY 74
Query: 63 YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
Y VLV+S T +SFE + +K++ +P LV NK
Sbjct: 75 YR-GAQACVLVFSTTDRESFEAISSWREKVVAEV---------------GDIPTALVQNK 118
Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
DL + I +E + LA+ K F S K+D
Sbjct: 119 IDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDL 152
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 111 bits (279), Expect = 7e-32
Identities = 55/154 (35%), Positives = 79/154 (51%), Gaps = 17/154 (11%)
Query: 2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
G +SVGK+SL +F+ F ++Y TI F KT + ++ L+L DTAGQ+ + S+
Sbjct: 21 GEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI 80
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
P+ D V+VY IT+ SF D + G S V I+LV
Sbjct: 81 PSYIR-DSTVAVVVYDITNTNSFHQTSKWIDDVRTERG--------------SDVIIMLV 125
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL +R +S +EG+R A+ F+E SAK
Sbjct: 126 GNKTDLSDKRQVSTEEGERKAKELNVMFIETSAK 159
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 110 bits (277), Expect = 1e-31
Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 17/155 (10%)
Query: 2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
G VGK+SL +++ + +F D + T+ +F K + + +L + DTAGQ+ + ++
Sbjct: 13 GEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALG 72
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
P Y D +G +LVY IT SF+ V+ +L M G + + + +V
Sbjct: 73 PIYYR-DSNGAILVYDITDEDSFQKVKNWVKELRKMLG--------------NEICLCIV 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
GNK DL ER +S E + AES A SAKQ
Sbjct: 118 GNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQ 152
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 109 bits (274), Expect = 3e-31
Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 17/154 (11%)
Query: 2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
G VGKSS+ +FV+ F + +PTI +F KT + N+ + + DTAG + + ++
Sbjct: 13 GDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALA 72
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
P Y ++VY IT ++F ++ +L S+ + +
Sbjct: 73 PMYYR-GSAAAIIVYDITKEETFSTLKNWVRELRQHGP--------------PSIVVAIA 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL R + + K A+S A FVE SAK
Sbjct: 118 GNKCDLTDVREVMERDAKDYADSIHAIFVETSAK 151
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 109 bits (275), Expect = 5e-31
Identities = 48/155 (30%), Positives = 69/155 (44%), Gaps = 17/155 (10%)
Query: 2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
G VGKSS+ +FV F + PTI +F KT N+ + + DTAGQ+ + S+
Sbjct: 30 GDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLA 89
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
P Y V+VY IT SF ++ +L + ++ + +
Sbjct: 90 PMYYR-GSAAAVIVYDITKQDSFYTLKKWVKELKEHGP--------------ENIVMAIA 134
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
GNK DL R + + K AES A VE SAK
Sbjct: 135 GNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKN 169
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 108 bits (273), Expect = 5e-31
Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 17/154 (11%)
Query: 2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
G +VGKSSL ++FV GQF + + TI F +T +++ ++ DTAGQ+ Y S+
Sbjct: 13 GESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLA 72
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
P Y ++VY IT+ +SF + +L ++ I L
Sbjct: 73 PMYYR-GAQAAIVVYDITNEESFARAKNWVKELQRQAS--------------PNIVIALS 117
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL +R + + E + A+ F+E SAK
Sbjct: 118 GNKADLANKRAVDFQEAQSYADDNSLLFMETSAK 151
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 107 bits (270), Expect = 2e-30
Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 17/154 (11%)
Query: 2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
G GKSSL ++FV QFV+ + TI F +T +N+ ++ DTAGQ+ Y S+
Sbjct: 19 GDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA 78
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
P Y ++V+ +T+ SFE + +L ++ + L
Sbjct: 79 PMYYR-GAAAAIIVFDVTNQASFERAKKWVQELQAQGN--------------PNMVMALA 123
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL R ++ ++ + A+ F+E SAK
Sbjct: 124 GNKSDLLDARKVTAEDAQTYAQENGLFFMETSAK 157
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 105 bits (264), Expect = 2e-29
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 19/153 (12%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQY 63
+VGK+ L + F G+ +Y PT+ F + N+++ L L DTAGQ+EY + P Y
Sbjct: 33 AVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSY 92
Query: 64 SMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKK 123
+ D +L +++ + SF+ + + + VLVG K
Sbjct: 93 A-DSDVVLLCFAVNNRTSFDNISTKW---------EPEIKHYID-----TAKTVLVGLKV 137
Query: 124 DL--HMERMISYDEGKRLAESWKA-GFVEASAK 153
DL ++ EG L + ++EAS+
Sbjct: 138 DLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSV 170
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 103 bits (260), Expect = 5e-29
Identities = 41/156 (26%), Positives = 64/156 (41%), Gaps = 17/156 (10%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLV--DTAGQDEY-SIFP 60
+ GK+SL+ F F Y TI F ++ + ++ L D GQ +
Sbjct: 16 ASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGN-LNVTLQIWDIGGQTIGGKMLD 74
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
G +LVY IT+++SFE ++ D ++ S +S T + + LVG
Sbjct: 75 KYIY-GAQGVLLVYDITNYQSFENLE-------DWYTVVKKVSEESETQPL----VALVG 122
Query: 121 NKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
NK DL R I ++ R + SAK D
Sbjct: 123 NKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGD 158
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 103 bits (259), Expect = 6e-29
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 17/151 (11%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
VGKS L QF + +F+ TI F + ++ Q L++ DTAGQ+ + ++ +
Sbjct: 25 GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSY 84
Query: 63 YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
Y G ++VY IT ++ + ++T + I+L+GNK
Sbjct: 85 YR-GAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--------------NTVIILIGNK 129
Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAK 153
DL +R ++Y+E K+ AE F+EASAK
Sbjct: 130 ADLEAQRDVTYEEAKQFAEENGLLFLEASAK 160
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 103 bits (259), Expect = 1e-28
Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 17/154 (11%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
VGKSSL ++F D F TI F VKT ++ L + DTAGQ+ + ++ P+
Sbjct: 25 GVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSY 84
Query: 63 YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
Y G +LVY +T +F + ++L + + + +LVGNK
Sbjct: 85 YR-GAQGVILVYDVTRRDTFVKLDNWLNELETYCTR-------------NDIVNMLVGNK 130
Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
D R + +EG + A F+EASAK D
Sbjct: 131 IDKE-NREVDRNEGLKFARKHSMLFIEASAKTCD 163
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 103 bits (258), Expect = 2e-28
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 17/151 (11%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
GKS L QF++ +F + TI F + + + L++ DTAGQ+ + S+ +
Sbjct: 35 GTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSY 94
Query: 63 YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
Y G +LVY ITS +++ + + ++ ++L GNK
Sbjct: 95 YR-GAAGALLVYDITSRETYNSLAAWLTDARTL--------------ASPNIVVILCGNK 139
Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAK 153
KDL ER +++ E R A+ + F+E SA
Sbjct: 140 KDLDPEREVTFLEASRFAQENELMFLETSAL 170
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 103 bits (258), Expect = 2e-28
Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 17/154 (11%)
Query: 2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
G VGKS L ++F D + + Y TI F +KT ++ + L++ DTAGQ+ + +I
Sbjct: 15 GNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT 74
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
+ Y HG ++VY +T +SF V++ ++ S+V +LV
Sbjct: 75 SSYYR-GSHGIIIVYDVTDQESFNGVKMWLQEIDRY--------------ATSTVLKLLV 119
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
GNK DL +R++ YD K A++ K F+E SA
Sbjct: 120 GNKCDLKDKRVVEYDVAKEFADANKMPFLETSAL 153
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 102 bits (257), Expect = 2e-28
Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 17/156 (10%)
Query: 2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
G VGKS L ++F D + +SY TI F ++T ++ + L++ DTAGQ+ + +I
Sbjct: 23 GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 82
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
+ Y HG ++VY +T +SF V+ ++ +V +LV
Sbjct: 83 SSYYR-GAHGIIVVYDVTDQESFNNVKQWLQEIDRY--------------ASENVNKLLV 127
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
GNK DL ++++ Y K A+S F+E SAK
Sbjct: 128 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNA 163
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 102 bits (256), Expect = 2e-28
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 17/151 (11%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
GKS L QF++ +F D + TI F K + + L++ DTAGQ+ + S+ +
Sbjct: 20 GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSY 79
Query: 63 YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
Y G +LVY ITS +++ + + + ++ I+L GNK
Sbjct: 80 YR-GAAGALLVYDITSRETYNALTNWLTDARMLASQ--------------NIVIILCGNK 124
Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAK 153
KDL +R +++ E R A+ + F+E SA
Sbjct: 125 KDLDADREVTFLEASRFAQENELMFLETSAL 155
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 102 bits (257), Expect = 2e-28
Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 17/156 (10%)
Query: 2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
G VGKS L ++F D + +SY TI F ++T ++ + L++ DTAGQ+ + +I
Sbjct: 40 GDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT 99
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
+ Y HG ++VY +T +SF V+ ++ + +V +LV
Sbjct: 100 SSYYR-GAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--------------NVNKLLV 144
Query: 120 GNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
GNK DL ++++ Y K A+S F+E SAK
Sbjct: 145 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNA 180
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 102 bits (257), Expect = 3e-28
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 17/154 (11%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
VGK+ L +F G F TI F +KT +N + L++ DTAGQ+ + SI +
Sbjct: 36 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSY 95
Query: 63 YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
Y + +L Y IT +SF + ++ + V VLVGNK
Sbjct: 96 YR-SANALILTYDITCEESFRCLPEWLREIEQY--------------ASNKVITVLVGNK 140
Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
DL R +S + +E+ ++E SAK+ D
Sbjct: 141 IDLAERREVSQQRAEEFSEAQDMYYLETSAKESD 174
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 102 bits (256), Expect = 3e-28
Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 17/154 (11%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY--SIFPA 61
+VGK+ L+ +F G+F D + TI F + ++ + ++L DTAGQ+ + S+
Sbjct: 30 NVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQH 89
Query: 62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN 121
Y ++H V VY +T+ SF + ++ + +P +LVGN
Sbjct: 90 YYR-NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLA-------------NDIPRILVGN 135
Query: 122 KKDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
K DL + D ++ A++ E SAK
Sbjct: 136 KCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNP 169
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 102 bits (256), Expect = 4e-28
Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 18/152 (11%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLV--DTAGQDEY-SIFPA 61
VGK++ + +DG+F +Y+ T+ T +++Q +K DTAGQ++ +
Sbjct: 21 GVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDV 80
Query: 62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN 121
Y + G +L + +TS + + + + + + PIV+ N
Sbjct: 81 YY-IGASGAILFFDVTSRITCQNLARWVKEFQAV--------------VGNEAPIVVCAN 125
Query: 122 KKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
K D+ + IS + + + E SAK
Sbjct: 126 KIDIKNRQKISKKLVMEVLKGKNYEYFEISAK 157
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 101 bits (254), Expect = 6e-28
Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 17/151 (11%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
SVGK+S ++ D F ++ T+ F VKT +++ L++ DTAGQ+ Y +I A
Sbjct: 32 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAY 91
Query: 63 YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
Y G++L+Y I + +SF VQ ++ + + ++LVGNK
Sbjct: 92 YR-GAMGFLLMYDIANQESFAAVQDWATQIKTYSWD--------------NAQVILVGNK 136
Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAK 153
DL ER++ ++G+RLA+ F EASAK
Sbjct: 137 CDLEDERVVPAEDGRRLADDLGFEFFEASAK 167
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 101 bits (253), Expect = 7e-28
Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 17/151 (11%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
VGKS+L +F +F TI F ++ +++ + ++ DTAG + Y +I A
Sbjct: 39 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 98
Query: 63 YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
Y G +LVY I H ++E V+ +L D S++ I+LVGNK
Sbjct: 99 YR-GAVGALLVYDIAKHLTYENVERWLKELRDH--------------ADSNIVIMLVGNK 143
Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAK 153
DL R + DE + AE F+E SA
Sbjct: 144 SDLRHLRAVPTDEARAFAEKNGLSFIETSAL 174
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 101 bits (254), Expect = 7e-28
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 17/151 (11%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
VGKS+L +F +F TI F ++ +++ + ++ DTAGQ+ Y I A
Sbjct: 15 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAY 74
Query: 63 YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
Y G +LVY I H ++E V+ +L D S++ I+LVGNK
Sbjct: 75 YR-GAVGALLVYDIAKHLTYENVERWLKELRDH--------------ADSNIVIMLVGNK 119
Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAK 153
DL R + DE + AE F+E SA
Sbjct: 120 SDLRHLRAVPTDEARAFAEKNNLSFIETSAL 150
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 101 bits (253), Expect = 9e-28
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
VGK++L +F +F TI F +T + ++ DTAG + Y +I A
Sbjct: 35 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAY 94
Query: 63 YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
Y G +LV+ +T H+++ VV+ +L D ++ ++LVGNK
Sbjct: 95 YR-GAVGALLVFDLTKHQTYAVVERWLKELYDHAEA--------------TIVVMLVGNK 139
Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAK 153
DL R + +E + AE+ F+E SA
Sbjct: 140 SDLSQAREVPTEEARMFAENNGLLFLETSAL 170
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 100 bits (252), Expect = 9e-28
Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 17/151 (11%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
VGK+ + +F + F ++ TI F ++T ++ + L++ DTAGQ+ + +I A
Sbjct: 18 GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 77
Query: 63 YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
Y G +LVY IT+ KSF+ ++ + + + V +++GNK
Sbjct: 78 YR-GAMGIMLVYDITNEKSFDNIRNWIRNIEEH--------------ASADVEKMILGNK 122
Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAK 153
D++ +R +S + G++LA + F+E SAK
Sbjct: 123 CDVNDKRQVSKERGEKLALDYGIKFMETSAK 153
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 100 bits (252), Expect = 1e-27
Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 18/151 (11%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
VGKSSL ++F D F SY TI F ++T +N + L++ DTAGQ+ + +I
Sbjct: 19 GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTY 78
Query: 63 YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
Y HG ++VY +TS +SF V+ +I + V +LVGNK
Sbjct: 79 YR-GTHGVIVVYDVTSAESFVNVK-------RWLHEINQNC--------DDVCRILVGNK 122
Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAK 153
D +++ ++ + A E SAK
Sbjct: 123 NDDPERKVVETEDAYKFAGQMGIQLFETSAK 153
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 100 bits (252), Expect = 1e-27
Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 17/151 (11%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
VGKS L +QF D +F +D TI F + ++ + L++ DTAGQ+ + SI +
Sbjct: 31 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSY 90
Query: 63 YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
Y G +LVY IT ++F + + S++ I+L+GNK
Sbjct: 91 YR-GAAGALLVYDITRRETFNHLTSWLEDARQH--------------SSSNMVIMLIGNK 135
Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAK 153
DL R + +EG+ A F+E SAK
Sbjct: 136 SDLESRRDVKREEGEAFAREHGLIFMETSAK 166
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 100 bits (252), Expect = 1e-27
Identities = 49/151 (32%), Positives = 78/151 (51%), Gaps = 17/151 (11%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
SVGK+S ++ D F ++ T+ F VKT + + L++ DTAGQ+ Y +I A
Sbjct: 33 SVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAY 92
Query: 63 YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
Y G++L+Y IT+ +SF VQ ++ + + ++LVGNK
Sbjct: 93 YR-GAMGFILMYDITNEESFNAVQDWATQIKTYSWD--------------NAQVILVGNK 137
Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAK 153
D+ ER++ ++G+ LAE F EASAK
Sbjct: 138 CDMEEERVVPTEKGQLLAEQLGFDFFEASAK 168
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 100 bits (252), Expect = 1e-27
Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 23/157 (14%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
+VGKSS ++ +F ++ T+ F +KT ++ + L+L DTAGQ+ + SI +
Sbjct: 38 AVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSY 97
Query: 63 YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
+ G +L+Y +T KSF ++ D + D + +VPI+LVGNK
Sbjct: 98 FR-KADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE--------------TVPIMLVGNK 142
Query: 123 KDLH------MERMISYDEGKRLAESWKAGFVEASAK 153
D+ ++ + G++LA ++ A F E SAK
Sbjct: 143 ADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAK 179
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 100 bits (252), Expect = 1e-27
Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 17/151 (11%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
SVGK+S ++ D F ++ T+ F VKT N++ L++ DTAG + Y +I A
Sbjct: 18 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAY 77
Query: 63 YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
Y G++L+Y IT+ +SF VQ ++ + + ++LVGNK
Sbjct: 78 YR-GAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--------------NAQVLLVGNK 122
Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAK 153
D+ ER++S + G++LA+ F EASAK
Sbjct: 123 CDMEDERVVSSERGRQLADHLGFEFFEASAK 153
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 100 bits (252), Expect = 1e-27
Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 13/153 (8%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
VGK+SL Q+V+ +F + Y TI F K ++++ +++ DTAGQ+ + S+ A
Sbjct: 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAF 77
Query: 63 YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
Y VLV+ +T+ +F+ + D+ L +S + P + P V++GNK
Sbjct: 78 YR-GADCCVLVFDVTAPNTFKTLDSWRDEFL------IQASPRDP----ENFPFVVLGNK 126
Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAKQD 155
DL ++ + + E SAK+
Sbjct: 127 IDLENRQVATKRAQAWCYSKNNIPYFETSAKEA 159
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 99 bits (250), Expect = 1e-27
Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 18/154 (11%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
VGKS L ++FV+ +F S+ TI F +KT +N + L++ DTAGQ+ + +I A
Sbjct: 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAY 72
Query: 63 YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
Y G +LVY IT ++F ++ + + + ++LVGNK
Sbjct: 73 YR-GAMGIILVYDITDERTFTNIKQWFKTVNEHAND--------------EAQLLLVGNK 117
Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
D+ R+++ D+G+ LA+ F+E+SAK DD
Sbjct: 118 SDME-TRVVTADQGEALAKELGIPFIESSAKNDD 150
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 99.9 bits (250), Expect = 2e-27
Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 15/155 (9%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
VGKSSL ++V +F TI F K ++ +++ DTAGQ+ + S+
Sbjct: 17 GVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPF 76
Query: 63 YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
Y +L +S+ +SF+ + + + + VK P S P V++GNK
Sbjct: 77 YR-GSDCCLLTFSVDDSQSFQNLSNWKKEFI------YYADVKEP----ESFPFVILGNK 125
Query: 123 KDLHMERMISYDEGKRLAES-WKAGFVEASAKQDD 156
D+ ER +S +E + + E SAK
Sbjct: 126 IDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDAT 159
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 99.6 bits (249), Expect = 3e-27
Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 18/152 (11%)
Query: 5 SVGKSSLSIQFVDGQFV-DSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPA 61
VGK+ L ++F DG F+ ++ T+ F K ++ L++ DTAGQ+ + S+ A
Sbjct: 20 GVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHA 79
Query: 62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN 121
Y D H +L+Y +T+ SF+ +Q ++ + V ++L+GN
Sbjct: 80 YY-RDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH--------------DVALMLLGN 124
Query: 122 KKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
K D ER++ ++G++LA+ + F+E SAK
Sbjct: 125 KVDSAHERVVKREDGEKLAKEYGLPFMETSAK 156
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 100 bits (250), Expect = 4e-27
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 17/154 (11%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
VGKS+L +F +F TI F +T + + ++ DTAGQ+ Y +I A
Sbjct: 23 GVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAY 82
Query: 63 YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
Y G ++VY I+ S+E +L + +V + L+GNK
Sbjct: 83 YR-GAVGALIVYDISKSSSYENCNHWLSELREN--------------ADDNVAVGLIGNK 127
Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
DL R + +E K A+ + F E SA +
Sbjct: 128 SDLAHLRAVPTEESKTFAQENQLLFTETSALNSE 161
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 99.4 bits (248), Expect = 4e-27
Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 27/161 (16%)
Query: 6 VGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSM 65
VGK+SL + + + Y PT + F ++ + L+L DTAGQDE+
Sbjct: 31 VGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYT 90
Query: 66 DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDL 125
+ ++L +S+ S SF+ V + + P PI+LVG + DL
Sbjct: 91 NTDIFLLCFSVVSPSSFQNVSEKW---------VPEIRCHCP-----KAPIILVGTQSDL 136
Query: 126 ------------HMERMISYDEGKRLAESWKA-GFVEASAK 153
E+ + + K LAE KA ++E SA
Sbjct: 137 REDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSAL 177
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 99.3 bits (248), Expect = 6e-27
Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 18/155 (11%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
SVGK+ + +F G F + TI F +KT + + L++ DTAGQ+ + +I +
Sbjct: 39 SVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSY 98
Query: 63 YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
Y +G +L Y IT SF V + + G S++ +L+GNK
Sbjct: 99 YR-SANGAILAYDITKRSSFLSVPHWIEDVRKYAG--------------SNIVQLLIGNK 143
Query: 123 KDLHMERMISYDEGKRLAESWKA-GFVEASAKQDD 156
DL R +S E + LAE + +E SAK
Sbjct: 144 SDLSELREVSLAEAQSLAEHYDILCAIETSAKDSS 178
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 98.1 bits (245), Expect = 1e-26
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 18/155 (11%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
VGK+SL +F D F ++ T+ F +KT + + L++ DTAGQ+ + SI A
Sbjct: 36 GVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAY 95
Query: 63 YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
Y G +LVY IT ++F+ + + + ++LVGNK
Sbjct: 96 YR-SAKGIILVYDITKKETFDDLPKWMKMIDKYASE--------------DAELLLVGNK 140
Query: 123 KDLHMERMISYDEGKRLAESWKA-GFVEASAKQDD 156
D +R I+ +G++ A+ F EASAK +
Sbjct: 141 LDCETDREITRQQGEKFAQQITGMRFCEASAKDNF 175
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 97.4 bits (243), Expect = 2e-26
Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 27/164 (16%)
Query: 2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYS-IFP 60
G +VGK+ L I + F Y PT+ + F +N +L L DTAGQ++Y+ + P
Sbjct: 15 GDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRP 74
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
Y ++L +S+ S S+E V K +K VPIVLVG
Sbjct: 75 LSYR-GADVFILAFSLISKASYENVS-----------KKWIPELK---HYAPGVPIVLVG 119
Query: 121 NKKDL----------HMERMISYDEGKRLAESWKA-GFVEASAK 153
K DL I+ +G+ L + A ++E S+K
Sbjct: 120 TKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK 163
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 98.2 bits (245), Expect = 2e-26
Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 26/161 (16%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLV----------DTAGQ 53
VGK++ ++ D +F + T+ F K N Q + DTAGQ
Sbjct: 35 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ 94
Query: 54 DEY-SIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVS 112
+ + S+ A + D G++L++ +TS +SF V+ +L +
Sbjct: 95 ERFRSLTTAFFR-DAMGFLLMFDLTSQQSFLNVRNWMSQLQAN-------------AYCE 140
Query: 113 SVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
+ IVL+GNK DL +R ++ + + LA+ + + E SA
Sbjct: 141 NPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA 181
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 97.8 bits (244), Expect = 2e-26
Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 18/151 (11%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
VGKS L ++FV+ +F S+ TI F +KT +N + L+L DTAGQ+ + +I A
Sbjct: 30 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY 89
Query: 63 YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
Y G +LVY +T ++F ++ + + + ++LVGNK
Sbjct: 90 YR-GAMGIILVYDVTDERTFTNIKQWFKTVNEH--------------ANDEAQLLLVGNK 134
Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAK 153
D+ R+++ D+G+ LA+ F+E+SAK
Sbjct: 135 SDME-TRVVTADQGEALAKELGIPFIESSAK 164
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 96.9 bits (242), Expect = 2e-26
Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 16/156 (10%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLV--DTAGQDEY-SIFPA 61
VGK+SL ++V+ ++ Y TI F+ + D + DTAGQ+ + S+ A
Sbjct: 18 GVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVA 77
Query: 62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN 121
Y VLVY +T+ SFE ++ D+ L +++V SP + P V++GN
Sbjct: 78 FYR-GADCCVLVYDVTNASSFENIKSWRDEFL------VHANVNSP----ETFPFVILGN 126
Query: 122 KKDL-HMERMISYDEGKRLAESW-KAGFVEASAKQD 155
K D ++++S + LA+S SAK
Sbjct: 127 KIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNA 162
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 97.3 bits (243), Expect = 3e-26
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 26/161 (16%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTI-----------ENTFVKTTRMNNQDYDLKLVDTAGQ 53
VGK+S+ Q+ DG+F + T+ Q L+L DTAG
Sbjct: 21 GVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGL 80
Query: 54 DEY-SIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVS 112
+ + S+ A + D G++L++ +T+ +SF V+ +L +
Sbjct: 81 ERFRSLTTAFFR-DAMGFLLLFDLTNEQSFLNVRNWISQLQMH-------------AYSE 126
Query: 113 SVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAK 153
+ IVL GNK DL +R + +E + LAE + + E SA
Sbjct: 127 NPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAA 167
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 97.4 bits (243), Expect = 3e-26
Identities = 35/158 (22%), Positives = 63/158 (39%), Gaps = 19/158 (12%)
Query: 5 SVGKSSLSIQFVD--GQFVDSYDPTIENTF-VKTTRMNNQDYDLKL--VDTAGQDEY-SI 58
+VGKS+L F +F+ Y T V + + ++L +DTAG D Y
Sbjct: 30 TVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQ 89
Query: 59 FPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVL 118
++ ++ +LV+ ++S +SFE + ++++ + VL
Sbjct: 90 ISQYWN-GVYYAILVFDVSSMESFESCK-------AWFELLKSARPDRE----RPLRAVL 137
Query: 119 VGNKKDL-HMERMISYDEGKRLAESWKAGFVEASAKQD 155
V NK DL + D + A + F + SA
Sbjct: 138 VANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPP 175
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 93.7 bits (233), Expect = 6e-25
Identities = 38/162 (23%), Positives = 72/162 (44%), Gaps = 27/162 (16%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYS 64
+VGK+ L + + + F + Y PT+ + + + + + Y L L DTAGQ++Y
Sbjct: 28 AVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSY 87
Query: 65 MDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKD 124
+++ +S+ + SF+ V ++ V +VP +L+G + D
Sbjct: 88 PMTDVFLICFSVVNPASFQNV---KEE-----------WVPELKEYAPNVPFLLIGTQID 133
Query: 125 L------------HMERMISYDEGKRLAESWKA-GFVEASAK 153
L E+ I ++G++LA+ A +VE SA
Sbjct: 134 LRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL 175
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 93.7 bits (233), Expect = 9e-25
Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 29/166 (17%)
Query: 2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIFP 60
G +VGK+ L I + F Y PT+ + + ++ + +L L DTAGQ++Y + P
Sbjct: 37 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRP 96
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
Y +++ +S+ S SFE V+ + P + PI+LVG
Sbjct: 97 LSYP-QTDVFLICFSLVSPASFENVRAKW---------YPEVRHHCP-----NTPIILVG 141
Query: 121 NKKDL------------HMERMISYDEGKRLAESWKA-GFVEASAK 153
K DL I+Y +G +A+ A ++E SA
Sbjct: 142 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 91.7 bits (228), Expect = 3e-24
Identities = 35/165 (21%), Positives = 64/165 (38%), Gaps = 27/165 (16%)
Query: 2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPA 61
G GK++L F F ++Y PT+ + + ++ Q +L L DT+G Y
Sbjct: 14 GDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP 73
Query: 62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGN 121
D ++ + I+ ++ + V + + ++LVG
Sbjct: 74 LSYPDSDAVLICFDISRPETLDSVLKKW--------------KGEIQEFCPNTKMLLVGC 119
Query: 122 KKDL------------HMERMISYDEGKRLAESWKA-GFVEASAK 153
K DL H + +SYD+G +A+ A ++E SA
Sbjct: 120 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 164
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 91.7 bits (228), Expect = 5e-24
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 29/166 (17%)
Query: 2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIFP 60
G + GK+ L I F +F + Y PT+ +V ++ + +L L DTAGQ++Y + P
Sbjct: 32 GDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRP 91
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
Y D ++ +S+ S S E + + + P +VPI+LV
Sbjct: 92 LSYP-DTDVILMCFSVDSPDSLENIPEKW---------VPEVKHFCP-----NVPIILVA 136
Query: 121 NKKDL------------HMERMISYDEGKRLAESWKA-GFVEASAK 153
NKKDL + + D+G+ +A +A ++E SAK
Sbjct: 137 NKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 182
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 91.7 bits (228), Expect = 7e-24
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 29/166 (17%)
Query: 2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIFP 60
G GK+SL + F DG F +SY PT+ ++ ++ + L + DTAGQD+Y + P
Sbjct: 41 GDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRP 100
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
Y D +L + +TS SF+ + ++ ++ + VPI++VG
Sbjct: 101 LFYP-DASVLLLCFDVTSPNSFDNIF---NRWYP---EVNH--------FCKKVPIIVVG 145
Query: 121 NKKDL------------HMERMISYDEGKRLAESWKA-GFVEASAK 153
K DL + ++Y G+ +A S A ++E SA+
Sbjct: 146 CKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR 191
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 92.0 bits (228), Expect = 1e-23
Identities = 28/149 (18%), Positives = 50/149 (33%), Gaps = 22/149 (14%)
Query: 14 QFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKL--VDTAGQDEYSIFPAQY----SMDI 67
+F+D Q + T ++K KL T F + + +
Sbjct: 104 EFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLV 163
Query: 68 HGYVLVYSITSH--KSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDL 125
G++L ++ ++F+ L + K + PIV+V K D
Sbjct: 164 DGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAK-------------TKKPIVVVLTKCDE 210
Query: 126 HMERMISYDEGKRLAESWKAGFVEASAKQ 154
+ER I L++ VE SA+
Sbjct: 211 GVERYIRDAHTFALSK-KNLQVVETSARS 238
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 89.8 bits (223), Expect = 3e-23
Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 29/166 (17%)
Query: 2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIFP 60
G + GK+ L I F QF + Y PT+ ++ ++ + +L L DTAGQ++Y + P
Sbjct: 32 GDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRP 91
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
Y D ++ +SI S S E + +K ++++ +VPI+LVG
Sbjct: 92 LSYP-DTDVILMCFSIDSPDSLENIP---EKWT---PEVKH--------FCPNVPIILVG 136
Query: 121 NKKDL------------HMERMISYDEGKRLAESWKA-GFVEASAK 153
NKKDL + + +EG+ +A A G++E SAK
Sbjct: 137 NKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 90.1 bits (224), Expect = 3e-23
Identities = 28/151 (18%), Positives = 59/151 (39%), Gaps = 20/151 (13%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQ 62
GK++ + + G+F Y T+ N + DTAGQ+++ +
Sbjct: 25 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGY 84
Query: 63 YSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNK 122
Y + ++++ +TS +++ V + L+ + ++PIVL GNK
Sbjct: 85 Y-IQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC---------------ENIPIVLCGNK 128
Query: 123 KDLHMERMISYDEGKRLAESWKAGFVEASAK 153
D+ ++ + + + SAK
Sbjct: 129 VDIKDRKVK--AKSIVFHRKKNLQYYDISAK 157
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 89.0 bits (221), Expect = 6e-23
Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 29/166 (17%)
Query: 2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIFP 60
G GK++L F F ++Y PT+ + + ++ Q +L L DT+G Y ++ P
Sbjct: 35 GDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP 94
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
Y D ++ + I+ ++ + V + + ++LVG
Sbjct: 95 LSYP-DSDAVLICFDISRPETLDSVLKKW--------------KGEIQEFCPNTKMLLVG 139
Query: 121 NKKDL------------HMERMISYDEGKRLAESWKA-GFVEASAK 153
K DL H + +SYD+G +A+ A ++E SA
Sbjct: 140 CKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 185
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 88.8 bits (220), Expect = 9e-23
Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 29/170 (17%)
Query: 2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIFP 60
G GK+++ + ++Y PT+ + Q +L L DT+G Y ++ P
Sbjct: 34 GDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRP 93
Query: 61 AQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
YS D +L + I+ ++ + + P S ++L+G
Sbjct: 94 LCYS-DSDAVLLCFDISRPETVDSALKKW---------RTEILDYCP-----STRVLLIG 138
Query: 121 NKKDL------------HMERMISYDEGKRLAESWKA-GFVEASAKQDDY 157
K DL + ISY++G +A+ A ++E SA +
Sbjct: 139 CKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEK 188
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 86.8 bits (215), Expect = 4e-22
Identities = 37/192 (19%), Positives = 67/192 (34%), Gaps = 59/192 (30%)
Query: 2 GYRSVGKSSLSIQFVDGQFVDSYDPTI--------------------------------- 28
G SVGKSS+ ++ F ++ + TI
Sbjct: 14 GESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSIND 73
Query: 29 -----ENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQYSMDIHGYVLVYSITSHKSF 82
N + + DTAGQ+ Y SI P Y ++V+ I++ +
Sbjct: 74 DNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYR-GATCAIVVFDISNSNTL 132
Query: 83 EVVQI-LYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAE 141
+ + + ++ SS + I+LV NK D + + + E ++ A+
Sbjct: 133 DRAKTWVNQ--------LKISS---------NYIIILVANKIDKN-KFQVDILEVQKYAQ 174
Query: 142 SWKAGFVEASAK 153
F++ SAK
Sbjct: 175 DNNLLFIQTSAK 186
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 86.4 bits (214), Expect = 4e-22
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 29/167 (17%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
+G +VGK+ L I + F Y PT+ + + ++ + +L L DTAGQ++Y +
Sbjct: 11 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 70
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
P Y ++ +S+ S SFE V+ + P PI+LV
Sbjct: 71 PLSYP-QTDVSLICFSLVSPASFENVRAKW---------YPEVRHHCPN-----TPIILV 115
Query: 120 GNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASAK 153
G K DL I+Y +G +A+ A ++E SA
Sbjct: 116 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 162
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 84.5 bits (209), Expect = 1e-21
Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 20/158 (12%)
Query: 2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTF-VKTTRMNNQDYDLKLVDTAGQDEY-SIF 59
G +VGKSS+ ++FV F ++ +PTI F + +N ++ DTAGQ+ + S+
Sbjct: 10 GEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLA 69
Query: 60 PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLV 119
P Y + ++VY +T +SF + +L + + I LV
Sbjct: 70 PXYYR-NAQAALVVYDVTKPQSFIKARHWVKELHEQAS--------------KDIIIALV 114
Query: 120 GNKKDLHM---ERMISYDEGKRLAESWKAGFVEASAKQ 154
GNK D ER ++ +EG++LAE F E SAK
Sbjct: 115 GNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKT 152
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 83.1 bits (205), Expect = 2e-19
Identities = 24/167 (14%), Positives = 46/167 (27%), Gaps = 31/167 (18%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTT---------RMNNQDYDLKLVDTA 51
+G GK+SL Q + F T V ++ D
Sbjct: 47 IGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFG 106
Query: 52 GQDEY-SIFPAQYSMDIHGYVLVYSITSHKSFEV-VQILYDKLLDMTGKIQNSSVKSPTS 109
GQ+ + + Y+L+ + + ++ +
Sbjct: 107 GQEIMHASHQFFMT-RSSVYMLLLDSRTDSNKHYWLRHIE-------------------K 146
Query: 110 CVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
P+++V NK D + I + + + F S K D
Sbjct: 147 YGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD 193
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 74.3 bits (183), Expect = 1e-17
Identities = 30/170 (17%), Positives = 60/170 (35%), Gaps = 30/170 (17%)
Query: 2 GYRSVGKSSLSIQFVDGQFVD--SYDPTIENTF-VKTTRMNNQDYD---LKLVDTAGQDE 55
G GK++L Q + + D T+ ++ ++ L + D AG++E
Sbjct: 9 GNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE 68
Query: 56 Y-SIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSSV 114
+ S P + Y+ VY ++ ++ D + I+ + SS
Sbjct: 69 FYSTHPHFMT-QRALYLAVYDLSKGQAE------VDAMKPWLFNIKARA--------SSS 113
Query: 115 PIVLVGNKKDLHMER---MISYDEGKRLAES-----WKAGFVEASAKQDD 156
P++LVG D+ E+ K L + + ++ D
Sbjct: 114 PVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESD 163
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 71.9 bits (176), Expect = 9e-16
Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 31/167 (18%)
Query: 2 GYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPA 61
G +VGK+ L I + F Y PT+ + + ++ + +L L DTAG ++Y
Sbjct: 162 GDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRP 221
Query: 62 QYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSP--TSCVSSVPIVLV 119
+++ +S+ S SF V+ K P + PI+LV
Sbjct: 222 LSYPQTDVFLICFSLVSPASFHHVR---AKWY-------------PEVRHHCPNTPIILV 265
Query: 120 GNKKDL------------HMERMISYDEGKRLAESWKA-GFVEASAK 153
G K DL I+Y +G +A+ A ++E SA
Sbjct: 266 GTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 312
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 38.1 bits (88), Expect = 5e-04
Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 22/151 (14%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENT--FVKTTRMNNQDYDLKLVDTAGQDEY-- 56
MG GKSS+ + + + T + + L L D GQD +
Sbjct: 9 MGRSGSGKSSM-RSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFME 67
Query: 57 SIFPAQYSM---DIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCVSS 113
+ F Q + + V+ + S + + ++I L + + S
Sbjct: 68 NYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLR---KYS---------PD 115
Query: 114 VPIVLVGNKKDL--HMERMISYDEGKRLAES 142
I ++ +K DL +R + +
Sbjct: 116 AKIFVLLHKMDLVQLDKREELFQIMMKNLSE 146
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 37.0 bits (86), Expect = 9e-04
Identities = 24/122 (19%), Positives = 50/122 (40%), Gaps = 16/122 (13%)
Query: 7 GKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY-SIFPAQYSM 65
GK+ L ++ + GQ+ D+ +I ++ NN+ L L+D G + ++
Sbjct: 19 GKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKS 77
Query: 66 DIHGYVLVYSITSHKSF--EVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKK 123
V V + + +V + LY L+D + +S +++ NK+
Sbjct: 78 SARAVVFVVDSAAFQREVKDVAEFLYQVLID------------SMALKNSPSLLIACNKQ 125
Query: 124 DL 125
D+
Sbjct: 126 DI 127
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 35.9 bits (83), Expect = 0.002
Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 23/134 (17%)
Query: 5 SVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYD-------------LKLVDTA 51
GK++ ++++ + + + + + R D+ L
Sbjct: 24 LSGKTTN-LKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVP 82
Query: 52 GQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTGKIQNSSVKSPTSCV 111
GQ Y+ + G V V ++ + + + + + +
Sbjct: 83 GQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESM-RNMREN--------LAEYGLTL 133
Query: 112 SSVPIVLVGNKKDL 125
VPIV+ NK+DL
Sbjct: 134 DDVPIVIQVNKRDL 147
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 34.4 bits (79), Expect = 0.008
Identities = 22/125 (17%), Positives = 38/125 (30%), Gaps = 22/125 (17%)
Query: 7 GKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMD 66
GK+SL + + E + + LVD G + + Y
Sbjct: 24 GKTSLLTLLTTDSVRPTV-VSQEP--LSAADYDGSGV--TLVDFPGHVKLRYKLSDYLKT 78
Query: 67 IHGYV--LVY---SITSHKSF-EVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
+V L++ S K + L D L +N + I++
Sbjct: 79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG-----------IDILIAC 127
Query: 121 NKKDL 125
NK +L
Sbjct: 128 NKSEL 132
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 34.3 bits (79), Expect = 0.009
Identities = 22/125 (17%), Positives = 38/125 (30%), Gaps = 22/125 (17%)
Query: 7 GKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMD 66
GK+SL + + E + + LVD G + + Y
Sbjct: 60 GKTSLLTLLTTDSVRPTV-VSQEP--LSAADYDGSGV--TLVDFPGHVKLRYKLSDYLKT 114
Query: 67 IHGYV--LVY---SITSHKSF-EVVQILYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVG 120
+V L++ S K + L D L +N + I++
Sbjct: 115 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG-----------IDILIAC 163
Query: 121 NKKDL 125
NK +L
Sbjct: 164 NKSEL 168
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.011
Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 41/145 (28%)
Query: 39 NNQDY--DLKLVDTAGQDEYSIFPAQYS--MDIHGYVLVYSITSHKSFEVVQILYDKLLD 94
N DY +L +D Y + + L I + E ++ + L+
Sbjct: 165 NTDDYFEEL-------RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK---VFTQGLN 214
Query: 95 MTGKIQNSSVKSPTSCVSSVP-----IVLV--------GNKKDLHMERMISYDEG----- 136
+ ++N S + S+P I ++ + SY +G
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 137 KRL--------AESWKAGFVEASAK 153
+ L +SW++ F + K
Sbjct: 275 QGLVTAVAIAETDSWES-FFVSVRK 298
Score = 25.8 bits (56), Expect = 9.1
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 16/61 (26%)
Query: 52 GQDEYSIFPA---------QYSMDIHGYVLV-------YSITSHKSFEVVQILYDKLLDM 95
G D Y A + D +G+ ++ ++T H E + + + M
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM 1691
Query: 96 T 96
Sbjct: 1692 I 1692
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 30.3 bits (68), Expect = 0.17
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENT--FVKTTRMNNQDYDLKLVDTAGQDEYSI 58
MG R GKSS+ + V + + +E+T K N+ + ++ D GQ ++
Sbjct: 26 MGLRRSGKSSI-QKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFD 84
Query: 59 FPAQYSMDIHG-YVLVYSITSHKSFE 83
Y M G L+Y I + +
Sbjct: 85 PTFDYEMIFRGTGALIYVIDAQDDYM 110
>3h0o_A Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI stacking
interactions, TRIS inhibition, hydrolase, glycosidase;
1.40A {Fibrobacter succinogenes} PDB: 1mve_A 1zm1_A*
2r4a_A 3hr9_A 2r49_A 3axd_A 3axe_A*
Length = 240
Score = 27.8 bits (62), Expect = 1.4
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Query: 15 FVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIFPAQYSMDIHGYVLVY 74
VDGQ V + + T + + + GQ + S P ++ +V VY
Sbjct: 110 TVDGQEVRKTEGGQVSNLTGTQGLRFNLWSSESAAWVGQFDESKLPLFQFIN---WVKVY 166
Query: 75 SITS 78
T
Sbjct: 167 KYTP 170
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 1.8
Identities = 26/176 (14%), Positives = 51/176 (28%), Gaps = 56/176 (31%)
Query: 1 MGYRSVGKSSLSIQ----------FVDGQF------VDSYDPTIENTFVKTTRMNNQDYD 44
+ GK+ +++ F +S + +E + Y
Sbjct: 158 VL--GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM-------LQKLLYQ 208
Query: 45 LKLVDTAGQDEYSIFPAQYS---------MDIHGY-----VL--VYSITSHKSFEV-VQI 87
+ T+ D S + + Y VL V + + +F + +I
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 88 LYDKLLDMTGKIQNSSVKSPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESW 143
L +T + V S ++ I L H ++ DE K L +
Sbjct: 269 L------LT--TRFKQVTDFLSAATTTHISLD------HHSMTLTPDEVKSLLLKY 310
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 27.4 bits (61), Expect = 2.4
Identities = 3/11 (27%), Positives = 5/11 (45%)
Query: 132 SYDEGKRLAES 142
Y K+L +
Sbjct: 147 IYSVSKQLLDR 157
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 26.7 bits (59), Expect = 3.5
Identities = 3/11 (27%), Positives = 5/11 (45%)
Query: 132 SYDEGKRLAES 142
Y K+L +
Sbjct: 171 IYACSKQLMDR 181
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 26.6 bits (58), Expect = 4.5
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 1 MGYRSVGKSSLSIQFVDGQFVDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEY 56
MG R GKSS+ + V +E+T + + DL +++ GQ Y
Sbjct: 5 MGVRRCGKSSI-CKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNY 59
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 26.3 bits (58), Expect = 5.2
Identities = 29/160 (18%), Positives = 60/160 (37%), Gaps = 25/160 (15%)
Query: 2 GYRSVGKSSLSIQFVDGQF-VDSYDPTIENTFVKTTRMNNQDYDLKLVDTAGQDEYSIF- 59
G+ +VGKS+L + + SY T V + + + +++DT G +
Sbjct: 174 GHPNVGKSTLLKALTTAKPEIASYPFTTRGINVG--QFEDGYFRYQIIDTPG-----LLD 226
Query: 60 -PAQYSMDIHGYVLVYSITSHKSFEVVQILYDKLLDMTG------KIQNSSVKSPTSCVS 112
P +I +I + + + I+Y + D + + Q +
Sbjct: 227 RPISERNEIEKQ----AILALRYLGNL-IIY--IFDPSEHCGFPLEEQIHLFEEVHGEFK 279
Query: 113 SVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASA 152
+P ++V NK D+ E I ++ + ++ SA
Sbjct: 280 DLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISA 317
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 25.2 bits (56), Expect = 8.0
Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 30/120 (25%)
Query: 45 LKLVDTAGQDEYSIFPAQYSMDIHGYVLVYSITSHKSFEVVQ----ILYDKLLDMTGKIQ 100
L ++DTAG E + D V I ++++ ++ +L+ ++D T
Sbjct: 54 LHIIDTAGLRE--------ASDE-----VERIGIERAWQEIEQADRVLF--MVDGTTTDA 98
Query: 101 NSSVK----SPTSCVSSVPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQDD 156
+ + +PI +V NK D+ E ++E + SA+ +
Sbjct: 99 VDPAEIWPEFIARLPAKLPITVVRNKADIT-------GETLGMSEVNGHALIRLSARTGE 151
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 25.8 bits (57), Expect = 8.0
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 114 VPIVLVGNKKDLHMERMISYDEGKRLAESWKAGFVEASAKQ 154
+P V+V NK D+ E+ +A + SA Q
Sbjct: 141 IPFVVVVNKIDVLGEKAEELKGLYESRY--EAKVLLVSALQ 179
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.370
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,269,792
Number of extensions: 118434
Number of successful extensions: 619
Number of sequences better than 10.0: 1
Number of HSP's gapped: 407
Number of HSP's successfully gapped: 114
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)