RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1877
         (76 letters)



>d1r46a2 c.1.8.1 (A:32-323) Melibiase {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 292

 Score = 49.4 bits (117), Expect = 2e-09
 Identities = 24/44 (54%), Positives = 30/44 (68%)

Query: 1   MYEDYGNYTCAGYPGILGYLERDAYSFAEWNVDYIKIDGCYSHP 44
           +Y D GN TCAG+PG  GY + DA +FA+W VD +K DGCY   
Sbjct: 102 IYADVGNKTCAGFPGSFGYYDIDAQTFADWGVDLLKFDGCYCDS 145


>d1szna2 c.1.8.1 (A:1-314) Melibiase {Trichoderma reesei [TaxId:
           51453]}
          Length = 314

 Score = 42.6 bits (99), Expect = 5e-07
 Identities = 23/48 (47%), Positives = 27/48 (56%)

Query: 1   MYEDYGNYTCAGYPGILGYLERDAYSFAEWNVDYIKIDGCYSHPSDMD 48
           +Y   G  TCAGYP  LGY + DA  FA+W VDY+K D C       D
Sbjct: 95  IYSTAGTATCAGYPASLGYEDVDAADFADWGVDYLKYDNCNVPSDWQD 142


>d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic
           domain {Thermotoga maritima [TaxId: 2336]}
          Length = 348

 Score = 41.7 bits (97), Expect = 1e-06
 Identities = 9/55 (16%), Positives = 17/55 (30%)

Query: 1   MYEDYGNYTCAGYPGILGYLERDAYSFAEWNVDYIKIDGCYSHPSDMDRGKTTSY 55
            +             +L +L     S  +    Y KID  ++     +R K  + 
Sbjct: 113 NWNKKIYALDLSKDEVLNWLFDLFSSLRKMGYRYFKIDFLFAGAVPGERKKNITP 167


>d1uasa2 c.1.8.1 (A:1-273) Melibiase {Rice (Oryza sativa) [TaxId:
           4530]}
          Length = 273

 Score = 41.3 bits (96), Expect = 2e-06
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 1   MYEDYGNYTCAG-YPGILGYLERDAYSFAEWNVDYIKIDGCYSHPSDMDRG 50
           +Y D G+ TC+   PG L + E+D  +FA W VDY+K D C      +   
Sbjct: 92  IYSDAGSQTCSNKMPGSLDHEEQDVKTFASWGVDYLKYDNCNDAGRSVMER 142


>d1ktba2 c.1.8.1 (A:1-293) Melibiase {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 293

 Score = 38.7 bits (89), Expect = 1e-05
 Identities = 26/51 (50%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 1   MYEDYGNYTCAGYPG-ILGYLERDAYSFAEWNVDYIKIDGCYSHPSDMDRG 50
           +Y D G  TC GYPG  L  +E+DA +FAEW VD +K+DGCYS   +  +G
Sbjct: 102 IYGDLGRLTCGGYPGTTLDRVEQDAQTFAEWGVDMLKLDGCYSSGKEQAQG 152


>d2f2ab2 d.128.1.5 (B:4-293) Aspartyl/glutamyl-tRNA(Asn/Gln)
          amidotransferase subunit B, GatB, N-terminal domain
          {Staphylococcus aureus [TaxId: 1280]}
          Length = 290

 Score = 25.3 bits (55), Expect = 0.66
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 9/60 (15%)

Query: 7  NYTCAGYPGILGYLERDAYSFAEWNVDYIKIDGCYSHP-SDMDRGKTTSYP----NYQIS 61
          N     YPG+L  + + A  +A   +             S  DR K   YP     YQIS
Sbjct: 35 NVIDLAYPGVLPVVNKRAVDWA---MRAAMALNMEIATESKFDR-KNYFYPDNPKAYQIS 90


>d1fn9a_ d.196.1.1 (A:) Outer capsid protein sigma 3 {Reovirus
          [TaxId: 10891]}
          Length = 365

 Score = 23.8 bits (51), Expect = 2.8
 Identities = 6/22 (27%), Positives = 9/22 (40%)

Query: 6  GNYTCAGYPGILGYLERDAYSF 27
          G   C    G++G L+R     
Sbjct: 47 GAVVCMHCLGVVGSLQRKLKHL 68


>d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain
           {Bacillus cereus [TaxId: 1396]}
          Length = 244

 Score = 22.4 bits (48), Expect = 8.3
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 17  LGYLERDAYSFAEWNVDYIKIDGCYSH 43
           LG    D   FAE   D I++D  +  
Sbjct: 78  LGISYSDLSFFAELGADGIRLDVGFDG 104


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0581    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 307,521
Number of extensions: 12084
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 9
Length of query: 76
Length of database: 2,407,596
Length adjustment: 43
Effective length of query: 33
Effective length of database: 1,817,206
Effective search space: 59967798
Effective search space used: 59967798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)