RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1877
(76 letters)
>gnl|CDD|178295 PLN02692, PLN02692, alpha-galactosidase.
Length = 412
Score = 51.6 bits (123), Expect = 2e-09
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 1 MYEDYGNYTCAG-YPGILGYLERDAYSFAEWNVDYIKIDGCYSHPSDMDRGKTTSYP 56
+Y D G +TC+ PG LG+ E+DA +FA W +DY+K D C + S T YP
Sbjct: 139 IYSDAGYFTCSKTMPGSLGHEEQDAKTFASWGIDYLKYDNCNNDGSK----PTVRYP 191
>gnl|CDD|166449 PLN02808, PLN02808, alpha-galactosidase.
Length = 386
Score = 50.7 bits (121), Expect = 3e-09
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 1 MYEDYGNYTCAG-YPGILGYLERDAYSFAEWNVDYIKIDGC 40
+Y D G TC+ PG LG+ E+DA +FA W +DY+K D C
Sbjct: 115 IYSDAGTLTCSKTMPGSLGHEEQDAKTFASWGIDYLKYDNC 155
>gnl|CDD|177874 PLN02229, PLN02229, alpha-galactosidase.
Length = 427
Score = 46.5 bits (110), Expect = 1e-07
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 1 MYEDYGNYTCAGYPGILGYLERDAYSFAEWNVDYIKIDGCYS 42
+Y D G +TC PG L + DA FA W VDY+K D CY+
Sbjct: 146 IYSDAGVFTCQVRPGSLFHEVDDADIFASWGVDYLKYDNCYN 187
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 32.2 bits (74), Expect = 0.010
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 46 DMDRGKTTSYP-NYQISLTAR 65
D+DRGK SYP NY L +
Sbjct: 225 DLDRGKLVSYPGNYDQYLLEK 245
>gnl|CDD|223142 COG0064, GatB, Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit
(PET112 homolog) [Translation, ribosomal structure and
biogenesis].
Length = 483
Score = 27.2 bits (61), Expect = 0.75
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 15/63 (23%)
Query: 7 NYTCAGYPGILGYLERDAYSFAEWNVDYIK----IDGCYSHPSDMDRGKTTSYP----NY 58
C G PG L L ++A A IK ++ + S DR K YP Y
Sbjct: 42 CPVCLGLPGALPVLNKEAVEKA------IKAGLALNCEINEKSVFDR-KNYFYPDLPKGY 94
Query: 59 QIS 61
QIS
Sbjct: 95 QIS 97
>gnl|CDD|133123 cd06592, GH31_glucosidase_KIAA1161, KIAA1161 is an uncharacterized
Homo sapiens protein with a glycosyl hydrolase family 31
(GH31) domain that is homologous to the Escherichia coli
YihQ glucosidase. Orthologs of KIA1161 are found in
eukaryotes and prokaryotes. In bacteria, YihQ (along
with YihO) is important for bacterial O-antigen capsule
assembly and translocation. Enzymes of the GH31 family
possess a wide range of different hydrolytic activities
including alpha-glucosidase (glucoamylase and
sucrase-isomaltase), alpha-xylosidase,
6-alpha-glucosyltransferase,
3-alpha-isomaltosyltransferase and alpha-1,4-glucan
lyase. All GH31 enzymes cleave a terminal carbohydrate
moiety from a substrate that varies considerably in
size, depending on the enzyme, and may be either a
starch or a glycoprotein.
Length = 303
Score = 25.3 bits (56), Expect = 3.5
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 28 AEWNVDYIKIDG---CYSHPSDMDRGKTTSYPNYQISLTARLVSLFGS 72
++ +D K D Y P D P+ L A +V+ FG
Sbjct: 152 EKYGIDSFKFDAGEASYL-PQDYVTEDPLLNPDEYTRLYAEMVAEFGD 198
>gnl|CDD|235489 PRK05477, gatB, aspartyl/glutamyl-tRNA amidotransferase subunit
B; Validated.
Length = 474
Score = 25.0 bits (56), Expect = 4.0
Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 15/61 (24%)
Query: 9 TCAGYPGILGYLERDAYSFAEWNVDYIKID---GCYSHP-SDMDRGKTTSYP----NYQI 60
C G PG L L ++A +A IK C S DR K YP YQI
Sbjct: 42 VCLGLPGALPVLNKEAVEYA------IKAGLALNCEIAKRSRFDR-KNYFYPDLPKGYQI 94
Query: 61 S 61
S
Sbjct: 95 S 95
>gnl|CDD|223647 COG0574, PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate
dikinase [Carbohydrate transport and metabolism].
Length = 740
Score = 24.6 bits (54), Expect = 5.5
Identities = 8/46 (17%), Positives = 13/46 (28%), Gaps = 8/46 (17%)
Query: 2 YEDYGNYTC--------AGYPGILGYLERDAYSFAEWNVDYIKIDG 39
D G T G P ++G + + +DG
Sbjct: 389 VTDRGGMTSHAAIVARELGIPAVVGTGSATKILKTLKDGTIVTLDG 434
>gnl|CDD|218808 pfam05913, DUF871, Bacterial protein of unknown function
(DUF871). This family consists of several conserved
hypothetical proteins from bacteria and archaea. The
function of this family is unknown.
Length = 357
Score = 24.8 bits (55), Expect = 5.6
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 17 LGYLERDAYSFAEWNVDYIKID 38
LG D E V +++D
Sbjct: 74 LGISYDDLSFLKELGVTGLRLD 95
>gnl|CDD|213629 TIGR01489, DKMTPPase-SF, 2,3-diketo-5-methylthio-1-phosphopentane
phosphatase. This phosphatase is a member of the IB
subfamily (TIGR01488) of the haloacid dehalogenase (HAD)
superfamily of aspartate-nucleophile hydrolases. With
the exception of OMNI|NTL01BS01361 from B. subtilis and
GP|15024582 from Clostridium acetabutylicum, the members
of this group are all eukaryotic, spanning metazoa,
plants and fungi. The B. subtilus gene (YkrX, renamed
MtnX) is part of an operon for the conversion of
methylthioribose (MTR) to methionine. It works with the
enolase MtnW, a RuBisCO homolog. The combination of MtnW
and MtnX achieves the same overall reaction as the
enolase-phosphatase MtnC. The function of MtnX was shown
by Ashida, et al. (2003) to be
2,3-diketo-5-methylthio-1-phosphopentane phosphatase,
rather than 2,3-diketo-5-methylthio-1-phosphopentane
phosphatase as proposed earlier. See the Genome Property
for methionine salvage for more details. In eukaryotes,
methionine salvage from methylthioadenosine also occurs.
It seems reasonable that members of this family in
eukaryotes fulfill a similar role as in Bacillus. A more
specific, equivalog-level model is TIGR03333. Note that
a member of this family from S. cerevisiae is annotated
as a "probable membrane protein" due to a predicted
transmembrane helix. The region in question contains the
second of the three conserved HAD superfamily catalytic
motifs and thus, considering the fold of the HAD
catalytic domain, is unlikely to be a transmembrane
region in fact [Central intermediary metabolism, Other].
Length = 188
Score = 24.7 bits (54), Expect = 6.0
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 30 WNVDYIKIDGCYSHPSDMDRGK 51
V GC S P +GK
Sbjct: 131 HIVWPHHCHGCCSCPCGCCKGK 152
>gnl|CDD|234278 TIGR03606, non_repeat_PQQ, dehydrogenase, PQQ-dependent, s-GDH
family. PQQ, or pyrroloquinoline-quinone, serves as a
cofactor for a number of sugar and alcohol
dehydrogenases in a limited number of bacterial species.
Most characterized PQQ-dependent enzymes have multiple
repeats of a sequence region described by pfam01011 (PQQ
enzyme repeat), but this protein family in unusual in
lacking that repeat. Below the noise cutoff are related
proteins mostly from species that lack PQQ biosynthesis.
Length = 454
Score = 24.5 bits (53), Expect = 7.2
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 6 GNYTCAGYPGILGYLERDAYSFAEWN 31
GNY G+P + GY + Y +A ++
Sbjct: 263 GNY---GWPNVAGYKDDSGYVYANYS 285
>gnl|CDD|178487 PLN02899, PLN02899, alpha-galactosidase.
Length = 633
Score = 24.4 bits (53), Expect = 7.2
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 27 FAEWNVDYIKID 38
+AEW VD++K D
Sbjct: 204 YAEWGVDFVKHD 215
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.430
Gapped
Lambda K H
0.267 0.0805 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,869,888
Number of extensions: 288244
Number of successful extensions: 250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 13
Length of query: 76
Length of database: 10,937,602
Length adjustment: 46
Effective length of query: 30
Effective length of database: 8,897,318
Effective search space: 266919540
Effective search space used: 266919540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)