BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1880
(81 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P63170|DYL1_RAT Dynein light chain 1, cytoplasmic OS=Rattus norvegicus GN=Dynll1
PE=1 SV=1
Length = 89
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M++ MQ ++ A + L K N K I+ H +EF++++ P WHC+VG +G+ V+ +
Sbjct: 13 MSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87
>sp|P63169|DYL1_RABIT Dynein light chain 1, cytoplasmic OS=Oryctolagus cuniculus
GN=DYNLL1 PE=1 SV=1
Length = 89
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M++ MQ ++ A + L K N K I+ H +EF++++ P WHC+VG +G+ V+ +
Sbjct: 13 MSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87
>sp|P63168|DYL1_MOUSE Dynein light chain 1, cytoplasmic OS=Mus musculus GN=Dynll1 PE=1
SV=1
Length = 89
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M++ MQ ++ A + L K N K I+ H +EF++++ P WHC+VG +G+ V+ +
Sbjct: 13 MSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87
>sp|P61273|DYL1_MACFA Dynein light chain 1, cytoplasmic OS=Macaca fascicularis
GN=DYNLL1 PE=3 SV=1
Length = 89
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M++ MQ ++ A + L K N K I+ H +EF++++ P WHC+VG +G+ V+ +
Sbjct: 13 MSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87
>sp|P63167|DYL1_HUMAN Dynein light chain 1, cytoplasmic OS=Homo sapiens GN=DYNLL1 PE=1
SV=1
Length = 89
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M++ MQ ++ A + L K N K I+ H +EF++++ P WHC+VG +G+ V+ +
Sbjct: 13 MSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87
>sp|P61285|DYL1_BOVIN Dynein light chain 1, cytoplasmic OS=Bos taurus GN=DYNLL1 PE=1
SV=1
Length = 89
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M++ MQ ++ A + L K N K I+ H +EF++++ P WHC+VG +G+ V+ +
Sbjct: 13 MSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87
>sp|Q22799|DYL1_CAEEL Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans
GN=dlc-1 PE=1 SV=1
Length = 89
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M+ MQ I A + L K N K I+ + +EF++++ P WHC+VG +G+ V+ +
Sbjct: 13 MSDDMQQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87
>sp|Q39580|DYL1_CHLRE Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas
reinhardtii PE=1 SV=1
Length = 91
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M++ MQ+ + A + L K N K I+ + +EF+R+ P WHC+VG +G+ V+ +
Sbjct: 15 MSEEMQADAVDCATQALEKYNIEKDIAAYIKKEFDRKHNPTWHCIVGRNFGSYVTHETKH 74
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G +ILLFK
Sbjct: 75 FIYFYLGQVAILLFK 89
>sp|Q24117|DYL1_DROME Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster
GN=ctp PE=1 SV=1
Length = 89
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M++ MQ + A + L K N K I+ + +EF++++ P WHC+VG +G+ V+ +
Sbjct: 13 MSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRH 72
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87
>sp|Q78P75|DYL2_RAT Dynein light chain 2, cytoplasmic OS=Rattus norvegicus GN=Dynll2
PE=1 SV=1
Length = 89
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M++ MQ + A + + K N K I+ + +EF++++ P WHC+VG +G+ V+ +
Sbjct: 13 MSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87
>sp|Q9D0M5|DYL2_MOUSE Dynein light chain 2, cytoplasmic OS=Mus musculus GN=Dynll2 PE=1
SV=1
Length = 89
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M++ MQ + A + + K N K I+ + +EF++++ P WHC+VG +G+ V+ +
Sbjct: 13 MSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87
>sp|Q96FJ2|DYL2_HUMAN Dynein light chain 2, cytoplasmic OS=Homo sapiens GN=DYNLL2 PE=1
SV=1
Length = 89
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M++ MQ + A + + K N K I+ + +EF++++ P WHC+VG +G+ V+ +
Sbjct: 13 MSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87
>sp|Q3MHR3|DYL2_BOVIN Dynein light chain 2, cytoplasmic OS=Bos taurus GN=DYNLL2 PE=3
SV=1
Length = 89
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M++ MQ + A + + K N K I+ + +EF++++ P WHC+VG +G+ V+ +
Sbjct: 13 MSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87
>sp|O96860|DYL2_DROME Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster
GN=Cdlc2 PE=3 SV=1
Length = 89
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M++ MQ + A + L K N K I+ +EF++++ P WHC+VG +G+ V+ +
Sbjct: 13 MSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRH 72
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G +ILLFK
Sbjct: 73 FIYFYLGQVAILLFK 87
>sp|O02414|DYL1_HELCR Dynein light chain LC6, flagellar outer arm OS=Heliocidaris
crassispina PE=3 SV=1
Length = 89
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M + MQ + A + L K N K I+ + +EF++++ P WHC+VG +G+ V+ +
Sbjct: 13 MPEDMQQDAVDCATQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 72
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G ++LLFK
Sbjct: 73 FIYFYLGQVAVLLFK 87
>sp|O94111|DYL1_EMENI Dynein light chain, cytoplasmic OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=nudG PE=3 SV=1
Length = 94
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M++ MQ + +A + + K + K I+Q+ REF+ + WHCVVG +G+ V+ +
Sbjct: 18 MSEDMQQEAVEVAIEAMEKYHIEKDIAQYIKREFDSRKGATWHCVVGRNFGSFVTHETKH 77
Query: 61 FMYLSMGPFSILLFKIQ 77
F+Y +G +ILLFK Q
Sbjct: 78 FIYFYLGHCAILLFKTQ 94
>sp|Q9UR05|DYL1_SCHPO Dynein light chain 1, cytoplasmic OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dlc2 PE=3 SV=1
Length = 85
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M++ MQ I A + + K K I+ REF+++F P WHC+VG +G+ V+ +
Sbjct: 9 MSEKMQQEAIHAAVQAMEKFTIEKDIAAFIKREFDKKFSPTWHCIVGRNFGSFVTHESRH 68
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G + LLFK
Sbjct: 69 FIYFYLGTVAFLLFK 83
>sp|Q94758|DYL1_SCHMA Dynein light chain OS=Schistosoma mansoni GN=DLC PE=1 SV=1
Length = 89
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 45/75 (60%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M++ MQ I +A + K + K I+ + ++F+R++ P WHC+VG +G+ V+ + +
Sbjct: 13 MSEEMQEDAIHIAAGAIDKHDLEKDIAANIKKDFDRKYHPTWHCIVGRHFGSYVTHETHN 72
Query: 61 FMYLSMGPFSILLFK 75
F+Y + + LLFK
Sbjct: 73 FIYFYLDDRAFLLFK 87
>sp|Q94748|DYL2_SCHMA Probable dynein light chain OS=Schistosoma mansoni PE=3 SV=1
Length = 89
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M + MQ + A L K K ++ + +EF+R++ PNWHC+VG +G+ V+ +
Sbjct: 13 MHEDMQETAVHTAAAALDKYEIEKDVAAYIKKEFDRKYNPNWHCIVGKHFGSYVTHETQH 72
Query: 61 FMYLSMGPFSILLFK 75
F+Y + + LLFK
Sbjct: 73 FIYFYLQERAFLLFK 87
>sp|Q86A88|DYL_DICDI Dynein light chain, cytoplasmic OS=Dictyostelium discoideum
GN=dlcB PE=3 SV=1
Length = 91
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%)
Query: 5 MQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYL 64
MQ K +TN + I+ +EF++++ P WHC+VG +G+ V+ + +F+Y
Sbjct: 19 MQQDATECTIKAFEETNIERDIAMIIKKEFDKKYSPTWHCIVGKSFGSFVTHETKNFIYF 78
Query: 65 SMGPFSILLFK 75
++ S+LLFK
Sbjct: 79 NINKHSVLLFK 89
>sp|Q6FUJ0|DYL1_CANGA Dynein light chain 1, cytoplasmic OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DYN2 PE=3 SV=1
Length = 86
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M MQ +A + + + + I+ +E + ++ WH +VG +G+ V+ +KG
Sbjct: 11 MGDEMQQEVFRIAEEAMREHTLEREIASVIKKEMDSRYGHTWHVIVGRSFGSYVTHEKGK 70
Query: 61 FMYLSMGPFSILLFK 75
F+Y +GP ++L+FK
Sbjct: 71 FVYFYVGPLALLVFK 85
>sp|Q21557|DYL2_CAEEL Probable dynein light chain 2, cytoplasmic OS=Caenorhabditis
elegans GN=dlc-2 PE=3 SV=2
Length = 90
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 39/75 (52%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M P + I++ R+ N K ++ E +++F WH + G C+G+ VS++ G
Sbjct: 13 MEDPQRDMVISVVREAQRLYNIDKDVAAFVKEELDKKFGATWHVICGKCFGSRVSYEMGH 72
Query: 61 FMYLSMGPFSILLFK 75
F+ L +++++K
Sbjct: 73 FILLKCNKVNVMIYK 87
>sp|Q02647|DYL1_YEAST Dynein light chain 1, cytoplasmic OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DYN2 PE=1 SV=1
Length = 92
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 42/75 (56%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
+T ++ + +++ L K + I+ ++ + ++ WH +VG +G+ V+ +KG
Sbjct: 16 ITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGH 75
Query: 61 FMYLSMGPFSILLFK 75
F+Y +GP + L+FK
Sbjct: 76 FVYFYIGPLAFLVFK 90
>sp|Q759T0|DYL1_ASHGO Dynein light chain 1, cytoplasmic OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DYN2
PE=3 SV=1
Length = 88
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 32/52 (61%)
Query: 24 KAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMGPFSILLFK 75
+ ++ + +E + + WH +VG +G+ V+ +KG F+Y +GP + L+FK
Sbjct: 35 REVAAYIKKELDSKHGQTWHVIVGKNFGSYVTHEKGHFIYFYIGPLAFLVFK 86
>sp|Q6BZF8|DYL1_DEBHA Dynein light chain 1, cytoplasmic OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=DYN2 PE=3 SV=1
Length = 91
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 40/75 (53%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
+ + MQ+ ++ + + K I+ + +E ++ + WH +VG +G+ V+ ++G
Sbjct: 15 LPEEMQTRIFELSNEAVSNYKIEKDIATYLKKELDQLYGATWHVIVGKSFGSYVTHEQGF 74
Query: 61 FMYLSMGPFSILLFK 75
F Y +G + L+FK
Sbjct: 75 FTYFYIGQLAFLIFK 89
>sp|Q6CWX4|DYL1_KLULA Dynein light chain 1, cytoplasmic OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DYN2 PE=3 SV=1
Length = 87
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 1 MTKPM---QSFTIAMARKILLKTNNPKA-------ISQHFLREFNRQFKPNWHCVVGHCY 50
M+KP+ T + +I ++N A I+ + ++ + WH +VG +
Sbjct: 1 MSKPVLKASDITDELRDEIFELSSNATANYKLEREIAAYIKKQLDVSQGETWHVIVGKNF 60
Query: 51 GACVSFQKGSFMYLSMGPFSILLFK 75
G+ V+ +KG F+Y +GP + L+FK
Sbjct: 61 GSYVTHEKGYFVYFYIGPLAFLVFK 85
>sp|Q39579|DYL2_CHLRE Dynein 11 kDa light chain, flagellar outer arm OS=Chlamydomonas
reinhardtii PE=1 SV=1
Length = 120
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/85 (18%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPN-------WHCVVGHCYGAC 53
M + + + +A + K K I+ + E+++++ + +HC+VG + +
Sbjct: 28 MPESFEQDAVQIALIAVDKYRQLKDIAFYIKHEYDKKYPGSGKATEGVYHCIVGKSFASA 87
Query: 54 VSFQKGSFMYLSMGPFSILLFKIQD 78
VS + F+++ + + ++L+K +D
Sbjct: 88 VSHETRQFIHMKVDTYHVILWKSKD 112
>sp|A4F4L4|DNAL4_PIG Dynein light chain 4, axonemal OS=Sus scrofa GN=DNAL4 PE=3 SV=1
Length = 105
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/48 (22%), Positives = 27/48 (56%)
Query: 20 TNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMG 67
+NN ++ ++ +++F +WH V+G +G ++ + + +YL G
Sbjct: 47 SNNNESAAKMIKETMDKKFGSSWHVVIGEGFGFEITHEVKNLLYLYFG 94
>sp|Q9DCM4|DNAL4_MOUSE Dynein light chain 4, axonemal OS=Mus musculus GN=Dnal4 PE=2 SV=2
Length = 105
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/48 (22%), Positives = 27/48 (56%)
Query: 20 TNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMG 67
+NN ++ ++ +++F +WH V+G +G ++ + + +YL G
Sbjct: 47 SNNNESAAKMIKETMDKKFGSSWHVVIGEGFGFEITHEVKNLLYLYFG 94
>sp|O96015|DNAL4_HUMAN Dynein light chain 4, axonemal OS=Homo sapiens GN=DNAL4 PE=2 SV=1
Length = 105
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/48 (22%), Positives = 27/48 (56%)
Query: 20 TNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMG 67
+NN ++ ++ +++F +WH V+G +G ++ + + +YL G
Sbjct: 47 SNNNESAAKMIKETMDKKFGSSWHVVIGEGFGFEITHEVKNLLYLYFG 94
>sp|Q32KN5|DNAL4_BOVIN Dynein light chain 4, axonemal OS=Bos taurus GN=DNAL4 PE=3 SV=1
Length = 105
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/48 (22%), Positives = 27/48 (56%)
Query: 20 TNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMG 67
+NN ++ ++ +++F +WH V+G +G ++ + + +YL G
Sbjct: 47 SNNNESAAKMIKETMDKKFGSSWHVVIGEGFGFEITHEVKNLLYLYFG 94
>sp|Q09847|NU146_SCHPO Nucleoporin nup146 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nup146 PE=1 SV=1
Length = 1325
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 3 KPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQ 37
K M S + R + + ++ K +S H+LREF RQ
Sbjct: 1273 KSMSSDMMTQFRALGISQSSTKQVSAHYLREFERQ 1307
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.138 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,729,347
Number of Sequences: 539616
Number of extensions: 880072
Number of successful extensions: 2171
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2139
Number of HSP's gapped (non-prelim): 32
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)