Query psy1877
Match_columns 76
No_of_seqs 108 out of 593
Neff 4.2
Searched_HMMs 46136
Date Fri Aug 16 18:34:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1877.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1877hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2366|consensus 99.9 1.6E-25 3.6E-30 176.0 3.9 63 1-63 126-205 (414)
2 PLN02229 alpha-galactosidase 99.9 5.5E-25 1.2E-29 173.5 3.6 67 1-67 146-229 (427)
3 PLN02692 alpha-galactosidase 99.9 7.9E-24 1.7E-28 166.4 3.1 67 1-67 139-223 (412)
4 PLN02808 alpha-galactosidase 99.9 9.1E-24 2E-28 164.6 2.9 67 1-67 115-199 (386)
5 PLN03231 putative alpha-galact 99.7 1.2E-18 2.7E-23 134.9 3.4 68 1-68 104-229 (357)
6 PLN02899 alpha-galactosidase 99.4 4.9E-14 1.1E-18 116.1 2.4 51 17-68 181-260 (633)
7 PF02065 Melibiase: Melibiase; 94.6 0.052 1.1E-06 42.8 4.2 21 22-42 174-194 (394)
8 KOG2672|consensus 45.6 20 0.00043 28.8 2.5 30 14-43 136-167 (360)
9 cd01948 EAL EAL domain. This d 36.4 31 0.00066 23.2 2.0 25 17-41 153-177 (240)
10 PF00563 EAL: EAL domain; Int 34.8 20 0.00044 24.0 1.0 26 17-42 155-180 (236)
11 PF08821 CGGC: CGGC domain; I 34.0 56 0.0012 21.5 2.9 37 5-43 41-77 (107)
12 smart00052 EAL Putative diguan 32.0 40 0.00087 22.6 2.1 27 17-43 154-180 (241)
13 COG4574 Eco Serine protease in 30.9 18 0.00039 26.1 0.2 22 22-43 79-100 (162)
14 PRK14057 epimerase; Provisiona 29.5 52 0.0011 25.0 2.5 31 15-45 29-62 (254)
15 PRK08005 epimerase; Validated 28.8 56 0.0012 23.8 2.5 30 16-45 11-43 (210)
16 PRK08091 ribulose-phosphate 3- 26.6 68 0.0015 23.8 2.6 31 15-45 22-55 (228)
17 PRK08883 ribulose-phosphate 3- 26.4 70 0.0015 23.2 2.6 32 15-46 9-43 (220)
18 PRK08745 ribulose-phosphate 3- 26.0 67 0.0015 23.5 2.5 32 15-46 13-47 (223)
19 KOG3357|consensus 24.5 12 0.00026 26.9 -1.6 23 52-75 115-137 (167)
20 cd06592 GH31_glucosidase_KIAA1 23.8 64 0.0014 24.0 2.1 18 25-42 148-166 (303)
21 PF00834 Ribul_P_3_epim: Ribul 23.3 1.1E+02 0.0024 21.9 3.2 31 15-45 9-42 (201)
22 cd06593 GH31_xylosidase_YicI Y 22.6 59 0.0013 24.0 1.6 18 25-42 143-160 (308)
23 PTZ00170 D-ribulose-5-phosphat 22.5 91 0.002 22.5 2.6 31 15-45 16-49 (228)
24 PF10566 Glyco_hydro_97: Glyco 21.9 21 0.00044 27.3 -0.9 28 24-51 112-139 (273)
No 1
>KOG2366|consensus
Probab=99.91 E-value=1.6e-25 Score=176.05 Aligned_cols=63 Identities=51% Similarity=1.049 Sum_probs=61.3
Q ss_pred CccCccccccCCCCCccchHHHhHHHHHhccccEEEeeCCCCCCCCCCCcc----------------c-CCCCCCCCCcc
Q psy1877 1 MYEDYGNYTCAGYPGILGYLERDAYSFAEWNVDYIKIDGCYSHPSDMDRGK----------------T-TSYPNYQISLT 63 (76)
Q Consensus 1 IYtd~G~~TC~g~pGS~ghe~~DA~~fA~WGvDylK~D~C~~~~~~~~~~Y----------------s-C~Wp~y~~~~w 63 (76)
||+|+|++||+|+|||++||++||+|||+|||||||+|+|+..+.++.++| | |+||.|+++.|
T Consensus 126 iYsD~G~~TC~g~PGS~~~e~~DA~tFA~WgvDylKlD~C~~~~~~~~~~Yp~ms~aLN~tGrpi~ySlC~W~~~~~~~~ 205 (414)
T KOG2366|consen 126 IYSDAGNFTCAGYPGSLGHEESDAKTFADWGVDYLKLDGCFNNLITMPEGYPIMSRALNNTGRPIFYSLCSWPAYHPGLP 205 (414)
T ss_pred eeeccCchhhccCCcccchhhhhhhhhHhhCCcEEeccccccccccccccchhHHHHHhccCCceEEEeccCcccccCcc
Confidence 799999999999999999999999999999999999999999999999999 5 99999999999
No 2
>PLN02229 alpha-galactosidase
Probab=99.90 E-value=5.5e-25 Score=173.50 Aligned_cols=67 Identities=34% Similarity=0.465 Sum_probs=61.4
Q ss_pred CccCccccccCCCCCccchHHHhHHHHHhccccEEEeeCCCCCCCCCCCcc-----------------cCCCCCCCCCcc
Q psy1877 1 MYEDYGNYTCAGYPGILGYLERDAYSFAEWNVDYIKIDGCYSHPSDMDRGK-----------------TTSYPNYQISLT 63 (76)
Q Consensus 1 IYtd~G~~TC~g~pGS~ghe~~DA~~fA~WGvDylK~D~C~~~~~~~~~~Y-----------------sC~Wp~y~~~~w 63 (76)
||+++|+.||+++|||+|||++||++||+|||||||||+|+.+..++.++| +|+||...|+.|
T Consensus 146 Iy~d~G~~TC~~~pGS~g~e~~DA~~fA~WGVDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpI~~SlC~WG~~~p~~w 225 (427)
T PLN02229 146 IYSDAGVFTCQVRPGSLFHEVDDADIFASWGVDYLKYDNCYNLGIKPIERYPPMRDALNATGRSIFYSLCEWGVDDPALW 225 (427)
T ss_pred EeccCCCcccCCCCCCccHHHHHHHHHHHcCCCEEEecCCCCCCcchhHHHHHHHHHHHhhCCCcEEEecCCCCCCHHHH
Confidence 799999999999999999999999999999999999999998777666666 499999999999
Q ss_pred cccc
Q psy1877 64 ARLV 67 (76)
Q Consensus 64 a~~~ 67 (76)
++.+
T Consensus 226 ~~~~ 229 (427)
T PLN02229 226 AGKV 229 (427)
T ss_pred HHhh
Confidence 8754
No 3
>PLN02692 alpha-galactosidase
Probab=99.88 E-value=7.9e-24 Score=166.41 Aligned_cols=67 Identities=34% Similarity=0.630 Sum_probs=60.3
Q ss_pred CccCccccccCC-CCCccchHHHhHHHHHhccccEEEeeCCCCCCCCCCCcc-----------------cCCCCCCCCCc
Q psy1877 1 MYEDYGNYTCAG-YPGILGYLERDAYSFAEWNVDYIKIDGCYSHPSDMDRGK-----------------TTSYPNYQISL 62 (76)
Q Consensus 1 IYtd~G~~TC~g-~pGS~ghe~~DA~~fA~WGvDylK~D~C~~~~~~~~~~Y-----------------sC~Wp~y~~~~ 62 (76)
||+++|..||++ +|||+|||++||++||+|||||||||+|+.+...+.++| +|+||.+.|+.
T Consensus 139 Iy~d~G~~tC~~~~pGS~g~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpI~~SlC~wg~~~p~~ 218 (412)
T PLN02692 139 IYSDAGYFTCSKTMPGSLGHEEQDAKTFASWGIDYLKYDNCNNDGSKPTVRYPVMTRALMKAGRPIFFSLCEWGDMHPAL 218 (412)
T ss_pred EEecCCccccCCCCCCchHHHHHHHHHHHhcCCCEEeccccCCCCcchhHHHHHHHHHHHHhCCCeEEEecCCCcCChhh
Confidence 799999999975 899999999999999999999999999998766666666 59999999999
Q ss_pred ccccc
Q psy1877 63 TARLV 67 (76)
Q Consensus 63 wa~~~ 67 (76)
|++.+
T Consensus 219 w~~~~ 223 (412)
T PLN02692 219 WGSKV 223 (412)
T ss_pred hhhhc
Confidence 98754
No 4
>PLN02808 alpha-galactosidase
Probab=99.88 E-value=9.1e-24 Score=164.59 Aligned_cols=67 Identities=31% Similarity=0.564 Sum_probs=60.4
Q ss_pred CccCccccccCC-CCCccchHHHhHHHHHhccccEEEeeCCCCCCCCCCCcc-----------------cCCCCCCCCCc
Q psy1877 1 MYEDYGNYTCAG-YPGILGYLERDAYSFAEWNVDYIKIDGCYSHPSDMDRGK-----------------TTSYPNYQISL 62 (76)
Q Consensus 1 IYtd~G~~TC~g-~pGS~ghe~~DA~~fA~WGvDylK~D~C~~~~~~~~~~Y-----------------sC~Wp~y~~~~ 62 (76)
||+++|..||++ +|||+|||++||++||+|||||||||+|+.+...+.++| +|+||...|+.
T Consensus 115 iy~~~G~~tC~~~~pGs~~~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpi~~slc~wg~~~p~~ 194 (386)
T PLN02808 115 IYSDAGTLTCSKTMPGSLGHEEQDAKTFASWGIDYLKYDNCENTGTSPQERYPKMSKALLNSGRPIFFSLCEWGQEDPAT 194 (386)
T ss_pred EEecCCccccCCCCCcchHHHHHHHHHHHHhCCCEEeecCcCCCCccHHHHHHHHHHHHHHhCCCeEEEecCCCCCCHHH
Confidence 799999999976 799999999999999999999999999998776666666 59999999999
Q ss_pred ccccc
Q psy1877 63 TARLV 67 (76)
Q Consensus 63 wa~~~ 67 (76)
|++.+
T Consensus 195 w~~~~ 199 (386)
T PLN02808 195 WAGDI 199 (386)
T ss_pred HHHhh
Confidence 98654
No 5
>PLN03231 putative alpha-galactosidase; Provisional
Probab=99.73 E-value=1.2e-18 Score=134.94 Aligned_cols=68 Identities=21% Similarity=0.117 Sum_probs=56.0
Q ss_pred CccCccccccC--------CCCCccchH----------------------------------HHhHHHHHhccccEEEee
Q psy1877 1 MYEDYGNYTCA--------GYPGILGYL----------------------------------ERDAYSFAEWNVDYIKID 38 (76)
Q Consensus 1 IYtd~G~~TC~--------g~pGS~ghe----------------------------------~~DA~~fA~WGvDylK~D 38 (76)
||+++|+.||+ |+|||+||| ++||++||+|||||||||
T Consensus 104 IY~~~G~~tca~~~~~pi~G~~Gs~g~~~~a~Dia~~~~~c~~~~~~~~~v~~~~~gaq~y~~~~a~~fA~WGVDylK~D 183 (357)
T PLN03231 104 IHVMRGISTTAVKKKTPILGAFKSNGHAWNAKDIALMDQACPWMQQCFVGVNTSSEGGKLFIQSLYDQYASWGIDFIKHD 183 (357)
T ss_pred EEecCCccchhcccCCccCCCCcccccccchhhhccccccccccccccccccccchhHHHHHHHHHHHHHHhCCCEEeec
Confidence 79999999998 889999875 677999999999999999
Q ss_pred CCCCCCCCCCCcc----------------cCCCCCCCCCccccccc
Q psy1877 39 GCYSHPSDMDRGK----------------TTSYPNYQISLTARLVS 68 (76)
Q Consensus 39 ~C~~~~~~~~~~Y----------------sC~Wp~y~~~~wa~~~~ 68 (76)
+|+.+.....++| ||+++...++.|+..+.
T Consensus 184 ~c~~~~~~~~~~y~~m~~AL~~tGRpIv~Slc~g~~~~~~~~~~i~ 229 (357)
T PLN03231 184 CVFGAENPQLDEILTVSKAIRNSGRPMIYSLSPGDGATPGLAARVA 229 (357)
T ss_pred ccCCCCcccHHHHHHHHHHHHHhCCCeEEEecCCCCCCchhhhhhh
Confidence 9987655454555 66667788888876654
No 6
>PLN02899 alpha-galactosidase
Probab=99.43 E-value=4.9e-14 Score=116.07 Aligned_cols=51 Identities=25% Similarity=0.388 Sum_probs=38.5
Q ss_pred cchHHHhH-------------HHHHhccccEEEeeCCCCCCCCCCCcc----------------cCCCCCCCCCcccccc
Q psy1877 17 LGYLERDA-------------YSFAEWNVDYIKIDGCYSHPSDMDRGK----------------TTSYPNYQISLTARLV 67 (76)
Q Consensus 17 ~ghe~~DA-------------~~fA~WGvDylK~D~C~~~~~~~~~~Y----------------sC~Wp~y~~~~wa~~~ 67 (76)
+|||.+|| ++||+|||||||||+|+.+... .+.| ||+++...++.|+..+
T Consensus 181 ~g~~~vDa~~~~g~a~~~Sla~tfAsWGVDyLKyD~c~~~~~~-~~ey~~ms~AL~aTGRPIvySLspG~~~~p~wa~~v 259 (633)
T PLN02899 181 HGFMSVNTKLGAGKAFLRSLYDQYAEWGVDFVKHDCVFGDDFD-LEEITYVSEVLKELDRPIVYSLSPGTSATPTMAKEV 259 (633)
T ss_pred CCcccccccccchhhhhHHHHHHHHHhCCCEEEEcCCCCCCCC-hHHHHHHHHHHHHhCCCeEEEecCCcccchhhhhhh
Confidence 57777775 9999999999999999874432 2334 6667777888888766
Q ss_pred c
Q psy1877 68 S 68 (76)
Q Consensus 68 ~ 68 (76)
+
T Consensus 260 ~ 260 (633)
T PLN02899 260 S 260 (633)
T ss_pred h
Confidence 4
No 7
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=94.63 E-value=0.052 Score=42.82 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=14.9
Q ss_pred HhHHHHHhccccEEEeeCCCC
Q psy1877 22 RDAYSFAEWNVDYIKIDGCYS 42 (76)
Q Consensus 22 ~DA~~fA~WGvDylK~D~C~~ 42 (76)
+-.+.+++|||||||.|.+..
T Consensus 174 ~i~~ll~~~gidYiK~D~n~~ 194 (394)
T PF02065_consen 174 VIDRLLREWGIDYIKWDFNRD 194 (394)
T ss_dssp HHHHHHHHTT-SEEEEE-TS-
T ss_pred HHHHHHHhcCCCEEEeccccC
Confidence 445668999999999999864
No 8
>KOG2672|consensus
Probab=45.56 E-value=20 Score=28.77 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=21.7
Q ss_pred CCccc--hHHHhHHHHHhccccEEEeeCCCCC
Q psy1877 14 PGILG--YLERDAYSFAEWNVDYIKIDGCYSH 43 (76)
Q Consensus 14 pGS~g--he~~DA~~fA~WGvDylK~D~C~~~ 43 (76)
|+-+. --+.-|+..|+||+|||-+.--..+
T Consensus 136 PpPlDp~EPeNTAeAIasWgl~YiVlTSVDRD 167 (360)
T KOG2672|consen 136 PPPLDPNEPENTAEAIASWGLDYIVLTSVDRD 167 (360)
T ss_pred CcCCCCCCcccHHHHHHHcCCCeEEEEecccc
Confidence 55544 2346788999999999998766544
No 9
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=36.42 E-value=31 Score=23.17 Aligned_cols=25 Identities=28% Similarity=0.402 Sum_probs=19.0
Q ss_pred cchHHHhHHHHHhccccEEEeeCCC
Q psy1877 17 LGYLERDAYSFAEWNVDYIKIDGCY 41 (76)
Q Consensus 17 ~ghe~~DA~~fA~WGvDylK~D~C~ 41 (76)
+|....+...+.++.+||||+|.=.
T Consensus 153 ~g~~~~~~~~l~~~~~d~iKld~~~ 177 (240)
T cd01948 153 FGTGYSSLSYLKRLPVDYLKIDRSF 177 (240)
T ss_pred CCCcHhhHHHHHhCCCCEEEECHHH
Confidence 4455566678899999999999543
No 10
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=34.84 E-value=20 Score=24.00 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=19.1
Q ss_pred cchHHHhHHHHHhccccEEEeeCCCC
Q psy1877 17 LGYLERDAYSFAEWNVDYIKIDGCYS 42 (76)
Q Consensus 17 ~ghe~~DA~~fA~WGvDylK~D~C~~ 42 (76)
+|....+.+.+..+.+|+||+|.=..
T Consensus 155 ~g~~~~~~~~l~~l~~~~ikld~~~~ 180 (236)
T PF00563_consen 155 FGSGSSSLEYLASLPPDYIKLDGSLV 180 (236)
T ss_dssp ETSTCGCHHHHHHHCGSEEEEEHHGH
T ss_pred ccCCcchhhhhhhcccccceeecccc
Confidence 34444567778999999999996433
No 11
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=34.00 E-value=56 Score=21.53 Aligned_cols=37 Identities=30% Similarity=0.577 Sum_probs=28.5
Q ss_pred ccccccCCCCCccchHHHhHHHHHhccccEEEeeCCCCC
Q psy1877 5 YGNYTCAGYPGILGYLERDAYSFAEWNVDYIKIDGCYSH 43 (76)
Q Consensus 5 ~G~~TC~g~pGS~ghe~~DA~~fA~WGvDylK~D~C~~~ 43 (76)
.|-.||+|=||.- ...-++.+..+|+|-|.+-.|=..
T Consensus 41 vgf~~CgGCpg~~--~~~~~~~l~~~~~d~IHlssC~~~ 77 (107)
T PF08821_consen 41 VGFFTCGGCPGRK--LVRRIKKLKKNGADVIHLSSCMVK 77 (107)
T ss_pred EEEeeCCCCChhH--HHHHHHHHHHCCCCEEEEcCCEec
Confidence 4667999988543 345677788999999999999654
No 12
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=31.97 E-value=40 Score=22.61 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=19.7
Q ss_pred cchHHHhHHHHHhccccEEEeeCCCCC
Q psy1877 17 LGYLERDAYSFAEWNVDYIKIDGCYSH 43 (76)
Q Consensus 17 ~ghe~~DA~~fA~WGvDylK~D~C~~~ 43 (76)
+|........+....+||||+|.-...
T Consensus 154 fg~~~~~~~~l~~l~~d~iKld~~~~~ 180 (241)
T smart00052 154 FGTGYSSLSYLKRLPVDLLKIDKSFVR 180 (241)
T ss_pred CCCcHHHHHHHHhCCCCeEEECHHHHh
Confidence 444445667788889999999976543
No 13
>COG4574 Eco Serine protease inhibitor ecotin [General function prediction only]
Probab=30.91 E-value=18 Score=26.09 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=18.3
Q ss_pred HhHHHHHhccccEEEeeCCCCC
Q psy1877 22 RDAYSFAEWNVDYIKIDGCYSH 43 (76)
Q Consensus 22 ~DA~~fA~WGvDylK~D~C~~~ 43 (76)
...+|+-.||.||.-+|.-..+
T Consensus 79 LEtkTLeGWGy~Yyv~DkVs~P 100 (162)
T COG4574 79 LETKTLEGWGYDYYVFDKVSSP 100 (162)
T ss_pred eccceeccccceeEEEeccCCc
Confidence 4467899999999999987664
No 14
>PRK14057 epimerase; Provisional
Probab=29.54 E-value=52 Score=24.96 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=25.0
Q ss_pred CccchHHHhHHHHHhccccEEEee---CCCCCCC
Q psy1877 15 GILGYLERDAYSFAEWNVDYIKID---GCYSHPS 45 (76)
Q Consensus 15 GS~ghe~~DA~~fA~WGvDylK~D---~C~~~~~ 45 (76)
..+++.+.+.+.+.++|+|+|.+| +-+.+..
T Consensus 29 aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNi 62 (254)
T PRK14057 29 GQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQF 62 (254)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCccCCcc
Confidence 456788999999999999999965 6666543
No 15
>PRK08005 epimerase; Validated
Probab=28.76 E-value=56 Score=23.84 Aligned_cols=30 Identities=3% Similarity=-0.032 Sum_probs=24.0
Q ss_pred ccchHHHhHHHHHhccccEEEee---CCCCCCC
Q psy1877 16 ILGYLERDAYSFAEWNVDYIKID---GCYSHPS 45 (76)
Q Consensus 16 S~ghe~~DA~~fA~WGvDylK~D---~C~~~~~ 45 (76)
-+.+.+.+.+.+.+.|+|+|.+| +-+.+..
T Consensus 11 d~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN~ 43 (210)
T PRK08005 11 DPLRYAEALTALHDAPLGSLHLDIEDTSFINNI 43 (210)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeccCCCcCCcc
Confidence 35688899999999999999965 6666544
No 16
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=26.65 E-value=68 Score=23.79 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=24.7
Q ss_pred CccchHHHhHHHHHhccccEEEee---CCCCCCC
Q psy1877 15 GILGYLERDAYSFAEWNVDYIKID---GCYSHPS 45 (76)
Q Consensus 15 GS~ghe~~DA~~fA~WGvDylK~D---~C~~~~~ 45 (76)
+.+.+.+.+.+.+.+.|+|+|.+| +-+.+..
T Consensus 22 ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNi 55 (228)
T PRK08091 22 SNWLKFNETLTTLSENQLRLLHFDIADGQFSPFF 55 (228)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCcc
Confidence 456788899999999999999965 6666543
No 17
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=26.39 E-value=70 Score=23.19 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=25.7
Q ss_pred CccchHHHhHHHHHhccccEEEe---eCCCCCCCC
Q psy1877 15 GILGYLERDAYSFAEWNVDYIKI---DGCYSHPSD 46 (76)
Q Consensus 15 GS~ghe~~DA~~fA~WGvDylK~---D~C~~~~~~ 46 (76)
+-+.+.+.+.+.+.+.|+|+|.+ |+.+.+...
T Consensus 9 ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~t 43 (220)
T PRK08883 9 ADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLT 43 (220)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCcccCccc
Confidence 34568889999999999999996 588876554
No 18
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=25.99 E-value=67 Score=23.51 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=25.6
Q ss_pred CccchHHHhHHHHHhccccEEEe---eCCCCCCCC
Q psy1877 15 GILGYLERDAYSFAEWNVDYIKI---DGCYSHPSD 46 (76)
Q Consensus 15 GS~ghe~~DA~~fA~WGvDylK~---D~C~~~~~~ 46 (76)
.-+.+.+.+.+.+.+.|+|+|.+ |+.+.+...
T Consensus 13 ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~t 47 (223)
T PRK08745 13 ADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLT 47 (223)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcc
Confidence 34568889999999999999996 577776543
No 19
>KOG3357|consensus
Probab=24.49 E-value=12 Score=26.89 Aligned_cols=23 Identities=35% Similarity=0.322 Sum_probs=17.1
Q ss_pred cCCCCCCCCCcccccccccccccC
Q psy1877 52 TTSYPNYQISLTARLVSLFGSASA 75 (76)
Q Consensus 52 sC~Wp~y~~~~wa~~~~~~~~~~~ 75 (76)
+|-=-.+.| +|||.||-||-|-|
T Consensus 115 iclt~hfkp-lwarn~pkfgiaha 137 (167)
T KOG3357|consen 115 ICLTDHFKP-LWARNVPKFGIAHA 137 (167)
T ss_pred Eeeccccch-hhhhcCcchhHHHH
Confidence 675444444 89999999998754
No 20
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=23.79 E-value=64 Score=24.04 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=14.3
Q ss_pred HHHH-hccccEEEeeCCCC
Q psy1877 25 YSFA-EWNVDYIKIDGCYS 42 (76)
Q Consensus 25 ~~fA-~WGvDylK~D~C~~ 42 (76)
+.+. ++|||++|.|.+-.
T Consensus 148 ~~~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 148 KSLQEKYGIDSFKFDAGEA 166 (303)
T ss_pred HHHHHHhCCcEEEeCCCCc
Confidence 3444 89999999998764
No 21
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=23.29 E-value=1.1e+02 Score=21.91 Aligned_cols=31 Identities=23% Similarity=0.315 Sum_probs=23.3
Q ss_pred CccchHHHhHHHHHhccccEEEe---eCCCCCCC
Q psy1877 15 GILGYLERDAYSFAEWNVDYIKI---DGCYSHPS 45 (76)
Q Consensus 15 GS~ghe~~DA~~fA~WGvDylK~---D~C~~~~~ 45 (76)
+.+.+.+.+.+++.+.|+|+|.+ |+-+.+..
T Consensus 9 ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~ 42 (201)
T PF00834_consen 9 ADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNL 42 (201)
T ss_dssp S-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeecccccCCcc
Confidence 44678899999999999999995 56776543
No 22
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=22.57 E-value=59 Score=23.97 Aligned_cols=18 Identities=22% Similarity=0.132 Sum_probs=14.9
Q ss_pred HHHHhccccEEEeeCCCC
Q psy1877 25 YSFAEWNVDYIKIDGCYS 42 (76)
Q Consensus 25 ~~fA~WGvDylK~D~C~~ 42 (76)
+.+-++|||++|.|.+..
T Consensus 143 ~~~~~~Gid~~~~D~~e~ 160 (308)
T cd06593 143 KPLLDMGVDCFKTDFGER 160 (308)
T ss_pred HHHHHhCCcEEecCCCCC
Confidence 456789999999998864
No 23
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=22.52 E-value=91 Score=22.46 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=24.1
Q ss_pred CccchHHHhHHHHHhccccEEEee---CCCCCCC
Q psy1877 15 GILGYLERDAYSFAEWNVDYIKID---GCYSHPS 45 (76)
Q Consensus 15 GS~ghe~~DA~~fA~WGvDylK~D---~C~~~~~ 45 (76)
+.+.+.+.+.+.+.+.|+|+|.+| +-+.+..
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~ 49 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNL 49 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCc
Confidence 345688899999999999999975 6666543
No 24
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=21.93 E-value=21 Score=27.31 Aligned_cols=28 Identities=25% Similarity=0.249 Sum_probs=19.1
Q ss_pred HHHHHhccccEEEeeCCCCCCCCCCCcc
Q psy1877 24 AYSFAEWNVDYIKIDGCYSHPSDMDRGK 51 (76)
Q Consensus 24 A~~fA~WGvDylK~D~C~~~~~~~~~~Y 51 (76)
.+.+++|||.=||+|.=..++..+..-|
T Consensus 112 f~~~~~~Gv~GvKidF~~~d~Q~~v~~y 139 (273)
T PF10566_consen 112 FKLYAKWGVKGVKIDFMDRDDQEMVNWY 139 (273)
T ss_dssp HHHHHHCTEEEEEEE--SSTSHHHHHHH
T ss_pred HHHHHHcCCCEEeeCcCCCCCHHHHHHH
Confidence 4568999999999998877655444434
Done!