Query psy1880
Match_columns 81
No_of_seqs 104 out of 530
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 18:38:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1880.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1880hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rjs_A Dynein light chain moto 100.0 5.9E-43 2E-47 213.5 9.1 77 1-77 13-89 (89)
2 4ds1_A Dynein light chain 1, c 100.0 2.8E-42 9.7E-47 213.4 9.5 77 1-77 21-97 (97)
3 1yo3_A Dynein light chain 1; s 100.0 1.1E-41 3.8E-46 212.4 10.1 77 1-77 26-102 (102)
4 1use_A VAsp, vasodilator-stimu 80.8 2.6 8.8E-05 22.0 3.5 34 3-38 10-43 (45)
5 3e9v_A Protein BTG2; B-cell tr 55.1 14 0.00049 22.7 3.5 19 25-43 30-48 (120)
6 1eci_B Ectatomin; pore-forming 55.1 3.8 0.00013 19.8 0.6 14 23-36 21-34 (34)
7 2jt1_A PEFI protein; solution 52.2 18 0.00063 20.2 3.4 30 1-30 1-34 (77)
8 3gzx_A Biphenyl dioxygenase su 50.8 51 0.0018 24.2 6.5 45 28-77 44-89 (457)
9 1wj7_A Hypothetical protein (R 49.7 10 0.00036 22.9 2.2 35 12-48 56-91 (104)
10 4fz4_A 0197-18KD, uncharacteri 47.9 36 0.0012 21.9 4.6 32 10-41 86-117 (154)
11 2kzv_A Uncharacterized protein 47.7 5.6 0.00019 23.3 0.7 39 1-39 1-49 (92)
12 2bmo_A Oxygenase-alpha NBDO; n 46.3 68 0.0023 23.1 6.5 44 29-77 24-68 (447)
13 1eci_A Ectatomin; pore-forming 46.0 26 0.00089 17.0 5.0 14 23-36 23-36 (37)
14 1u84_A Hypothetical protein; s 44.9 23 0.00078 20.8 3.1 28 13-40 37-64 (90)
15 3gxq_A Putative regulator of t 44.3 33 0.0011 17.8 4.6 33 2-36 19-52 (54)
16 3vca_A Ring-hydroxylating diox 42.7 75 0.0026 22.9 6.2 46 27-77 29-75 (412)
17 2b1x_A Naphthalene dioxygenase 41.8 86 0.0029 22.7 6.5 43 29-76 33-76 (470)
18 3vp5_A Transcriptional regulat 40.0 52 0.0018 19.8 4.4 29 1-29 9-41 (189)
19 1qwg_A PSL synthase;, (2R)-pho 39.8 83 0.0028 21.6 5.8 45 1-48 111-170 (251)
20 1uli_A Biphenyl dioxygenase la 39.8 97 0.0033 22.4 6.5 45 28-77 42-87 (460)
21 3ipw_A Hydrolase TATD family p 39.2 29 0.00099 24.4 3.5 47 2-48 148-204 (325)
22 3nnr_A Transcriptional regulat 39.1 23 0.00078 22.0 2.7 29 1-29 2-34 (228)
23 3i1i_A Homoserine O-acetyltran 38.6 11 0.00036 24.8 1.0 32 24-55 130-161 (377)
24 2b61_A Homoserine O-acetyltran 38.0 15 0.00051 24.3 1.7 33 23-55 136-168 (377)
25 3vba_A Isopropylmalate/citrama 37.3 14 0.00049 24.1 1.5 18 36-53 49-66 (176)
26 3ajm_A Programmed cell death p 37.3 16 0.00056 24.7 1.8 13 24-36 125-137 (213)
27 3n0q_A Putative aromatic-ring 37.0 1.2E+02 0.004 21.9 6.5 46 27-77 27-73 (409)
28 2z15_A Protein TOB1; human TOB 36.6 12 0.00041 23.4 1.0 19 25-43 34-52 (130)
29 3swj_A CHUZ, putative uncharac 36.0 79 0.0027 21.2 5.2 63 2-66 64-130 (251)
30 2oyy_A Hexameric cytochrome; a 35.5 62 0.0021 18.4 3.9 34 2-35 14-47 (76)
31 2gbw_A Biphenyl 2,3-dioxygenas 35.0 1.2E+02 0.0043 21.7 6.4 43 29-76 25-68 (454)
32 2pkp_A Homoaconitase small sub 33.1 18 0.00063 23.3 1.5 17 37-53 48-64 (170)
33 3byp_A CZRB protein; membrane 32.5 36 0.0012 18.8 2.6 22 25-47 61-82 (94)
34 3k6g_A Telomeric repeat-bindin 30.7 12 0.00042 22.8 0.3 16 7-22 11-26 (111)
35 1wyo_A Protein EB3, microtubul 30.5 47 0.0016 21.3 3.1 31 10-40 82-128 (159)
36 3m6z_A Topoisomerase V; helix- 30.3 60 0.0021 22.6 3.8 34 3-36 288-321 (380)
37 2hcu_A 3-isopropylmalate dehyd 29.7 24 0.00083 23.7 1.7 17 37-53 82-98 (213)
38 3qoq_A Alginate and motility r 29.7 70 0.0024 17.7 3.4 34 1-36 26-59 (69)
39 3nrg_A TETR family transcripti 29.3 83 0.0028 18.8 4.1 29 1-29 10-42 (217)
40 2dst_A Hypothetical protein TT 28.5 49 0.0017 18.7 2.8 31 24-55 64-94 (131)
41 3id6_A NOP5, PRE mRNA splicing 26.7 57 0.002 22.6 3.2 37 1-37 225-261 (268)
42 1ns5_A Hypothetical protein YB 26.7 73 0.0025 20.1 3.5 28 24-53 82-109 (155)
43 1o6d_A Hypothetical UPF0247 pr 26.6 82 0.0028 20.1 3.8 28 24-53 81-108 (163)
44 1v7l_A 3-isopropylmalate dehyd 26.1 22 0.00074 22.9 0.9 17 37-53 48-64 (163)
45 3sty_A Methylketone synthase 1 26.1 37 0.0013 20.8 2.0 33 23-55 63-95 (267)
46 2qjz_A Microtubule-associated 26.0 55 0.0019 20.0 2.7 31 10-40 65-111 (123)
47 1to0_A Hypothetical UPF0247 pr 25.7 92 0.0031 19.9 3.9 29 24-53 86-114 (167)
48 3qi7_A Putative transcriptiona 25.5 73 0.0025 23.0 3.7 38 7-44 312-351 (371)
49 2yve_A Transcriptional regulat 24.4 99 0.0034 18.4 3.8 22 1-22 1-22 (185)
50 1sg7_A Putative cation transpo 23.8 1.2E+02 0.0041 17.9 5.4 42 2-43 38-93 (96)
51 3g5g_A Regulatory protein; tra 23.4 1.1E+02 0.0036 17.1 4.2 30 1-30 21-51 (99)
52 2pl5_A Homoserine O-acetyltran 23.4 37 0.0013 22.1 1.7 33 23-55 127-159 (366)
53 3cdl_A Transcriptional regulat 22.7 1.2E+02 0.004 18.2 3.9 20 2-21 7-26 (203)
54 3gx1_A LIN1832 protein; APC633 22.6 1E+02 0.0036 18.5 3.6 18 22-39 111-128 (130)
55 1nla_A Transcriptional repress 22.5 1E+02 0.0035 16.6 4.1 35 1-37 14-48 (64)
56 1ysj_A Protein YXEP; M20 famil 22.4 1.5E+02 0.005 20.6 4.7 35 3-37 28-65 (404)
57 3gas_A Heme oxygenase; FMN-bin 21.9 1.9E+02 0.0065 19.5 5.7 53 2-56 64-119 (259)
58 3gkq_A Terminal oxygenase comp 21.6 2E+02 0.0067 20.9 5.3 40 34-79 24-64 (389)
59 3ph0_C ASCG; type III secretio 21.5 1.1E+02 0.0038 16.6 4.8 35 1-37 1-35 (61)
60 3icx_A PRE mRNA splicing prote 21.4 87 0.003 21.6 3.3 36 1-36 92-127 (255)
61 3cwr_A Transcriptional regulat 21.1 1.3E+02 0.0045 17.6 3.8 27 3-29 16-46 (208)
62 2v6x_A Vacuolar protein sortin 20.4 72 0.0025 17.6 2.3 15 4-18 8-22 (85)
63 2v6y_A AAA family ATPase, P60 20.4 1E+02 0.0036 17.1 3.0 15 5-19 7-21 (83)
64 1l9l_A Granulysin; saposin fol 20.3 1.2E+02 0.004 16.5 3.2 24 6-30 7-30 (74)
65 1ews_A RK-1 defensin, alpha-de 20.2 66 0.0023 14.9 1.7 18 36-53 6-25 (32)
No 1
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=100.00 E-value=5.9e-43 Score=213.49 Aligned_cols=77 Identities=36% Similarity=0.694 Sum_probs=76.2
Q ss_pred CChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccCCCceEEEEeCccceeEEeccCcEEEEEeCCEEEEEEeeC
Q psy1880 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMGPFSILLFKIQ 77 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~illfk~~ 77 (81)
||++||++|+++|.+|+++++.++|||++||++||++|||+||||||++|||+|||++++||||++|+++|||||||
T Consensus 13 M~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~~g~~~iLlfKtg 89 (89)
T 3rjs_A 13 MPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFYIGQVAVLLFKSG 89 (89)
T ss_dssp SCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEEETTEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEEECCEEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996
No 2
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-42 Score=213.43 Aligned_cols=77 Identities=25% Similarity=0.611 Sum_probs=76.1
Q ss_pred CChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccCCCceEEEEeCccceeEEeccCcEEEEEeCCEEEEEEeeC
Q psy1880 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMGPFSILLFKIQ 77 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~illfk~~ 77 (81)
||++||++|+++|.+|++++++++|||++||++||++|||+||||||++|||+|||++++||||++|+++||||||+
T Consensus 21 M~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~~g~~aiLlfKtg 97 (97)
T 4ds1_A 21 ITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPLAFLVFKTA 97 (97)
T ss_dssp ECHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEEETTEEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEEECCEEEEEEecC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999986
No 3
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=100.00 E-value=1.1e-41 Score=212.45 Aligned_cols=77 Identities=42% Similarity=0.768 Sum_probs=76.1
Q ss_pred CChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccCCCceEEEEeCccceeEEeccCcEEEEEeCCEEEEEEeeC
Q psy1880 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMGPFSILLFKIQ 77 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~vth~~~~~i~F~~~~~~illfk~~ 77 (81)
||++||++|+++|.+|++++++++|||++||++||++|||+||||||++|||+|||++++||||++|+++||||||+
T Consensus 26 M~~emq~~a~~~a~~Al~k~~~ekdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~g~~aiLlfKt~ 102 (102)
T 1yo3_A 26 MTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIGQVAILLFKSG 102 (102)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEETTEEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEECCEEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999985
No 4
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=80.76 E-value=2.6 Score=21.99 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccC
Q psy1880 3 KPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQF 38 (81)
Q Consensus 3 ~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD~~y 38 (81)
+.++++|++..+.-+++.+ ++|-+.|+++|.++.
T Consensus 10 e~~KqEIL~E~RkElqK~K--~EIIeAi~~El~~~~ 43 (45)
T 1use_A 10 QRVKQELLEEVKKELQKVK--EEIIEAFVQELRKRG 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcC
Confidence 3577888888888777655 689999999998763
No 5
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=55.14 E-value=14 Score=22.72 Aligned_cols=19 Identities=16% Similarity=0.508 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhccCCCceE
Q psy1880 25 AISQHFLREFNRQFKPNWH 43 (81)
Q Consensus 25 ~iA~~iK~~lD~~yg~~Wh 43 (81)
..|+.|.+.|-++|-+.|+
T Consensus 30 ~F~~~L~~~L~~~y~~HW~ 48 (120)
T 3e9v_A 30 VFSGALQEALTEHYKHHWF 48 (120)
T ss_dssp HHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 5799999999999999998
No 6
>1eci_B Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=55.05 E-value=3.8 Score=19.78 Aligned_cols=14 Identities=7% Similarity=0.244 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHhhc
Q psy1880 23 PKAISQHFLREFNR 36 (81)
Q Consensus 23 ~k~iA~~iK~~lD~ 36 (81)
+-+||.+||++-|+
T Consensus 21 ~g~iat~ik~~c~k 34 (34)
T 1eci_B 21 EGSIATMIKKKCDK 34 (34)
T ss_dssp STTHHHHHHHHSCC
T ss_pred cccHHHHHHHHhCC
Confidence 46899999998764
No 7
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=52.24 E-value=18 Score=20.21 Aligned_cols=30 Identities=10% Similarity=0.123 Sum_probs=21.8
Q ss_pred CChHHHHHHHHHHHHHHHh---CCC-hHHHHHHH
Q psy1880 1 MTKPMQSFTIAMARKILLK---TNN-PKAISQHF 30 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~---~~~-~k~iA~~i 30 (81)
|+++.++.|++...+-++. ++. -.|||+.+
T Consensus 1 ~~~~r~~~IL~~I~~~i~~~~g~~psv~EIa~~l 34 (77)
T 2jt1_A 1 MSESIVTKIISIVQERQNMDDGAPVKTRDIADAA 34 (77)
T ss_dssp CCCTHHHHHHHHHHHHHHHHTTSCEEHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCcCHHHHHHHH
Confidence 8889999999998888776 332 35666543
No 8
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=50.78 E-value=51 Score=24.23 Aligned_cols=45 Identities=16% Similarity=0.356 Sum_probs=33.0
Q ss_pred HHHHHHhhccCCCceEEEEeC-ccceeEEeccCcEEEEEeCCEEEEEEeeC
Q psy1880 28 QHFLREFNRQFKPNWHCVVGH-CYGACVSFQKGSFMYLSMGPFSILLFKIQ 77 (81)
Q Consensus 28 ~~iK~~lD~~yg~~WhciVG~-~Fgs~vth~~~~~i~F~~~~~~illfk~~ 77 (81)
+....++++-|...|++|.-. ... +++.++-+.+++..++|+|..
T Consensus 44 ~~~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i~~~~vvv~R~~ 89 (457)
T 3gzx_A 44 DLYQLELERVFGRSWLMLGHETHIP-----KIGDYLTTYMGEDPVIMVRQK 89 (457)
T ss_dssp HHHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECT
T ss_pred HHHHHHHHHHHhcCCEEEeEHHHcC-----CCCCeEEEEECCEEEEEEECC
Confidence 555678889999999998653 231 234566678899999999963
No 9
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=49.71 E-value=10 Score=22.93 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=24.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHhhccC-CCceEEEEeC
Q psy1880 12 MARKILLKTNNPKAISQHFLREFNRQF-KPNWHCVVGH 48 (81)
Q Consensus 12 ~~~~a~~~~~~~k~iA~~iK~~lD~~y-g~~WhciVG~ 48 (81)
.|+.||...+ -|+++.|..-|+..= .+.|.++.++
T Consensus 56 eAr~AL~~~n--gDl~~AI~~Lleg~~~~~~W~~~~kK 91 (104)
T 1wj7_A 56 ECVIALHDCN--GDVNRAINVLLEGNPDTHSWEMVGKK 91 (104)
T ss_dssp HHHHHHHHHT--SCHHHHHHHHHTCSSSCSSCSSCCCC
T ss_pred HHHHHHHHcC--CCHHHHHHHHHhCCCcCCceeeeccc
Confidence 3666777655 467777888887763 4689998875
No 10
>4fz4_A 0197-18KD, uncharacterized protein conserved in bacteria; surface antigen, immune system; 2.44A {Streptococcus suis}
Probab=47.93 E-value=36 Score=21.90 Aligned_cols=32 Identities=9% Similarity=0.125 Sum_probs=24.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHhhccCCCc
Q psy1880 10 IAMARKILLKTNNPKAISQHFLREFNRQFKPN 41 (81)
Q Consensus 10 ~~~~~~a~~~~~~~k~iA~~iK~~lD~~yg~~ 41 (81)
.+.|..-.++|++..+|-+.+|+.|.++++++
T Consensus 86 tRqVa~YrkKYp~n~eIe~eyk~~l~qt~~~~ 117 (154)
T 4fz4_A 86 IRQVAELRKKYPGDNTIEEEYNAHLKQDEGKS 117 (154)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHTCCCSSSS
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhhccccC
Confidence 34566667889999888888888887776553
No 11
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=47.67 E-value=5.6 Score=23.35 Aligned_cols=39 Identities=10% Similarity=0.148 Sum_probs=26.1
Q ss_pred CChHHHHHHHHHHHHHHHhCCCh------HHHHHHHHHH---hhcc-CC
Q psy1880 1 MTKPMQSFTIAMARKILLKTNNP------KAISQHFLRE---FNRQ-FK 39 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~~~~~------k~iA~~iK~~---lD~~-yg 39 (81)
||...-..++++.++|++...++ .+|-+.|++. ||.+ ||
T Consensus 1 ~~~~~d~~l~~ll~~Ai~~~~dedGWa~Lg~vG~~i~k~~PdFD~RnYG 49 (92)
T 2kzv_A 1 MPHKEKHPLQDMFTSAIEAVARDSGWAELSAVGSYLAKNDPSFDPRNWG 49 (92)
T ss_dssp CCCSCCSSHHHHHHHHHHHHTTTTSSCBHHHHHHHHHHHCTTCCTTTTC
T ss_pred CCCcchHHHHHHHHHHHHHhcCCCCcEeHHHHHHHHHHhCcCCCccccC
Confidence 45445556777888888876664 3788888875 7753 44
No 12
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=46.35 E-value=68 Score=23.06 Aligned_cols=44 Identities=18% Similarity=0.363 Sum_probs=31.7
Q ss_pred HHHHHhhccCCCceEEEEeC-ccceeEEeccCcEEEEEeCCEEEEEEeeC
Q psy1880 29 HFLREFNRQFKPNWHCVVGH-CYGACVSFQKGSFMYLSMGPFSILLFKIQ 77 (81)
Q Consensus 29 ~iK~~lD~~yg~~WhciVG~-~Fgs~vth~~~~~i~F~~~~~~illfk~~ 77 (81)
....+++.-|...|++|.-. ... +++.++-+.+++..++|||..
T Consensus 24 ~~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~~~~~~vvv~R~~ 68 (447)
T 2bmo_A 24 LFQHELKTIFARNWLFLTHDSLIP-----SPGDYVKAKMGVDEVIVSRQN 68 (447)
T ss_dssp HHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECT
T ss_pred HHHHHHHHhhccCCeEEeEHHHCC-----CCCCeEEEEECCeeEEEEECC
Confidence 34567888889999997542 221 245677788899999999963
No 13
>1eci_A Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=45.99 E-value=26 Score=17.01 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHhhc
Q psy1880 23 PKAISQHFLREFNR 36 (81)
Q Consensus 23 ~k~iA~~iK~~lD~ 36 (81)
+-+||.+||++-|+
T Consensus 23 ~g~iat~ik~~c~k 36 (37)
T 1eci_A 23 SGDIATYIKRECGK 36 (37)
T ss_dssp CHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHhcc
Confidence 47899999999876
No 14
>1u84_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, PSI center for structural genomics; 1.60A {Geobacillus stearothermophilus} SCOP: a.230.1.1 PDB: 3r2x_C*
Probab=44.89 E-value=23 Score=20.80 Aligned_cols=28 Identities=7% Similarity=0.254 Sum_probs=22.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHhhccCCC
Q psy1880 13 ARKILLKTNNPKAISQHFLREFNRQFKP 40 (81)
Q Consensus 13 ~~~a~~~~~~~k~iA~~iK~~lD~~yg~ 40 (81)
+.+|+....+...+|+.|..-|...|+.
T Consensus 37 Iv~av~~~d~~~~LA~~Iq~If~~SFee 64 (90)
T 1u84_A 37 VLQAVYETEDARTLAARIQSIYEFAFDE 64 (90)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhc
Confidence 4566677777788999999999888754
No 15
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=44.26 E-value=33 Score=17.78 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=21.5
Q ss_pred ChHHHHHHHHHHHHHHHhCCChH-HHHHHHHHHhhc
Q psy1880 2 TKPMQSFTIAMARKILLKTNNPK-AISQHFLREFNR 36 (81)
Q Consensus 2 ~~~mq~~~~~~~~~a~~~~~~~k-~iA~~iK~~lD~ 36 (81)
.++|+.+|+..|.+ +.+.+-. .=-+-+|+-|++
T Consensus 19 dpdmkdeiikyaqe--kdfdnvsqagreilkkgleq 52 (54)
T 3gxq_A 19 DPDMKDEIIKYAQE--KDFDNVSQAGREILKKGLEQ 52 (54)
T ss_dssp CHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHT
T ss_pred CCchhHHHHHHHHH--ccchhHHHHHHHHHHHHHHh
Confidence 46899999998877 5566533 223456666554
No 16
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=42.72 E-value=75 Score=22.94 Aligned_cols=46 Identities=15% Similarity=0.443 Sum_probs=34.3
Q ss_pred HHHHHHHhhccCCCceEEEEeC-ccceeEEeccCcEEEEEeCCEEEEEEeeC
Q psy1880 27 SQHFLREFNRQFKPNWHCVVGH-CYGACVSFQKGSFMYLSMGPFSILLFKIQ 77 (81)
Q Consensus 27 A~~iK~~lD~~yg~~WhciVG~-~Fgs~vth~~~~~i~F~~~~~~illfk~~ 77 (81)
.+....++++-|...|++|.-. ... +++.++-+.+++..++|||..
T Consensus 29 ~~~~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i~g~~vvv~R~~ 75 (412)
T 3vca_A 29 PEVYALDLQHIFYKQWLYAVPVCQLA-----KAGSYTTLRVGAYEVVIVRSR 75 (412)
T ss_dssp HHHHHHHHHHTTTTSCEEEEEGGGGC-----STTEEEEEEETTEEEEEEECT
T ss_pred HHHHHHHHHHHHhccCEEEEEHHHCC-----CCCCeEEEEECCEEEEEEEcC
Confidence 3555678889999999998653 231 245677788999999999963
No 17
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=41.80 E-value=86 Score=22.74 Aligned_cols=43 Identities=12% Similarity=0.175 Sum_probs=30.6
Q ss_pred HHHHHhhccCCCceEEEEeC-ccceeEEeccCcEEEEEeCCEEEEEEee
Q psy1880 29 HFLREFNRQFKPNWHCVVGH-CYGACVSFQKGSFMYLSMGPFSILLFKI 76 (81)
Q Consensus 29 ~iK~~lD~~yg~~WhciVG~-~Fgs~vth~~~~~i~F~~~~~~illfk~ 76 (81)
....+++.-|...|++|.-. ... +++.++-+.+++..++|||.
T Consensus 33 ~~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~~~g~~vvv~R~ 76 (470)
T 2b1x_A 33 VHDVERERIFGHAWVFLAHESEIP-----ERGDYVVRYISEDQFIVCRD 76 (470)
T ss_dssp HHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHhhcCCeEeeeHHHCC-----CCCCeEEEEECCeEEEEEEc
Confidence 34567777889999997543 331 23556777889999999996
No 18
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=39.95 E-value=52 Score=19.83 Aligned_cols=29 Identities=3% Similarity=-0.053 Sum_probs=21.4
Q ss_pred CChHHHHHHHHHHHHHHHhCCCh----HHHHHH
Q psy1880 1 MTKPMQSFTIAMARKILLKTNNP----KAISQH 29 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~~~~~----k~iA~~ 29 (81)
|+++.++.|++.|.+.+.+.+-+ ++||+.
T Consensus 9 ~~~~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~ 41 (189)
T 3vp5_A 9 LSDEKRNRVYDACLNEFQTHSFHEAKIMHIVKA 41 (189)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCcccccHHHHHHH
Confidence 45678899999999999987643 456543
No 19
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=39.82 E-value=83 Score=21.65 Aligned_cols=45 Identities=9% Similarity=0.059 Sum_probs=33.1
Q ss_pred CChHHHHHHHHHHHHH-HH-------------hCCChHHHHHHHHHHhhccCCCceEEEE-eC
Q psy1880 1 MTKPMQSFTIAMARKI-LL-------------KTNNPKAISQHFLREFNRQFKPNWHCVV-GH 48 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a-~~-------------~~~~~k~iA~~iK~~lD~~yg~~WhciV-G~ 48 (81)
||++.+..+|+.+.+. ++ .-.+..++.+.+++.||. +.|.||| ++
T Consensus 111 l~~~~~~~~I~~~~~~G~~v~~EvG~k~~~~~~~~~~~~~I~~~~~~LeA---GA~~ViiEar 170 (251)
T 1qwg_A 111 ISLEERNNAIKRAKDNGFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDA---GADYVIIEGR 170 (251)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHHH---TCSEEEECCT
T ss_pred CCHHHHHHHHHHHHHCCCEEeeeccccCCcccCCCCHHHHHHHHHHHHHC---CCcEEEEeee
Confidence 6888888888888765 21 111235788999999998 7899998 44
No 20
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=39.79 E-value=97 Score=22.43 Aligned_cols=45 Identities=20% Similarity=0.367 Sum_probs=31.8
Q ss_pred HHHHHHhhccCCCceEEEEeC-ccceeEEeccCcEEEEEeCCEEEEEEeeC
Q psy1880 28 QHFLREFNRQFKPNWHCVVGH-CYGACVSFQKGSFMYLSMGPFSILLFKIQ 77 (81)
Q Consensus 28 ~~iK~~lD~~yg~~WhciVG~-~Fgs~vth~~~~~i~F~~~~~~illfk~~ 77 (81)
+....+++.-|...|++|.-. ... +++.++-+.+++..|+|||..
T Consensus 42 ~~~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~i~~~~vvv~R~~ 87 (460)
T 1uli_A 42 ALYEQELERIFGRSWLLMGHETQIP-----KAGDFMTNYMGEDPVMVVRQK 87 (460)
T ss_dssp HHHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECT
T ss_pred HHHHHHHHHhhhcCceEEEEHHHCC-----CCCCeEEEEECCeEEEEEEcC
Confidence 345677888899999997532 221 235567778899999999963
No 21
>3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1}
Probab=39.20 E-value=29 Score=24.41 Aligned_cols=47 Identities=17% Similarity=-0.053 Sum_probs=32.1
Q ss_pred ChHHHHHHHHHHHHHHHh-CCC---------hHHHHHHHHHHhhccCCCceEEEEeC
Q psy1880 2 TKPMQSFTIAMARKILLK-TNN---------PKAISQHFLREFNRQFKPNWHCVVGH 48 (81)
Q Consensus 2 ~~~mq~~~~~~~~~a~~~-~~~---------~k~iA~~iK~~lD~~yg~~WhciVG~ 48 (81)
+.+.|.++.+...++.++ ++. ..|+.+.||+.-...-++..||.-|.
T Consensus 148 ~~~~Q~~~F~~ql~lA~e~~~lPviiH~r~A~~d~l~iL~~~~~~~~~gViH~FsGs 204 (325)
T 3ipw_A 148 DKETQLSGYRTLSILHQKYPYLPFFFHCRKSWSDLCQLNKELGYNGCKGVVHCFDGT 204 (325)
T ss_dssp CHHHHHHHHHHTHHHHHHCTTCCEEEEEESCHHHHHHHHHHTTCTTSCEEECSCCCC
T ss_pred CHHHHHHHHHHHHHHHHHhhCCeEEEEeCchHHHHHHHHHhcCCCCCcEEEEECCCC
Confidence 346888888877777777 554 46788888876544445667776664
No 22
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=39.06 E-value=23 Score=21.96 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=20.7
Q ss_pred CChHHHHHHHHHHHHHHHhCCCh----HHHHHH
Q psy1880 1 MTKPMQSFTIAMARKILLKTNNP----KAISQH 29 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~~~~~----k~iA~~ 29 (81)
|+++.++.|++.|.+.+.+..-+ ++||+.
T Consensus 2 m~~~tr~~Il~aA~~lf~~~G~~~~t~~~IA~~ 34 (228)
T 3nnr_A 2 MTMKTRDKILLSSLELFNDKGERNITTNHIAAH 34 (228)
T ss_dssp --CCHHHHHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHhChhhcCHHHHHHH
Confidence 78889999999999999886543 455543
No 23
>3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str}
Probab=38.56 E-value=11 Score=24.75 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhccCCCceEEEEeCccceeEE
Q psy1880 24 KAISQHFLREFNRQFKPNWHCVVGHCYGACVS 55 (81)
Q Consensus 24 k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~vt 55 (81)
.++|+.+...+|..=...-+++||.|+|+.+.
T Consensus 130 ~~~~~d~~~~l~~l~~~~~~ilvGhS~Gg~ia 161 (377)
T 3i1i_A 130 LDVARMQCELIKDMGIARLHAVMGPSAGGMIA 161 (377)
T ss_dssp HHHHHHHHHHHHHTTCCCBSEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcEeeEEeeCHhHHHH
Confidence 67888888888765445566799999998764
No 24
>2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40
Probab=37.99 E-value=15 Score=24.29 Aligned_cols=33 Identities=9% Similarity=0.131 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHhhccCCCceEEEEeCccceeEE
Q psy1880 23 PKAISQHFLREFNRQFKPNWHCVVGHCYGACVS 55 (81)
Q Consensus 23 ~k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~vt 55 (81)
..++|+.+...+|..-....+++||.|+|+.+.
T Consensus 136 ~~~~~~~l~~~l~~l~~~~~~~lvGhS~Gg~ia 168 (377)
T 2b61_A 136 VQDIVKVQKALLEHLGISHLKAIIGGSFGGMQA 168 (377)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcceeEEEEEChhHHHH
Confidence 456788888877765445666799999998765
No 25
>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}
Probab=37.27 E-value=14 Score=24.14 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=12.6
Q ss_pred ccCCCceEEEEeCcccee
Q psy1880 36 RQFKPNWHCVVGHCYGAC 53 (81)
Q Consensus 36 ~~yg~~WhciVG~~Fgs~ 53 (81)
+++-+.+-+|+|+|||+=
T Consensus 49 ~~~~~g~IlVaG~NFG~G 66 (176)
T 3vba_A 49 KKVKPGDIIVGGKNFGCG 66 (176)
T ss_dssp HHCCTTCEEEECTTBTBS
T ss_pred HhcCCCCEEEeCCCccCC
Confidence 345566777778899963
No 26
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=37.26 E-value=16 Score=24.75 Aligned_cols=13 Identities=15% Similarity=0.204 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhc
Q psy1880 24 KAISQHFLREFNR 36 (81)
Q Consensus 24 k~iA~~iK~~lD~ 36 (81)
|+||..||+-||.
T Consensus 125 KeIAsaIKklLDA 137 (213)
T 3ajm_A 125 KDIASAIKELLDT 137 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7999999999996
No 27
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=37.01 E-value=1.2e+02 Score=21.91 Aligned_cols=46 Identities=13% Similarity=0.417 Sum_probs=34.1
Q ss_pred HHHHHHHhhccCCCceEEEEeC-ccceeEEeccCcEEEEEeCCEEEEEEeeC
Q psy1880 27 SQHFLREFNRQFKPNWHCVVGH-CYGACVSFQKGSFMYLSMGPFSILLFKIQ 77 (81)
Q Consensus 27 A~~iK~~lD~~yg~~WhciVG~-~Fgs~vth~~~~~i~F~~~~~~illfk~~ 77 (81)
.+....++++-|...|++|.-. ... +++.++-+.+++..++|||..
T Consensus 27 ~~~~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i~g~~vvv~R~~ 73 (409)
T 3n0q_A 27 AEVFQTDLQEIFYKEWLFAIPACELD-----KPGSYVTHQVGNYNVIIVRGA 73 (409)
T ss_dssp HHHHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECT
T ss_pred HHHHHHHHHHHHhcCCEEEEEHHHCC-----CCCCeEEEEECCEEEEEEEcC
Confidence 3555678888999999998753 331 245677788899999999963
No 28
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: d.370.1.1 PDB: 2d5r_B
Probab=36.58 E-value=12 Score=23.37 Aligned_cols=19 Identities=11% Similarity=0.504 Sum_probs=16.7
Q ss_pred HHHHHHHHHhhccCCCceE
Q psy1880 25 AISQHFLREFNRQFKPNWH 43 (81)
Q Consensus 25 ~iA~~iK~~lD~~yg~~Wh 43 (81)
..++.|.+.|-++|-+.|.
T Consensus 34 ~F~~~L~~~L~~~y~~HWy 52 (130)
T 2z15_A 34 IFGEELERLLKKKYEGHWY 52 (130)
T ss_dssp HHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhcCCCC
Confidence 5789999999999999994
No 29
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni}
Probab=36.03 E-value=79 Score=21.16 Aligned_cols=63 Identities=6% Similarity=0.015 Sum_probs=39.1
Q ss_pred ChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccCCCceEEEEe---CccceeEEecc-CcEEEEEe
Q psy1880 2 TKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVG---HCYGACVSFQK-GSFMYLSM 66 (81)
Q Consensus 2 ~~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD~~yg~~WhciVG---~~Fgs~vth~~-~~~i~F~~ 66 (81)
+++.+..++++++.|-.... ..++++.++.-+++. ...+=..++ .-++|.+.+-. +.-+||.+
T Consensus 64 ~~~~r~~lv~m~~~a~~~~d-~~~l~~e~~~ll~~~-~~~~LAT~~~dG~P~~s~v~~~~~~g~~~~~~ 130 (251)
T 3swj_A 64 ENTIKDTIISLCMSAKSEQN-FSGVEKELNEFMLSF-NSVALATLNANGEVVCSYAPFVSTQWGNYIYI 130 (251)
T ss_dssp TTTHHHHHHHHHHHHSSSCC-CSHHHHHHHHHHHTC-SEEEEEEECTTSCEEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhccccCC-hhhHHHHHHHHHhhC-CEEEEEEECCCCCEEEEEEEEEEECCEEEEEE
Confidence 35778889999988766543 456888899888854 334444453 34555554432 33455555
No 30
>2oyy_A Hexameric cytochrome; all helical, unknown function; HET: HEM; 2.50A {Silicibacter pomeroyi}
Probab=35.45 E-value=62 Score=18.36 Aligned_cols=34 Identities=9% Similarity=0.171 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhh
Q psy1880 2 TKPMQSFTIAMARKILLKTNNPKAISQHFLREFN 35 (81)
Q Consensus 2 ~~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD 35 (81)
|++=.+-++.+++.+++...++.++-+.++...+
T Consensus 14 PeeG~~LAvklaR~~vk~tQPd~evr~~lR~~Ya 47 (76)
T 2oyy_A 14 PQEGFDLAVKLSRIAVKKTQPDAQVRDTLRAVYE 47 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhccCCCHHHHHHHhHHhh
Confidence 4566778999999999998888888777776554
No 31
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=35.04 E-value=1.2e+02 Score=21.73 Aligned_cols=43 Identities=19% Similarity=0.286 Sum_probs=30.9
Q ss_pred HHHHHhhccCCCceEEEEeC-ccceeEEeccCcEEEEEeCCEEEEEEee
Q psy1880 29 HFLREFNRQFKPNWHCVVGH-CYGACVSFQKGSFMYLSMGPFSILLFKI 76 (81)
Q Consensus 29 ~iK~~lD~~yg~~WhciVG~-~Fgs~vth~~~~~i~F~~~~~~illfk~ 76 (81)
....+++.-|...|++|.-. ... +++.++-+.+++..|+|||.
T Consensus 25 ~~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~~~~~~vvv~R~ 68 (454)
T 2gbw_A 25 VYALEIERIFSRAWLMLGHESLVP-----KPGDFITTYMAEDKVILSHQ 68 (454)
T ss_dssp HHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHhhcCcEEEeEHHHCC-----CCCCeEEEEECCeEEEEEEc
Confidence 34567788889999997543 221 24556777889999999996
No 32
>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=33.06 E-value=18 Score=23.33 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=12.7
Q ss_pred cCCCceEEEEeCcccee
Q psy1880 37 QFKPNWHCVVGHCYGAC 53 (81)
Q Consensus 37 ~yg~~WhciVG~~Fgs~ 53 (81)
++.+.|-+|.|++||+=
T Consensus 48 ~~~~~~iivaG~nfG~G 64 (170)
T 2pkp_A 48 KVKEGDVIVAGENFGCG 64 (170)
T ss_dssp HCCTTCEEEECTTBTBS
T ss_pred hCCCCCEEEecCCCCCC
Confidence 35567888888999963
No 33
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=32.54 E-value=36 Score=18.78 Aligned_cols=22 Identities=9% Similarity=0.240 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhccCCCceEEEEe
Q psy1880 25 AISQHFLREFNRQFKPNWHCVVG 47 (81)
Q Consensus 25 ~iA~~iK~~lD~~yg~~WhciVG 47 (81)
++++.|++.+-++|+.. |+.|-
T Consensus 61 ~i~~~ie~~l~~~~~~~-~vtIh 82 (94)
T 3byp_A 61 RLCDELERALAQAFPGL-QATIH 82 (94)
T ss_dssp HHHHHHHHHHHHHSTTE-EEEEE
T ss_pred HHHHHHHHHHHHHCCCC-EEEEE
Confidence 68899999999999887 98874
No 34
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=30.67 E-value=12 Score=22.80 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhCCC
Q psy1880 7 SFTIAMARKILLKTNN 22 (81)
Q Consensus 7 ~~~~~~~~~a~~~~~~ 22 (81)
..++++.+.+|.+++.
T Consensus 11 g~~~~~i~~lMeef~~ 26 (111)
T 3k6g_A 11 GAAIKIIRQLMEKFNL 26 (111)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhh
Confidence 4456777777777765
No 35
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.47 E-value=47 Score=21.34 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=23.9
Q ss_pred HHHHHHHHHhCCCh----------------HHHHHHHHHHhhccCCC
Q psy1880 10 IAMARKILLKTNNP----------------KAISQHFLREFNRQFKP 40 (81)
Q Consensus 10 ~~~~~~a~~~~~~~----------------k~iA~~iK~~lD~~yg~ 40 (81)
+.+..+|++++..+ -|.++.+|+.+|+.|++
T Consensus 82 ~k~lQ~af~k~gV~k~ipV~kLvkgk~qdNlEFlqWfk~f~d~n~~~ 128 (159)
T 1wyo_A 82 FKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYDG 128 (159)
T ss_dssp HHHHHHHHHHHTCCCCCCHHHHTTTCSHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHcCCCCccCHHHHhcCCchhHHHHHHHHHHHHHHcCCC
Confidence 35677788876542 27899999999999975
No 36
>3m6z_A Topoisomerase V; helix-hairpin-helix, conformational changes I protein; HET: PO4; 1.40A {Methanopyrus kandleri} PDB: 3m6k_A* 3m7d_A 3m7g_A
Probab=30.30 E-value=60 Score=22.60 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhc
Q psy1880 3 KPMQSFTIAMARKILLKTNNPKAISQHFLREFNR 36 (81)
Q Consensus 3 ~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD~ 36 (81)
....+.|+++|.+.-+.|..-.|+|--+.+.||-
T Consensus 288 ryleqrivecalklqdrygiredvalclarafdg 321 (380)
T 3m6z_A 288 RYLEQRIVECALKLQDRYGIREDVALCLARAFDG 321 (380)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhhhhhccHHHHHHHHHHHhCC
Confidence 3467889999999999999999999999888884
No 37
>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}
Probab=29.74 E-value=24 Score=23.72 Aligned_cols=17 Identities=18% Similarity=0.434 Sum_probs=13.0
Q ss_pred cCCCceEEEEeCcccee
Q psy1880 37 QFKPNWHCVVGHCYGAC 53 (81)
Q Consensus 37 ~yg~~WhciVG~~Fgs~ 53 (81)
+|.+..-+|+|+||||=
T Consensus 82 ~~~~~~IlvaG~NfGcG 98 (213)
T 2hcu_A 82 EYREASILITGDNFGAG 98 (213)
T ss_dssp GGTTCCEEEECSSBTCS
T ss_pred hhcCCcEEEecCCCCCC
Confidence 46667778888999963
No 38
>3qoq_A Alginate and motility regulator Z; protein-DNA complex, ribbon-helix-helix; HET: DNA; 3.10A {Pseudomonas aeruginosa}
Probab=29.69 E-value=70 Score=17.65 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=21.4
Q ss_pred CChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhc
Q psy1880 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNR 36 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD~ 36 (81)
||+++...+-..|.+ +--+...+|...|.+.|++
T Consensus 26 lP~eL~~~L~~~A~~--~grSlNaeIv~~Le~sl~~ 59 (69)
T 3qoq_A 26 LPEGMREQIAEVARS--HHRSMNSEIIARLEQSLLQ 59 (69)
T ss_dssp CCTTHHHHHHHHHHH--TTCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHH
Confidence 577777777665443 2223346788888888765
No 39
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=29.25 E-value=83 Score=18.80 Aligned_cols=29 Identities=10% Similarity=0.140 Sum_probs=21.2
Q ss_pred CChHHHHHHHHHHHHHHHhCCCh----HHHHHH
Q psy1880 1 MTKPMQSFTIAMARKILLKTNNP----KAISQH 29 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~~~~~----k~iA~~ 29 (81)
++++.++.|++.|.+.+.+..-+ .+||+.
T Consensus 10 ~~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~ 42 (217)
T 3nrg_A 10 LPEEKRSRLIDVLLDEFAQNDYDSVSINRITER 42 (217)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhcCcccCCHHHHHHH
Confidence 35668889999999999987643 456654
No 40
>2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39
Probab=28.48 E-value=49 Score=18.68 Aligned_cols=31 Identities=6% Similarity=-0.133 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhccCCCceEEEEeCccceeEE
Q psy1880 24 KAISQHFLREFNRQFKPNWHCVVGHCYGACVS 55 (81)
Q Consensus 24 k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~vt 55 (81)
.+.++.+...+|..-.... .+||.|+|+.++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~-~lvG~S~Gg~~a 94 (131)
T 2dst_A 64 EELAHFVAGFAVMMNLGAP-WVLLRGLGLALG 94 (131)
T ss_dssp HHHHHHHHHHHHHTTCCSC-EEEECGGGGGGH
T ss_pred HHHHHHHHHHHHHcCCCcc-EEEEEChHHHHH
Confidence 4566777766665432333 478999998764
No 41
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
Probab=26.73 E-value=57 Score=22.57 Aligned_cols=37 Identities=14% Similarity=0.036 Sum_probs=27.5
Q ss_pred CChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcc
Q psy1880 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQ 37 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD~~ 37 (81)
|+++..+.|.+.|..+++.+..-+.+.++|+..|..-
T Consensus 225 ise~DL~~I~~~a~~v~~L~e~R~~L~~Yl~srM~~~ 261 (268)
T 3id6_A 225 ISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEV 261 (268)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777788888888877666678899999888763
No 42
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=26.72 E-value=73 Score=20.12 Aligned_cols=28 Identities=11% Similarity=0.027 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhccCCCceEEEEeCcccee
Q psy1880 24 KAISQHFLREFNRQFKPNWHCVVGHCYGAC 53 (81)
Q Consensus 24 k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~ 53 (81)
.+.|+.|.++.+.- +.=.-|||.++|-.
T Consensus 82 ~~fA~~l~~~~~~g--~~i~FvIGG~~Gl~ 109 (155)
T 1ns5_A 82 PQLAAELERWKLDG--RDVSLLIGGPEGLS 109 (155)
T ss_dssp HHHHHHHHHHHHHC--SCEEEEECBTTBCC
T ss_pred HHHHHHHHHHHhcC--CeEEEEEECCCCCC
Confidence 57999999998874 56777889888853
No 43
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=26.65 E-value=82 Score=20.14 Aligned_cols=28 Identities=11% Similarity=0.160 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhccCCCceEEEEeCcccee
Q psy1880 24 KAISQHFLREFNRQFKPNWHCVVGHCYGAC 53 (81)
Q Consensus 24 k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~ 53 (81)
.+.|+.|.++.+.- +.=.-|||.++|-.
T Consensus 81 ~~fA~~l~~~~~~G--~~i~FvIGGa~Gl~ 108 (163)
T 1o6d_A 81 EEFADFLKDLEMKG--KDITILIGGPYGLN 108 (163)
T ss_dssp HHHHHHHHHHHHHT--CCEEEEECCTTCCC
T ss_pred HHHHHHHHHHHhcC--CeEEEEEECCCCCC
Confidence 47999999998875 56778889988854
No 44
>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1
Probab=26.13 E-value=22 Score=22.85 Aligned_cols=17 Identities=24% Similarity=0.435 Sum_probs=11.5
Q ss_pred cCCCceEEEEeCcccee
Q psy1880 37 QFKPNWHCVVGHCYGAC 53 (81)
Q Consensus 37 ~yg~~WhciVG~~Fgs~ 53 (81)
++.+.|-+|.|++||+=
T Consensus 48 ~~~~g~iivag~nfG~G 64 (163)
T 1v7l_A 48 NVRPGDVVVAGKNFGIG 64 (163)
T ss_dssp HCCTTCEEECCSSBTBS
T ss_pred hCCCCCEEEecCcCCCC
Confidence 44566766667899964
No 45
>3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A*
Probab=26.09 E-value=37 Score=20.80 Aligned_cols=33 Identities=12% Similarity=0.046 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHhhccCCCceEEEEeCccceeEE
Q psy1880 23 PKAISQHFLREFNRQFKPNWHCVVGHCYGACVS 55 (81)
Q Consensus 23 ~k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~vt 55 (81)
..+.|+.+...+|..-+..=-++||.|+|+.+.
T Consensus 63 ~~~~~~~~~~~l~~l~~~~~~~lvGhS~Gg~ia 95 (267)
T 3sty_A 63 FSDYLSPLMEFMASLPANEKIILVGHALGGLAI 95 (267)
T ss_dssp HHHHHHHHHHHHHTSCTTSCEEEEEETTHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEEcHHHHHH
Confidence 357888888888886323345788999998654
No 46
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=25.99 E-value=55 Score=20.00 Aligned_cols=31 Identities=10% Similarity=0.148 Sum_probs=23.6
Q ss_pred HHHHHHHHHhCCCh----------------HHHHHHHHHHhhccCCC
Q psy1880 10 IAMARKILLKTNNP----------------KAISQHFLREFNRQFKP 40 (81)
Q Consensus 10 ~~~~~~a~~~~~~~----------------k~iA~~iK~~lD~~yg~ 40 (81)
+....+|++++..+ -|.++.+|+.+|+.|++
T Consensus 65 ~k~lq~af~k~gV~k~i~v~kLvkgk~qdnleflqW~k~f~d~n~~~ 111 (123)
T 2qjz_A 65 FKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG 111 (123)
T ss_dssp HHHHHHHHHHHTCCCCCCHHHHTTCCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHcCCCCccCHHHHHcCCchhHHHHHHHHHHHHHHcCCC
Confidence 35667777776542 27899999999999975
No 47
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=25.71 E-value=92 Score=19.93 Aligned_cols=29 Identities=10% Similarity=0.111 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhccCCCceEEEEeCcccee
Q psy1880 24 KAISQHFLREFNRQFKPNWHCVVGHCYGAC 53 (81)
Q Consensus 24 k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~ 53 (81)
.+.|+.|.++.+.-. +.=.-|||.++|-.
T Consensus 86 ~~fA~~l~~~~~~G~-~~i~FvIGGa~Gl~ 114 (167)
T 1to0_A 86 EELADTIDKLATYGK-SKVTFVIGGSLGLS 114 (167)
T ss_dssp HHHHHHHHHHHTTTC-CEEEEEECCSSCCC
T ss_pred HHHHHHHHHHHhcCC-ceEEEEEECCCCCC
Confidence 479999999987632 35667889988854
No 48
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=25.47 E-value=73 Score=23.00 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhCCChHHH--HHHHHHHhhccCCCceEE
Q psy1880 7 SFTIAMARKILLKTNNPKAI--SQHFLREFNRQFKPNWHC 44 (81)
Q Consensus 7 ~~~~~~~~~a~~~~~~~k~i--A~~iK~~lD~~yg~~Whc 44 (81)
.-+++.|+..++.-.++.++ ++.|++.+++..|+.|..
T Consensus 312 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (371)
T 3qi7_A 312 SLAIYLATEMVKQDLTQEDVCDPDYLEAFTELRFGIGSEF 351 (371)
T ss_dssp HHHHHHHHHHHHHTCCHHHHCSHHHHHHHHHHHHCCCEEE
T ss_pred HHHHHHHHHHHhCCCCcccccCHHHHHHHHHhhCCCcccc
Confidence 45678888888887777666 479999999999988863
No 49
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=24.40 E-value=99 Score=18.37 Aligned_cols=22 Identities=9% Similarity=0.046 Sum_probs=17.9
Q ss_pred CChHHHHHHHHHHHHHHHhCCC
Q psy1880 1 MTKPMQSFTIAMARKILLKTNN 22 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~~~~ 22 (81)
|.++.++.|++.|.+.+.+..-
T Consensus 1 ~r~~~r~~Il~aa~~l~~~~G~ 22 (185)
T 2yve_A 1 MRTSKKEMILRTAIDYIGEYSL 22 (185)
T ss_dssp CCSCHHHHHHHHHHHHHHHSCS
T ss_pred CchhHHHHHHHHHHHHHHHcCh
Confidence 5677889999999999888654
No 50
>1sg7_A Putative cation transport regulator CHAB; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: a.239.1.1
Probab=23.77 E-value=1.2e+02 Score=17.91 Aligned_cols=42 Identities=10% Similarity=0.173 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHHHHHHHhCCC----------hH---HHH-HHHHHHhhccCCCceE
Q psy1880 2 TKPMQSFTIAMARKILLKTNN----------PK---AIS-QHFLREFNRQFKPNWH 43 (81)
Q Consensus 2 ~~~mq~~~~~~~~~a~~~~~~----------~k---~iA-~~iK~~lD~~yg~~Wh 43 (81)
|..-|+--.+....|+++|.+ |. .+| ..+|+...+.-.+.|.
T Consensus 38 P~hAQ~Iy~kAfNsA~eeY~d~~~r~~~~~rEe~AhrvAWaAVK~~Y~K~~~g~W~ 93 (96)
T 1sg7_A 38 PSHAQDIYKEAFNSAWDQYKDKEDRRDDASREETAHKVAWAAVKHEYAKGDDDKWH 93 (96)
T ss_dssp CSHHHHHHHHHHHHHHHHCCSSSSSSCHHHHHHHHHHHHHHHHHHHEEECSSSCEE
T ss_pred CHHHHHHHHHHHHHHHHHhcChhhccccchhHHHHHHHHHHHHHHHheeCCCCcee
Confidence 333444444555677778887 32 233 5688888886557885
No 51
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=23.43 E-value=1.1e+02 Score=17.14 Aligned_cols=30 Identities=17% Similarity=0.104 Sum_probs=19.2
Q ss_pred CChHHHHHHHHHHHHHHHhCCC-hHHHHHHH
Q psy1880 1 MTKPMQSFTIAMARKILLKTNN-PKAISQHF 30 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~~~~-~k~iA~~i 30 (81)
|+++++..+.+..+++.+.... .+++|+.+
T Consensus 21 M~~~~~~~ig~~lr~~R~~~gltq~elA~~~ 51 (99)
T 3g5g_A 21 MESFLLSKVSFVIKKIRLEKGMTQEDLAYKS 51 (99)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 6667777777777776666553 45677654
No 52
>2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40
Probab=23.36 E-value=37 Score=22.13 Aligned_cols=33 Identities=12% Similarity=0.087 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHhhccCCCceEEEEeCccceeEE
Q psy1880 23 PKAISQHFLREFNRQFKPNWHCVVGHCYGACVS 55 (81)
Q Consensus 23 ~k~iA~~iK~~lD~~yg~~WhciVG~~Fgs~vt 55 (81)
..++|+.|...+|..-.....++||.|+|+.++
T Consensus 127 ~~~~~~dl~~~l~~l~~~~~~~lvGhS~Gg~ia 159 (366)
T 2pl5_A 127 IQDMVKAQKLLVESLGIEKLFCVAGGSMGGMQA 159 (366)
T ss_dssp HHHHHHHHHHHHHHTTCSSEEEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCceEEEEEEeCccHHHH
Confidence 356777777777664334444689999998765
No 53
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=22.71 E-value=1.2e+02 Score=18.24 Aligned_cols=20 Identities=10% Similarity=-0.046 Sum_probs=16.0
Q ss_pred ChHHHHHHHHHHHHHHHhCC
Q psy1880 2 TKPMQSFTIAMARKILLKTN 21 (81)
Q Consensus 2 ~~~mq~~~~~~~~~a~~~~~ 21 (81)
+++.++.|++.|.+.+.+..
T Consensus 7 ~~~~r~~Il~aA~~lf~~~G 26 (203)
T 3cdl_A 7 TDQKRESIVQAAIAEFGDRG 26 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHHHcC
Confidence 56778889999999888754
No 54
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=22.62 E-value=1e+02 Score=18.47 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=13.9
Q ss_pred ChHHHHHHHHHHhhccCC
Q psy1880 22 NPKAISQHFLREFNRQFK 39 (81)
Q Consensus 22 ~~k~iA~~iK~~lD~~yg 39 (81)
+-.++++.+++.+..+|.
T Consensus 111 ~l~el~~~~~~~~~~~~~ 128 (130)
T 3gx1_A 111 GLEDIYQSCEQLFENKYK 128 (130)
T ss_dssp CHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHhhc
Confidence 667899999999988774
No 55
>1nla_A Transcriptional repressor ARC; 3(10) helix, beta-ribbon, beta-sheet, structural switching; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=22.46 E-value=1e+02 Score=16.64 Aligned_cols=35 Identities=11% Similarity=0.205 Sum_probs=23.0
Q ss_pred CChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcc
Q psy1880 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQ 37 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD~~ 37 (81)
||+++...+...|.. +--+....|...|.+.++..
T Consensus 14 lp~eLh~~l~~~A~~--~GrSlN~~Iv~~L~~~l~~~ 48 (64)
T 1nla_A 14 WPREVLDLVRKVAEE--NGRSVNSEIYQRVMESFKKE 48 (64)
T ss_dssp SCHHHHHHHHHHHHH--HTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcc
Confidence 577888877665544 22233567888888888753
No 56
>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural GE PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1
Probab=22.44 E-value=1.5e+02 Score=20.61 Aligned_cols=35 Identities=14% Similarity=0.205 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHhCC---ChHHHHHHHHHHhhcc
Q psy1880 3 KPMQSFTIAMARKILLKTN---NPKAISQHFLREFNRQ 37 (81)
Q Consensus 3 ~~mq~~~~~~~~~a~~~~~---~~k~iA~~iK~~lD~~ 37 (81)
++.++++++..++.++--. .|.+++++|+++|++.
T Consensus 28 ~~~~~~~i~~~~~l~~ips~s~~e~~~~~~l~~~l~~~ 65 (404)
T 1ysj_A 28 KAFHTRLINMRRDLHEHPELSFQEVETTKKIRRWLEEE 65 (404)
T ss_dssp HHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHc
Confidence 4566778887777776532 3678999999999874
No 57
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori}
Probab=21.88 E-value=1.9e+02 Score=19.49 Aligned_cols=53 Identities=11% Similarity=0.128 Sum_probs=36.5
Q ss_pred ChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhccCCCceEEEEe---CccceeEEe
Q psy1880 2 TKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVG---HCYGACVSF 56 (81)
Q Consensus 2 ~~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD~~yg~~WhciVG---~~Fgs~vth 56 (81)
+++.+..++++++.|-..-+. .++.+.|++-+++ ....|=-.++ .-++|.+.+
T Consensus 64 ~~~~r~~lV~m~~~A~~~l~l-~~l~~ei~~ll~~-~~~~~LAT~~~~G~P~~S~v~f 119 (259)
T 3gas_A 64 PKDYKNATIELCQSVEKTHDL-KGVEEEVKAFKEG-FDSVCLATLHPNGHVVCSYAPL 119 (259)
T ss_dssp GGGHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHT-CSEEEEEEECTTSCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCh-hhHHHHHHHHHHh-CCEEEEEeeCcCCCEEEEEEEE
Confidence 357889999999998876554 4688888888885 3455555553 346665544
No 58
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Probab=21.56 E-value=2e+02 Score=20.91 Aligned_cols=40 Identities=15% Similarity=0.118 Sum_probs=28.4
Q ss_pred hhccCCCceEEEEeC-ccceeEEeccCcEEEEEeCCEEEEEEeeCCC
Q psy1880 34 FNRQFKPNWHCVVGH-CYGACVSFQKGSFMYLSMGPFSILLFKIQDE 79 (81)
Q Consensus 34 lD~~yg~~WhciVG~-~Fgs~vth~~~~~i~F~~~~~~illfk~~~~ 79 (81)
.+.-|...|++|.-. ... ++.++-+.+++..++|||..++
T Consensus 24 ~e~if~~~W~~V~~~~ELp------~G~~~~v~i~G~~VvV~R~dG~ 64 (389)
T 3gkq_A 24 AKLGFRNHWYPVRLSAEVA------EASPVPVQLLGEKVLLNRVDGV 64 (389)
T ss_dssp CTTCBSSEEEEEEEGGGSC------BTCCEEEEETTEEEEEEEETTE
T ss_pred hhhhhcCccEEEEEHHHCC------CCCeEEEEECCEEEEEEEeCCe
Confidence 345689999998754 332 2566678888999999996543
No 59
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=21.51 E-value=1.1e+02 Score=16.60 Aligned_cols=35 Identities=6% Similarity=-0.073 Sum_probs=25.0
Q ss_pred CChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhcc
Q psy1880 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQ 37 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD~~ 37 (81)
|+.+|+....++|..+-..+- -+=|..|-.+|+..
T Consensus 1 M~~~l~~lLAe~AL~~TG~Hc--H~EA~tIA~~L~~~ 35 (61)
T 3ph0_C 1 MNVQLKKQLAELALAGTGHHC--HQEAASIADWLAQE 35 (61)
T ss_dssp CCHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHTS
T ss_pred CcHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHhC
Confidence 788999999999888877655 23455566666554
No 60
>3icx_A PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA binding PR; 3.10A {Sulfolobus solfataricus}
Probab=21.36 E-value=87 Score=21.55 Aligned_cols=36 Identities=14% Similarity=0.050 Sum_probs=24.9
Q ss_pred CChHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhhc
Q psy1880 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNR 36 (81)
Q Consensus 1 M~~~mq~~~~~~~~~a~~~~~~~k~iA~~iK~~lD~ 36 (81)
++++..+.+.+.|..+++....-+++.++|+..|..
T Consensus 92 ls~~dl~~i~~~~~~v~~L~~~r~~l~~yl~srM~~ 127 (255)
T 3icx_A 92 ISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKE 127 (255)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355666777777777777665556788888877653
No 61
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=21.06 E-value=1.3e+02 Score=17.58 Aligned_cols=27 Identities=7% Similarity=0.222 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCh----HHHHHH
Q psy1880 3 KPMQSFTIAMARKILLKTNNP----KAISQH 29 (81)
Q Consensus 3 ~~mq~~~~~~~~~a~~~~~~~----k~iA~~ 29 (81)
++.++.|++.|.+.+.+..-+ ++||+.
T Consensus 16 ~~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~ 46 (208)
T 3cwr_A 16 AVVRESIVGAAQRLLSSGGAAAMTMEGVASE 46 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHhccHHHHHHH
Confidence 678899999999999876542 456644
No 62
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=20.39 E-value=72 Score=17.62 Aligned_cols=15 Identities=13% Similarity=0.135 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy1880 4 PMQSFTIAMARKILL 18 (81)
Q Consensus 4 ~mq~~~~~~~~~a~~ 18 (81)
++.+.+++.+..|++
T Consensus 8 ~~l~~A~~l~~~Av~ 22 (85)
T 2v6x_A 8 DFLTKGIELVQKAID 22 (85)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555554443
No 63
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=20.39 E-value=1e+02 Score=17.08 Aligned_cols=15 Identities=7% Similarity=0.016 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHh
Q psy1880 5 MQSFTIAMARKILLK 19 (81)
Q Consensus 5 mq~~~~~~~~~a~~~ 19 (81)
+.+.+++.++.|++.
T Consensus 7 ~~~~Ai~lv~~Ave~ 21 (83)
T 2v6y_A 7 LEDMARKYAILAVKA 21 (83)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 567777777777664
No 64
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=20.34 E-value=1.2e+02 Score=16.55 Aligned_cols=24 Identities=8% Similarity=0.140 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHH
Q psy1880 6 QSFTIAMARKILLKTNNPKAISQHF 30 (81)
Q Consensus 6 q~~~~~~~~~a~~~~~~~k~iA~~i 30 (81)
-+.+++.+.+.+ +.+++.+|-+.+
T Consensus 7 C~~~v~~le~~l-~n~Te~~I~~~L 30 (74)
T 1l9l_A 7 CLTIVQKLKKMV-DKPTQRSVSNAA 30 (74)
T ss_dssp HHHHHHHHHHHC-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHh-cccCHHHHHHHH
Confidence 344555555555 455555555544
No 65
>1ews_A RK-1 defensin, alpha-defisin; alpha defensin, triple-stranded beta-sheet, antimicrobial protein; NMR {Oryctolagus cuniculus} SCOP: g.9.1.1
Probab=20.16 E-value=66 Score=14.95 Aligned_cols=18 Identities=11% Similarity=0.527 Sum_probs=14.0
Q ss_pred ccCCCceEEEEeC--cccee
Q psy1880 36 RQFKPNWHCVVGH--CYGAC 53 (81)
Q Consensus 36 ~~yg~~WhciVG~--~Fgs~ 53 (81)
++|--.|.||=|. -|.|.
T Consensus 6 kkycdpwevidgscglfnsk 25 (32)
T 1ews_A 6 KKYCDPWEVIDGSCGLFNSK 25 (32)
T ss_dssp ESSCCTTEEEEECCSSSSCS
T ss_pred ccccChhheeccccccccce
Confidence 6788999999996 36554
Done!