Query psy1880
Match_columns 81
No_of_seqs 104 out of 530
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 18:38:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1880.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1880hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3430|consensus 100.0 1.4E-41 2.9E-46 207.0 10.6 77 1-77 13-90 (90)
2 PTZ00059 dynein light chain; P 100.0 9.5E-41 2.1E-45 204.9 11.0 77 1-77 14-90 (90)
3 PLN03058 dynein light chain ty 100.0 1.5E-40 3.1E-45 215.2 11.2 81 1-81 43-126 (128)
4 PF01221 Dynein_light: Dynein 100.0 1.2E-38 2.6E-43 194.5 10.3 77 1-77 13-89 (89)
5 PF04155 Ground-like: Ground-l 97.6 0.0016 3.4E-08 38.3 9.0 59 15-75 17-76 (76)
6 PF05075 DUF684: Protein of un 90.9 4.1 8.8E-05 30.1 9.3 55 22-76 187-251 (345)
7 PF10703 MoaF: Molybdenum cofa 85.1 1.8 3.9E-05 31.3 4.2 33 41-76 182-215 (265)
8 PF15650 Tox-REase-9: Restrict 83.3 1 2.3E-05 27.6 2.0 20 28-47 68-87 (89)
9 PF12652 CotJB: CotJB protein; 79.6 1.4 2.9E-05 26.3 1.6 17 25-41 40-56 (78)
10 PF08776 VASP_tetra: VASP tetr 74.6 7.8 0.00017 20.4 3.4 32 3-36 6-37 (40)
11 PF06150 ChaB: ChaB; InterPro 72.7 14 0.00031 20.5 4.7 41 2-43 10-54 (57)
12 PF13742 tRNA_anti_2: OB-fold 66.0 24 0.00053 21.3 4.9 49 24-76 5-59 (99)
13 PF08958 DUF1871: Domain of un 63.2 9.7 0.00021 22.7 2.6 30 11-40 25-54 (79)
14 PRK00286 xseA exodeoxyribonucl 62.9 25 0.00055 26.5 5.4 49 23-77 8-62 (438)
15 PF12362 DUF3646: DNA polymera 61.7 13 0.00028 23.6 3.2 30 23-52 48-77 (117)
16 PF10440 WIYLD: Ubiquitin-bind 60.1 12 0.00025 21.7 2.5 44 8-51 9-52 (65)
17 PF14900 DUF4493: Domain of un 58.1 33 0.00071 23.6 5.0 37 32-68 119-160 (235)
18 TIGR02084 leud 3-isopropylmala 56.6 11 0.00024 25.2 2.3 34 22-55 25-62 (156)
19 cd03472 Rieske_RO_Alpha_BPDO_l 56.2 28 0.0006 22.0 4.1 38 34-76 1-39 (128)
20 PRK13007 succinyl-diaminopimel 56.1 71 0.0015 22.7 6.8 37 1-37 1-40 (352)
21 PF05184 SapB_1: Saposin-like 55.2 25 0.00053 17.1 3.7 29 5-33 6-34 (39)
22 PF10069 DICT: Sensory domain 54.8 15 0.00032 23.4 2.6 21 37-57 106-127 (129)
23 PF07742 BTG: BTG family; Int 54.2 23 0.00051 22.5 3.5 19 25-43 29-47 (118)
24 PF08006 DUF1700: Protein of u 53.4 43 0.00093 22.1 4.8 35 1-35 17-65 (181)
25 PF12550 GCR1_C: Transcription 52.5 5.3 0.00011 23.4 0.2 12 32-43 29-40 (81)
26 cd03538 Rieske_RO_Alpha_AntDO 51.0 63 0.0014 20.8 5.2 44 28-76 9-53 (146)
27 PF06457 Ectatomin: Ectatomin; 51.0 7.4 0.00016 19.5 0.6 14 23-36 21-34 (34)
28 PF10925 DUF2680: Protein of u 50.7 25 0.00053 19.7 2.8 16 23-38 34-49 (59)
29 PF13798 PCYCGC: Protein of un 50.1 8.3 0.00018 26.0 0.9 32 8-40 116-147 (158)
30 PF06840 DUF1241: Protein of u 48.2 14 0.00031 24.7 1.8 13 24-36 123-135 (154)
31 PF03869 Arc: Arc-like DNA bin 47.7 42 0.0009 18.0 3.4 35 1-37 11-45 (50)
32 TIGR00237 xseA exodeoxyribonuc 46.3 99 0.0021 23.6 6.3 48 24-77 3-56 (432)
33 PF10045 DUF2280: Uncharacteri 45.3 56 0.0012 20.6 4.0 25 12-36 11-35 (104)
34 PRK14023 homoaconitate hydrata 44.7 17 0.00036 24.5 1.8 34 22-55 27-64 (166)
35 COG1570 XseA Exonuclease VII, 43.7 43 0.00093 26.1 4.0 51 23-77 8-62 (440)
36 PF06925 MGDG_synth: Monogalac 43.6 31 0.00067 22.3 2.9 27 24-50 2-28 (169)
37 PF11858 DUF3378: Domain of un 42.8 35 0.00075 20.3 2.8 20 58-77 29-48 (81)
38 PF08594 UPF0300: Uncharacteri 42.6 1E+02 0.0023 21.8 5.5 19 41-59 95-113 (215)
39 PF06884 DUF1264: Protein of u 41.5 22 0.00049 24.2 2.0 19 26-44 98-116 (171)
40 PRK10425 DNase TatD; Provision 40.8 81 0.0018 22.2 4.8 46 3-48 103-157 (258)
41 COG5556 Uncharacterized conser 40.2 78 0.0017 19.9 4.1 30 2-35 5-34 (110)
42 PRK06489 hypothetical protein; 39.5 20 0.00043 25.9 1.6 32 24-55 136-168 (360)
43 PF08015 Pheromone: Fungal mat 39.4 14 0.00031 20.9 0.7 14 33-46 54-69 (69)
44 KOG2130|consensus 38.4 27 0.00059 26.5 2.2 18 39-56 277-294 (407)
45 cd01579 AcnA_Bact_Swivel Bacte 38.3 22 0.00049 22.6 1.5 31 25-55 27-63 (121)
46 PF09868 DUF2095: Uncharacteri 38.0 86 0.0019 20.3 4.2 18 23-40 94-115 (128)
47 PF12006 DUF3500: Protein of u 37.9 1.6E+02 0.0035 21.6 8.1 22 1-22 221-242 (313)
48 PF02283 CobU: Cobinamide kina 37.6 47 0.001 22.0 3.1 24 23-47 36-59 (167)
49 KOG1569|consensus 37.5 69 0.0015 24.0 4.1 27 25-51 227-261 (323)
50 cd00197 VHS_ENTH_ANTH VHS, ENT 37.3 22 0.00048 21.6 1.4 20 23-45 35-54 (115)
51 KOG3165|consensus 37.2 31 0.00067 23.7 2.1 25 26-50 48-72 (195)
52 cd03545 Rieske_RO_Alpha_OHBDO_ 37.0 1.2E+02 0.0025 19.7 5.5 44 28-76 11-56 (150)
53 KOG4194|consensus 36.9 22 0.00048 29.4 1.6 24 38-61 585-608 (873)
54 PF06057 VirJ: Bacterial virul 36.7 44 0.00095 23.1 2.8 29 25-54 53-81 (192)
55 PF10655 DUF2482: Hypothetical 36.1 34 0.00074 21.3 2.0 41 11-51 11-65 (100)
56 PF01743 PolyA_pol: Poly A pol 36.1 1.1E+02 0.0024 19.1 4.9 37 27-65 28-64 (126)
57 PF10757 YbaJ: Biofilm formati 35.6 25 0.00055 22.7 1.4 20 19-38 65-84 (122)
58 PF01545 Cation_efflux: Cation 35.5 50 0.0011 22.8 3.1 22 25-46 255-276 (284)
59 PF08908 DUF1852: Domain of un 35.1 18 0.0004 26.6 0.8 23 33-55 98-120 (322)
60 cd01578 AcnA_Mitochon_Swivel M 34.6 24 0.00052 23.6 1.2 18 38-55 67-84 (149)
61 cd05503 Bromo_BAZ2A_B_like Bro 34.6 1E+02 0.0022 18.3 4.0 35 4-38 60-97 (97)
62 PF11534 HTHP: Hexameric tyros 34.2 1E+02 0.0022 18.3 3.7 34 2-35 14-47 (75)
63 cd06913 beta3GnTL1_like Beta 1 31.9 96 0.0021 20.2 3.9 29 21-49 7-35 (219)
64 cd05498 Bromo_Brdt_II_like Bro 31.7 1.2E+02 0.0025 18.1 4.3 35 4-38 65-102 (102)
65 PRK00466 acetyl-lysine deacety 31.5 1E+02 0.0023 22.0 4.3 40 3-43 6-48 (346)
66 KOG2451|consensus 31.3 1.1E+02 0.0023 24.1 4.4 35 1-35 58-94 (503)
67 PF00352 TBP: Transcription fa 30.6 84 0.0018 18.3 3.1 25 53-77 30-58 (86)
68 cd01674 Homoaconitase_Swivel H 30.5 54 0.0012 21.4 2.3 33 23-56 24-61 (129)
69 cd05392 RasGAP_Neurofibromin_l 30.2 38 0.00081 24.6 1.8 34 14-47 140-174 (323)
70 PF10302 DUF2407: DUF2407 ubiq 30.1 25 0.00055 21.5 0.8 7 42-48 90-96 (97)
71 cd04196 GT_2_like_d Subfamily 29.7 99 0.0022 19.5 3.6 23 24-47 11-33 (214)
72 PRK13888 conjugal transfer pro 29.5 19 0.00041 25.3 0.1 19 27-45 91-109 (206)
73 cd03548 Rieske_RO_Alpha_OMO_CA 28.8 1.5E+02 0.0032 18.7 4.2 36 37-78 10-46 (136)
74 KOG2915|consensus 28.5 57 0.0012 24.3 2.5 34 32-65 37-71 (314)
75 PF04622 ERG2_Sigma1R: ERG2 an 28.4 1.4E+02 0.0029 21.1 4.2 34 7-40 34-68 (216)
76 PRK12414 putative aminotransfe 28.3 1.7E+02 0.0036 21.3 4.9 47 2-48 44-97 (384)
77 TIGR02087 LEUD_arch 3-isopropy 28.2 48 0.001 22.0 1.9 34 22-55 25-62 (154)
78 PRK06915 acetylornithine deace 28.0 1.3E+02 0.0029 22.0 4.4 32 6-37 16-50 (422)
79 PRK08775 homoserine O-acetyltr 27.9 39 0.00085 24.1 1.5 32 24-55 121-152 (343)
80 COG0463 WcaA Glycosyltransfera 27.7 1E+02 0.0022 18.0 3.2 28 21-49 13-40 (291)
81 PRK09111 DNA polymerase III su 27.6 75 0.0016 25.4 3.2 28 24-51 505-532 (598)
82 PRK00103 rRNA large subunit me 27.5 1.2E+02 0.0026 20.1 3.7 29 24-53 83-111 (157)
83 PF02806 Alpha-amylase_C: Alph 27.5 77 0.0017 18.2 2.6 38 39-76 46-93 (95)
84 PRK10667 Hha toxicity attenuat 27.1 1.2E+02 0.0025 19.6 3.4 20 19-38 65-84 (122)
85 TIGR01916 F420_cofE F420-0:gam 27.0 1.1E+02 0.0023 22.0 3.5 31 24-54 125-155 (243)
86 KOG3990|consensus 27.0 58 0.0013 23.9 2.2 39 6-44 53-103 (305)
87 PF03701 UPF0181: Uncharacteri 26.9 1.2E+02 0.0026 16.7 4.8 32 2-33 9-44 (51)
88 PF07062 Clc-like: Clc-like; 26.7 57 0.0012 22.8 2.1 25 37-63 22-46 (211)
89 PF15571 Imm25: Immunity prote 26.7 48 0.001 21.5 1.6 22 24-45 18-39 (124)
90 PLN02605 monogalactosyldiacylg 26.4 86 0.0019 22.8 3.1 26 23-48 12-37 (382)
91 TIGR03849 arch_ComA phosphosul 26.4 1.9E+02 0.0041 20.6 4.7 46 1-49 97-157 (237)
92 TIGR01738 bioH putative pimelo 26.3 36 0.00079 21.5 1.0 27 24-55 53-79 (245)
93 cd01577 IPMI_Swivel Aconatase- 26.2 34 0.00074 20.9 0.8 15 41-55 18-32 (91)
94 TIGR03384 betaine_BetI transcr 26.2 1.4E+02 0.0031 18.8 3.8 22 1-22 5-26 (189)
95 PRK08596 acetylornithine deace 25.8 1.3E+02 0.0028 22.2 4.0 34 4-37 10-49 (421)
96 PF13565 HTH_32: Homeodomain-l 25.6 1.3E+02 0.0028 16.5 4.4 26 13-38 39-66 (77)
97 COG3056 Uncharacterized lipopr 25.4 1.5E+02 0.0033 20.8 3.9 32 3-34 172-203 (204)
98 TIGR03228 anthran_1_2_A anthra 25.4 1.9E+02 0.004 22.4 4.8 46 28-77 25-70 (438)
99 PRK13608 diacylglycerol glucos 25.2 91 0.002 22.8 3.1 26 23-48 19-44 (391)
100 PF06983 3-dmu-9_3-mt: 3-demet 25.1 28 0.0006 21.6 0.3 11 35-45 106-116 (116)
101 CHL00168 pbsA heme oxygenase; 25.0 1.2E+02 0.0026 21.5 3.5 35 1-35 181-216 (238)
102 cd06423 CESA_like CESA_like is 25.0 1.5E+02 0.0031 17.4 3.6 25 24-49 10-34 (180)
103 PRK04443 acetyl-lysine deacety 25.0 1.2E+02 0.0027 21.7 3.7 33 5-37 4-39 (348)
104 PF13382 Adenine_deam_C: Adeni 24.9 46 0.00099 22.5 1.3 28 36-63 34-70 (171)
105 TIGR00199 cinA_cterm competenc 24.8 1.9E+02 0.0041 18.8 4.2 45 3-47 46-91 (146)
106 cd02522 GT_2_like_a GT_2_like_ 24.8 1.4E+02 0.003 19.1 3.6 29 20-49 8-36 (221)
107 cd05391 RasGAP_p120GAP p120GAP 24.6 53 0.0011 24.2 1.7 32 12-43 138-170 (315)
108 PF05696 DUF826: Protein of un 24.5 1.2E+02 0.0026 18.1 2.9 25 12-36 12-36 (78)
109 PRK06765 homoserine O-acetyltr 24.5 50 0.0011 24.7 1.6 33 23-55 143-175 (389)
110 TIGR00246 tRNA_RlmH_YbeA rRNA 24.4 1.3E+02 0.0029 19.8 3.5 28 24-53 81-108 (153)
111 PRK13293 F420-0--gamma-glutamy 24.4 1.2E+02 0.0027 21.7 3.5 30 24-53 126-155 (245)
112 KOG2470|consensus 24.2 95 0.002 24.2 3.0 44 4-47 406-450 (510)
113 PRK10018 putative glycosyl tra 24.2 1.4E+02 0.003 21.2 3.8 29 20-49 14-42 (279)
114 PF12697 Abhydrolase_6: Alpha/ 24.0 51 0.0011 20.4 1.4 31 24-55 50-80 (228)
115 cd02860 Pullulanase_N_term Pul 24.0 87 0.0019 18.4 2.4 25 33-57 40-65 (100)
116 COG1498 SIK1 Protein implicate 23.8 1.1E+02 0.0024 23.5 3.4 36 1-36 204-239 (395)
117 cd04468 S1_eIF5A S1_eIF5A: Euk 23.8 1.6E+02 0.0034 17.0 3.7 27 23-51 33-59 (69)
118 PRK10812 putative DNAse; Provi 23.7 2.7E+02 0.0058 19.6 5.2 46 3-48 106-160 (265)
119 cd00404 Aconitase_swivel Aconi 23.7 58 0.0013 19.7 1.5 14 41-54 16-29 (88)
120 COG0066 LeuD 3-isopropylmalate 23.6 42 0.0009 23.3 1.0 15 41-55 63-77 (191)
121 PF00561 Abhydrolase_1: alpha/ 23.2 75 0.0016 20.1 2.1 30 24-54 28-57 (230)
122 PF02464 CinA: Competence-dama 23.2 2.2E+02 0.0048 18.5 5.2 45 2-46 51-96 (154)
123 KOG4025|consensus 22.9 64 0.0014 22.3 1.8 13 24-36 127-139 (207)
124 TIGR02735 purC_vibrio phosphor 22.8 1.2E+02 0.0025 23.2 3.3 39 1-39 320-363 (365)
125 PF06202 GDE_C: Amylo-alpha-1, 22.7 2.6E+02 0.0057 20.7 5.1 15 24-38 195-209 (370)
126 PHA02590 hypothetical protein; 22.7 2E+02 0.0044 18.0 3.8 38 3-40 4-46 (105)
127 cd01580 AcnA_IRP_Swivel Aconit 22.6 53 0.0011 22.5 1.3 17 38-54 94-110 (171)
128 PF11169 DUF2956: Protein of u 22.6 1.6E+02 0.0034 18.6 3.3 17 2-18 1-17 (103)
129 PF00817 IMS: impB/mucB/samB f 22.4 81 0.0018 19.9 2.1 26 24-49 115-140 (149)
130 TIGR01641 phageSPP1_gp7 phage 22.3 1.4E+02 0.0031 17.7 3.1 21 15-35 7-27 (108)
131 TIGR00171 leuD 3-isopropylmala 22.1 41 0.00088 23.1 0.7 12 44-55 73-84 (188)
132 PF13592 HTH_33: Winged helix- 21.9 71 0.0015 17.3 1.6 17 23-39 7-23 (60)
133 PF10438 Cyc-maltodext_C: Cycl 21.9 1.4E+02 0.0031 17.4 3.0 18 57-74 8-26 (78)
134 COG4079 Uncharacterized protei 21.9 2E+02 0.0044 21.1 4.2 46 8-55 133-178 (293)
135 PF03398 Ist1: Regulator of Vp 21.8 79 0.0017 20.9 2.0 39 2-42 82-120 (165)
136 PF10047 DUF2281: Protein of u 21.8 1.5E+02 0.0033 16.6 3.0 21 1-21 12-32 (66)
137 PRK04184 DNA topoisomerase VI 21.6 4E+02 0.0086 21.3 6.1 74 4-78 291-388 (535)
138 PF14824 Sirohm_synth_M: Siroh 21.2 53 0.0012 16.1 0.8 14 25-38 17-30 (30)
139 COG1539 FolB Dihydroneopterin 21.0 2.3E+02 0.005 17.9 4.4 25 20-44 70-94 (121)
140 PF11841 DUF3361: Domain of un 20.9 2.7E+02 0.0059 18.7 4.4 30 2-31 115-146 (160)
141 PRK07777 aminotransferase; Val 20.9 2.1E+02 0.0045 20.7 4.2 24 25-48 69-92 (387)
142 PF01996 F420_ligase: F420-0:G 20.7 80 0.0017 22.1 1.9 30 23-52 132-161 (228)
143 COG1999 Uncharacterized protei 20.6 2.4E+02 0.0052 19.2 4.2 25 23-47 115-139 (207)
144 TIGR02427 protocat_pcaD 3-oxoa 20.6 88 0.0019 19.7 2.0 31 24-55 63-93 (251)
145 cd01781 AF6_RA_repeat2 Ubiquit 20.4 41 0.00089 21.0 0.4 20 6-25 25-44 (100)
146 COG5129 MAK16 Nuclear protein 20.4 26 0.00056 25.4 -0.6 13 40-53 5-17 (303)
147 KOG3938|consensus 20.3 1.9E+02 0.0042 21.5 3.9 22 1-22 252-273 (334)
148 PF01726 LexA_DNA_bind: LexA D 20.3 1.8E+02 0.0038 16.3 3.9 28 3-30 5-35 (65)
149 cd01576 AcnB_Swivel Aconitase 20.2 54 0.0012 21.3 0.9 16 43-58 53-68 (131)
150 cd00219 ToxGAP GTPase-activati 20.1 75 0.0016 20.5 1.5 31 6-36 2-33 (120)
No 1
>KOG3430|consensus
Probab=100.00 E-value=1.4e-41 Score=206.99 Aligned_cols=77 Identities=39% Similarity=0.790 Sum_probs=75.6
Q ss_pred CChHHHHHHHHHHHHHHHhCC-ChHHHHHHHHHHhhccCCCceEEEEeCccceeEEeccCcEEEEEeCCEEEEEEeeC
Q psy1880 1 MTKPMQSFTIAMARKILLKTN-NPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMGPFSILLFKIQ 77 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~~~-~~k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~illfk~~ 77 (81)
||++||++|+++|++|+++|+ ++++||..||++||++|||+||||||++|||+|||++++||||++|.++|||||++
T Consensus 13 M~~~mq~~a~~~a~~al~~f~~~~k~iA~~iKkefDkkyG~~WhcivG~~FGs~vThe~g~Fiyf~~g~l~illfK~~ 90 (90)
T KOG3430|consen 13 MPEEMQQEAIELARQALEKFNVIEKDIAAFIKKEFDKKYGPTWHCIVGRNFGSYVTHETGHFIYFYLGVLAILLFKCA 90 (90)
T ss_pred CChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcCCccEEEEcCCcceEEEeecCcEEEEEeceEEEEEEecC
Confidence 999999999999999999999 88999999999999999999999999999999999999999999999999999984
No 2
>PTZ00059 dynein light chain; Provisional
Probab=100.00 E-value=9.5e-41 Score=204.93 Aligned_cols=77 Identities=36% Similarity=0.715 Sum_probs=76.0
Q ss_pred CChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccCCCceEEEEeCccceeEEeccCcEEEEEeCCEEEEEEeeC
Q psy1880 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMGPFSILLFKIQ 77 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~illfk~~ 77 (81)
||++||++|+++|.+|++++++++|||++||++||++|||+||||||++|||+|||++++||||++|+++|||||++
T Consensus 14 M~~emq~~a~~~~~~Al~~~~~~kdiA~~IK~~fD~~yg~~WhciVG~~Fgs~vthe~~~~i~F~~~~~~vLlfK~~ 90 (90)
T PTZ00059 14 MSEDMQQDAIDCANQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 90 (90)
T ss_pred CCHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhhcCCCCEEEEecCeeEEEEEeCCcEEEEEECCEEEEEEecC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999985
No 3
>PLN03058 dynein light chain type 1 family protein; Provisional
Probab=100.00 E-value=1.5e-40 Score=215.15 Aligned_cols=81 Identities=35% Similarity=0.682 Sum_probs=78.6
Q ss_pred CChHHHHHHHHHHHHHHHhCC---ChHHHHHHHHHHhhccCCCceEEEEeCccceeEEeccCcEEEEEeCCEEEEEEeeC
Q psy1880 1 MTKPMQSFTIAMARKILLKTN---NPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMGPFSILLFKIQ 77 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~~~---~~k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~illfk~~ 77 (81)
||++||++|+++|.+|+++++ +++|||++||++||++|||+||||||++|||+|||++++||||++|+++||||||+
T Consensus 43 M~~emQ~~ave~a~~Al~k~~~~~~ekdIA~~IKk~fDkkYG~tWHCIVGk~FGs~VTHe~~~fIyF~ig~~aiLLfKt~ 122 (128)
T PLN03058 43 MPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFSIDKVYILLFKTA 122 (128)
T ss_pred CCHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhhhhCCceEEEECCcEEEEEEEcCCcEEEEEECCEEEEEEecc
Confidence 999999999999999999974 67999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy1880 78 DEAL 81 (81)
Q Consensus 78 ~~~~ 81 (81)
.+|+
T Consensus 123 ~~~~ 126 (128)
T PLN03058 123 VEPL 126 (128)
T ss_pred CccC
Confidence 9986
No 4
>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....
Probab=100.00 E-value=1.2e-38 Score=194.53 Aligned_cols=77 Identities=34% Similarity=0.795 Sum_probs=73.5
Q ss_pred CChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccCCCceEEEEeCccceeEEeccCcEEEEEeCCEEEEEEeeC
Q psy1880 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMGPFSILLFKIQ 77 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~illfk~~ 77 (81)
||++||++|+++|.+|++++++++|+|++||++||++|||+||||||++|||++||++++++||++++++||||||+
T Consensus 13 M~~~~~~~~~~~~~~a~~~~~~~~eiA~~iK~~lD~~yG~~Wh~IVG~~Fg~~~th~~~~~~~f~~~~~~~li~kt~ 89 (89)
T PF01221_consen 13 MPEEMQEEAIELAKEALKKYQDEKEIAEFIKQELDKKYGPTWHCIVGKSFGSSVTHEPGTFLYFKIGNIAFLIFKTQ 89 (89)
T ss_dssp S-HHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHSS-EEEEEESEEEEEEEEETTEEEEEEETTEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCceEEEECCcEEEEEEEcCCcEEEEEECCEEEEEEecC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999985
No 5
>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].
Probab=97.61 E-value=0.0016 Score=38.30 Aligned_cols=59 Identities=8% Similarity=0.151 Sum_probs=48.2
Q ss_pred HHHHhCCChHHHHHHHHHHhhccCCCceEEEEeC-ccceeEEeccCcEEEEEeCCEEEEEEe
Q psy1880 15 KILLKTNNPKAISQHFLREFNRQFKPNWHCVVGH-CYGACVSFQKGSFMYLSMGPFSILLFK 75 (81)
Q Consensus 15 ~a~~~~~~~k~iA~~iK~~lD~~yg~~WhciVG~-~Fgs~vth~~~~~i~F~~~~~~illfk 75 (81)
++++. .+..++++.|-+.++++||+.+-||+++ +|....... ..|.-...+++..++|+
T Consensus 17 ~~~~~-~~~~~s~~~Iq~~~e~~f~~~f~vIcs~~~Fsy~~~~~-~~~C~~~~~g~~c~af~ 76 (76)
T PF04155_consen 17 KNMKE-CNLSISKRAIQKAAEKRFGGSFEVICSEGDFSYSTHTD-DLYCKVEKNGVTCLAFA 76 (76)
T ss_pred HHhcc-CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCceeEEecc-cceeeeeeCCEEEEEEC
Confidence 44443 6678899999999999999999999998 565554444 78888899999999985
No 6
>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans.
Probab=90.92 E-value=4.1 Score=30.12 Aligned_cols=55 Identities=5% Similarity=0.224 Sum_probs=37.2
Q ss_pred ChHHHHHHHHHHhhccCC-CceEEEEeC------c--cceeEEeccCcEEE-EEeCCEEEEEEee
Q psy1880 22 NPKAISQHFLREFNRQFK-PNWHCVVGH------C--YGACVSFQKGSFMY-LSMGPFSILLFKI 76 (81)
Q Consensus 22 ~~k~iA~~iK~~lD~~yg-~~WhciVG~------~--Fgs~vth~~~~~i~-F~~~~~~illfk~ 76 (81)
+..+.|..||+.||+..- -.+-+||-. + |-+...+....+|. |.-|+..++||||
T Consensus 187 sn~eKAd~Ik~~Le~ilTnDsFYIiVfd~~~~~~~~~~y~~~~~~~dq~I~s~~rGgcNv~VYRS 251 (345)
T PF05075_consen 187 SNEEKADEIKKKLEKILTNDSFYIIVFDDCSGYDNHYYYGFYDNNEDQYIESFNRGGCNVFVYRS 251 (345)
T ss_pred ChHHHHHHHHHHHHhhCCCCcEEEEEecccccCCccceeeeccCcccCEEEEEeCCCeEEEEEee
Confidence 346899999999999653 367888822 1 11111344555555 5678999999999
No 7
>PF10703 MoaF: Molybdenum cofactor biosynthesis protein F; InterPro: IPR024724 Molybdenum cofactor biosynthesis protein F (MoaF) is essential for the production of the monoamine-inducible 30kDa protein in Klebsiella []. It is necessary for reconstituting organoautotrophic growth in Ralstonia eutropha []. MoaF is conserved in proteobacteria and some lower eukaryotes. The operon regulating the Moa genes is responsible for molybdenum cofactor biosynthesis.
Probab=85.13 E-value=1.8 Score=31.35 Aligned_cols=33 Identities=15% Similarity=0.490 Sum_probs=25.6
Q ss_pred ceEEEEeCccceeEEeccCcEEEEEe-CCEEEEEEee
Q psy1880 41 NWHCVVGHCYGACVSFQKGSFMYLSM-GPFSILLFKI 76 (81)
Q Consensus 41 ~WhciVG~~Fgs~vth~~~~~i~F~~-~~~~illfk~ 76 (81)
+|||+.|.+=|-. +....-++++ +++.++.|+=
T Consensus 182 ~W~CL~G~e~Gla---D~D~c~~~Ki~d~lYlf~WrE 215 (265)
T PF10703_consen 182 AWQCLSGVEKGLA---DTDRCHYYKIADNLYLFTWRE 215 (265)
T ss_pred EEEEeeccccCCC---CccceEEEEecCCEEEEEEEe
Confidence 7999999876644 4577888888 4688888873
No 8
>PF15650 Tox-REase-9: Restriction endonuclease fold toxin 9
Probab=83.35 E-value=1 Score=27.58 Aligned_cols=20 Identities=10% Similarity=0.514 Sum_probs=16.5
Q ss_pred HHHHHHhhccCCCceEEEEe
Q psy1880 28 QHFLREFNRQFKPNWHCVVG 47 (81)
Q Consensus 28 ~~iK~~lD~~yg~~WhciVG 47 (81)
+.=|++|...||.+|-|||-
T Consensus 68 ~~Y~~el~~~~G~~W~~~l~ 87 (89)
T PF15650_consen 68 ENYKQELEKIYGGGWKTRLE 87 (89)
T ss_pred HHHHHHhcCccCCCeeEEee
Confidence 34468899999999999983
No 9
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=79.61 E-value=1.4 Score=26.34 Aligned_cols=17 Identities=12% Similarity=0.495 Sum_probs=13.8
Q ss_pred HHHHHHHHHhhccCCCc
Q psy1880 25 AISQHFLREFNRQFKPN 41 (81)
Q Consensus 25 ~iA~~iK~~lD~~yg~~ 41 (81)
..-+.+++.+.++|||-
T Consensus 40 ~~~~~l~~~Ye~~yGPL 56 (78)
T PF12652_consen 40 KQRKQLKKEYEKRYGPL 56 (78)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 44577889999999995
No 10
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=74.61 E-value=7.8 Score=20.38 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhc
Q psy1880 3 KPMQSFTIAMARKILLKTNNPKAISQHFLREFNR 36 (81)
Q Consensus 3 ~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD~ 36 (81)
+.|+++|++.++.-+++.+ .+|-+.|+++|.+
T Consensus 6 e~~KqEIL~EvrkEl~K~K--~EIIeA~~~eL~r 37 (40)
T PF08776_consen 6 ERLKQEILEEVRKELQKVK--EEIIEAIRQELSR 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhc
Confidence 4578889888888777655 5788888888865
No 11
>PF06150 ChaB: ChaB; InterPro: IPR009317 This family of proteins contain a conserved 60 residue region. This protein is known as ChaB in Escherichia coli and is found next to ChaA, which is a cation transporter protein. ChaB may be regulate ChaA function in some way.; PDB: 1SG7_A.
Probab=72.68 E-value=14 Score=20.55 Aligned_cols=41 Identities=7% Similarity=0.170 Sum_probs=24.4
Q ss_pred ChHHHHHHHHHHHHHHHhCCChH---HHH-HHHHHHhhccCCCceE
Q psy1880 2 TKPMQSFTIAMARKILLKTNNPK---AIS-QHFLREFNRQFKPNWH 43 (81)
Q Consensus 2 ~~~mq~~~~~~~~~a~~~~~~~k---~iA-~~iK~~lD~~yg~~Wh 43 (81)
|..=|+--++....|++.+.++. .+| ..+|+...+ -++.|.
T Consensus 10 P~~Aq~if~~afn~a~~~~~de~~A~~vAw~AVk~~Y~k-~~g~W~ 54 (57)
T PF06150_consen 10 PEHAQRIFRKAFNSAWEEYGDEERAHRVAWAAVKRKYEK-VNGRWV 54 (57)
T ss_dssp -SHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHEEE-SSS-EE
T ss_pred CHHHHHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHhee-cCCEee
Confidence 44445555555667777886653 233 778999998 688885
No 12
>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain
Probab=66.00 E-value=24 Score=21.29 Aligned_cols=49 Identities=14% Similarity=0.362 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhcc--CCCceEEEEeCccceeEEeccCcEEEEEeC----CEEEEEEee
Q psy1880 24 KAISQHFLREFNRQ--FKPNWHCVVGHCYGACVSFQKGSFMYLSMG----PFSILLFKI 76 (81)
Q Consensus 24 k~iA~~iK~~lD~~--yg~~WhciVG~~Fgs~vth~~~~~i~F~~~----~~~illfk~ 76 (81)
.++.+.||+.+++. ++..| |.|.=- .++.-.+..+||.+. .+...+|++
T Consensus 5 s~l~~~ik~~le~~~~~~~vw--V~GEIs--~~~~~~~gh~YftLkD~~a~i~~~~~~~ 59 (99)
T PF13742_consen 5 SELNNYIKDLLERDPPLPNVW--VEGEIS--NLKRHSSGHVYFTLKDEEASISCVIFRS 59 (99)
T ss_pred HHHHHHHHHHHhcCCCcCCEE--EEEEEe--ecEECCCceEEEEEEcCCcEEEEEEEHH
Confidence 57899999999998 56777 556411 122226778999983 467777776
No 13
>PF08958 DUF1871: Domain of unknown function (DUF1871); InterPro: IPR015053 This set of hypothetical proteins is produced by prokaryotes pertaining to the Bacillus genus. ; PDB: 1U84_A.
Probab=63.18 E-value=9.7 Score=22.69 Aligned_cols=30 Identities=10% Similarity=0.248 Sum_probs=22.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHhhccCCC
Q psy1880 11 AMARKILLKTNNPKAISQHFLREFNRQFKP 40 (81)
Q Consensus 11 ~~~~~a~~~~~~~k~iA~~iK~~lD~~yg~ 40 (81)
..+..++....+..++|+.|..-|...||.
T Consensus 25 ~~Iv~~v~~~~~~~~LA~~Iq~If~~SF~e 54 (79)
T PF08958_consen 25 NDIVQAVHENDDPEELAKKIQSIFEFSFGE 54 (79)
T ss_dssp HHHHHHHTT-S-HHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHcc
Confidence 345567777778889999999999988875
No 14
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=62.90 E-value=25 Score=26.46 Aligned_cols=49 Identities=14% Similarity=0.334 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhhccCCCceEEEEeC--ccceeEEeccCcEEEEEeC----CEEEEEEeeC
Q psy1880 23 PKAISQHFLREFNRQFKPNWHCVVGH--CYGACVSFQKGSFMYLSMG----PFSILLFKIQ 77 (81)
Q Consensus 23 ~k~iA~~iK~~lD~~yg~~WhciVG~--~Fgs~vth~~~~~i~F~~~----~~~illfk~~ 77 (81)
-.++..+||..+|..++..| |.|. +|- +-....+||.+. .+...+|++.
T Consensus 8 vsel~~~ik~~le~~~~~v~--v~gEis~~~----~~~sGH~Yf~Lkd~~a~i~~~~~~~~ 62 (438)
T PRK00286 8 VSELNRYVKSLLERDLGQVW--VRGEISNFT----RHSSGHWYFTLKDEIAQIRCVMFKGS 62 (438)
T ss_pred HHHHHHHHHHHHHhhCCcEE--EEEEeCCCe----eCCCCeEEEEEEcCCcEEEEEEEcCh
Confidence 35899999999999988887 5565 443 234557999984 4788899863
No 15
>PF12362 DUF3646: DNA polymerase III gamma and tau subunits C terminal; InterPro: IPR022107 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00004 from PFAM. The proteins in this family are frequently annotated as the gamma and tau subunits of DNA polymerase III, however there is little accompanying literature to back this up.
Probab=61.73 E-value=13 Score=23.65 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHhhccCCCceEEEEeCccce
Q psy1880 23 PKAISQHFLREFNRQFKPNWHCVVGHCYGA 52 (81)
Q Consensus 23 ~k~iA~~iK~~lD~~yg~~WhciVG~~Fgs 52 (81)
.+++|..|.+.|..--|..|.|.+++.=|.
T Consensus 48 p~dl~~~L~~~L~~wTG~rW~V~~s~~~g~ 77 (117)
T PF12362_consen 48 PKDLAQRLSRKLQEWTGQRWIVSLSNEPGE 77 (117)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 469999999999999999999999876553
No 16
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=60.15 E-value=12 Score=21.66 Aligned_cols=44 Identities=16% Similarity=0.245 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHhhccCCCceEEEEeCccc
Q psy1880 8 FTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYG 51 (81)
Q Consensus 8 ~~~~~~~~a~~~~~~~k~iA~~iK~~lD~~yg~~WhciVG~~Fg 51 (81)
.=++-|.+|++.+.-.++.....=+.|=+-||+.|--|=-.||.
T Consensus 9 ~R~daA~dam~~lG~~~~~v~~vl~~LL~lY~~nW~lIEed~Y~ 52 (65)
T PF10440_consen 9 ERIDAALDAMRQLGFSKKQVRPVLKNLLKLYDGNWELIEEDNYR 52 (65)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCchhhhcccHH
Confidence 33567889999998877655555555556899999877555543
No 17
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=58.07 E-value=33 Score=23.61 Aligned_cols=37 Identities=24% Similarity=0.501 Sum_probs=29.2
Q ss_pred HHhhccCCCceEEEEeCccceeEEe--ccC---cEEEEEeCC
Q psy1880 32 REFNRQFKPNWHCVVGHCYGACVSF--QKG---SFMYLSMGP 68 (81)
Q Consensus 32 ~~lD~~yg~~WhciVG~~Fgs~vth--~~~---~~i~F~~~~ 68 (81)
..|.+.|+..|++-|...-+..+++ ... .-.||..+.
T Consensus 119 ~~f~~~f~~~y~vtV~~~~~~~~~~~~~~~~~~~~~Yf~~~~ 160 (235)
T PF14900_consen 119 DEFKKYFGSDYSVTVSTGAGGSVTFNKDETTSDRSAYFKAGE 160 (235)
T ss_pred HHHHhhhccceEEEEEccCCccEEEeeccCCCCcceEEECCC
Confidence 4577778888999998755777777 555 889999987
No 18
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=56.56 E-value=11 Score=25.16 Aligned_cols=34 Identities=24% Similarity=0.518 Sum_probs=22.0
Q ss_pred ChHHHHHHHHHHhh----ccCCCceEEEEeCccceeEE
Q psy1880 22 NPKAISQHFLREFN----RQFKPNWHCVVGHCYGACVS 55 (81)
Q Consensus 22 ~~k~iA~~iK~~lD----~~yg~~WhciVG~~Fgs~vt 55 (81)
+..++|+++-..+| +++.+..-+|.|+|||+=-|
T Consensus 25 ~~~~l~~~~f~~~~p~f~~~~~~g~iiVaG~NFG~GSS 62 (156)
T TIGR02084 25 DPKELAKHCMEDLDKDFVKKVKEGDIIVAGENFGCGSS 62 (156)
T ss_pred CHHHHHhhhhccCChhHHhhcCCCCEEEccCcccCCCc
Confidence 34567777766666 44566666666889997433
No 19
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=56.19 E-value=28 Score=22.01 Aligned_cols=38 Identities=16% Similarity=0.381 Sum_probs=27.1
Q ss_pred hhccCCCceEEEEeC-ccceeEEeccCcEEEEEeCCEEEEEEee
Q psy1880 34 FNRQFKPNWHCVVGH-CYGACVSFQKGSFMYLSMGPFSILLFKI 76 (81)
Q Consensus 34 lD~~yg~~WhciVG~-~Fgs~vth~~~~~i~F~~~~~~illfk~ 76 (81)
||+-|...|+.|.=. .+. +++.+..+.+++..|+|+|.
T Consensus 1 ~~~i~~~~W~~v~~~~el~-----~~g~~~~~~~~~~~i~l~r~ 39 (128)
T cd03472 1 LERVFARSWLLLGHETHIP-----KAGDYLTTYMGEDPVIVVRQ 39 (128)
T ss_pred CcchhhCCCeEeEEHHHCC-----CCCCEEEEEECCceEEEEEC
Confidence 466788899987543 332 34566677789989999985
No 20
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=56.06 E-value=71 Score=22.69 Aligned_cols=37 Identities=11% Similarity=0.063 Sum_probs=30.5
Q ss_pred CChHHHHHHHHHHHHHHHhCCC---hHHHHHHHHHHhhcc
Q psy1880 1 MTKPMQSFTIAMARKILLKTNN---PKAISQHFLREFNRQ 37 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~~~~---~k~iA~~iK~~lD~~ 37 (81)
|+.+...++++...+.++..+. +.++|++|++.|++.
T Consensus 1 ~~~~~~~~~~~~l~~li~ips~s~~e~~~~~~l~~~l~~~ 40 (352)
T PRK13007 1 MTLDLAADLAELTAALVDIPSVSGDEKALADAVEAALRAL 40 (352)
T ss_pred CccchHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHhC
Confidence 6677788899999998886543 678999999999986
No 21
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=55.19 E-value=25 Score=17.15 Aligned_cols=29 Identities=14% Similarity=0.294 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q psy1880 5 MQSFTIAMARKILLKTNNPKAISQHFLRE 33 (81)
Q Consensus 5 mq~~~~~~~~~a~~~~~~~k~iA~~iK~~ 33 (81)
.-+.++..+...++...++.+|.+.+++.
T Consensus 6 ~C~~~v~~i~~~l~~~~t~~~I~~~l~~~ 34 (39)
T PF05184_consen 6 ICKFVVKEIEKLLKNNKTEEEIKKALEKA 34 (39)
T ss_dssp HHHHHHHHHHHHHHSTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 34677888888888777778888887764
No 22
>PF10069 DICT: Sensory domain found in DIguanylate Cyclases & Two-component systems; InterPro: IPR019278 This entry, found in various cyanobacterial sensor proteins that catalyse the reaction [ATP + protein L-histidine = ADP + protein N- phospho-L-histidine], has no known function.
Probab=54.78 E-value=15 Score=23.35 Aligned_cols=21 Identities=24% Similarity=0.605 Sum_probs=15.3
Q ss_pred cCCCceEEEE-eCccceeEEec
Q psy1880 37 QFKPNWHCVV-GHCYGACVSFQ 57 (81)
Q Consensus 37 ~yg~~WhciV-G~~Fgs~vth~ 57 (81)
.....|+||| |.+|.|.+...
T Consensus 106 ~L~~EWfvvv~~~~~~~~LvA~ 127 (129)
T PF10069_consen 106 PLRREWFVVVDGPHFAAALVAR 127 (129)
T ss_pred CceeEEEEEEECCCCeEEEEEe
Confidence 4566899998 56888877554
No 23
>PF07742 BTG: BTG family; InterPro: IPR002087 Anti-proliferative proteins have been shown to include mammalian and avian protein BTG1 (which appears to be involved in negative regulation of cell proliferation) and rat/mouse NGF-inducible protein PC3/TIS21 (BTG2) [, , ]. These proteins have from 158 to 363 amino acid residues, that are highly similar and include 3 conserved cysteine residues. BTG2 seems to have a signal sequence; while the other proteins may lack such a domain. The sequence of the N-terminal half of these proteins is well conserved.; PDB: 3DJU_B 3E9V_A 2Z15_D 2D5R_B 3DJN_B.
Probab=54.23 E-value=23 Score=22.45 Aligned_cols=19 Identities=11% Similarity=0.392 Sum_probs=15.2
Q ss_pred HHHHHHHHHhhccCCCceE
Q psy1880 25 AISQHFLREFNRQFKPNWH 43 (81)
Q Consensus 25 ~iA~~iK~~lD~~yg~~Wh 43 (81)
..|+.|.+.|-.+|.+.|+
T Consensus 29 ~F~~~L~~~L~~ry~~HW~ 47 (118)
T PF07742_consen 29 RFAEELENLLCERYKGHWY 47 (118)
T ss_dssp HHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999997
No 24
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=53.38 E-value=43 Score=22.09 Aligned_cols=35 Identities=14% Similarity=0.291 Sum_probs=24.6
Q ss_pred CChHHHHHHHHHHHHHHHh--------------CCChHHHHHHHHHHhh
Q psy1880 1 MTKPMQSFTIAMARKILLK--------------TNNPKAISQHFLREFN 35 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~--------------~~~~k~iA~~iK~~lD 35 (81)
||++.++++++...+-++. ..+.+++|+.|+.+..
T Consensus 17 lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~~ 65 (181)
T PF08006_consen 17 LPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEYS 65 (181)
T ss_pred CCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 6888888888877776664 2234678888886543
No 25
>PF12550 GCR1_C: Transcriptional activator of glycolytic enzymes; InterPro: IPR022210 This domain family is found in eukaryotes, and is approximately 80 amino acids in length. This family is activates the transcription of glycolytic enzymes.
Probab=52.47 E-value=5.3 Score=23.44 Aligned_cols=12 Identities=17% Similarity=0.888 Sum_probs=10.0
Q ss_pred HHhhccCCCceE
Q psy1880 32 REFNRQFKPNWH 43 (81)
Q Consensus 32 ~~lD~~yg~~Wh 43 (81)
+.|+++||..|-
T Consensus 29 ~~le~~yG~~WR 40 (81)
T PF12550_consen 29 RSLEKKYGSKWR 40 (81)
T ss_pred HHHHHHhChhhc
Confidence 468999999995
No 26
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=51.03 E-value=63 Score=20.81 Aligned_cols=44 Identities=18% Similarity=0.351 Sum_probs=32.4
Q ss_pred HHHHHHhhccCCCceEEEEeC-ccceeEEeccCcEEEEEeCCEEEEEEee
Q psy1880 28 QHFLREFNRQFKPNWHCVVGH-CYGACVSFQKGSFMYLSMGPFSILLFKI 76 (81)
Q Consensus 28 ~~iK~~lD~~yg~~WhciVG~-~Fgs~vth~~~~~i~F~~~~~~illfk~ 76 (81)
+....+++..|...|+.|.-. .. -+++.++-+.+++..++|+|.
T Consensus 9 ~~~~~e~~~i~~~~W~~v~~~~el-----p~~G~~~~~~i~g~~i~v~r~ 53 (146)
T cd03538 9 EIFALEMERLFGNAWIYVGHESQV-----PNPGDYITTRIGDQPVVMVRH 53 (146)
T ss_pred HHHHHHHHHHhhcCCEEEEEHHHC-----CCCCCEEEEEECCeeEEEEEC
Confidence 345667788889999987642 33 135678888899999999986
No 27
>PF06457 Ectatomin: Ectatomin; InterPro: IPR009458 Ectatomin is a toxin from the venom of the ant Ectatomma tuberculatum. Ectatomin can efficiently insert into the plasma membrane, where it can form channels. Ectatomin was shown to inhibit L-type calcium currents in isolated rat cardiac myocytes []. In these cells, ectatomin induces a gradual, irreversible increase in ion leakage across the membrane, which can lead to cell death. Ectatomin is comprised of two subunits, A and B, which are homologous. The structure of ectatomin reveals that each subunit consists of two alpha helices with a connecting hinge region, which form a hairpin structure that is stabilised by disulphide bridges. A disulphide bridge between the hinge regions of the two subunits links the heterodimer together, forming a closed bundle of four helices with a left-handed twist [].; GO: 0005216 ion channel activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1ECI_A.
Probab=51.02 E-value=7.4 Score=19.49 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHhhc
Q psy1880 23 PKAISQHFLREFNR 36 (81)
Q Consensus 23 ~k~iA~~iK~~lD~ 36 (81)
+-+||.+||++-|+
T Consensus 21 ~g~iat~ik~~c~k 34 (34)
T PF06457_consen 21 SGSIATMIKRKCDK 34 (34)
T ss_dssp SCCHHHHHHHHCH-
T ss_pred cccHHHHHHHHhCC
Confidence 35899999998764
No 28
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=50.67 E-value=25 Score=19.73 Aligned_cols=16 Identities=0% Similarity=0.138 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHhhccC
Q psy1880 23 PKAISQHFLREFNRQF 38 (81)
Q Consensus 23 ~k~iA~~iK~~lD~~y 38 (81)
-++-|+.||+.+|+++
T Consensus 34 TqeqAd~ik~~id~~~ 49 (59)
T PF10925_consen 34 TQEQADAIKKHIDQRQ 49 (59)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 3688999999999865
No 29
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=50.12 E-value=8.3 Score=26.00 Aligned_cols=32 Identities=9% Similarity=0.207 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHhhccCCC
Q psy1880 8 FTIAMARKILLKTNNPKAISQHFLREFNRQFKP 40 (81)
Q Consensus 8 ~~~~~~~~a~~~~~~~k~iA~~iK~~lD~~yg~ 40 (81)
..+++|.+|++.+..-+. ...|++..|++|..
T Consensus 116 vCl~ia~~a~~~~~~Gks-~~eIR~~ID~kYk~ 147 (158)
T PF13798_consen 116 VCLDIAVQAVQMYQEGKS-PKEIRQYIDEKYKE 147 (158)
T ss_pred HHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHh
Confidence 356788888888877664 67788888998864
No 30
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=48.21 E-value=14 Score=24.74 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhc
Q psy1880 24 KAISQHFLREFNR 36 (81)
Q Consensus 24 k~iA~~iK~~lD~ 36 (81)
|+||..||+-||.
T Consensus 123 K~IAsaIK~lLdA 135 (154)
T PF06840_consen 123 KEIASAIKKLLDA 135 (154)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7999999999995
No 31
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=47.74 E-value=42 Score=17.98 Aligned_cols=35 Identities=9% Similarity=0.101 Sum_probs=22.6
Q ss_pred CChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcc
Q psy1880 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQ 37 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD~~ 37 (81)
||+++.+.+-+.|.+ +.=+...+|...|.+.|.+.
T Consensus 11 lP~~l~~~lk~~A~~--~gRS~NsEIv~~L~~~l~~e 45 (50)
T PF03869_consen 11 LPEELKEKLKERAEE--NGRSMNSEIVQRLEEALKKE 45 (50)
T ss_dssp CEHHHHHHHHHHHHH--TTS-HHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHhcc
Confidence 677777777665543 11122468888888888764
No 32
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=46.34 E-value=99 Score=23.58 Aligned_cols=48 Identities=10% Similarity=0.325 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhccCCCceEEEEeC--ccceeEEeccCcEEEEEeC----CEEEEEEeeC
Q psy1880 24 KAISQHFLREFNRQFKPNWHCVVGH--CYGACVSFQKGSFMYLSMG----PFSILLFKIQ 77 (81)
Q Consensus 24 k~iA~~iK~~lD~~yg~~WhciVG~--~Fgs~vth~~~~~i~F~~~----~~~illfk~~ 77 (81)
.++..+||..+|..++..| |.|. ||- .| ....+||.+. .+...+|++.
T Consensus 3 sel~~~ik~~le~~~~~v~--V~GEisn~~---~~-~sGH~YFtLkD~~a~i~~vmf~~~ 56 (432)
T TIGR00237 3 SELNAQIKALLEATFLQVW--IQGEISNFT---QP-VSGHWYFTLKDENAQVRCVMFRGN 56 (432)
T ss_pred HHHHHHHHHHHHhhCCcEE--EEEEecCCe---eC-CCceEEEEEEcCCcEEEEEEEcCh
Confidence 4788999999999999777 5564 554 23 4446999983 4788899874
No 33
>PF10045 DUF2280: Uncharacterized conserved protein (DUF2280); InterPro: IPR018738 This entry is represented by Burkholderia phage Bups phi1, Orf2.36. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=45.32 E-value=56 Score=20.59 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=21.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhhc
Q psy1880 12 MARKILLKTNNPKAISQHFLREFNR 36 (81)
Q Consensus 12 ~~~~a~~~~~~~k~iA~~iK~~lD~ 36 (81)
.+.+++-.|.+..++|+.+|++|.-
T Consensus 11 FIVQ~LAcfdTPs~v~~aVk~eFgi 35 (104)
T PF10045_consen 11 FIVQSLACFDTPSEVAEAVKEEFGI 35 (104)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHhCC
Confidence 4456888999999999999999963
No 34
>PRK14023 homoaconitate hydratase small subunit; Provisional
Probab=44.74 E-value=17 Score=24.47 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=20.6
Q ss_pred ChHHHHHHHHHHhh----ccCCCceEEEEeCccceeEE
Q psy1880 22 NPKAISQHFLREFN----RQFKPNWHCVVGHCYGACVS 55 (81)
Q Consensus 22 ~~k~iA~~iK~~lD----~~yg~~WhciVG~~Fgs~vt 55 (81)
+..++++++-..+| +++.+..-+|.|+||||=-|
T Consensus 27 ~~~~l~~~~f~~~~p~f~~~~~~g~IIVaG~NFG~GSS 64 (166)
T PRK14023 27 GEDRFHNYAFAHLRPEFASTVRPGDILVAGRNFGLGSS 64 (166)
T ss_pred CHHHHHhhhccCCChhhHhhcCCCCEEEccCcccCCcc
Confidence 34556666655555 44555655666789997433
No 35
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=43.73 E-value=43 Score=26.07 Aligned_cols=51 Identities=16% Similarity=0.333 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHhhccCCCceEEEEeCccceeEEeccCcEEEEEeC----CEEEEEEeeC
Q psy1880 23 PKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMG----PFSILLFKIQ 77 (81)
Q Consensus 23 ~k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~vth~~~~~i~F~~~----~~~illfk~~ 77 (81)
-.++..+||..||..+|..| |-|. =|.+|+-+....||.+. .+...+|+..
T Consensus 8 VSeln~~ik~llE~~~~~V~--v~GE--ISn~t~~~sgH~YFtLKD~~A~i~c~mf~~~ 62 (440)
T COG1570 8 VSELNDYIKRLLERDLGQVW--VRGE--ISNFTRPASGHLYFTLKDERAQIRCVMFKGN 62 (440)
T ss_pred HHHHHHHHHHHHHhcCCeEE--EEEE--ecCCccCCCccEEEEEccCCceEEEEEEcCc
Confidence 35799999999999999888 4564 13346444448999994 4677788764
No 36
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=43.62 E-value=31 Score=22.32 Aligned_cols=27 Identities=11% Similarity=0.166 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhccCCCceEEEEeCcc
Q psy1880 24 KAISQHFLREFNRQFKPNWHCVVGHCY 50 (81)
Q Consensus 24 k~iA~~iK~~lD~~yg~~WhciVG~~F 50 (81)
+..|+.|++.|.++||+...|.|..-|
T Consensus 2 ~~aA~Al~eal~~~~~~~~~v~v~D~~ 28 (169)
T PF06925_consen 2 NSAARALAEALERRRGPDAEVEVVDFL 28 (169)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEEehH
Confidence 357999999999999999999987643
No 37
>PF11858 DUF3378: Domain of unknown function (DUF3378); InterPro: IPR024568 Ribonuclease HIII 3.1.26 from EC cleaves RNA from DNA-RNA hybrids. It catalyses endonucleolytic cleavage to 5'-phospho-monoesters. Two types of ribonuclease H in Bacillus subtilis, RNase HII (rnhB) and RNase HIII (rnhC), are both known experimentally and are quite similar to each other []. The only RNase H homologue in the Mycoplasmas resembles rnhC. Archaeal forms resemble HII more closely than HIII. This entry represents the uncharacterised N-terminal domain of bacterial RNase HIII.; PDB: 3ASM_A 2D0C_A 2D0B_A 2D0A_A.
Probab=42.80 E-value=35 Score=20.25 Aligned_cols=20 Identities=10% Similarity=0.046 Sum_probs=15.9
Q ss_pred cCcEEEEEeCCEEEEEEeeC
Q psy1880 58 KGSFMYLSMGPFSILLFKIQ 77 (81)
Q Consensus 58 ~~~~i~F~~~~~~illfk~~ 77 (81)
++..+.++.++..|.+|+||
T Consensus 29 p~~~f~aK~~~~tIt~Y~SG 48 (81)
T PF11858_consen 29 PYAVFQAKYNGVTITAYKSG 48 (81)
T ss_dssp TTEEEEEEETTEEEEEETTS
T ss_pred CCEEEEEeCCCeEEEEEeCC
Confidence 44556677899999999986
No 38
>PF08594 UPF0300: Uncharacterised protein family (UPF0300); InterPro: IPR013903 This entry of proteins appear to be specific to Schizosaccharomyces pombe (Fission yeast).
Probab=42.61 E-value=1e+02 Score=21.76 Aligned_cols=19 Identities=5% Similarity=0.382 Sum_probs=15.8
Q ss_pred ceEEEEeCccceeEEeccC
Q psy1880 41 NWHCVVGHCYGACVSFQKG 59 (81)
Q Consensus 41 ~WhciVG~~Fgs~vth~~~ 59 (81)
.|-||+.++|-|++-=+..
T Consensus 95 ~W~~I~~k~F~c~I~l~~~ 113 (215)
T PF08594_consen 95 SWIAICSKNFMCNIHLDQP 113 (215)
T ss_pred cEEEEecCcceEEEEecCC
Confidence 8999999999999865443
No 39
>PF06884 DUF1264: Protein of unknown function (DUF1264); InterPro: IPR010686 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 200 residues long. Some family members are annotated as putative lipoproteins.
Probab=41.45 E-value=22 Score=24.24 Aligned_cols=19 Identities=11% Similarity=0.469 Sum_probs=14.7
Q ss_pred HHHHHHHHhhccCCCceEE
Q psy1880 26 ISQHFLREFNRQFKPNWHC 44 (81)
Q Consensus 26 iA~~iK~~lD~~yg~~Whc 44 (81)
+....-+.+-+.||.+||-
T Consensus 98 ae~~~m~~l~~tYGKt~Ht 116 (171)
T PF06884_consen 98 AEKAEMEKLVKTYGKTWHT 116 (171)
T ss_pred HHHHHHHHHHhhhCCeEEe
Confidence 4556667778899999984
No 40
>PRK10425 DNase TatD; Provisional
Probab=40.77 E-value=81 Score=22.23 Aligned_cols=46 Identities=13% Similarity=0.079 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHHhCCC---------hHHHHHHHHHHhhccCCCceEEEEeC
Q psy1880 3 KPMQSFTIAMARKILLKTNN---------PKAISQHFLREFNRQFKPNWHCVVGH 48 (81)
Q Consensus 3 ~~mq~~~~~~~~~a~~~~~~---------~k~iA~~iK~~lD~~yg~~WhciVG~ 48 (81)
.+.|.++.+.-.+...+++. .+++.+.||+...+.-++.+||.-|.
T Consensus 103 ~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~a~~~~l~iL~~~~~~~~~~i~H~fsG~ 157 (258)
T PRK10425 103 PEEQERAFVAQLAIAAELNMPVFMHCRDAHERFMALLEPWLDKLPGAVLHCFTGT 157 (258)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEeCchHHHHHHHHHhccCCCCeEEEecCCC
Confidence 45677888877777676654 35778888875433336889998885
No 41
>COG5556 Uncharacterized conserved protein [Function unknown]
Probab=40.23 E-value=78 Score=19.89 Aligned_cols=30 Identities=17% Similarity=0.388 Sum_probs=22.6
Q ss_pred ChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhh
Q psy1880 2 TKPMQSFTIAMARKILLKTNNPKAISQHFLREFN 35 (81)
Q Consensus 2 ~~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD 35 (81)
++|++..| .+|+..|.+..-+|..+|++|-
T Consensus 5 sdevKtfI----vQalACFDs~S~Va~aVkkEfG 34 (110)
T COG5556 5 SDEVKTFI----VQALACFDSPSVVAAAVKKEFG 34 (110)
T ss_pred cHHHHHHH----HHHHHHcCcHHHHHHHHHHHhc
Confidence 45666555 4688889888889999998764
No 42
>PRK06489 hypothetical protein; Provisional
Probab=39.47 E-value=20 Score=25.88 Aligned_cols=32 Identities=9% Similarity=0.191 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhccCC-CceEEEEeCccceeEE
Q psy1880 24 KAISQHFLREFNRQFK-PNWHCVVGHCYGACVS 55 (81)
Q Consensus 24 k~iA~~iK~~lD~~yg-~~WhciVG~~Fgs~vt 55 (81)
.++|+.+...+.+..| ...++|||.|.|+.+.
T Consensus 136 ~~~a~~~~~~l~~~lgi~~~~~lvG~SmGG~vA 168 (360)
T PRK06489 136 DDMVEAQYRLVTEGLGVKHLRLILGTSMGGMHA 168 (360)
T ss_pred HHHHHHHHHHHHHhcCCCceeEEEEECHHHHHH
Confidence 3566666665534344 4677899999997664
No 43
>PF08015 Pheromone: Fungal mating-type pheromone; InterPro: IPR012597 This family corresponds to mating-type pheromone proteins. The homobasidiomycetes, or mushroom fungi, have arguably the most complex mating system of all known organisms. Many species possess a mating system known as bifactorial incompatibility, where two unlinked loci control the mating-type of an individual incompatibility loci (the A and B mating-type loci). Each A mating-type sublocus encodes a pair of divergently transcribed homeodomain transcription factors while the genes responsible for B mating-type activity encode lipopeptide pheromones and G-protein -coupled pheromone receptors [].; GO: 0000772 mating pheromone activity, 0016020 membrane
Probab=39.44 E-value=14 Score=20.93 Aligned_cols=14 Identities=29% Similarity=0.562 Sum_probs=9.1
Q ss_pred HhhccCCC--ceEEEE
Q psy1880 33 EFNRQFKP--NWHCVV 46 (81)
Q Consensus 33 ~lD~~yg~--~WhciV 46 (81)
..|+..|+ +|-|||
T Consensus 54 d~Er~~~g~~~~fCVI 69 (69)
T PF08015_consen 54 DFERRGGGGAGAFCVI 69 (69)
T ss_pred CccccCCCCceEEEeC
Confidence 44555555 788886
No 44
>KOG2130|consensus
Probab=38.42 E-value=27 Score=26.51 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=13.4
Q ss_pred CCceEEEEeCccceeEEe
Q psy1880 39 KPNWHCVVGHCYGACVSF 56 (81)
Q Consensus 39 g~~WhciVG~~Fgs~vth 56 (81)
++.||||+--..-..||+
T Consensus 277 ~GWWHvVlNle~TIAiTq 294 (407)
T KOG2130|consen 277 SGWWHVVLNLEPTIAITQ 294 (407)
T ss_pred CCeEEEEeccCceeeeee
Confidence 678999987666666665
No 45
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=38.28 E-value=22 Score=22.63 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhc------cCCCceEEEEeCccceeEE
Q psy1880 25 AISQHFLREFNR------QFKPNWHCVVGHCYGACVS 55 (81)
Q Consensus 25 ~iA~~iK~~lD~------~yg~~WhciVG~~Fgs~vt 55 (81)
++++++-..+|. +.|..+-+|.|+|||+=-|
T Consensus 27 ~l~~~~f~~~~p~f~~~~~~~~~~iiVaG~nFG~GSS 63 (121)
T cd01579 27 AISEFVFHRVDPTFAERAKAAGPGFIVGGENYGQGSS 63 (121)
T ss_pred HHHHhhccCCCchHHhhcccCCCeEEEcCCcCCCCcc
Confidence 455555544443 3455565666889997433
No 46
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=38.03 E-value=86 Score=20.35 Aligned_cols=18 Identities=6% Similarity=0.132 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHhhcc----CCC
Q psy1880 23 PKAISQHFLREFNRQ----FKP 40 (81)
Q Consensus 23 ~k~iA~~iK~~lD~~----yg~ 40 (81)
..+.|+.|+..|.++ ||+
T Consensus 94 t~e~A~eLr~~L~~kGvr~fG~ 115 (128)
T PF09868_consen 94 TPEEAKELRSILVKKGVRSFGS 115 (128)
T ss_pred CHHHHHHHHHHHHHhhHHHhCC
Confidence 468999999999998 665
No 47
>PF12006 DUF3500: Protein of unknown function (DUF3500); InterPro: IPR021889 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 335 to 438 amino acids in length. This protein has a conserved GHH sequence motif. This protein has two completely conserved G residues that may be functionally important.
Probab=37.90 E-value=1.6e+02 Score=21.59 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=16.1
Q ss_pred CChHHHHHHHHHHHHHHHhCCC
Q psy1880 1 MTKPMQSFTIAMARKILLKTNN 22 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~~~~ 22 (81)
|+.+.|+.+..++..-+..++.
T Consensus 221 Lt~~Qq~ll~~li~~y~~~~~~ 242 (313)
T PF12006_consen 221 LTADQQELLLALIKEYLGRLPE 242 (313)
T ss_pred CCHHHHHHHHHHHHHHHHhCCH
Confidence 6777777777777777776664
No 48
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=37.61 E-value=47 Score=21.99 Aligned_cols=24 Identities=13% Similarity=0.346 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHhhccCCCceEEEEe
Q psy1880 23 PKAISQHFLREFNRQFKPNWHCVVG 47 (81)
Q Consensus 23 ~k~iA~~iK~~lD~~yg~~WhciVG 47 (81)
+.|+++.|+++-.++ |..|+.|=-
T Consensus 36 D~em~~RI~~H~~~R-~~~w~tiE~ 59 (167)
T PF02283_consen 36 DEEMRERIARHRQRR-PKGWITIEE 59 (167)
T ss_dssp HHHHHHHHHHHHHHS-STCEEEEE-
T ss_pred CHHHHHHHHHHHHhC-CCCcEEEec
Confidence 468999999999999 999999875
No 49
>KOG1569|consensus
Probab=37.50 E-value=69 Score=23.96 Aligned_cols=27 Identities=19% Similarity=0.066 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhc------cCCCce-EEEEeC-ccc
Q psy1880 25 AISQHFLREFNR------QFKPNW-HCVVGH-CYG 51 (81)
Q Consensus 25 ~iA~~iK~~lD~------~yg~~W-hciVG~-~Fg 51 (81)
+|++.|-+...- .+++.| ||.||+ +|-
T Consensus 227 nipemieeFk~G~~i~~d~~~~~~~~~~vGkl~mt 261 (323)
T KOG1569|consen 227 NIPEMIEEFKNGHEIKFDEERENILQIKVGKLDMT 261 (323)
T ss_pred chHHHHHHhhCCcccccccccCceeeeeeeeecCC
Confidence 677777655443 457889 999998 664
No 50
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=37.32 E-value=22 Score=21.57 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHhhccCCCceEEE
Q psy1880 23 PKAISQHFLREFNRQFKPNWHCV 45 (81)
Q Consensus 23 ~k~iA~~iK~~lD~~yg~~Whci 45 (81)
-+++++.|++.++.+ .|+++
T Consensus 35 ~~~~~~~l~kRl~~~---~~~~~ 54 (115)
T cd00197 35 PKEAVDAIKKRINNK---NPHVV 54 (115)
T ss_pred HHHHHHHHHHHhcCC---cHHHH
Confidence 478999999999875 77764
No 51
>KOG3165|consensus
Probab=37.20 E-value=31 Score=23.75 Aligned_cols=25 Identities=16% Similarity=0.553 Sum_probs=20.6
Q ss_pred HHHHHHHHhhccCCCceEEEEeCcc
Q psy1880 26 ISQHFLREFNRQFKPNWHCVVGHCY 50 (81)
Q Consensus 26 iA~~iK~~lD~~yg~~WhciVG~~F 50 (81)
+++.+--..+..-||..|+||-.||
T Consensus 48 ~~s~lffqyn~~L~PPy~vivDTNF 72 (195)
T KOG3165|consen 48 VPSALFFQYNTTLGPPYHVIVDTNF 72 (195)
T ss_pred cchhHHHhcccccCCCeEEEEecch
Confidence 4566777788899999999998876
No 52
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=36.98 E-value=1.2e+02 Score=19.66 Aligned_cols=44 Identities=23% Similarity=0.310 Sum_probs=32.4
Q ss_pred HHHHHHhhccCC-CceEEEEeC-ccceeEEeccCcEEEEEeCCEEEEEEee
Q psy1880 28 QHFLREFNRQFK-PNWHCVVGH-CYGACVSFQKGSFMYLSMGPFSILLFKI 76 (81)
Q Consensus 28 ~~iK~~lD~~yg-~~WhciVG~-~Fgs~vth~~~~~i~F~~~~~~illfk~ 76 (81)
+....++++-|. ..|+.|.-. .. -+++.++-+.+++..++|+|.
T Consensus 11 ~~~~~E~~~if~~~~W~~v~~~~el-----~~~g~~~~~~i~g~~iiv~r~ 56 (150)
T cd03545 11 AYFDREQERIFRGKTWSYVGLEAEI-----PNAGDFKSTFVGDTPVVVTRA 56 (150)
T ss_pred HHHHHHHHhhhCCCceEEEEEHHHC-----CCCCCEEEEEECCceEEEEEC
Confidence 456778888995 999998754 32 134667778888888888885
No 53
>KOG4194|consensus
Probab=36.93 E-value=22 Score=29.39 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=19.5
Q ss_pred CCCceEEEEeCccceeEEeccCcE
Q psy1880 38 FKPNWHCVVGHCYGACVSFQKGSF 61 (81)
Q Consensus 38 yg~~WhciVG~~Fgs~vth~~~~~ 61 (81)
-.+..||||...|||.+++-.+--
T Consensus 585 d~grYQCVvtN~FGStysqk~Klt 608 (873)
T KOG4194|consen 585 DEGRYQCVVTNHFGSTYSQKAKLT 608 (873)
T ss_pred cCceEEEEEecccCcchhheeEEE
Confidence 367899999999999988765543
No 54
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=36.71 E-value=44 Score=23.15 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhccCCCceEEEEeCccceeE
Q psy1880 25 AISQHFLREFNRQFKPNWHCVVGHCYGACV 54 (81)
Q Consensus 25 ~iA~~iK~~lD~~yg~~WhciVG~~Fgs~v 54 (81)
|+++.|.... +++|..=-+.||-|||+-|
T Consensus 53 Dl~~~i~~y~-~~w~~~~vvLiGYSFGADv 81 (192)
T PF06057_consen 53 DLARIIRHYR-ARWGRKRVVLIGYSFGADV 81 (192)
T ss_pred HHHHHHHHHH-HHhCCceEEEEeecCCchh
Confidence 4455444443 3445554588999999854
No 55
>PF10655 DUF2482: Hypothetical protein of unknown function (DUF2482); InterPro: IPR018917 This entry is represented by Bacteriophage 80, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. All the members of this very small, very short family are derived from bacteriophages, of the SA bacteriophages 11, Mu50B, system, and from the Staphylococcal_phi-Mu50B-like_prophages subsystem. All members are hypothetical proteins.
Probab=36.12 E-value=34 Score=21.30 Aligned_cols=41 Identities=24% Similarity=0.521 Sum_probs=25.1
Q ss_pred HHHHHHHHhCCCh-HHHHHHHHHH--hhc-----------cCCCceEEEEeCccc
Q psy1880 11 AMARKILLKTNNP-KAISQHFLRE--FNR-----------QFKPNWHCVVGHCYG 51 (81)
Q Consensus 11 ~~~~~a~~~~~~~-k~iA~~iK~~--lD~-----------~yg~~WhciVG~~Fg 51 (81)
+..++.+...+.| -|+|..|+++ ||- -|-+.=||++|+-|+
T Consensus 11 eelr~llseK~~ELydL~~eI~kETeFdillfS~igv~~GD~~~ss~~alG~~~~ 65 (100)
T PF10655_consen 11 EELRDLLSEKNGELYDLANEIDKETEFDILLFSTIGVSNGDFISSSHCALGNPFG 65 (100)
T ss_pred HHHHHHHHHhhHHHHHHHHHhcccceeeeeeeeeeccccCccccccchhhccHHH
Confidence 3344444444443 5899999965 332 344567888887665
No 56
>PF01743 PolyA_pol: Poly A polymerase head domain; InterPro: IPR002646 This group includes nucleic acid independent RNA polymerases, such as polynucleotide adenylyltransferase (2.7.7.19 from EC), which adds the poly (A) tail to mRNA. This group also includes the tRNA nucleotidyltransferase that adds the CCA to the 3' of the tRNA 2.7.7.25 from EC.; GO: 0003723 RNA binding, 0016779 nucleotidyltransferase activity, 0006396 RNA processing; PDB: 1VFG_A 3H38_A 3H3A_B 3H39_B 3H37_A 1MIY_A 1MIV_B 1MIW_B 1OU5_B 3AQN_A ....
Probab=36.10 E-value=1.1e+02 Score=19.06 Aligned_cols=37 Identities=11% Similarity=0.284 Sum_probs=28.8
Q ss_pred HHHHHHHhhccCCCceEEEEeCccceeEEeccCcEEEEE
Q psy1880 27 SQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLS 65 (81)
Q Consensus 27 A~~iK~~lD~~yg~~WhciVG~~Fgs~vth~~~~~i~F~ 65 (81)
++.+.+.|.++++..+++ |++|+..--+..+..+.+.
T Consensus 28 ~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~di~ 64 (126)
T PF01743_consen 28 PEEFAKLLAKKLGGVFVV--GKRFGTVRVVFGGGSIDIA 64 (126)
T ss_dssp HHHHHHHHCTTCCEEEEE--ETTTTEEEEEETTCEEEEE
T ss_pred HHHHHHHHHhhccccccc--ccccceeeecCCCcccccc
Confidence 567888888999998877 9999987777766665554
No 57
>PF10757 YbaJ: Biofilm formation regulator YbaJ; InterPro: IPR019693 YbaJ regulates biofilm formation. It also has an important role in the regulation of motility in the biofilm. YbaJ functions in increasing conjugation, aggregation and decreasing the motility, resulting in an increase of biofilm [].
Probab=35.58 E-value=25 Score=22.70 Aligned_cols=20 Identities=5% Similarity=0.120 Sum_probs=17.7
Q ss_pred hCCChHHHHHHHHHHhhccC
Q psy1880 19 KTNNPKAISQHFLREFNRQF 38 (81)
Q Consensus 19 ~~~~~k~iA~~iK~~lD~~y 38 (81)
+|+++.++.+.|-+.||.+|
T Consensus 65 KYp~~~~l~~~ideYLDeTy 84 (122)
T PF10757_consen 65 KYPDESDLIELIDEYLDETY 84 (122)
T ss_pred ccCcHhhHHHHHHHHHHHHH
Confidence 57788899999999999986
No 58
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=35.52 E-value=50 Score=22.78 Aligned_cols=22 Identities=9% Similarity=0.323 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhccCCCceEEEE
Q psy1880 25 AISQHFLREFNRQFKPNWHCVV 46 (81)
Q Consensus 25 ~iA~~iK~~lD~~yg~~WhciV 46 (81)
++++.|++.+-++|++.++|+|
T Consensus 255 ~i~~~i~~~l~~~~~~i~~v~I 276 (284)
T PF01545_consen 255 EIRERIEKRLREKFPGIYDVTI 276 (284)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEEE
Confidence 5899999999999999999876
No 59
>PF08908 DUF1852: Domain of unknown function (DUF1852); InterPro: IPR015004 This group of proteins are functionally uncharacterised.
Probab=35.08 E-value=18 Score=26.61 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=19.7
Q ss_pred HhhccCCCceEEEEeCccceeEE
Q psy1880 33 EFNRQFKPNWHCVVGHCYGACVS 55 (81)
Q Consensus 33 ~lD~~yg~~WhciVG~~Fgs~vt 55 (81)
-+|++-|..=.=|||.||.|+|.
T Consensus 98 IvD~kt~~rieGivGNnFSSYVR 120 (322)
T PF08908_consen 98 IVDHKTNERIEGIVGNNFSSYVR 120 (322)
T ss_pred EEecCCCceecceeccccccccc
Confidence 46888888888899999999984
No 60
>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain. Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.
Probab=34.60 E-value=24 Score=23.56 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=13.0
Q ss_pred CCCceEEEEeCccceeEE
Q psy1880 38 FKPNWHCVVGHCYGACVS 55 (81)
Q Consensus 38 yg~~WhciVG~~Fgs~vt 55 (81)
-|-.|-+|.|++||+=-|
T Consensus 67 ~g~~~iIVaG~nyG~GSS 84 (149)
T cd01578 67 HGIKWVVIGDENYGEGSS 84 (149)
T ss_pred cCCCeEEEccCccCCCCc
Confidence 355788888899986433
No 61
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=34.59 E-value=1e+02 Score=18.34 Aligned_cols=35 Identities=3% Similarity=0.027 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhCCChH---HHHHHHHHHhhccC
Q psy1880 4 PMQSFTIAMARKILLKTNNPK---AISQHFLREFNRQF 38 (81)
Q Consensus 4 ~mq~~~~~~~~~a~~~~~~~k---~iA~~iK~~lD~~y 38 (81)
+...++--+...|..-+.... ..|..|++.|++++
T Consensus 60 ef~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 60 EFAEDVRLVFDNCETFNEDDSEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 445555556666655444432 46889999988764
No 62
>PF11534 HTHP: Hexameric tyrosine-coordinated heme protein (HTHP); InterPro: IPR021111 HTHP is from the marine bacterium Silicibacter pomeroyi and has peroxidase and catalase activity. HTHP consists of six monomers which each binds a solvent accessible heme group and is stabilised by the interaction of three neighbouring monomers []. The heme iron is penta-coordinated with a tyrosine residue as proximal ligand [].; PDB: 2OYY_B.
Probab=34.19 E-value=1e+02 Score=18.32 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=24.4
Q ss_pred ChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhh
Q psy1880 2 TKPMQSFTIAMARKILLKTNNPKAISQHFLREFN 35 (81)
Q Consensus 2 ~~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD 35 (81)
|++=.+-++.+++.+++...++.++-+.++...+
T Consensus 14 PeeG~~LAvk~aR~~vk~tQPd~evr~~lR~~Ya 47 (75)
T PF11534_consen 14 PEEGFQLAVKMARMAVKTTQPDAEVRDKLRPEYA 47 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhccCCCHHHHHHhhHHhh
Confidence 4566778999999999998888888777776544
No 63
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=31.90 E-value=96 Score=20.18 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=15.8
Q ss_pred CChHHHHHHHHHHhhccCCCceEEEEeCc
Q psy1880 21 NNPKAISQHFLREFNRQFKPNWHCVVGHC 49 (81)
Q Consensus 21 ~~~k~iA~~iK~~lD~~yg~~WhciVG~~ 49 (81)
+.++-+.+.|..-+.+.|.+.|.+||..+
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~~eiiVvDd 35 (219)
T cd06913 7 NGEQWLDECLESVLQQDFEGTLELSVFND 35 (219)
T ss_pred CcHHHHHHHHHHHHhCCCCCCEEEEEEeC
Confidence 33444555555555556654566666543
No 64
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=31.72 E-value=1.2e+02 Score=18.07 Aligned_cols=35 Identities=9% Similarity=0.086 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhCCCh---HHHHHHHHHHhhccC
Q psy1880 4 PMQSFTIAMARKILLKTNNP---KAISQHFLREFNRQF 38 (81)
Q Consensus 4 ~mq~~~~~~~~~a~~~~~~~---k~iA~~iK~~lD~~y 38 (81)
+.+.++--+...|..-++.. -..|..|++.|++++
T Consensus 65 ef~~D~~li~~Na~~yn~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 65 EFAADVRLMFSNCYKYNPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 44555555666665555443 367999999998875
No 65
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=31.52 E-value=1e+02 Score=21.97 Aligned_cols=40 Identities=10% Similarity=0.088 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHhCC---ChHHHHHHHHHHhhccCCCceE
Q psy1880 3 KPMQSFTIAMARKILLKTN---NPKAISQHFLREFNRQFKPNWH 43 (81)
Q Consensus 3 ~~mq~~~~~~~~~a~~~~~---~~k~iA~~iK~~lD~~yg~~Wh 43 (81)
++|++++++...+.++--+ ++.++|++|+++|++ .|-..+
T Consensus 6 ~~~~~~~~~~l~~lv~i~s~s~~e~~~~~~l~~~l~~-~g~~~~ 48 (346)
T PRK00466 6 ELVKQKAKELLLDLLSIYTPSGNETNATKFFEKISNE-LNLKLE 48 (346)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH-cCCeEE
Confidence 3566777777777665433 356899999999984 454444
No 66
>KOG2451|consensus
Probab=31.34 E-value=1.1e+02 Score=24.09 Aligned_cols=35 Identities=20% Similarity=0.112 Sum_probs=25.6
Q ss_pred CChHHHHHHHHHHHHHHHhCCC--hHHHHHHHHHHhh
Q psy1880 1 MTKPMQSFTIAMARKILLKTNN--PKAISQHFLREFN 35 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~~~~--~k~iA~~iK~~lD 35 (81)
|+-+.-+++|+.|.+|++.+.+ .++=++.|++|.|
T Consensus 58 ~~V~e~~kAI~aA~EaF~s~~~~takeRs~lLrkwy~ 94 (503)
T KOG2451|consen 58 MTVEEAEKAIDAAYEAFKSYRNLTAKERSALLRKWYE 94 (503)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 5666778999999999999876 3455555555554
No 67
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=30.63 E-value=84 Score=18.27 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=17.4
Q ss_pred eEEeccCc--EEEEEeC--CEEEEEEeeC
Q psy1880 53 CVSFQKGS--FMYLSMG--PFSILLFKIQ 77 (81)
Q Consensus 53 ~vth~~~~--~i~F~~~--~~~illfk~~ 77 (81)
.+.|+|+. .+.+++. +..++||+||
T Consensus 30 ~~~YePe~fpgl~~r~~~p~~t~~IF~sG 58 (86)
T PF00352_consen 30 NVEYEPERFPGLIYRLRNPKATVLIFSSG 58 (86)
T ss_dssp TEEEETTTESSEEEEETTTTEEEEEETTS
T ss_pred CcEEeeccCCeEEEeecCCcEEEEEEcCC
Confidence 45777774 4556663 6889999886
No 68
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=30.47 E-value=54 Score=21.41 Aligned_cols=33 Identities=21% Similarity=0.523 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHhhccC----CCceEEEE-eCccceeEEe
Q psy1880 23 PKAISQHFLREFNRQF----KPNWHCVV-GHCYGACVSF 56 (81)
Q Consensus 23 ~k~iA~~iK~~lD~~y----g~~WhciV-G~~Fgs~vth 56 (81)
.+++|++.-+.+|-.| .+. .+|| |+|||+=-|.
T Consensus 24 ~e~la~~~~e~~dp~f~~~v~~g-dilVaG~nFG~GSSR 61 (129)
T cd01674 24 PEKMAEVCMENYDSEFSTKTKQG-DILVSGFNFGTGSSR 61 (129)
T ss_pred HHHHHHhhcccCCchhhhcCCCC-CEEEeCCccCCCCcH
Confidence 4578888887777554 223 4666 5799975443
No 69
>cd05392 RasGAP_Neurofibromin_like Neurofibromin-like proteins include the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2, the closest homolog of neurofibromin, which is responsible for the human autosomal dominant disease neurofibromatosis type I (NF1). The RasGAP Ira1/2 proteins are negative regulators of the Ras-cAMP signaling pathway and conserved from yeast to human. In yeast Ras proteins are activated by GEFs, and inhibited by two GAPs, Ira1 and Ira2. Ras proteins activate the cAMP/protein kinase A (PKA) pathway, which controls metabolism, stress resistance, growth, and meiosis. Recent studies showed that the kelch proteins Gpb1 and Gpb2 inhibit Ras activity via association with Ira1 and Ira2. Gpb1/2 bind to a conserved C-terminal domain of Ira1/2, and loss of Gpb1/2 results in a destabilization of Ira1 and Ira2, leading to elevated levels of Ras2-GTP and uninhibited cAMP-PKA signaling. Since the Gpb1/2 binding domain on Ira1/2 is conserved in the human neurofibromin prote
Probab=30.24 E-value=38 Score=24.57 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=23.7
Q ss_pred HHHHHhCCCh-HHHHHHHHHHhhccCCCceEEEEe
Q psy1880 14 RKILLKTNNP-KAISQHFLREFNRQFKPNWHCVVG 47 (81)
Q Consensus 14 ~~a~~~~~~~-k~iA~~iK~~lD~~yg~~WhciVG 47 (81)
.+.++..+.+ +.||+.|++.+.++|...+.-+||
T Consensus 140 ~~s~~~~P~~lr~i~~~l~~~v~~kfp~~~~~~Vg 174 (323)
T cd05392 140 ISSLDRFPPELREICHHIYEVVSEKFPDSALSAVG 174 (323)
T ss_pred HHhHHhCCHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence 3344444443 689999999999999876554554
No 70
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=30.14 E-value=25 Score=21.50 Aligned_cols=7 Identities=43% Similarity=1.180 Sum_probs=5.6
Q ss_pred eEEEEeC
Q psy1880 42 WHCVVGH 48 (81)
Q Consensus 42 WhciVG~ 48 (81)
=||+||.
T Consensus 90 IhCsIGd 96 (97)
T PF10302_consen 90 IHCSIGD 96 (97)
T ss_pred EEEeccC
Confidence 4999985
No 71
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=29.75 E-value=99 Score=19.55 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhhccCCCceEEEEe
Q psy1880 24 KAISQHFLREFNRQFKPNWHCVVG 47 (81)
Q Consensus 24 k~iA~~iK~~lD~~yg~~WhciVG 47 (81)
+.+.+.|..-+++.|. .|.+||.
T Consensus 11 ~~l~~~l~sl~~q~~~-~~eiiVv 33 (214)
T cd04196 11 KYLREQLDSILAQTYK-NDELIIS 33 (214)
T ss_pred HHHHHHHHHHHhCcCC-CeEEEEE
Confidence 3455555555555554 5666665
No 72
>PRK13888 conjugal transfer protein TrbN; Provisional
Probab=29.49 E-value=19 Score=25.29 Aligned_cols=19 Identities=5% Similarity=0.057 Sum_probs=16.4
Q ss_pred HHHHHHHhhccCCCceEEE
Q psy1880 27 SQHFLREFNRQFKPNWHCV 45 (81)
Q Consensus 27 A~~iK~~lD~~yg~~Whci 45 (81)
|-.|++.+++++|-+|.+|
T Consensus 91 AWILr~~i~~~~G~~W~AV 109 (206)
T PRK13888 91 AWRLRMHIRNDKGDLWTKA 109 (206)
T ss_pred HHHHHHHHHHhhCchHHHH
Confidence 5577899998999999986
No 73
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=28.83 E-value=1.5e+02 Score=18.65 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=26.5
Q ss_pred cCCCceEEEEeC-ccceeEEeccCcEEEEEeCCEEEEEEeeCC
Q psy1880 37 QFKPNWHCVVGH-CYGACVSFQKGSFMYLSMGPFSILLFKIQD 78 (81)
Q Consensus 37 ~yg~~WhciVG~-~Fgs~vth~~~~~i~F~~~~~~illfk~~~ 78 (81)
.|...|+.|.-. .. .++.+.-+.+++..++|+|..+
T Consensus 10 ~~~~~W~~v~~~~el------~~g~~~~~~~~g~~i~l~r~~g 46 (136)
T cd03548 10 GFRNHWYPALFSHEL------EEGEPKGIQLCGEPILLRRVDG 46 (136)
T ss_pred CcccCcEEEEEHHHC------CCCCeEEEEECCcEEEEEecCC
Confidence 577889988743 33 2467788889988999998654
No 74
>KOG2915|consensus
Probab=28.53 E-value=57 Score=24.27 Aligned_cols=34 Identities=32% Similarity=0.622 Sum_probs=27.2
Q ss_pred HHhhccCCCceEE-EEeCccceeEEeccCcEEEEE
Q psy1880 32 REFNRQFKPNWHC-VVGHCYGACVSFQKGSFMYLS 65 (81)
Q Consensus 32 ~~lD~~yg~~Whc-iVG~~Fgs~vth~~~~~i~F~ 65 (81)
..|..+||..=|- |||+-||+-++-..+.|+|..
T Consensus 37 ~~~~~~yGa~~h~~iIGK~~G~~v~sskG~~vylL 71 (314)
T KOG2915|consen 37 GTFQTRYGALPHSDIIGKPYGSKVASSKGKFVYLL 71 (314)
T ss_pred ceeeccccccchhheecCCccceeeecCCcEEEEe
Confidence 4567888886665 779999999999888887754
No 75
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=28.40 E-value=1.4e+02 Score=21.06 Aligned_cols=34 Identities=15% Similarity=0.335 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhCCCh-HHHHHHHHHHhhccCCC
Q psy1880 7 SFTIAMARKILLKTNNP-KAISQHFLREFNRQFKP 40 (81)
Q Consensus 7 ~~~~~~~~~a~~~~~~~-k~iA~~iK~~lD~~yg~ 40 (81)
+.+.++|++++.+++++ +++-+.|-++|-++|++
T Consensus 34 ~~l~~ia~~~ia~~~~~~~~~~~~l~~~L~~~y~~ 68 (216)
T PF04622_consen 34 KVLHEIAKKAIARHPNDTEEILSDLVDELRKKYPD 68 (216)
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhHCCC
Confidence 34567788888887654 67888888999999988
No 76
>PRK12414 putative aminotransferase; Provisional
Probab=28.31 E-value=1.7e+02 Score=21.26 Aligned_cols=47 Identities=11% Similarity=0.011 Sum_probs=22.0
Q ss_pred ChHHHHHHHHHHHHHHHhCCCh---HHHHHHHHHHhhccCC----CceEEEEeC
Q psy1880 2 TKPMQSFTIAMARKILLKTNNP---KAISQHFLREFNRQFK----PNWHCVVGH 48 (81)
Q Consensus 2 ~~~mq~~~~~~~~~a~~~~~~~---k~iA~~iK~~lD~~yg----~~WhciVG~ 48 (81)
+++.++.+.+.+......|... .++-+.|.+++.+.+| +..+++++.
T Consensus 44 ~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~ 97 (384)
T PRK12414 44 DPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIA 97 (384)
T ss_pred CHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEEC
Confidence 3444444444333222335432 3444444444444444 457888864
No 77
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=28.15 E-value=48 Score=22.00 Aligned_cols=34 Identities=21% Similarity=0.465 Sum_probs=19.5
Q ss_pred ChHHHHHHHHHHhhcc----CCCceEEEEeCccceeEE
Q psy1880 22 NPKAISQHFLREFNRQ----FKPNWHCVVGHCYGACVS 55 (81)
Q Consensus 22 ~~k~iA~~iK~~lD~~----yg~~WhciVG~~Fgs~vt 55 (81)
+..++++++-..+|-. ..+.--+|.|+|||+=-|
T Consensus 25 ~~~~l~~~~f~~~~p~f~~~~~~g~iiVaG~NFG~GSS 62 (154)
T TIGR02087 25 DPDELASHAMEGIDPEFAKKVRPGDVIVAGKNFGCGSS 62 (154)
T ss_pred CHHHHHhhccCcCCchhhhcCCCCcEEEcCCcccCCcc
Confidence 3456777776666543 344533444679997433
No 78
>PRK06915 acetylornithine deacetylase; Validated
Probab=28.05 E-value=1.3e+02 Score=22.03 Aligned_cols=32 Identities=0% Similarity=0.204 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhCC---ChHHHHHHHHHHhhcc
Q psy1880 6 QSFTIAMARKILLKTN---NPKAISQHFLREFNRQ 37 (81)
Q Consensus 6 q~~~~~~~~~a~~~~~---~~k~iA~~iK~~lD~~ 37 (81)
+.+++++.++.++--+ +|.++|++|++.|++.
T Consensus 16 ~~~~~~~l~~lv~ips~s~~e~~~~~~l~~~l~~~ 50 (422)
T PRK06915 16 EEEAVKLLKRLIQEKSVSGDESGAQAIVIEKLREL 50 (422)
T ss_pred HHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHhc
Confidence 3445555555555433 2678999999999854
No 79
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=27.89 E-value=39 Score=24.11 Aligned_cols=32 Identities=22% Similarity=0.227 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhccCCCceEEEEeCccceeEE
Q psy1880 24 KAISQHFLREFNRQFKPNWHCVVGHCYGACVS 55 (81)
Q Consensus 24 k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~vt 55 (81)
.+.|+.+...+|..=-+.-+++||.|+|+.|.
T Consensus 121 ~~~a~dl~~ll~~l~l~~~~~lvG~SmGG~vA 152 (343)
T PRK08775 121 ADQADAIALLLDALGIARLHAFVGYSYGALVG 152 (343)
T ss_pred HHHHHHHHHHHHHcCCCcceEEEEECHHHHHH
Confidence 46788888888865323456799999998664
No 80
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=27.73 E-value=1e+02 Score=18.01 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=17.9
Q ss_pred CChHHHHHHHHHHhhccCCCceEEEEeCc
Q psy1880 21 NNPKAISQHFLREFNRQFKPNWHCVVGHC 49 (81)
Q Consensus 21 ~~~k~iA~~iK~~lD~~yg~~WhciVG~~ 49 (81)
+.++-+.+.|+.-+++.+.. |.+||..+
T Consensus 13 n~~~~l~~~l~s~~~q~~~~-~eiivvdd 40 (291)
T COG0463 13 NEEEYLPEALESLLNQTYKD-FEIIVVDD 40 (291)
T ss_pred chhhhHHHHHHHHHhhhhcc-eEEEEEeC
Confidence 33455677777777777666 66666543
No 81
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=27.65 E-value=75 Score=25.44 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhccCCCceEEEEeCccc
Q psy1880 24 KAISQHFLREFNRQFKPNWHCVVGHCYG 51 (81)
Q Consensus 24 k~iA~~iK~~lD~~yg~~WhciVG~~Fg 51 (81)
++++..|++.|.+-.|..|.|.|.+..|
T Consensus 505 ~~~~~~l~~~l~~~t~~~w~v~~~~~~~ 532 (598)
T PRK09111 505 RDLAQRLARKLEEWTGRRWVVSVSREGG 532 (598)
T ss_pred hHHHHHHHHHHHHHhCCceEEEEecCCC
Confidence 6899999999999999999999977554
No 82
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=27.55 E-value=1.2e+02 Score=20.08 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhccCCCceEEEEeCcccee
Q psy1880 24 KAISQHFLREFNRQFKPNWHCVVGHCYGAC 53 (81)
Q Consensus 24 k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~ 53 (81)
.+.|+.|.++.+..- +.-.-|||..+|-.
T Consensus 83 ~~fA~~l~~~~~~g~-~~i~F~IGGa~G~~ 111 (157)
T PRK00103 83 EEFAQELERWRDDGR-SDVAFVIGGADGLS 111 (157)
T ss_pred HHHHHHHHHHHhcCC-ccEEEEEcCccccC
Confidence 479999999866542 36888999988853
No 83
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=27.51 E-value=77 Score=18.23 Aligned_cols=38 Identities=21% Similarity=0.447 Sum_probs=25.5
Q ss_pred CCceEEEEeC---ccce-------eEEeccCcEEEEEeCCEEEEEEee
Q psy1880 39 KPNWHCVVGH---CYGA-------CVSFQKGSFMYLSMGPFSILLFKI 76 (81)
Q Consensus 39 g~~WhciVG~---~Fgs-------~vth~~~~~i~F~~~~~~illfk~ 76 (81)
++.|++|+.. .||. .++-..+.-+.+.+..++.++||-
T Consensus 46 ~g~y~~vlnsd~~~~~g~~~~~~~~v~~~~~g~~~~~lp~~s~~vl~~ 93 (95)
T PF02806_consen 46 AGRYKEVLNSDDEEYGGSGKGNSGEVTVDSNGRITVTLPPYSALVLKL 93 (95)
T ss_dssp SEEEEETTTTTCEEEEESSCSETSEEEEETTSEEEEEESTTEEEEEEE
T ss_pred cceeeEEeCCCccEECCcccccCceEEEeeCCEEEEEECCCEEEEEEE
Confidence 5677777653 3553 244334445899999999999875
No 84
>PRK10667 Hha toxicity attenuator; Provisional
Probab=27.09 E-value=1.2e+02 Score=19.65 Aligned_cols=20 Identities=5% Similarity=0.134 Sum_probs=17.8
Q ss_pred hCCChHHHHHHHHHHhhccC
Q psy1880 19 KTNNPKAISQHFLREFNRQF 38 (81)
Q Consensus 19 ~~~~~k~iA~~iK~~lD~~y 38 (81)
+|+++.++++.|-+.||.+|
T Consensus 65 KYp~~~~l~~~ideYLDeTy 84 (122)
T PRK10667 65 KYPEDSKLIEQIDEYLDDTY 84 (122)
T ss_pred cCCcHhhHHHHHHHHHHHHH
Confidence 57788899999999999987
No 85
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=27.02 E-value=1.1e+02 Score=22.04 Aligned_cols=31 Identities=10% Similarity=0.088 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhccCCCceEEEEeCccceeE
Q psy1880 24 KAISQHFLREFNRQFKPNWHCVVGHCYGACV 54 (81)
Q Consensus 24 k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~v 54 (81)
..-|+.|++.|.+++|..=-|||..++|.-.
T Consensus 125 d~sA~~ir~~l~~~~g~~v~VIItDt~gr~~ 155 (243)
T TIGR01916 125 DASAEKIRRGLRELTGVDVGVIITDTNGRPF 155 (243)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCCcc
Confidence 4689999999999999999999999888653
No 86
>KOG3990|consensus
Probab=27.00 E-value=58 Score=23.92 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhCCCh------HHHHHHHHHHhhc------cCCCceEE
Q psy1880 6 QSFTIAMARKILLKTNNP------KAISQHFLREFNR------QFKPNWHC 44 (81)
Q Consensus 6 q~~~~~~~~~a~~~~~~~------k~iA~~iK~~lD~------~yg~~Whc 44 (81)
-+.|...|..++++|.+. +=||.+|-..-++ +|||.-.|
T Consensus 53 t~t~CkkCah~~~kfG~P~pC~~CkiiaAF~g~kc~rctn~e~kyGpp~~C 103 (305)
T KOG3990|consen 53 TNTICKKCAHNVRKFGTPKPCQYCKIIAAFIGRKCQRCTNSEKKYGPPLLC 103 (305)
T ss_pred hhhHHHHHHHHHHhcCCCCcchhhhhhhhhccchhhhccchhhccCCchhH
Confidence 456778889999999986 4589999988887 99998765
No 87
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=26.93 E-value=1.2e+02 Score=16.70 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=24.0
Q ss_pred ChHHHHHHHHHHHHHHHhCCCh----HHHHHHHHHH
Q psy1880 2 TKPMQSFTIAMARKILLKTNNP----KAISQHFLRE 33 (81)
Q Consensus 2 ~~~mq~~~~~~~~~a~~~~~~~----k~iA~~iK~~ 33 (81)
+-+-|+.|++.+.+.+..=-+. +-+|+.|+..
T Consensus 9 tHeeQQ~AvE~Iq~LMaqGmSsgEAI~~VA~~iRe~ 44 (51)
T PF03701_consen 9 THEEQQQAVERIQELMAQGMSSGEAIAIVAQEIREE 44 (51)
T ss_pred CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 5678999999999999875443 3467777754
No 88
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=26.69 E-value=57 Score=22.80 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=18.2
Q ss_pred cCCCceEEEEeCccceeEEeccCcEEE
Q psy1880 37 QFKPNWHCVVGHCYGACVSFQKGSFMY 63 (81)
Q Consensus 37 ~yg~~WhciVG~~Fgs~vth~~~~~i~ 63 (81)
-+-|.||+|--++++.. |+.|-..+
T Consensus 22 l~SPsWQvv~~~e~~~~--h~hGLW~d 46 (211)
T PF07062_consen 22 LFSPSWQVVNIREFRAY--HQHGLWLD 46 (211)
T ss_pred HcCCceEEEEecccCcE--Eecceeee
Confidence 35799999888999988 45454443
No 89
>PF15571 Imm25: Immunity protein 25
Probab=26.67 E-value=48 Score=21.51 Aligned_cols=22 Identities=5% Similarity=0.093 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhccCCCceEEE
Q psy1880 24 KAISQHFLREFNRQFKPNWHCV 45 (81)
Q Consensus 24 k~iA~~iK~~lD~~yg~~Whci 45 (81)
.+++..||+.+|..||..|+-|
T Consensus 18 r~~r~~Ik~~~~~~~g~~~~~I 39 (124)
T PF15571_consen 18 REIRNEIKELNDNLYGIEIESI 39 (124)
T ss_pred HHHHHHHHHHHccccccchhhh
Confidence 4678889999999999988754
No 90
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=26.42 E-value=86 Score=22.76 Aligned_cols=26 Identities=12% Similarity=0.280 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHhhccCCCceEEEEeC
Q psy1880 23 PKAISQHFLREFNRQFKPNWHCVVGH 48 (81)
Q Consensus 23 ~k~iA~~iK~~lD~~yg~~WhciVG~ 48 (81)
++..|+.|++.|.+++|+.+.|.|-.
T Consensus 12 H~~aa~al~~~~~~~~~~~~~v~~~d 37 (382)
T PLN02605 12 HRASAEAIKDAFQLEFGDEYQVFIVD 37 (382)
T ss_pred hHHHHHHHHHHHHhhcCCCeeEEEEe
Confidence 46789999999999888889977743
No 91
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=26.39 E-value=1.9e+02 Score=20.64 Aligned_cols=46 Identities=9% Similarity=0.024 Sum_probs=31.1
Q ss_pred CChHHHHHHHHHHHHH------------H--HhCCChHHHHHHHHHHhhccCCCceEEEE-eCc
Q psy1880 1 MTKPMQSFTIAMARKI------------L--LKTNNPKAISQHFLREFNRQFKPNWHCVV-GHC 49 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a------------~--~~~~~~k~iA~~iK~~lD~~yg~~WhciV-G~~ 49 (81)
||++.+..+++.+.+. - ..-.+..+..+.+++.||. +.|.+|| ++.
T Consensus 97 i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeA---GA~~ViiEarE 157 (237)
T TIGR03849 97 ISLEERCNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRIKLINKDLEA---GADYVIIEGRE 157 (237)
T ss_pred CCHHHHHHHHHHHHhCCCeEeccccccCCcccccCCHHHHHHHHHHHHHC---CCcEEEEeehh
Confidence 6888888888888743 1 1111234678888888984 7888888 543
No 92
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=26.31 E-value=36 Score=21.54 Aligned_cols=27 Identities=11% Similarity=0.079 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhccCCCceEEEEeCccceeEE
Q psy1880 24 KAISQHFLREFNRQFKPNWHCVVGHCYGACVS 55 (81)
Q Consensus 24 k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~vt 55 (81)
.++++.++..+++ -..+||.|+|+.+.
T Consensus 53 ~~~~~~~~~~~~~-----~~~lvG~S~Gg~~a 79 (245)
T TIGR01738 53 ADAAEAIAAQAPD-----PAIWLGWSLGGLVA 79 (245)
T ss_pred HHHHHHHHHhCCC-----CeEEEEEcHHHHHH
Confidence 4677777776653 24688999998764
No 93
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=26.22 E-value=34 Score=20.85 Aligned_cols=15 Identities=27% Similarity=0.273 Sum_probs=10.3
Q ss_pred ceEEEEeCccceeEE
Q psy1880 41 NWHCVVGHCYGACVS 55 (81)
Q Consensus 41 ~WhciVG~~Fgs~vt 55 (81)
.+-.|.|++||+=-|
T Consensus 18 ~~ilVaG~nfG~GSS 32 (91)
T cd01577 18 GDIIVAGKNFGCGSS 32 (91)
T ss_pred CCEEEecCcccCCCc
Confidence 456677889997433
No 94
>TIGR03384 betaine_BetI transcriptional repressor BetI. BetI is a DNA-binding transcriptional repressor of the bet (betaine) regulon. In sequence, it is related to TetR (pfam00440). Choline, through BetI, induces the expression of the betaine biosynthesis genes betA and betB by derepression. The choline porter gene betT is also part of this regulon in Escherichia coli. Note that a different transcriptional regulator, ArcA, controls the expression of bet regulon genes in response to oxygen, as BetA is an oxygen-dependent enzyme.
Probab=26.19 E-value=1.4e+02 Score=18.79 Aligned_cols=22 Identities=9% Similarity=-0.028 Sum_probs=17.5
Q ss_pred CChHHHHHHHHHHHHHHHhCCC
Q psy1880 1 MTKPMQSFTIAMARKILLKTNN 22 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~~~~ 22 (81)
|.++.++.|++.|.+.+.+..-
T Consensus 5 ~~~~rr~~Il~aA~~lf~~~G~ 26 (189)
T TIGR03384 5 MEPIRRAELIDATIESIGERGS 26 (189)
T ss_pred chhHHHHHHHHHHHHHHHhcCc
Confidence 4567888999999999888653
No 95
>PRK08596 acetylornithine deacetylase; Validated
Probab=25.79 E-value=1.3e+02 Score=22.23 Aligned_cols=34 Identities=3% Similarity=0.050 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhCC------ChHHHHHHHHHHhhcc
Q psy1880 4 PMQSFTIAMARKILLKTN------NPKAISQHFLREFNRQ 37 (81)
Q Consensus 4 ~mq~~~~~~~~~a~~~~~------~~k~iA~~iK~~lD~~ 37 (81)
++++++++..++.++--+ .++++|++|+.+|++.
T Consensus 10 ~~~~~~~~~l~~Lv~i~S~s~~~~~e~~~a~~l~~~l~~~ 49 (421)
T PRK08596 10 LRKDELLELLKTLVRFETPAPPARNTNEAQEFIAEFLRKL 49 (421)
T ss_pred hhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHC
Confidence 455677777777777432 3567999999999874
No 96
>PF13565 HTH_32: Homeodomain-like domain
Probab=25.60 E-value=1.3e+02 Score=16.53 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=17.0
Q ss_pred HHHHHHhCC--ChHHHHHHHHHHhhccC
Q psy1880 13 ARKILLKTN--NPKAISQHFLREFNRQF 38 (81)
Q Consensus 13 ~~~a~~~~~--~~k~iA~~iK~~lD~~y 38 (81)
+.+.+...+ +..+||+.|++.+...+
T Consensus 39 i~~~~~~~p~wt~~~i~~~L~~~~g~~~ 66 (77)
T PF13565_consen 39 IIALIEEHPRWTPREIAEYLEEEFGISV 66 (77)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHhCCCC
Confidence 334444443 35789999999887655
No 97
>COG3056 Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=25.36 E-value=1.5e+02 Score=20.75 Aligned_cols=32 Identities=0% Similarity=0.099 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHh
Q psy1880 3 KPMQSFTIAMARKILLKTNNPKAISQHFLREF 34 (81)
Q Consensus 3 ~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~l 34 (81)
+|.+.-+-+...+.++....+.+++.+||+.+
T Consensus 172 ~eI~~vln~v~ndvi~~i~qD~ev~~~i~q~a 203 (204)
T COG3056 172 DEIADVLNSVLNDVIADIAQDTEVANFIKQNA 203 (204)
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHhc
Confidence 45555555566667777777889999999865
No 98
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=25.36 E-value=1.9e+02 Score=22.38 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=33.4
Q ss_pred HHHHHHhhccCCCceEEEEeCccceeEEeccCcEEEEEeCCEEEEEEeeC
Q psy1880 28 QHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMGPFSILLFKIQ 77 (81)
Q Consensus 28 ~~iK~~lD~~yg~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~illfk~~ 77 (81)
+....++++-|.++|+.|-=. |-+ -+++.|+-+.+++..++|+|-.
T Consensus 25 ~if~~E~~~IF~~~W~~v~h~---sel-p~~GDy~t~~ig~~pviv~R~~ 70 (438)
T TIGR03228 25 ELFDLEMELIFEKNWIYACHE---SEL-PNNHDFVTVRAGRQPMIVTRDG 70 (438)
T ss_pred HHHHHHHHHHHhhCCEEEEEH---HHC-CCCCCeEEEEECCeEEEEEECC
Confidence 344577888899999987532 222 3457788899999999999864
No 99
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=25.22 E-value=91 Score=22.83 Aligned_cols=26 Identities=8% Similarity=0.109 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHhhccCCCceEEEEeC
Q psy1880 23 PKAISQHFLREFNRQFKPNWHCVVGH 48 (81)
Q Consensus 23 ~k~iA~~iK~~lD~~yg~~WhciVG~ 48 (81)
+...|+.|++.|.++..+.|+|.|-.
T Consensus 19 H~~aA~al~~~~~~~~~~~~~~~~~D 44 (391)
T PRK13608 19 HMQVTQSIVNQLNDMNLDHLSVIEHD 44 (391)
T ss_pred HHHHHHHHHHHHHhhCCCCceEEEee
Confidence 46789999999999877779999764
No 100
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=25.13 E-value=28 Score=21.60 Aligned_cols=11 Identities=27% Similarity=0.739 Sum_probs=6.2
Q ss_pred hccCCCceEEE
Q psy1880 35 NRQFKPNWHCV 45 (81)
Q Consensus 35 D~~yg~~Whci 45 (81)
-.|||=+|++|
T Consensus 106 ~DkFGv~Wqiv 116 (116)
T PF06983_consen 106 TDKFGVSWQIV 116 (116)
T ss_dssp E-TTS-EEEEE
T ss_pred EeCCCCEEEeC
Confidence 34677777775
No 101
>CHL00168 pbsA heme oxygenase; Provisional
Probab=24.99 E-value=1.2e+02 Score=21.52 Aligned_cols=35 Identities=11% Similarity=0.103 Sum_probs=24.4
Q ss_pred CChHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHhh
Q psy1880 1 MTKPMQSFTIAMARKILLKTNN-PKAISQHFLREFN 35 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~~~~-~k~iA~~iK~~lD 35 (81)
++++.++.+++.|..|+..... -++++..+++.+.
T Consensus 181 l~e~e~~~iI~EA~~AF~lN~~vf~eL~~~~~~~~~ 216 (238)
T CHL00168 181 LSDDQIQNIIAEANIAFNLNMKMFQELNSSFIKIIT 216 (238)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999987554 3455555554443
No 102
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=24.97 E-value=1.5e+02 Score=17.42 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhhccCCCceEEEEeCc
Q psy1880 24 KAISQHFLREFNRQFKPNWHCVVGHC 49 (81)
Q Consensus 24 k~iA~~iK~~lD~~yg~~WhciVG~~ 49 (81)
+.+.+.|+.-+++.+ +.|.+||..+
T Consensus 10 ~~l~~~l~sl~~q~~-~~~~iivvdd 34 (180)
T cd06423 10 AVIERTIESLLALDY-PKLEVIVVDD 34 (180)
T ss_pred HHHHHHHHHHHhCCC-CceEEEEEeC
Confidence 345555555555554 5666666543
No 103
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=24.96 E-value=1.2e+02 Score=21.68 Aligned_cols=33 Identities=3% Similarity=0.029 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhCC---ChHHHHHHHHHHhhcc
Q psy1880 5 MQSFTIAMARKILLKTN---NPKAISQHFLREFNRQ 37 (81)
Q Consensus 5 mq~~~~~~~~~a~~~~~---~~k~iA~~iK~~lD~~ 37 (81)
|+.++++..++.++--+ .+.++|++|++.|++.
T Consensus 4 ~~~~~~~~l~~Lv~i~s~s~~e~~~~~~l~~~l~~~ 39 (348)
T PRK04443 4 SALEARELLKGLVEIPSPSGEEAAAAEFLVEFMESH 39 (348)
T ss_pred chHHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHc
Confidence 56777787777776533 3678999999999874
No 104
>PF13382 Adenine_deam_C: Adenine deaminase C-terminal domain; PDB: 3T8L_B 3T81_A 3NQB_A.
Probab=24.88 E-value=46 Score=22.45 Aligned_cols=28 Identities=7% Similarity=0.109 Sum_probs=12.8
Q ss_pred ccCCCceEEEEe--Cc-------cceeEEeccCcEEE
Q psy1880 36 RQFKPNWHCVVG--HC-------YGACVSFQKGSFMY 63 (81)
Q Consensus 36 ~~yg~~WhciVG--~~-------Fgs~vth~~~~~i~ 63 (81)
.+||++=++.+| +. ++|+++|+..+.+-
T Consensus 34 ~R~~~~g~~~~g~v~Gfg~~~GAiAsS~ahDshniiv 70 (171)
T PF13382_consen 34 ERHGGTGNIGIGFVKGFGLKRGAIASSVAHDSHNIIV 70 (171)
T ss_dssp --SSSS--EEEEEEESS--BSSEEEES--TTT--EEE
T ss_pred EcCCCCCCEEEEEEeCCcccCCeEEEEcccCCCCEEE
Confidence 467773255555 34 45889998887764
No 105
>TIGR00199 cinA_cterm competence/damage-inducible protein CinA C-terminal domain. CinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species. Several bacterial species have a protein consisting largely of the C-terminal domain of CinA but lacking the N-terminal domain.
Probab=24.85 E-value=1.9e+02 Score=18.81 Aligned_cols=45 Identities=4% Similarity=0.135 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHhhccCCCceEEEEe
Q psy1880 3 KPMQSFTIAMARKILLKTNN-PKAISQHFLREFNRQFKPNWHCVVG 47 (81)
Q Consensus 3 ~~mq~~~~~~~~~a~~~~~~-~k~iA~~iK~~lD~~yg~~WhciVG 47 (81)
.+++...+..-.+.+++|.. ..++|..+-+..-++++..|-+-+.
T Consensus 46 ~~~K~~lLgV~~~~i~~~gavS~e~a~~MA~g~~~~~~adi~ia~T 91 (146)
T TIGR00199 46 NQVKINLLGVSQETLARFGAVSEECAAEMALGVKERFGADVGIAIS 91 (146)
T ss_pred HHHHHHHhCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCEEEEee
Confidence 45667777777778888875 3456666665556666777777775
No 106
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=24.79 E-value=1.4e+02 Score=19.14 Aligned_cols=29 Identities=7% Similarity=-0.066 Sum_probs=20.9
Q ss_pred CCChHHHHHHHHHHhhccCCCceEEEEeCc
Q psy1880 20 TNNPKAISQHFLREFNRQFKPNWHCVVGHC 49 (81)
Q Consensus 20 ~~~~k~iA~~iK~~lD~~yg~~WhciVG~~ 49 (81)
|+.+..+.+.|+.-+.+.+ +.+.+||..+
T Consensus 8 ~n~~~~l~~~l~sl~~q~~-~~~evivvdd 36 (221)
T cd02522 8 LNEAENLPRLLASLRRLNP-LPLEIIVVDG 36 (221)
T ss_pred cCcHHHHHHHHHHHHhccC-CCcEEEEEeC
Confidence 3445567778888777777 7888888754
No 107
>cd05391 RasGAP_p120GAP p120GAP is a negative regulator of Ras that stimulates hydrolysis of bound GTP to GDP. Once the Ras regulator p120GAP, a member of the GAP protein family, is recruited to the membrane, it is transiently immobilized to interact with Ras-GTP. The down regulation of Ras by p120GAP is a critical step in the regulation of many cellular processes, which is disrupted in approximately 30% of human cancers. p120GAP contains SH2, SH3, PH, calcium- and lipid-binding domains, suggesting its involvement in a complex network of cellular interactions in vivo.
Probab=24.64 E-value=53 Score=24.21 Aligned_cols=32 Identities=6% Similarity=-0.084 Sum_probs=22.9
Q ss_pred HHHHHHHhCCCh-HHHHHHHHHHhhccCCCceE
Q psy1880 12 MARKILLKTNNP-KAISQHFLREFNRQFKPNWH 43 (81)
Q Consensus 12 ~~~~a~~~~~~~-k~iA~~iK~~lD~~yg~~Wh 43 (81)
....+.+.++.. +.|+..|++.+.++|...+.
T Consensus 138 ~I~~S~~~~P~~lr~i~~~l~~~v~~kfp~~~~ 170 (315)
T cd05391 138 KIFMAAEILPPTLRYIYGCLQKSVQAKWPTNTT 170 (315)
T ss_pred HHHHhHHhCCHHHHHHHHHHHHHHHHHCCCchh
Confidence 333344445543 68999999999999987764
No 108
>PF05696 DUF826: Protein of unknown function (DUF826); InterPro: IPR008544 This entry is represented by Bacteriophage 933W, Orf26. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.48 E-value=1.2e+02 Score=18.09 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=10.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhhc
Q psy1880 12 MARKILLKTNNPKAISQHFLREFNR 36 (81)
Q Consensus 12 ~~~~a~~~~~~~k~iA~~iK~~lD~ 36 (81)
.+++|++.-.....+-+.||+.||.
T Consensus 12 ~VK~aL~Se~V~~alK~qvr~~le~ 36 (78)
T PF05696_consen 12 AVKQALRSEEVTSALKQQVRQNLEA 36 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554222122344555555554
No 109
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=24.46 E-value=50 Score=24.71 Aligned_cols=33 Identities=12% Similarity=0.030 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhhccCCCceEEEEeCccceeEE
Q psy1880 23 PKAISQHFLREFNRQFKPNWHCVVGHCYGACVS 55 (81)
Q Consensus 23 ~k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~vt 55 (81)
-.|+|+.+..-+|+.--...++|||.|.|+.++
T Consensus 143 ~~d~~~~~~~ll~~lgi~~~~~vvG~SmGG~ia 175 (389)
T PRK06765 143 ILDFVRVQKELIKSLGIARLHAVMGPSMGGMQA 175 (389)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEECHHHHHH
Confidence 468899999999876555678899999997654
No 110
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=24.45 E-value=1.3e+02 Score=19.76 Aligned_cols=28 Identities=7% Similarity=0.049 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhccCCCceEEEEeCcccee
Q psy1880 24 KAISQHFLREFNRQFKPNWHCVVGHCYGAC 53 (81)
Q Consensus 24 k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~ 53 (81)
.+.|+.|.++.+.- +.=.-|||..+|-.
T Consensus 81 ~~fA~~l~~~~~~g--~~i~FvIGGa~G~~ 108 (153)
T TIGR00246 81 PQLADTLEKWKTDG--RDVTLLIGGPEGLS 108 (153)
T ss_pred HHHHHHHHHHhccC--CeEEEEEcCCCcCC
Confidence 47999999997665 45677889888854
No 111
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=24.39 E-value=1.2e+02 Score=21.71 Aligned_cols=30 Identities=3% Similarity=0.020 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhccCCCceEEEEeCcccee
Q psy1880 24 KAISQHFLREFNRQFKPNWHCVVGHCYGAC 53 (81)
Q Consensus 24 k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~ 53 (81)
..-|+.|++.|.+++|..=-|||..+||.-
T Consensus 126 d~SA~~ir~~l~~~~g~~v~VIItDt~gr~ 155 (245)
T PRK13293 126 DESAERIREGLEELTGKKVGVIITDTNGRP 155 (245)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEcCCCcc
Confidence 468999999999999999999999999843
No 112
>KOG2470|consensus
Probab=24.22 E-value=95 Score=24.17 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhCCCh-HHHHHHHHHHhhccCCCceEEEEe
Q psy1880 4 PMQSFTIAMARKILLKTNNP-KAISQHFLREFNRQFKPNWHCVVG 47 (81)
Q Consensus 4 ~mq~~~~~~~~~a~~~~~~~-k~iA~~iK~~lD~~yg~~WhciVG 47 (81)
.||..--+.++..++....+ +++-...|+-|+..||++..---+
T Consensus 406 r~q~~rseasq~~L~ew~~eRq~lR~~tK~~FN~qFGs~FrT~~n 450 (510)
T KOG2470|consen 406 RMQAQRSEASQSVLDEWMKERQELRDTTKQMFNAQFGSTFRTDHN 450 (510)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeccCC
Confidence 34444444555555655555 367888999999999987644333
No 113
>PRK10018 putative glycosyl transferase; Provisional
Probab=24.19 E-value=1.4e+02 Score=21.23 Aligned_cols=29 Identities=10% Similarity=0.271 Sum_probs=20.9
Q ss_pred CCChHHHHHHHHHHhhccCCCceEEEEeCc
Q psy1880 20 TNNPKAISQHFLREFNRQFKPNWHCVVGHC 49 (81)
Q Consensus 20 ~~~~k~iA~~iK~~lD~~yg~~WhciVG~~ 49 (81)
|+.+..+.+.|..-+.+.| +.|.+||..+
T Consensus 14 yN~~~~l~~~l~Svl~Qt~-~~~EiIVVDD 42 (279)
T PRK10018 14 WNRQQLAIRAIKSVLRQDY-SNWEMIIVDD 42 (279)
T ss_pred CCCHHHHHHHHHHHHhCCC-CCeEEEEEEC
Confidence 4445567777888888877 5699998765
No 114
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=24.01 E-value=51 Score=20.36 Aligned_cols=31 Identities=13% Similarity=0.229 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhccCCCceEEEEeCccceeEE
Q psy1880 24 KAISQHFLREFNRQFKPNWHCVVGHCYGACVS 55 (81)
Q Consensus 24 k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~vt 55 (81)
.+.|+.|...+|+.-.+.. ++||.|+|+.++
T Consensus 50 ~~~~~~l~~~l~~~~~~~~-~lvG~S~Gg~~a 80 (228)
T PF12697_consen 50 EDYAEDLAELLDALGIKKV-ILVGHSMGGMIA 80 (228)
T ss_dssp HHHHHHHHHHHHHTTTSSE-EEEEETHHHHHH
T ss_pred hhhhhhhhhcccccccccc-cccccccccccc
Confidence 4567777777777655555 468999997653
No 115
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=23.97 E-value=87 Score=18.40 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=16.5
Q ss_pred HhhccCCCceEEEEeCc-cceeEEec
Q psy1880 33 EFNRQFKPNWHCVVGHC-YGACVSFQ 57 (81)
Q Consensus 33 ~lD~~yg~~WhciVG~~-Fgs~vth~ 57 (81)
.|+++-|+.||+.|-.. =|..+.+.
T Consensus 40 ~m~~~~~gvw~~~v~~~~~g~~Y~y~ 65 (100)
T cd02860 40 QMKRGENGVWSVTLDGDLEGYYYLYE 65 (100)
T ss_pred eeecCCCCEEEEEeCCccCCcEEEEE
Confidence 46677899999999643 24444443
No 116
>COG1498 SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and biogenesis]
Probab=23.84 E-value=1.1e+02 Score=23.51 Aligned_cols=36 Identities=8% Similarity=0.019 Sum_probs=28.2
Q ss_pred CChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhc
Q psy1880 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNR 36 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD~ 36 (81)
|++.+...+..+|....+.+..-+++.++|...|+.
T Consensus 204 ~~~~Di~~i~~~ae~i~~L~~~R~~l~~Yi~~~M~~ 239 (395)
T COG1498 204 LSEEDIDNIRELAEIILELYELREQLEEYIESKMSE 239 (395)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888888888777767888888888765
No 117
>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain. eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.
Probab=23.75 E-value=1.6e+02 Score=17.01 Aligned_cols=27 Identities=11% Similarity=0.190 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHhhccCCCceEEEEeCccc
Q psy1880 23 PKAISQHFLREFNRQFKPNWHCVVGHCYG 51 (81)
Q Consensus 23 ~k~iA~~iK~~lD~~yg~~WhciVG~~Fg 51 (81)
+.++++.|++.|+. |..=.|.|-+.-|
T Consensus 33 ~~elg~~I~~~f~~--gk~~~vtV~samG 59 (69)
T cd04468 33 EGELGKEIREKFDE--GKDVLVTVLSAMG 59 (69)
T ss_pred cHHHHHHHHHHHhC--CCcEEEEEEccCC
Confidence 46899999999988 7888888766555
No 118
>PRK10812 putative DNAse; Provisional
Probab=23.72 E-value=2.7e+02 Score=19.63 Aligned_cols=46 Identities=15% Similarity=0.021 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHhCCC---------hHHHHHHHHHHhhccCCCceEEEEeC
Q psy1880 3 KPMQSFTIAMARKILLKTNN---------PKAISQHFLREFNRQFKPNWHCVVGH 48 (81)
Q Consensus 3 ~~mq~~~~~~~~~a~~~~~~---------~k~iA~~iK~~lD~~yg~~WhciVG~ 48 (81)
.+.|.++.+...++-.+++. ..++.+-||+.--...++..||.-|.
T Consensus 106 ~~~Q~~vf~~ql~lA~e~~~Pv~iH~r~a~~~~l~iL~~~~~~~~~~v~H~fsG~ 160 (265)
T PRK10812 106 KVRQQESFRHHIQIGRELNKPVIVHTRDARADTLAILREEKVTDCGGVLHCFTED 160 (265)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEeeCchHHHHHHHHhhcCCCCCEEEEeecCC
Confidence 46788888877777777654 24677777764222346678887664
No 119
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=23.67 E-value=58 Score=19.71 Aligned_cols=14 Identities=14% Similarity=0.088 Sum_probs=9.2
Q ss_pred ceEEEEeCccceeE
Q psy1880 41 NWHCVVGHCYGACV 54 (81)
Q Consensus 41 ~WhciVG~~Fgs~v 54 (81)
.+-+|.|++||+=-
T Consensus 16 ~~iiVaG~nfG~GS 29 (88)
T cd00404 16 PGVVIGDENYGTGS 29 (88)
T ss_pred CEEEEecCCeecCC
Confidence 55566677998643
No 120
>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]
Probab=23.65 E-value=42 Score=23.33 Aligned_cols=15 Identities=27% Similarity=0.260 Sum_probs=10.1
Q ss_pred ceEEEEeCccceeEE
Q psy1880 41 NWHCVVGHCYGACVS 55 (81)
Q Consensus 41 ~WhciVG~~Fgs~vt 55 (81)
.=-.|+|+||||=-|
T Consensus 63 g~IlVag~NFGcGSS 77 (191)
T COG0066 63 GDILVAGENFGCGSS 77 (191)
T ss_pred ccEEEecCCCCCCcc
Confidence 445667889997543
No 121
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=23.24 E-value=75 Score=20.12 Aligned_cols=30 Identities=13% Similarity=0.115 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhccCCCceEEEEeCccceeE
Q psy1880 24 KAISQHFLREFNRQFKPNWHCVVGHCYGACV 54 (81)
Q Consensus 24 k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~v 54 (81)
.++++.+...+++.=... ..+||.|+|+.+
T Consensus 28 ~~~~~~~~~~~~~l~~~~-~~~vG~S~Gg~~ 57 (230)
T PF00561_consen 28 DDLAADLEALREALGIKK-INLVGHSMGGML 57 (230)
T ss_dssp HHHHHHHHHHHHHHTTSS-EEEEEETHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC-eEEEEECCChHH
Confidence 578888888888654445 677899999754
No 122
>PF02464 CinA: Competence-damaged protein; InterPro: IPR008136 CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation []. This is a C-terminal region of putative competence-damaged proteins from the cin operon.; PDB: 2A9S_A.
Probab=23.20 E-value=2.2e+02 Score=18.48 Aligned_cols=45 Identities=7% Similarity=0.189 Sum_probs=32.0
Q ss_pred ChHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHhhccCCCceEEEE
Q psy1880 2 TKPMQSFTIAMARKILLKTNN-PKAISQHFLREFNRQFKPNWHCVV 46 (81)
Q Consensus 2 ~~~mq~~~~~~~~~a~~~~~~-~k~iA~~iK~~lD~~yg~~WhciV 46 (81)
+.+++.+.+.+-.+.+++|.. ..++|..+-+..-+++|..|-+-+
T Consensus 51 s~~~K~~~LgV~~~~i~~~g~vS~e~A~~MA~~~~~~~~adi~lA~ 96 (154)
T PF02464_consen 51 SNEAKQKLLGVSPETIEKYGAVSEEVARAMARGARKRFGADIGLAI 96 (154)
T ss_dssp SHHHHHHHH---HHHHHHH-SSSHHHHHHHHHHHHHTSS-SEEEEE
T ss_pred cHHHHhhhcCcCHHHHHHcCCCcHHHHHHHHHHHHHHhCCCEEEEE
Confidence 357788888888899999876 456777777777888888888888
No 123
>KOG4025|consensus
Probab=22.94 E-value=64 Score=22.33 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhc
Q psy1880 24 KAISQHFLREFNR 36 (81)
Q Consensus 24 k~iA~~iK~~lD~ 36 (81)
|+||..||+-||.
T Consensus 127 K~IASaIKkLLd~ 139 (207)
T KOG4025|consen 127 KLIASAIKKLLDA 139 (207)
T ss_pred HHHHHHHHHHHHH
Confidence 6899999999994
No 124
>TIGR02735 purC_vibrio phosphoribosylaminoimidazole-succinocarboxamide synthase, Vibrio type. Members of this protein family appear to represent a novel form of phosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR synthetase), significantly different in sequence and gap pattern from a form (see TIGR00081) shared by a broad range of bacteria and eukaryotes. Members of this family are found within the gammaproteobacteria in the genera Vibrio, Shewanella, and Colwellia, and also (reported as a fragment) in the primitive eukarote Guillardia theta.
Probab=22.80 E-value=1.2e+02 Score=23.16 Aligned_cols=39 Identities=8% Similarity=-0.019 Sum_probs=30.4
Q ss_pred CChHHHHHHHHHHHHHHHhCCC-----hHHHHHHHHHHhhccCC
Q psy1880 1 MTKPMQSFTIAMARKILLKTNN-----PKAISQHFLREFNRQFK 39 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~~~~-----~k~iA~~iK~~lD~~yg 39 (81)
||+++-+++.+.-.++.++.+. ..+..+.|.+.|+..||
T Consensus 320 LP~evv~~~s~~Y~~~~e~iTG~~~~~~~~~~~~i~~~~~~~~~ 363 (365)
T TIGR02735 320 LPQEMLMDVSETYLGIAEKITGSSITLSENPKAEIKAILSVEYG 363 (365)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHhhC
Confidence 6788888888888888887543 24577888888888887
No 125
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=22.75 E-value=2.6e+02 Score=20.68 Aligned_cols=15 Identities=13% Similarity=0.532 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhhccC
Q psy1880 24 KAISQHFLREFNRQF 38 (81)
Q Consensus 24 k~iA~~iK~~lD~~y 38 (81)
++.|+.||+.|+++|
T Consensus 195 ~~~A~~lk~~F~~~F 209 (370)
T PF06202_consen 195 REWAERLKESFEKRF 209 (370)
T ss_pred HHHHHHHHHHHHHHH
Confidence 478999999999998
No 126
>PHA02590 hypothetical protein; Provisional
Probab=22.74 E-value=2e+02 Score=17.95 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCh-----HHHHHHHHHHhhccCCC
Q psy1880 3 KPMQSFTIAMARKILLKTNNP-----KAISQHFLREFNRQFKP 40 (81)
Q Consensus 3 ~~mq~~~~~~~~~a~~~~~~~-----k~iA~~iK~~lD~~yg~ 40 (81)
++||++++++|..-.++-+.. +-|++.|=+.+.+-||-
T Consensus 4 e~~~e~Vi~LaqKY~~~k~il~~IRr~~ie~KII~~i~~fY~i 46 (105)
T PHA02590 4 EEMQEKVINLAQKYTNQKRILRLIRRSNIEEKIIKEISEFYGI 46 (105)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 578888888876542221111 23555666666666665
No 127
>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain. This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=22.63 E-value=53 Score=22.45 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=13.8
Q ss_pred CCCceEEEEeCccceeE
Q psy1880 38 FKPNWHCVVGHCYGACV 54 (81)
Q Consensus 38 yg~~WhciVG~~Fgs~v 54 (81)
-|-.|-+|.|++||+=-
T Consensus 94 ~g~plIIvaG~nfG~GS 110 (171)
T cd01580 94 EGVPLVILAGKEYGSGS 110 (171)
T ss_pred cCCcEEEEccCcccCCC
Confidence 37899999999999643
No 128
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=22.60 E-value=1.6e+02 Score=18.55 Aligned_cols=17 Identities=12% Similarity=0.088 Sum_probs=12.7
Q ss_pred ChHHHHHHHHHHHHHHH
Q psy1880 2 TKPMQSFTIAMARKILL 18 (81)
Q Consensus 2 ~~~mq~~~~~~~~~a~~ 18 (81)
+++.|++|+.+|+..-+
T Consensus 1 S~eTq~EAmkiAKatQK 17 (103)
T PF11169_consen 1 SPETQQEAMKIAKATQK 17 (103)
T ss_pred ChHHHHHHHHHHHhhcC
Confidence 46789999998876443
No 129
>PF00817 IMS: impB/mucB/samB family; InterPro: IPR001126 In Escherichia coli, UV and many chemicals appear to cause mutagenesis by a process of translesion synthesis that requires DNA polymerase III and the SOS-regulated proteins UmuD, UmuC and RecA. This machinery allows the replication to continue through DNA lesion, and therefore avoid lethal interruption of DNA replication after DNA damage []. UmuC is a well conserved protein in prokaryotes, with a homologue in yeast species. Proteins currently known to belong to this family are listed below: E. coli MucB protein. Plasmid-born analogue of the UmuC protein. Saccharomyces cerevisiae (Baker's yeast) Rev1 protein. Homologue of UmuC also required for normal induction of mutations by physical and chemical agents. Salmonella typhimurium ImpB protein. Plasmid-born analogue of the UmuC protein. Bacterial UmuC protein. E. coli DNA-damage-inducible protein P (DinP). S. typhimurium SamB homologue of UmuC plasmid associated. ; GO: 0003684 damaged DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006281 DNA repair; PDB: 3BJY_A 2AQ4_A 3OSP_A 4DL7_A 4DL6_A 3TQ1_A 3MR2_A 4EEY_A 3MR3_A 4DL4_A ....
Probab=22.45 E-value=81 Score=19.90 Aligned_cols=26 Identities=4% Similarity=0.017 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhccCCCceEEEEeCc
Q psy1880 24 KAISQHFLREFNRQFKPNWHCVVGHC 49 (81)
Q Consensus 24 k~iA~~iK~~lD~~yg~~WhciVG~~ 49 (81)
.++++.|++.+-.+.|=++++-||.+
T Consensus 115 ~~~~~~l~~~i~~~~gl~~s~Gia~~ 140 (149)
T PF00817_consen 115 EALARRLRQAIAEETGLTASIGIAPN 140 (149)
T ss_dssp HHHHHHHHHHHHHHHS--EEEEEESS
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 47899999999999998888888875
No 130
>TIGR01641 phageSPP1_gp7 phage putative head morphogenesis protein, SPP1 gp7 family. This model describes a region of about 110 amino acids found exclusively in phage-related proteins, internally or toward the C-terminus. One member, gp7 of phage SPP1, appears involved in head morphogenesis.
Probab=22.26 E-value=1.4e+02 Score=17.72 Aligned_cols=21 Identities=10% Similarity=0.289 Sum_probs=9.8
Q ss_pred HHHHhCCChHHHHHHHHHHhh
Q psy1880 15 KILLKTNNPKAISQHFLREFN 35 (81)
Q Consensus 15 ~a~~~~~~~k~iA~~iK~~lD 35 (81)
+++..=.+.++||+.|++.|+
T Consensus 7 ~gi~~G~~~~~iak~i~~~~~ 27 (108)
T TIGR01641 7 DGVQRGLGPNELAKRLRKELG 27 (108)
T ss_pred HHHHcCCCHHHHHHHHHHHHC
Confidence 344433344455555555543
No 131
>TIGR00171 leuD 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The candidate archaeal leuD proteins are not included in the seed alignment for this model and score below the trusted cutoff.
Probab=22.13 E-value=41 Score=23.13 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=8.2
Q ss_pred EEEeCccceeEE
Q psy1880 44 CVVGHCYGACVS 55 (81)
Q Consensus 44 ciVG~~Fgs~vt 55 (81)
.|.|+||||=-|
T Consensus 73 lVaG~NFGcGSS 84 (188)
T TIGR00171 73 LLARENFGCGSS 84 (188)
T ss_pred EEcCCcccCCCc
Confidence 455789997543
No 132
>PF13592 HTH_33: Winged helix-turn helix
Probab=21.91 E-value=71 Score=17.32 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHhhccCC
Q psy1880 23 PKAISQHFLREFNRQFK 39 (81)
Q Consensus 23 ~k~iA~~iK~~lD~~yg 39 (81)
-++|+..|.+.|+.+|-
T Consensus 7 ~~~i~~~I~~~fgv~ys 23 (60)
T PF13592_consen 7 LKEIAAYIEEEFGVKYS 23 (60)
T ss_pred HHHHHHHHHHHHCCEEc
Confidence 46899999999998874
No 133
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=21.88 E-value=1.4e+02 Score=17.44 Aligned_cols=18 Identities=17% Similarity=0.562 Sum_probs=13.3
Q ss_pred ccCcEEEEEe-CCEEEEEE
Q psy1880 57 QKGSFMYLSM-GPFSILLF 74 (81)
Q Consensus 57 ~~~~~i~F~~-~~~~illf 74 (81)
+.|-|+||+. ++..+++.
T Consensus 8 ~~gvYvYfR~~~~~tVmVi 26 (78)
T PF10438_consen 8 QDGVYVYFRYYDGKTVMVI 26 (78)
T ss_dssp BTTEEEEEEEESSEEEEEE
T ss_pred cCCEEEEEEEcCCCEEEEE
Confidence 5677999997 56766654
No 134
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.87 E-value=2e+02 Score=21.10 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHhhccCCCceEEEEeCccceeEE
Q psy1880 8 FTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVS 55 (81)
Q Consensus 8 ~~~~~~~~a~~~~~~~k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~vt 55 (81)
.+.+....-+...+..++++..|+.-||. -++||--|++.|..+.+
T Consensus 133 ~aneflk~~l~~k~~lqd~~dal~elfe~--vss~tpsVskeydiy~v 178 (293)
T COG4079 133 VANEFLKDNLTKKSKLQDAVDALMELFET--VSSKTPSVSKEYDIYQV 178 (293)
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHH--hhcCCCcccceeEEEEe
Confidence 33344444344455568999999999986 47899999999887654
No 135
>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function.; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.
Probab=21.83 E-value=79 Score=20.93 Aligned_cols=39 Identities=3% Similarity=0.083 Sum_probs=21.5
Q ss_pred ChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccCCCce
Q psy1880 2 TKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNW 42 (81)
Q Consensus 2 ~~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD~~yg~~W 42 (81)
|+++++.|..+.-.|-+- ++-.++ ..|++.|-.+||+.|
T Consensus 82 p~~l~eAi~siiyAa~r~-~elpEL-~~vr~~l~~kyG~~f 120 (165)
T PF03398_consen 82 PPELKEAISSIIYAAPRC-GELPEL-QEVRKQLAEKYGKEF 120 (165)
T ss_dssp SCCHHHHHHHHHHHHHHH-TTTCCH-HHHHHHHHCCC-HHH
T ss_pred CHHHHHHHHHHHHHhhhc-cCChhH-HHHHHHHHHHhCHHH
Confidence 555666555554444443 332333 456778888888765
No 136
>PF10047 DUF2281: Protein of unknown function (DUF2281); InterPro: IPR018739 This domain is found in putative uncharacterised proteins, though some proteins contaning this domain are described as a transcritional regulator of the Xre family.
Probab=21.79 E-value=1.5e+02 Score=16.56 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=16.6
Q ss_pred CChHHHHHHHHHHHHHHHhCC
Q psy1880 1 MTKPMQSFTIAMARKILLKTN 21 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~~~ 21 (81)
+|++.|+++++.+.-...++.
T Consensus 12 LP~~~~~Evldfi~fL~~k~~ 32 (66)
T PF10047_consen 12 LPEELQQEVLDFIEFLLQKYQ 32 (66)
T ss_pred CCHHHHHHHHHHHHHHHHhcc
Confidence 578888888888887777773
No 137
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=21.56 E-value=4e+02 Score=21.32 Aligned_cols=74 Identities=14% Similarity=0.151 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHhCCC------------hHHHHHHHHHHhhccC------------CCceEEEEeCccceeEEeccC
Q psy1880 4 PMQSFTIAMARKILLKTNN------------PKAISQHFLREFNRQF------------KPNWHCVVGHCYGACVSFQKG 59 (81)
Q Consensus 4 ~mq~~~~~~~~~a~~~~~~------------~k~iA~~iK~~lD~~y------------g~~WhciVG~~Fgs~vth~~~ 59 (81)
++-.+-++...+|+++++. +.-|-.-|++.|+-.| |....|=||=.||.... ..+
T Consensus 291 ~l~~~~~~~l~~~~~~~~~~~pp~~~lspige~~i~~gl~~~~~p~f~~~~tr~p~~y~g~pfiVE~~iayGg~~~-~~~ 369 (535)
T PRK04184 291 ELTREELERLVEAFKKYKFMAPPTACLSPIGEELIEKGLKKILKPEFVAAVTRKPKVYSGHPFIVEVGIAYGGEIP-PDD 369 (535)
T ss_pred hCCHHHHHHHHHHHHhccCcCCCCccCCCCCHHHHHHHHHHhcCccEEEEeccCCcccCCCCeEEEEEeeecCCCC-CCC
Confidence 3344455566677777643 2346667777776443 55677777888888862 344
Q ss_pred cEEEEEeCCEEEEEEeeCC
Q psy1880 60 SFMYLSMGPFSILLFKIQD 78 (81)
Q Consensus 60 ~~i~F~~~~~~illfk~~~ 78 (81)
...-+++.|+.-|||..++
T Consensus 370 ~~~i~RfANrvPLl~~~g~ 388 (535)
T PRK04184 370 KPELLRFANRVPLLYDEGS 388 (535)
T ss_pred CceEEEEccCCceeecCCc
Confidence 6677889999999998765
No 138
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=21.21 E-value=53 Score=16.10 Aligned_cols=14 Identities=14% Similarity=0.358 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhccC
Q psy1880 25 AISQHFLREFNRQF 38 (81)
Q Consensus 25 ~iA~~iK~~lD~~y 38 (81)
.+|..||+++++.|
T Consensus 17 ~la~~iR~~ie~~l 30 (30)
T PF14824_consen 17 RLARLIRKEIERLL 30 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 58889999888653
No 139
>COG1539 FolB Dihydroneopterin aldolase [Coenzyme metabolism]
Probab=21.02 E-value=2.3e+02 Score=17.88 Aligned_cols=25 Identities=4% Similarity=-0.085 Sum_probs=20.3
Q ss_pred CCChHHHHHHHHHHhhccCCCceEE
Q psy1880 20 TNNPKAISQHFLREFNRQFKPNWHC 44 (81)
Q Consensus 20 ~~~~k~iA~~iK~~lD~~yg~~Whc 44 (81)
+..-..+|+.|-+.+=.+|+..|.+
T Consensus 70 ~~LiE~lA~~ia~~l~~~~~~v~~~ 94 (121)
T COG1539 70 FALIETLAEEIADLLLARFPRVELV 94 (121)
T ss_pred cchHHHHHHHHHHHHHhhCCccEEE
Confidence 3334678888888888999999998
No 140
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=20.93 E-value=2.7e+02 Score=18.69 Aligned_cols=30 Identities=23% Similarity=0.457 Sum_probs=23.8
Q ss_pred ChHHHHHHHHHHHHHHHhCCCh--HHHHHHHH
Q psy1880 2 TKPMQSFTIAMARKILLKTNNP--KAISQHFL 31 (81)
Q Consensus 2 ~~~mq~~~~~~~~~a~~~~~~~--k~iA~~iK 31 (81)
++++|..++......+.+-++. +++|+.|-
T Consensus 115 ~~~iq~naiaLinAL~~kA~~~~r~~i~~~l~ 146 (160)
T PF11841_consen 115 NQEIQTNAIALINALFLKADDSKRKEIAETLS 146 (160)
T ss_pred CHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 6789999999999999888775 36776654
No 141
>PRK07777 aminotransferase; Validated
Probab=20.87 E-value=2.1e+02 Score=20.68 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhccCCCceEEEEeC
Q psy1880 25 AISQHFLREFNRQFKPNWHCVVGH 48 (81)
Q Consensus 25 ~iA~~iK~~lD~~yg~~WhciVG~ 48 (81)
.+|+++++.+.-.+.+.|+++++.
T Consensus 69 ~ia~~~~~~~g~~~~~~~~i~~t~ 92 (387)
T PRK07777 69 AIAAQRRRRYGLEYDPDTEVLVTV 92 (387)
T ss_pred HHHHHHHHHhCCCCCCCCcEEEeC
Confidence 355555555555555668888864
No 142
>PF01996 F420_ligase: F420-0:Gamma-glutamyl ligase; InterPro: IPR002847 This entry contains F420-0:gamma-glutamyl ligase and related proteins. F420-0:gamma-glutamyl ligase catalyzes the GTP-dependent successive addition of multiple gamma-linked L-glutamates to the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) to form polyglutamated F420 derivatives [, , , ].; PDB: 2G9I_A 2PHN_A.
Probab=20.68 E-value=80 Score=22.08 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHhhccCCCceEEEEeCccce
Q psy1880 23 PKAISQHFLREFNRQFKPNWHCVVGHCYGA 52 (81)
Q Consensus 23 ~k~iA~~iK~~lD~~yg~~WhciVG~~Fgs 52 (81)
.+..|+.|++.|.+++|..=.|||..++|.
T Consensus 132 Pd~sA~~i~~~l~~~~g~~v~ViI~Dt~gr 161 (228)
T PF01996_consen 132 PDASARRIREELKERTGKDVGVIITDTNGR 161 (228)
T ss_dssp HHHHHHHHHHHHHHHHS---EEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCceEEEEECCCCc
Confidence 357999999999999999999999877763
No 143
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=20.57 E-value=2.4e+02 Score=19.22 Aligned_cols=25 Identities=16% Similarity=0.430 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHhhccCCCceEEEEe
Q psy1880 23 PKAISQHFLREFNRQFKPNWHCVVG 47 (81)
Q Consensus 23 ~k~iA~~iK~~lD~~yg~~WhciVG 47 (81)
++|-++.+|++....+.+.|+=+-|
T Consensus 115 erDtp~~lk~Y~~~~~~~~~~~ltg 139 (207)
T COG1999 115 ERDTPEVLKKYAELNFDPRWIGLTG 139 (207)
T ss_pred CCCCHHHHHHHhcccCCCCeeeeeC
Confidence 5688999999999888999999999
No 144
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=20.56 E-value=88 Score=19.71 Aligned_cols=31 Identities=10% Similarity=0.212 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhccCCCceEEEEeCccceeEE
Q psy1880 24 KAISQHFLREFNRQFKPNWHCVVGHCYGACVS 55 (81)
Q Consensus 24 k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~vt 55 (81)
.+.|+.+...+|.. +..--++||.|+|+.++
T Consensus 63 ~~~~~~~~~~i~~~-~~~~v~liG~S~Gg~~a 93 (251)
T TIGR02427 63 EDLADDVLALLDHL-GIERAVFCGLSLGGLIA 93 (251)
T ss_pred HHHHHHHHHHHHHh-CCCceEEEEeCchHHHH
Confidence 46777777777754 33335788999998653
No 145
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=20.39 E-value=41 Score=20.96 Aligned_cols=20 Identities=15% Similarity=0.003 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHhCCChHH
Q psy1880 6 QSFTIAMARKILLKTNNPKA 25 (81)
Q Consensus 6 q~~~~~~~~~a~~~~~~~k~ 25 (81)
+..+-+++++||.+|..+++
T Consensus 25 ~~~a~~vV~eALeKygL~~e 44 (100)
T cd01781 25 NDNADRIVGEALEKYGLEKS 44 (100)
T ss_pred CccHHHHHHHHHHHhCCCcc
Confidence 45566788899999988654
No 146
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=20.37 E-value=26 Score=25.37 Aligned_cols=13 Identities=23% Similarity=0.611 Sum_probs=10.7
Q ss_pred CceEEEEeCcccee
Q psy1880 40 PNWHCVVGHCYGAC 53 (81)
Q Consensus 40 ~~WhciVG~~Fgs~ 53 (81)
..|+ |+|.+|.|+
T Consensus 5 ~~Wq-v~g~~fCS~ 17 (303)
T COG5129 5 SLWQ-VSGENFCSF 17 (303)
T ss_pred HHHH-Hccccccce
Confidence 4699 889999876
No 147
>KOG3938|consensus
Probab=20.31 E-value=1.9e+02 Score=21.52 Aligned_cols=22 Identities=9% Similarity=0.061 Sum_probs=18.6
Q ss_pred CChHHHHHHHHHHHHHHHhCCC
Q psy1880 1 MTKPMQSFTIAMARKILLKTNN 22 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~~~~ 22 (81)
||++|.+.+++...+.++.|--
T Consensus 252 ~~~e~~~~~i~kindllesymG 273 (334)
T KOG3938|consen 252 QPDEFEEAAIEKINDLLESYMG 273 (334)
T ss_pred chhHHHHHHHHHHHHHHHHhcC
Confidence 5788999999999999988853
No 148
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=20.28 E-value=1.8e+02 Score=16.26 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHhCC---ChHHHHHHH
Q psy1880 3 KPMQSFTIAMARKILLKTN---NPKAISQHF 30 (81)
Q Consensus 3 ~~mq~~~~~~~~~a~~~~~---~~k~iA~~i 30 (81)
.+.|.++++...+-++++. +-.|||+.+
T Consensus 5 T~rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~~ 35 (65)
T PF01726_consen 5 TERQKEVLEFIREYIEENGYPPTVREIAEAL 35 (65)
T ss_dssp -HHHHHHHHHHHHHHHHHSS---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 3678899998888887743 346777654
No 149
>cd01576 AcnB_Swivel Aconitase B swivel domain. Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The domain structure of Aconitase B is different from other Aconitases in that he swivel domain that is found at N-terminus of B family is normally found at C-terminus for other Aconitases. In most members of the family, there is also a HEAT domain before domain 4, which is believed to play a role in protein-protein interaction.
Probab=20.22 E-value=54 Score=21.33 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=11.3
Q ss_pred EEEEeCccceeEEecc
Q psy1880 43 HCVVGHCYGACVSFQK 58 (81)
Q Consensus 43 hciVG~~Fgs~vth~~ 58 (81)
-.|+|++||+--|.+.
T Consensus 53 ilvaG~nFG~GSSRe~ 68 (131)
T cd01576 53 VAYVGDVVGTGSSRKS 68 (131)
T ss_pred EEEECCceeeccchHH
Confidence 5666889998765543
No 150
>cd00219 ToxGAP GTPase-activating protein (GAP) domain found in bacterial cytotoxins, ExoS, SptP, and YopE. Part of protein secretion system; stimulates Rac1- dependent cytoskeletal changes that promote bacterial internalization.
Probab=20.13 E-value=75 Score=20.52 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhCCChHHH-HHHHHHHhhc
Q psy1880 6 QSFTIAMARKILLKTNNPKAI-SQHFLREFNR 36 (81)
Q Consensus 6 q~~~~~~~~~a~~~~~~~k~i-A~~iK~~lD~ 36 (81)
.+.+...+...+++....+.+ ++.+++++++
T Consensus 2 ~q~al~~al~GL~ka~~L~~ld~e~L~knh~~ 33 (120)
T cd00219 2 LQSALPSALKGLDKASELESLDAEQLRKNHDR 33 (120)
T ss_pred chhHHHHHHHhHHhhhhhcccCHHHHHHhhHH
Confidence 456777888888887765444 7777777764
Done!