BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1878
(98 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q90744|NAGAB_CHICK Alpha-N-acetylgalactosaminidase OS=Gallus gallus GN=NAGA PE=1 SV=1
Length = 405
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 51/72 (70%), Gaps = 7/72 (9%)
Query: 25 IGYTC-----QAYLIP--NFTSIIEHCNLWRNFDDIQDSWQSLESIIDYYGNNQDTIVPN 77
I Y+C Q L P N+T + E CNLWRN+DDIQDSW S+ SI+D++ NQD + P
Sbjct: 167 IVYSCSWPAYQGGLPPKVNYTLLGEICNLWRNYDDIQDSWDSVLSIVDWFFTNQDVLQPF 226
Query: 78 AGPGHWNDPDMV 89
AGPGHWNDPDM+
Sbjct: 227 AGPGHWNDPDML 238
>sp|Q58DH9|NAGAB_BOVIN Alpha-N-acetylgalactosaminidase OS=Bos taurus GN=NAGA PE=2 SV=1
Length = 411
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 45/54 (83%)
Query: 36 NFTSIIEHCNLWRNFDDIQDSWQSLESIIDYYGNNQDTIVPNAGPGHWNDPDMV 89
N+T + + CNLWRNFDDIQDSW+S+ S++D++ +QD + P AGPGHWNDPDM+
Sbjct: 201 NYTLLADICNLWRNFDDIQDSWRSVLSVLDWFVTHQDVLQPIAGPGHWNDPDML 254
>sp|Q9QWR8|NAGAB_MOUSE Alpha-N-acetylgalactosaminidase OS=Mus musculus GN=Naga PE=2 SV=2
Length = 415
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 43/54 (79%)
Query: 36 NFTSIIEHCNLWRNFDDIQDSWQSLESIIDYYGNNQDTIVPNAGPGHWNDPDMV 89
N+T + CNLWRN+ DIQDSW+S+ SI+D++ +QD + P AGPGHWNDPDM+
Sbjct: 201 NYTEVSRVCNLWRNYKDIQDSWKSVLSILDWFVRHQDVLQPVAGPGHWNDPDML 254
>sp|Q66H12|NAGAB_RAT Alpha-N-acetylgalactosaminidase OS=Rattus norvegicus GN=Naga PE=2
SV=1
Length = 415
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 43/54 (79%)
Query: 36 NFTSIIEHCNLWRNFDDIQDSWQSLESIIDYYGNNQDTIVPNAGPGHWNDPDMV 89
N+T + CNLWRN+ DIQDSW+S+ SI+D++ +QD + P +GPGHWNDPDM+
Sbjct: 201 NYTEVAGTCNLWRNYKDIQDSWKSVLSILDWFVKHQDILQPVSGPGHWNDPDML 254
>sp|P06280|AGAL_HUMAN Alpha-galactosidase A OS=Homo sapiens GN=GLA PE=1 SV=1
Length = 429
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 49/71 (69%), Gaps = 6/71 (8%)
Query: 25 IGYTCQ------AYLIPNFTSIIEHCNLWRNFDDIQDSWQSLESIIDYYGNNQDTIVPNA 78
I Y+C+ + PN+T I ++CN WRNF DI DSW+S++SI+D+ NQ+ IV A
Sbjct: 198 IVYSCEWPLYMWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIKSILDWTSFNQERIVDVA 257
Query: 79 GPGHWNDPDMV 89
GPG WNDPDM+
Sbjct: 258 GPGGWNDPDML 268
>sp|P17050|NAGAB_HUMAN Alpha-N-acetylgalactosaminidase OS=Homo sapiens GN=NAGA PE=1 SV=2
Length = 411
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 44/54 (81%)
Query: 36 NFTSIIEHCNLWRNFDDIQDSWQSLESIIDYYGNNQDTIVPNAGPGHWNDPDMV 89
N++ + + CNLWRN+DDIQDSW S+ SI++++ +QD + P AGPGHWNDPDM+
Sbjct: 201 NYSLLADICNLWRNYDDIQDSWWSVLSILNWFVEHQDILQPVAGPGHWNDPDML 254
>sp|P51569|AGAL_MOUSE Alpha-galactosidase A OS=Mus musculus GN=Gla PE=1 SV=1
Length = 419
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 40/55 (72%)
Query: 35 PNFTSIIEHCNLWRNFDDIQDSWQSLESIIDYYGNNQDTIVPNAGPGHWNDPDMV 89
PN+T I +CN WRNFDD+ DSW+S+++I+ + Q IV AGPG WNDPDM+
Sbjct: 214 PNYTDIQYYCNHWRNFDDVYDSWESIKNILSWTVVYQKEIVEVAGPGSWNDPDML 268
>sp|P14749|AGAL_CYATE Alpha-galactosidase OS=Cyamopsis tetragonoloba PE=1 SV=1
Length = 411
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 45 NLWRNFDDIQDSWQSLESIIDYYGNNQDTIVPNAGPGHWNDPDMVK 90
N WR DI+D+W S+ SI D + D AGPG WNDPDM++
Sbjct: 225 NSWRTTGDIEDNWNSMTSIAD----SNDKWASYAGPGGWNDPDMLE 266
>sp|Q42656|AGAL_COFAR Alpha-galactosidase OS=Coffea arabica PE=1 SV=1
Length = 378
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 45 NLWRNFDDIQDSWQSLESIIDYYGNNQDTIVPNAGPGHWNDPDMVK 90
N WR DI DSW S+ S D D AGPG WNDPDM++
Sbjct: 193 NSWRTTGDIDDSWSSMTSRADM----NDKWASYAGPGGWNDPDMLE 234
>sp|Q9FXT4|AGAL_ORYSJ Alpha-galactosidase OS=Oryza sativa subsp. japonica GN=Os10g0493600
PE=1 SV=1
Length = 417
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 45 NLWRNFDDIQDSWQSLESIIDYYGNNQDTIVPNAGPGHWNDPDMVK 90
N WR DI D+W S+ S D D AGPG WNDPDM++
Sbjct: 233 NSWRTTGDIADNWGSMTSRAD----ENDQWAAYAGPGGWNDPDMLE 274
>sp|A4DA70|AGALD_ASPFU Probable alpha-galactosidase D OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=aglD PE=3
SV=2
Length = 648
Score = 32.3 bits (72), Expect = 0.81, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 45 NLWRNFDDIQDSWQSLESIIDYYGNNQDTIVPNAGPGHWNDPDMV 89
N WR +DI +W+S+ ++ N D AGPG W D DM+
Sbjct: 214 NSWRIGNDIIPAWRSIFRTLNQAVPNTDF----AGPGQWADLDML 254
>sp|B0YEK2|AGALD_ASPFC Probable alpha-galactosidase D OS=Neosartorya fumigata (strain
CEA10 / CBS 144.89 / FGSC A1163) GN=aglD PE=3 SV=2
Length = 648
Score = 32.3 bits (72), Expect = 0.81, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 45 NLWRNFDDIQDSWQSLESIIDYYGNNQDTIVPNAGPGHWNDPDMV 89
N WR +DI +W+S+ ++ N D AGPG W D DM+
Sbjct: 214 NSWRIGNDIIPAWRSIFRTLNQAVPNTDF----AGPGQWADLDML 254
>sp|Q6KI35|KAD_MYCMO Adenylate kinase OS=Mycoplasma mobile (strain ATCC 43663 / 163K /
NCTC 11711) GN=adk PE=3 SV=1
Length = 217
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 17/84 (20%)
Query: 5 ISFKTICPV--AIGQLTYQVDLIGYTCQAYLIPNFTSIIEHCNLWRNFDDIQDSW----- 57
+SF+ ICP+ +I L Y G C+ +L N T I DD ++S
Sbjct: 123 LSFRRICPICKSIYHLKYNPSKKGEFCENHL-ENLTKI------EARQDDSEESIKKRLK 175
Query: 58 ---QSLESIIDYYGNNQDTIVPNA 78
+ + +IDYY NQ +V N+
Sbjct: 176 IYNEETKPMIDYYKKNQSLVVINS 199
>sp|Q0STR4|MUTS_CLOPS DNA mismatch repair protein MutS OS=Clostridium perfringens (strain
SM101 / Type A) GN=mutS PE=3 SV=1
Length = 910
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 23 DLIGYTCQAYLIPNFTSIIEHC------NLWRNFDDIQDSWQSLESII 64
DLI IPN IIE+C N N DD++D ++ LE I
Sbjct: 362 DLIALKTSIGKIPNVKGIIENCTSSLLKNYHHNLDDLRDIYELLEKSI 409
>sp|Q8XL87|MUTS_CLOPE DNA mismatch repair protein MutS OS=Clostridium perfringens (strain
13 / Type A) GN=mutS PE=3 SV=1
Length = 909
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 23 DLIGYTCQAYLIPNFTSIIEHC------NLWRNFDDIQDSWQSLESII 64
DLI IPN IIE+C N N DD++D ++ LE I
Sbjct: 362 DLIALKTSIGKIPNVKGIIENCTSSLLRNYHHNLDDLRDIYELLEKSI 409
>sp|Q55B10|AGAL_DICDI Probable alpha-galactosidase OS=Dictyostelium discoideum GN=melA
PE=3 SV=1
Length = 385
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 45 NLWRNFDDIQDSWQSLESIIDYYGNNQDTIVPNAGPGHWNDPDMV 89
N WR DI+D+W S+ S + Q I +G G +NDPDM+
Sbjct: 195 NSWRTTPDIKDNWDSMLSNL----MAQAPITSFSGIGGFNDPDMM 235
>sp|A1D9S3|AGALD_NEOFI Probable alpha-galactosidase D OS=Neosartorya fischeri (strain ATCC
1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=aglD PE=3
SV=1
Length = 648
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 47 WRNFDDIQDSWQSLESIIDYYGNNQDTIVPNAGPGHWNDPDMV 89
WR +DI W+S+ ++ N D AGPG W D DM+
Sbjct: 216 WRIGNDIIPEWRSIFRTLNQAVPNTDF----AGPGQWADLDML 254
>sp|A2R2S6|AGALD_ASPNC Probable alpha-galactosidase D OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=aglD PE=3 SV=2
Length = 660
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 36 NFTSIIEHCNLWRNFDDIQDSWQSLESIIDYYGNNQDTIVPNAGPGHWNDPDMVK 90
N+ + H WR +DI W+++ II+ D AGPG W D DM++
Sbjct: 208 NWAPALGHS--WRIGNDIIPDWRTIFRIINQAAPQTDV----AGPGQWPDLDMLE 256
>sp|Q0TRD6|MUTS_CLOP1 DNA mismatch repair protein MutS OS=Clostridium perfringens (strain
ATCC 13124 / NCTC 8237 / Type A) GN=mutS PE=3 SV=1
Length = 910
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 23 DLIGYTCQAYLIPNFTSIIEHC------NLWRNFDDIQDSWQSLESII 64
DLI IPN IIE+C N N DD++D + LE I
Sbjct: 362 DLIALKTSIGKIPNVKGIIENCTSSLLKNYHHNLDDLRDIYDLLEKSI 409
>sp|Q9JIB3|BIR1G_MOUSE Baculoviral IAP repeat-containing protein 1g OS=Mus musculus
GN=Naip7 PE=4 SV=1
Length = 1402
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 37 FTSIIEHCNLWR-NFDDIQDSWQSLESIIDYYGNNQDTIVPNAGPGHWN 84
+TS EH + WR NF QD E II Y N +P+ G+WN
Sbjct: 950 YTSAFEHVSEWRRNF--AQD-----EEIIKNYENIWPRALPDISEGYWN 991
>sp|Q9JIB6|BIR1F_MOUSE Baculoviral IAP repeat-containing protein 1f OS=Mus musculus
GN=Naip6 PE=1 SV=2
Length = 1403
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 37 FTSIIEHCNLWR-NFDDIQDSWQSLESIIDYYGNNQDTIVPNAGPGHWN 84
+TS EH + WR NF QD E II Y N +P+ G+WN
Sbjct: 950 YTSAFEHVSEWRRNF--AQD-----EEIIKNYENIWPRALPDISEGYWN 991
>sp|Q6PCQ0|IQCE_MOUSE IQ domain-containing protein E OS=Mus musculus GN=Iqce PE=2 SV=1
Length = 778
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 45 NLWRNFDDIQDSWQSLESIIDYYGNNQDTIVPNAGPGHWNDPDMVKSYLDYDYK 98
NL R+ ++ + QSL+ +D +N TI G G W+ P +++ + + K
Sbjct: 296 NLTRSVQELTEENQSLKEDLDRMLSNSPTISKIKGYGDWSKPRLLRRIAELEKK 349
>sp|B3PGJ1|AGAL_CELJU Alpha-galactosidase A OS=Cellvibrio japonicus (strain Ueda107)
GN=agaA PE=1 SV=1
Length = 404
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 47 WRNFDDIQDSWQSLESIIDYYG-------NNQDTIVPNAGPGHWNDPDMVK 90
WR DI W + + + Q + AGPGHWND DM++
Sbjct: 202 WRTTGDIYPCWNCEHNHGSWSSFGVLPILDKQAGLRKYAGPGHWNDMDMME 252
>sp|Q9LN49|KCS4_ARATH 3-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana GN=KCS4 PE=2 SV=1
Length = 516
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 20 YQVDLIGYTCQAYLIPNFTSIIEHCNLWRNFDDIQDSWQSLESIIDYYGNNQDTIVPNA 78
Y VD Y +L + +EH L +FDD +Q I++ G +DT VP A
Sbjct: 113 YLVDFSCYLPPDHLKAPYARFMEHSRLTGDFDDSALEFQ--RKILERSGLGEDTYVPEA 169
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.140 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,047,384
Number of Sequences: 539616
Number of extensions: 1684913
Number of successful extensions: 3444
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3425
Number of HSP's gapped (non-prelim): 25
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)