RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1878
(98 letters)
>d1ktba2 c.1.8.1 (A:1-293) Melibiase {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 293
Score = 53.3 bits (127), Expect = 2e-10
Identities = 35/54 (64%), Positives = 43/54 (79%)
Query: 35 PNFTSIIEHCNLWRNFDDIQDSWQSLESIIDYYGNNQDTIVPNAGPGHWNDPDM 88
N+T + E CNLWRN+DDIQDSW S+ SI+D++ NQD + P AGPGHWNDPDM
Sbjct: 184 VNYTLLGEICNLWRNYDDIQDSWDSVLSIVDWFFTNQDVLQPFAGPGHWNDPDM 237
>d1r46a2 c.1.8.1 (A:32-323) Melibiase {Human (Homo sapiens) [TaxId:
9606]}
Length = 292
Score = 52.5 bits (125), Expect = 3e-10
Identities = 33/54 (61%), Positives = 42/54 (77%)
Query: 35 PNFTSIIEHCNLWRNFDDIQDSWQSLESIIDYYGNNQDTIVPNAGPGHWNDPDM 88
PN+T I ++CN WRNF DI DSW+S++SI+D+ NQ+ IV AGPG WNDPDM
Sbjct: 183 PNYTEIRQYCNHWRNFADIDDSWKSIKSILDWTSFNQERIVDVAGPGGWNDPDM 236
>d1zy9a2 c.1.8.13 (A:178-525) Alpha-galactosidase GalA catalytic
domain {Thermotoga maritima [TaxId: 2336]}
Length = 348
Score = 46.3 bits (109), Expect = 7e-08
Identities = 9/58 (15%), Positives = 13/58 (22%), Gaps = 5/58 (8%)
Query: 37 FTSIIEHCNLWRNFDDIQDSWQSLES-----IIDYYGNNQDTIVPNAGPGHWNDPDMV 89
+ + R D W + N T NDPD +
Sbjct: 195 LLPAVGCVDGMRIGPDTAPFWGEHIEDNGAPAARWALRNAITRYFMHDRFWLNDPDCL 252
>d1szna2 c.1.8.1 (A:1-314) Melibiase {Trichoderma reesei [TaxId:
51453]}
Length = 314
Score = 43.7 bits (102), Expect = 6e-07
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 23 DLIGYTCQAYLIPNFTSIIEHCNLWRNFDDIQDSWQSLESIIDYYGNNQDTIVPNAGPGH 82
+++ C F+ WR DDI +W S+ I++ + +
Sbjct: 197 EIVLSMCIWGQADVFSWGNSTGISWRMSDDISPNWGSVTRILNL----NSFKLNSVDFWG 252
Query: 83 WNDPDMV 89
ND DM+
Sbjct: 253 HNDADML 259
>d1uasa2 c.1.8.1 (A:1-273) Melibiase {Rice (Oryza sativa) [TaxId:
4530]}
Length = 273
Score = 38.6 bits (89), Expect = 3e-05
Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 29 CQAYLIPNFTSIIEHCNLWRNFDDIQDSWQSLESIIDYYGNNQDTIVPNAGPGHWNDPDM 88
C+ T N WR DI D+W S+ S D D AGPG WNDPDM
Sbjct: 162 CEWGKENPATWAGRMGNSWRTTGDIADNWGSMTSRAD----ENDQWAAYAGPGGWNDPDM 217
>d2dy7a1 b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 81
Score = 24.4 bits (53), Expect = 1.3
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 47 WRNFDDIQDSWQSLESIIDYYG 68
W + + ++W++ ESI G
Sbjct: 46 WTDESHLHNTWETYESIGQVRG 67
>d1v54f_ g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow (Bos
taurus) [TaxId: 9913]}
Length = 98
Score = 24.3 bits (53), Expect = 1.7
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 72 DTIVPNAGPGHWNDPDMVKSYLDYDY 97
+ + P A G DP++V S +
Sbjct: 32 NILAPKATSGTKEDPNLVPSITNKRI 57
>d3e9oa1 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8, Prp8
{Saccharomyces cerevisiae [TaxId: 4932]}
Length = 253
Score = 24.0 bits (52), Expect = 3.4
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 33 LIPNFTSIIEHCNLWRNFDDIQDSWQSLES-----IIDYYGNN 70
L+ + T I+ +LW +F D Q W ++ES I+ YG
Sbjct: 192 LLSDPTITIKSYHLWPSFTDEQ--WITIESQMRDLILTEYGRK 232
>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer
flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 380
Score = 23.7 bits (50), Expect = 5.0
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 70 NQDTIVPNAGPGHWNDPDMVKSYLDYD 96
TI P W +M + + D
Sbjct: 8 THYTIYPRDQDKRWEGVNMERFAEEAD 34
>d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 69
Score = 22.9 bits (49), Expect = 5.1
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 47 WRNFDDIQDSWQSLESIID 65
WR + + +W++ I+
Sbjct: 33 WRRLNYDEATWENATDIVK 51
>d1g6za_ b.34.13.2 (A:) Histone methyltransferase clr4, chromo
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 70
Score = 22.8 bits (49), Expect = 5.2
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 47 WRNFDDIQDSWQSLESIID 65
W N+ D+W+ E++
Sbjct: 32 WLNYSSRSDTWEPPENLSG 50
>d1j5ya2 d.94.2.1 (A:68-174) Putative transcriptional regulator
TM1602, C-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 107
Score = 23.0 bits (50), Expect = 5.6
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 51 DDIQDSWQSLESIIDYYGNNQDTIVPNAGPGHWNDPDMVKSYLDYD 96
++I++ L ++ G D IV + G V S +
Sbjct: 15 EEIKEE---LLCVVRNGGRIVDVIVEHPVYGEIRGIIDVSSEEEVL 57
>d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform
{Human (Homo sapiens) [TaxId: 9606]}
Length = 66
Score = 22.4 bits (48), Expect = 6.9
Identities = 4/19 (21%), Positives = 12/19 (63%)
Query: 47 WRNFDDIQDSWQSLESIID 65
W+ +D D+W+ + +++
Sbjct: 29 WKGYDSEDDTWEPEQHLVN 47
>d2b2ya2 b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 (Chromo
domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 22.6 bits (48), Expect = 9.1
Identities = 4/20 (20%), Positives = 12/20 (60%)
Query: 47 WRNFDDIQDSWQSLESIIDY 66
W+ + I ++W++ E++
Sbjct: 52 WKGWSHIHNTWETEETLKQQ 71
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.140 0.460
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 430,925
Number of extensions: 18420
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 23
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)