BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1880
(81 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|B Chain B, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|C Chain C, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
Length = 102
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
MT+ MQ I A + L K N K I+ H +EF+R++ P WHCVVG +G+ V+ + +
Sbjct: 26 MTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKN 85
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G +ILLFK
Sbjct: 86 FIYFYIGQVAILLFK 100
>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
pdb|1CMI|B Chain B, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
Length = 85
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M++ MQ ++ A + L K N K I+ H +EF++++ P WHC+VG +G+ V+ +
Sbjct: 9 MSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 68
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G +ILLFK
Sbjct: 69 FIYFYLGQVAILLFK 83
>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F3C|B Chain B, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F95|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Bim Peptide Complex
pdb|1F95|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Bim Peptide Complex
pdb|1F96|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Nnos Peptide Complex
pdb|1F96|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And
Nnos Peptide Complex
Length = 89
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M++ MQ ++ A + L K N K I+ H +EF++++ P WHC+VG +G+ V+ +
Sbjct: 13 MSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87
>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|B Chain B, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|C Chain C, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|D Chain D, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|3DVT|A Chain A, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|B Chain B, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|C Chain C, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|D Chain D, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|E Chain E, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|F Chain F, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
Length = 91
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M++ MQ + A + L K N K I+ + +EF++++ P WHC+VG +G+ V+ +
Sbjct: 15 MSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRH 74
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G +ILLFK
Sbjct: 75 FIYFYLGQVAILLFK 89
>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA
Length = 89
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M++ MQ + A + L K N K I+ + +EF++++ P WHC+VG +G+ V+ +
Sbjct: 13 MSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRH 72
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87
>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of
Dynein Light Chain Lc8 From Drosophila
pdb|2P2T|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 Bound To
Residues 123-138 Of Intermediate Chain Ic74
pdb|3E2B|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 In Complex
With A Peptide Derived From Swallow
pdb|3BRI|A Chain A, Crystal Structure Of Apo-Lc8
pdb|3FM7|E Chain E, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3FM7|F Chain F, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3GLW|A Chain A, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
Length = 89
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M++ MQ + A + L K N K I+ + +EF++++ P WHC+VG +G+ V+ +
Sbjct: 13 MSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRH 72
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87
>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
pdb|2XQQ|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|C Chain C, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|D Chain D, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte)
Length = 89
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M++ MQ + A + + K N K I+ + +EF++++ P WHC+VG +G+ V+ +
Sbjct: 13 MSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87
>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
pdb|3P8M|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
Length = 92
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M++ MQ + A + + K N K I+ + +EF++++ P WHC+VG +G+ V+ +
Sbjct: 16 MSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 75
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G +ILLFK
Sbjct: 76 FIYFYLGQVAILLFK 90
>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their
Pro- Apoptotic Ligands
pdb|1RE6|B Chain B, Localisation Of Dynein Light Chains 1 And 2 And Their
Pro- Apoptotic Ligands
Length = 94
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M++ MQ + A + + K N K I+ + +EF++++ P WHC+VG +G+ V+ +
Sbjct: 18 MSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 77
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G +ILLFK
Sbjct: 78 FIYFYLGQVAILLFK 92
>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p
pdb|3DVH|B Chain B, Lc8 Point Mutant K36p
pdb|3DVH|C Chain C, Lc8 Point Mutant K36p
pdb|3DVP|A Chain A, Pak1 Peptide Bound Lc8
pdb|3DVP|B Chain B, Pak1 Peptide Bound Lc8
Length = 91
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M++ MQ + A + L K N I+ + +EF++++ P WHC+VG +G+ V+ +
Sbjct: 15 MSEEMQQDAVDCATQALEKYNIEPDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRH 74
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G +ILLFK
Sbjct: 75 FIYFYLGQVAILLFK 89
>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From
Toxoplasma Gondii At 1.5 A Resolution
Length = 89
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M + +Q I A + L K N K I+ +EF+R+ P WHCVVG +G+ V+ +
Sbjct: 13 MPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHH 72
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G ++LLFK
Sbjct: 73 FIYFYIGQVAVLLFK 87
>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
Length = 91
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 2/77 (2%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHC--YGACVSFQK 58
M++ MQ + A + + K N K I+ + +EF++++ P WHC+VG +G+ V+ +
Sbjct: 13 MSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRSGNFGSYVTHET 72
Query: 59 GSFMYLSMGPFSILLFK 75
F+Y +G +ILLFK
Sbjct: 73 KHFIYFYLGQVAILLFK 89
>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
pdb|4DS1|C Chain C, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
Length = 97
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 42/75 (56%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
+T ++ + +++ L K + I+ ++ + ++ WH +VG +G+ V+ +KG
Sbjct: 21 ITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGH 80
Query: 61 FMYLSMGPFSILLFK 75
F+Y +GP + L+FK
Sbjct: 81 FVYFYIGPLAFLVFK 95
>pdb|1XKT|A Chain A, Human Fatty Acid Synthase: Structure And Substrate
Selectivity Of The Thioesterase Domain
pdb|1XKT|B Chain B, Human Fatty Acid Synthase: Structure And Substrate
Selectivity Of The Thioesterase Domain
Length = 289
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 36 RQFKPNW-HCVVGHCYGACVSFQKGSFMYLSMGP 68
RQ +P + V G+ YGACV+F+ S + P
Sbjct: 81 RQVQPEGPYRVAGYSYGACVAFEMCSQLQAQQSP 114
>pdb|2PX6|A Chain A, Crystal Structure Of The Thioesterase Domain Of Human
Fatty Acid Synthase Inhibited By Orlistat
pdb|2PX6|B Chain B, Crystal Structure Of The Thioesterase Domain Of Human
Fatty Acid Synthase Inhibited By Orlistat
Length = 316
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 36 RQFKPNW-HCVVGHCYGACVSFQKGSFMYLSMGP 68
RQ +P + V G+ YGACV+F+ S + P
Sbjct: 99 RQVQPEGPYRVAGYSYGACVAFEMCSQLQAQQSP 132
>pdb|3TJM|A Chain A, Crystal Structure Of The Human Fatty Acid Synthase
Thioesterase Domain With An Activate Site-Specific
Polyunsaturated Fatty Acyl Adduct
Length = 283
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 36 RQFKPNW-HCVVGHCYGACVSFQKGSFMYLSMGP 68
RQ +P + V G+ YGACV+F+ S + P
Sbjct: 77 RQVQPEGPYRVAGYSYGACVAFEMCSQLQAQQSP 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.138 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,211,107
Number of Sequences: 62578
Number of extensions: 70355
Number of successful extensions: 148
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 131
Number of HSP's gapped (non-prelim): 16
length of query: 81
length of database: 14,973,337
effective HSP length: 50
effective length of query: 31
effective length of database: 11,844,437
effective search space: 367177547
effective search space used: 367177547
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 45 (21.9 bits)