Query psy1877
Match_columns 76
No_of_seqs 108 out of 593
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 18:34:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hg3_A Alpha-galactosidase A; 99.8 1.7E-22 5.9E-27 156.3 0.3 59 1-59 102-177 (404)
2 3lrk_A Alpha-galactosidase 1; 99.8 9.8E-20 3.4E-24 144.0 2.1 67 1-67 112-200 (479)
3 1uas_A Alpha-galactosidase; TI 99.6 5.4E-16 1.9E-20 115.3 3.1 67 1-67 92-176 (362)
4 4do4_A Alpha-N-acetylgalactosa 99.6 2.2E-16 7.6E-21 116.4 -0.3 45 1-45 101-146 (400)
5 3a5v_A Alpha-galactosidase; be 99.5 5.9E-15 2E-19 112.0 2.5 66 1-66 92-179 (397)
6 1szn_A Alpha-galactosidase; (b 99.4 1.1E-14 3.8E-19 111.4 0.7 41 1-41 95-135 (417)
7 3a21_A Putative secreted alpha 99.3 5.3E-14 1.8E-18 110.9 -2.0 67 1-67 95-194 (614)
8 3cc1_A BH1870 protein, putativ 98.5 3.7E-08 1.3E-12 75.3 3.0 32 12-43 158-189 (433)
9 4fnq_A Alpha-galactosidase AGA 97.6 2.9E-05 9.9E-10 62.9 3.3 33 10-42 449-482 (729)
10 3a24_A Alpha-galactosidase; gl 96.8 0.00023 7.7E-09 58.1 0.4 52 19-70 375-439 (641)
11 1zy9_A Alpha-galactosidase; TM 96.7 0.0004 1.4E-08 55.1 1.4 32 12-43 313-344 (564)
12 2xn2_A Alpha-galactosidase; hy 96.4 0.0024 8.2E-08 51.9 3.9 35 8-42 436-486 (732)
13 2yfo_A Alpha-galactosidase-suc 88.7 0.23 7.8E-06 40.4 2.6 16 25-40 465-480 (720)
14 3mi6_A Alpha-galactosidase; NE 58.3 4.4 0.00015 33.5 1.9 27 14-40 454-481 (745)
15 3s83_A Ggdef family protein; s 21.6 43 0.0015 22.3 1.7 20 22-41 165-184 (259)
16 4f3h_A Fimxeal, putative uncha 21.0 33 0.0011 22.9 1.0 21 22-42 169-189 (250)
17 1to3_A Putative aldolase YIHT; 20.5 44 0.0015 24.1 1.7 19 22-40 181-199 (304)
No 1
>3hg3_A Alpha-galactosidase A; glycoprotein, carbohydrate-binding protein, glycosidase, Lys enzyme, (beta/alpha)8 barrel, disease mutation; HET: NAG BMA MAN GLA GLC 2PE; 1.90A {Homo sapiens} PDB: 3tv8_A* 3lx9_A* 3lxa_A* 3lxb_A* 3lxc_A* 3s5z_A* 1r47_A* 1r46_A* 3gxn_A* 3gxt_A* 3hg2_A* 3hg4_A* 3hg5_A* 3gxp_A* 3s5y_A*
Probab=99.84 E-value=1.7e-22 Score=156.34 Aligned_cols=59 Identities=44% Similarity=1.008 Sum_probs=51.9
Q ss_pred CccCccccccCCCCCccchHHHhHHHHHhccccEEEeeCCCCCCCC-CCCcc----------------cCCCCCCC
Q psy1877 1 MYEDYGNYTCAGYPGILGYLERDAYSFAEWNVDYIKIDGCYSHPSD-MDRGK----------------TTSYPNYQ 59 (76)
Q Consensus 1 IYtd~G~~TC~g~pGS~ghe~~DA~~fA~WGvDylK~D~C~~~~~~-~~~~Y----------------sC~Wp~y~ 59 (76)
||+++|+.||+++|||++||++||++||+|||||||+|+|+.+..+ +.++| ||+||.|+
T Consensus 102 iw~~~g~~tC~~~pGs~~~~~~da~~fa~WGvDylK~D~C~~~~~~~~~~~y~~m~~AL~~tGRpi~~sc~w~~~~ 177 (404)
T 3hg3_A 102 IYADVGNKTCAGFPGSFGYYDIDAQTFADWGVDLLKFAGCYCDSLENLADGYKHMSLALNRTGRSIVYSCEWPLYM 177 (404)
T ss_dssp EEEESSSBCTTSSBCCTTCHHHHHHHHHHHTCCEEEEECCSCSCHHHHHHHHHHHHHHHHHTTCCCEEEECTGGGG
T ss_pred EEecCCccccCCCCccHHHHHHHHHHHHHhCCcEEEecCcCCCcchhHHHHHHHHHHHHHhcCCCEEEEeCCCccc
Confidence 6899999999999999999999999999999999999999986544 33344 99999765
No 2
>3lrk_A Alpha-galactosidase 1; tetramer, GH27, glycoprotein, glycosida hydrolase; HET: NAG BTB; 1.95A {Saccharomyces cerevisiae} PDB: 3lrl_A* 3lrm_A*
Probab=99.76 E-value=9.8e-20 Score=144.03 Aligned_cols=67 Identities=37% Similarity=0.564 Sum_probs=57.2
Q ss_pred CccCccccccCCCCCccchHHHhHHHHHhccccEEEeeCCCCCCCC-----CCCcc-----------------cCCCCCC
Q psy1877 1 MYEDYGNYTCAGYPGILGYLERDAYSFAEWNVDYIKIDGCYSHPSD-----MDRGK-----------------TTSYPNY 58 (76)
Q Consensus 1 IYtd~G~~TC~g~pGS~ghe~~DA~~fA~WGvDylK~D~C~~~~~~-----~~~~Y-----------------sC~Wp~y 58 (76)
||+++|..||+++|||++||++||++||+|||||||+|+|+.+... ..++| .|+||..
T Consensus 112 Iw~~pG~~tC~~~pGsl~~~~~da~~fa~WGVDylK~D~c~~~~~~~~~~~~~~~y~~m~~AL~~tGRpI~~Slc~Wg~~ 191 (479)
T 3lrk_A 112 MYSSAGEYTCAGYPGSLGREEEDAQFFANNRVDYLKYDNCYNKGQFGTPEISYHRYKAMSDALNKTGRPVFYSLCNWGQD 191 (479)
T ss_dssp EEEESSSBCTTSSBCCTTCHHHHHHHHHHTTCCEEEEECTTCTTCCSSHHHHHHHHHHHHHHHHHHCSCCEEEECSTTTT
T ss_pred EEecCccccccCCCchhHHHHHHHHHHHHhCCcEEEEccCCCccccCCcchhHHHHHHHHHHHHHhCCCeEEEeccCccC
Confidence 6899999999999999999999999999999999999999875332 11234 4999999
Q ss_pred CCCcccccc
Q psy1877 59 QISLTARLV 67 (76)
Q Consensus 59 ~~~~wa~~~ 67 (76)
.|+.|++.+
T Consensus 192 ~~~~w~~~~ 200 (479)
T 3lrk_A 192 LTFYWGSGI 200 (479)
T ss_dssp THHHHSTTT
T ss_pred chhhhhhhh
Confidence 999998654
No 3
>1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP: b.71.1.1 c.1.8.1
Probab=99.58 E-value=5.4e-16 Score=115.32 Aligned_cols=67 Identities=30% Similarity=0.511 Sum_probs=59.1
Q ss_pred CccCccccccC-CCCCccchHHHhHHHHHhccccEEEeeCCCCCCCCCCCcc-----------------cCCCCCCCCCc
Q psy1877 1 MYEDYGNYTCA-GYPGILGYLERDAYSFAEWNVDYIKIDGCYSHPSDMDRGK-----------------TTSYPNYQISL 62 (76)
Q Consensus 1 IYtd~G~~TC~-g~pGS~ghe~~DA~~fA~WGvDylK~D~C~~~~~~~~~~Y-----------------sC~Wp~y~~~~ 62 (76)
||.++|..+|. ++||+++||++|+++|++|||||||+|+|+.+..++...| +|+|+.+.|+.
T Consensus 92 iw~~~~~~~~~~~~pg~~~~~~~~~~~~~~wGvdyvK~D~~~~~~~~~~~~y~~~~~al~~~~~~i~~~~c~~g~~~p~~ 171 (362)
T 1uas_A 92 IYSDAGSQTCSNKMPGSLDHEEQDVKTFASWGVDYLKYDNCNDAGRSVMERYTRMSNAMKTYGKNIFFSLCEWGKENPAT 171 (362)
T ss_dssp EEEESSSBCTTSSSBCCTTCHHHHHHHHHHHTCCEEEEECCCCTTCCHHHHHHHHHHHHHHHCTTSEEEEESTTTTCGGG
T ss_pred EEeeCCCccccCCCCCchhHHHHHHHHHHHcCCCEEEECccCCCCCCHHHHHHHHHHHHHhhCCCcEEEecCCCCCChHH
Confidence 68889999999 9999999999999999999999999999998766554445 59999999999
Q ss_pred ccccc
Q psy1877 63 TARLV 67 (76)
Q Consensus 63 wa~~~ 67 (76)
|++.+
T Consensus 172 w~~~~ 176 (362)
T 1uas_A 172 WAGRM 176 (362)
T ss_dssp TGGGT
T ss_pred HHhhh
Confidence 98653
No 4
>4do4_A Alpha-N-acetylgalactosaminidase; pharmacological chaperone, (beta/alpha)8 barrel, glycosidase carbohydrate-binding protein, glycoprotein, lysosome; HET: NAG BMA MAN DJN CIT FUC; 1.40A {Homo sapiens} PDB: 3h54_A* 3h53_A* 3igu_A* 3h55_A* 4do5_A* 4do6_A* 1ktb_A* 1ktc_A*
Probab=99.56 E-value=2.2e-16 Score=116.36 Aligned_cols=45 Identities=56% Similarity=1.215 Sum_probs=41.9
Q ss_pred CccCccccccCCCCC-ccchHHHhHHHHHhccccEEEeeCCCCCCC
Q psy1877 1 MYEDYGNYTCAGYPG-ILGYLERDAYSFAEWNVDYIKIDGCYSHPS 45 (76)
Q Consensus 1 IYtd~G~~TC~g~pG-S~ghe~~DA~~fA~WGvDylK~D~C~~~~~ 45 (76)
||+++|..||+++|| |++||++||++||+|||||||+|+|+.+..
T Consensus 101 iy~~~~~~~c~g~~~~~~~~~~~da~~~a~wGvdylK~D~~~~~~~ 146 (400)
T 4do4_A 101 IYADMGNFTCMGYPGTTLDKVVQDAQTFAEWKVDMLKLDGCFSTPE 146 (400)
T ss_dssp EEEEBSSBCTTSCBCBCGGGHHHHHHHHHHTTCCEEEEECTTCCHH
T ss_pred EecCCCCcccCCCCchhHhHHHHHHHHHHHhCCceEeeccCcCChh
Confidence 689999999999987 999999999999999999999999987643
No 5
>3a5v_A Alpha-galactosidase; beta/alpha barrel, N-glycosylation, hydrolase; HET: MAN NAG BMA 1PG; 2.00A {Umbelopsis vinacea}
Probab=99.49 E-value=5.9e-15 Score=111.99 Aligned_cols=66 Identities=29% Similarity=0.508 Sum_probs=54.8
Q ss_pred CccCccccccCCCCCccchHHHhHHHHHhccccEEEeeCCCCCCCCC-----CCcc-----------------cCCCCCC
Q psy1877 1 MYEDYGNYTCAGYPGILGYLERDAYSFAEWNVDYIKIDGCYSHPSDM-----DRGK-----------------TTSYPNY 58 (76)
Q Consensus 1 IYtd~G~~TC~g~pGS~ghe~~DA~~fA~WGvDylK~D~C~~~~~~~-----~~~Y-----------------sC~Wp~y 58 (76)
||.++|..||+++||+++|+++|+++|++|||||||+|+|+...... ..+| .|+||..
T Consensus 92 iw~~pg~~tc~~~pg~~~~~~~~~~~~~~wGvdyvK~D~~~~~~~~~~~~~~~~~y~~m~~~L~~~~~~i~~~~c~~G~~ 171 (397)
T 3a5v_A 92 IYSSAGTLTCGGHIASLGYEDIDAKTWAKWGIDYLKYDNCYNQGQSGTPKLSYDRYKAMGNALNKTGRPMLYSLCNWGED 171 (397)
T ss_dssp EEEESSSBCTTSCBCCTTCHHHHHHHHHHHTCCEEEEECTTCTTCCSSHHHHHHHHHHHHHHHHHTCSCCEEEECSTTTT
T ss_pred EEecCCCCccCCCHHHHHHHHHHHHHHHHcCCCEEEECCCcCCCcCCCcchhHHHHHHHHHHHHhhCCCcEEEeccCCCC
Confidence 68889999999999999999999999999999999999998653211 1122 5999998
Q ss_pred CCCccccc
Q psy1877 59 QISLTARL 66 (76)
Q Consensus 59 ~~~~wa~~ 66 (76)
.++.|++.
T Consensus 172 ~~~~w~~~ 179 (397)
T 3a5v_A 172 GPWNFAST 179 (397)
T ss_dssp CHHHHSTT
T ss_pred chhhHHhh
Confidence 88888753
No 6
>1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains, glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A {Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A*
Probab=99.44 E-value=1.1e-14 Score=111.41 Aligned_cols=41 Identities=54% Similarity=1.097 Sum_probs=39.2
Q ss_pred CccCccccccCCCCCccchHHHhHHHHHhccccEEEeeCCC
Q psy1877 1 MYEDYGNYTCAGYPGILGYLERDAYSFAEWNVDYIKIDGCY 41 (76)
Q Consensus 1 IYtd~G~~TC~g~pGS~ghe~~DA~~fA~WGvDylK~D~C~ 41 (76)
||.+.|..+|.++|||++|+++|+++|++|||||||+|+|+
T Consensus 95 iw~~~g~~~c~~~Pgs~~~~~~d~~~~~~wGvdylK~D~~~ 135 (417)
T 1szn_A 95 IYSTAGTATCAGYPASLGYEDVDAADFADWGVDYLKYDNCN 135 (417)
T ss_dssp EEEESSSBCTTSCBCCTTCHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEeCCCCchhccCcchHhHHHHHHHHHHHcCCCEEEECCCC
Confidence 68889999999999999999999999999999999999993
No 7
>3a21_A Putative secreted alpha-galactosidase; beta-alpha-barrel, greek KEY motif, beta-jellyroll, beta-TRE hydrolase; HET: GOL 1PG EPE; 1.51A {Streptomyces avermitilis} PDB: 3a22_A* 3a23_A*
Probab=99.33 E-value=5.3e-14 Score=110.87 Aligned_cols=67 Identities=24% Similarity=0.419 Sum_probs=54.7
Q ss_pred CccCccccccC--------CCCC--ccchHHHhHHHHHhccccEEEeeCCCCCCC--CCCCcc-----------------
Q psy1877 1 MYEDYGNYTCA--------GYPG--ILGYLERDAYSFAEWNVDYIKIDGCYSHPS--DMDRGK----------------- 51 (76)
Q Consensus 1 IYtd~G~~TC~--------g~pG--S~ghe~~DA~~fA~WGvDylK~D~C~~~~~--~~~~~Y----------------- 51 (76)
||.++|..||+ ++|| |++|+++|+++|++|||||||+|+|+.... ++.++|
T Consensus 95 i~~~~~~~~~~~~~p~~~~~~pg~g~~~~~~~~~~~~~~wGvd~lK~D~~~~~~~~~~~~~~y~~~~~al~~~~~~~gr~ 174 (614)
T 3a21_A 95 IYTDAGKDGCGYYYPTGRPAAPGSGSEGHYDQDMLQFSTWGFDFVKVDWCGGDAEGLDAATTYKSISDAVGRAAATTGRP 174 (614)
T ss_dssp EEEESSSSCHHHHSCSSSCCCTTCSCTTCHHHHHHHHHHHTCSEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred EEecCCCccccccCCCCCCCCCchhhHHHHHHHHHHHHHcCCcEEEecccCCcccccchHHHHHHHHHHHHHHHHhcCCC
Confidence 68899999998 8999 999999999999999999999999976432 222333
Q ss_pred ----cCCCCCCCCCcccccc
Q psy1877 52 ----TTSYPNYQISLTARLV 67 (76)
Q Consensus 52 ----sC~Wp~y~~~~wa~~~ 67 (76)
.|+|+...++.|++.+
T Consensus 175 i~~s~c~~g~~~~~~~~~~~ 194 (614)
T 3a21_A 175 LTLSICNWGYQNPWNWAAGQ 194 (614)
T ss_dssp CEEEECCTTTTCGGGTCTTT
T ss_pred eEEEecCCccCChhhhhhcc
Confidence 4999998887776443
No 8
>3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase; structural genomic center for structural genomics, JCSG; HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans c-125}
Probab=98.53 E-value=3.7e-08 Score=75.31 Aligned_cols=32 Identities=25% Similarity=0.492 Sum_probs=29.5
Q ss_pred CCCCccchHHHhHHHHHhccccEEEeeCCCCC
Q psy1877 12 GYPGILGYLERDAYSFAEWNVDYIKIDGCYSH 43 (76)
Q Consensus 12 g~pGS~ghe~~DA~~fA~WGvDylK~D~C~~~ 43 (76)
..||+..|++.++++|++|||||||+|.|+..
T Consensus 158 ~~p~~~~~~~~~~~~l~~~GvDyvK~D~~~~~ 189 (433)
T 3cc1_A 158 TKEGAQSYYNSLFELYAQWGVDFVKVDDIAAS 189 (433)
T ss_dssp TSTTHHHHHHHHHHHHHHTTCCEEEEESCSCT
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEeCCcccc
Confidence 56899999999999999999999999999874
No 9
>4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A*
Probab=97.62 E-value=2.9e-05 Score=62.93 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=28.3
Q ss_pred cCCCCCccch-HHHhHHHHHhccccEEEeeCCCC
Q psy1877 10 CAGYPGILGY-LERDAYSFAEWNVDYIKIDGCYS 42 (76)
Q Consensus 10 C~g~pGS~gh-e~~DA~~fA~WGvDylK~D~C~~ 42 (76)
|.+.|+...| +++.++.|++|||||||+|+|..
T Consensus 449 D~~~P~v~~y~~~~i~~ll~~~GidYiK~D~n~~ 482 (729)
T 4fnq_A 449 DYSREDVCDYIIETISNVLASAPITYVKWDMNRH 482 (729)
T ss_dssp CTTSHHHHHHHHHHHHHHHTTTTCCEEEEECCCC
T ss_pred cCCChhHHHHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence 5567888888 57888999999999999999864
No 10
>3a24_A Alpha-galactosidase; glycoside hydrolase family 97, retaining glycosidase; HET: MES; 2.30A {Bacteroides thetaiotaomicron}
Probab=96.81 E-value=0.00023 Score=58.11 Aligned_cols=52 Identities=15% Similarity=-0.000 Sum_probs=42.7
Q ss_pred hHHHhHHHHHhccccEEEeeCCCCCCCCCCCcc-------------cCCCCCCCCCccccccccc
Q psy1877 19 YLERDAYSFAEWNVDYIKIDGCYSHPSDMDRGK-------------TTSYPNYQISLTARLVSLF 70 (76)
Q Consensus 19 he~~DA~~fA~WGvDylK~D~C~~~~~~~~~~Y-------------sC~Wp~y~~~~wa~~~~~~ 70 (76)
+.+.++++|++|||+.||+|.|..+...+.+.| .+-++.+.|.-|.|+-|-+
T Consensus 375 ~~~~~~~~~~~~Gv~gvK~Df~~~~~Q~~v~~y~~i~~~aA~~~l~V~fHg~~~P~Gl~RTyPN~ 439 (641)
T 3a24_A 375 DMENVCRHYAEMGVKGFKVDFMDRDDQEMTAFNYRAAEMCAKYKLILDLHGTHKPAGLNRTYPNV 439 (641)
T ss_dssp SHHHHHHHHHHHTCCEEEEECCCCCSHHHHHHHHHHHHHHHHTTCEEEECSCCCCTTHHHHCTTE
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHHHHcCCEEEcCCCcCCCcccccccch
Confidence 345599999999999999999977665555555 6899999999999988744
No 11
>1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13
Probab=96.74 E-value=0.0004 Score=55.08 Aligned_cols=32 Identities=22% Similarity=0.227 Sum_probs=28.5
Q ss_pred CCCCccchHHHhHHHHHhccccEEEeeCCCCC
Q psy1877 12 GYPGILGYLERDAYSFAEWNVDYIKIDGCYSH 43 (76)
Q Consensus 12 g~pGS~ghe~~DA~~fA~WGvDylK~D~C~~~ 43 (76)
..|++..|...++++|++|||||||+|.|...
T Consensus 313 t~P~a~~~~~~~~~~~~~~GVD~iK~D~~~~~ 344 (564)
T 1zy9_A 313 SKDEVLNWLFDLFSSLRKMGYRYFKIDFLFAG 344 (564)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCEEEECCGGGG
T ss_pred CCHHHHHHHHHHHHHHHhcCCCEEEEcCCCCc
Confidence 34788889999999999999999999999853
No 12
>2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD; 1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A* 2xn0_A*
Probab=96.41 E-value=0.0024 Score=51.95 Aligned_cols=35 Identities=23% Similarity=0.175 Sum_probs=26.8
Q ss_pred cccCCCCCccch----------------HHHhHHHHHhccccEEEeeCCCC
Q psy1877 8 YTCAGYPGILGY----------------LERDAYSFAEWNVDYIKIDGCYS 42 (76)
Q Consensus 8 ~TC~g~pGS~gh----------------e~~DA~~fA~WGvDylK~D~C~~ 42 (76)
.+|.+.++++++ .+..++.|++|||||||+|.|..
T Consensus 436 ~~~~g~~~~~~~~~~~LD~t~Pev~~~i~~~l~~~~~~~GVD~~K~D~~~~ 486 (732)
T 2xn2_A 436 XHVPGRKPCPSRNQYVLELGRKEVRDNIFEQMVKILDSKKIDYIKWDMNRS 486 (732)
T ss_dssp CCCTTSCCCCBTTBEEBCTTSHHHHHHHHHHHHHHHTTSCCCEEEECCCCC
T ss_pred ecCCCCCCccCCceEEEcCCCHHHHHHHHHHHHHHHHHcCCCEEEECCCcc
Confidence 366777777764 23347889999999999999963
No 13
>2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL; 1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A*
Probab=88.75 E-value=0.23 Score=40.38 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=14.2
Q ss_pred HHHHhccccEEEeeCC
Q psy1877 25 YSFAEWNVDYIKIDGC 40 (76)
Q Consensus 25 ~~fA~WGvDylK~D~C 40 (76)
+.+++|||||||+|..
T Consensus 465 ~l~~~~GIDy~K~D~n 480 (720)
T 2yfo_A 465 VVLDQGKIDYVKWDMN 480 (720)
T ss_dssp HHHTTSCCCEEEECCC
T ss_pred HHHHHcCCCEEEECCC
Confidence 5689999999999974
No 14
>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis}
Probab=58.34 E-value=4.4 Score=33.54 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=17.6
Q ss_pred CCccchHHHhH-HHHHhccccEEEeeCC
Q psy1877 14 PGILGYLERDA-YSFAEWNVDYIKIDGC 40 (76)
Q Consensus 14 pGS~ghe~~DA-~~fA~WGvDylK~D~C 40 (76)
|....|...-. +.+.+|||||+|.|..
T Consensus 454 Pevr~~i~~~l~~ll~~~GIDy~K~D~n 481 (745)
T 3mi6_A 454 PEVVDYLFKLMSQMIESANLDYIKWDMN 481 (745)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 33333433333 3578999999999964
No 15
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=21.62 E-value=43 Score=22.35 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=15.3
Q ss_pred HhHHHHHhccccEEEeeCCC
Q psy1877 22 RDAYSFAEWNVDYIKIDGCY 41 (76)
Q Consensus 22 ~DA~~fA~WGvDylK~D~C~ 41 (76)
.....+....+|+||+|.-.
T Consensus 165 ssl~~L~~l~~d~iKiD~~~ 184 (259)
T 3s83_A 165 SSLSYLTRLPFDTLKIDRYF 184 (259)
T ss_dssp HHHHHHHHSCCCEEEECHHH
T ss_pred hhHHHHHhCCCCEEEECHHH
Confidence 34566788899999999643
No 16
>4f3h_A Fimxeal, putative uncharacterized protein; fimxeal-C-DI-GMP, type IV pilus, signaling protein; HET: C2E; 2.50A {Xanthomonas campestris PV} PDB: 4f48_A*
Probab=21.00 E-value=33 Score=22.89 Aligned_cols=21 Identities=14% Similarity=0.312 Sum_probs=16.1
Q ss_pred HhHHHHHhccccEEEeeCCCC
Q psy1877 22 RDAYSFAEWNVDYIKIDGCYS 42 (76)
Q Consensus 22 ~DA~~fA~WGvDylK~D~C~~ 42 (76)
.....+....+|+||+|.-..
T Consensus 169 s~l~~L~~l~~d~iKiD~~~v 189 (250)
T 4f3h_A 169 DSFQLLAHFQPAFLKLDRSIT 189 (250)
T ss_dssp HHHHHHTTSCCSEEEECHHHH
T ss_pred hHHHHHhhCCCCEEEECHHHH
Confidence 345677888999999996544
No 17
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1
Probab=20.52 E-value=44 Score=24.15 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=15.7
Q ss_pred HhHHHHHhccccEEEeeCC
Q psy1877 22 RDAYSFAEWNVDYIKIDGC 40 (76)
Q Consensus 22 ~DA~~fA~WGvDylK~D~C 40 (76)
.-++.+++-|+||||+...
T Consensus 181 ~aa~~a~~lGaD~iKv~~~ 199 (304)
T 1to3_A 181 DAAKELGDSGADLYKVEMP 199 (304)
T ss_dssp HHHHHHTTSSCSEEEECCG
T ss_pred HHHHHHHHcCCCEEEeCCC
Confidence 3478899999999998763
Done!