RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1880
(81 letters)
>gnl|CDD|189895 pfam01221, Dynein_light, Dynein light chain type 1.
Length = 86
Score = 81.8 bits (203), Expect = 2e-22
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M + MQ I A + L K N K I+ H +EF++++ P WHC+VG +G+ V+ +
Sbjct: 10 MPEEMQEDAIECAAEALEKFNVEKDIAAHIKKEFDKKYGPTWHCIVGKNFGSYVTHETKH 69
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G + LLFK
Sbjct: 70 FIYFYIGQLAFLLFK 84
>gnl|CDD|185421 PTZ00059, PTZ00059, dynein light chain; Provisional.
Length = 90
Score = 65.6 bits (160), Expect = 5e-16
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M++ MQ I A + L K N K I+ + +EF++++ P WHC+VG +G+ V+ +
Sbjct: 14 MSEDMQQDAIDCANQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKH 73
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G +ILLFK
Sbjct: 74 FIYFYLGQVAILLFK 88
>gnl|CDD|166697 PLN03058, PLN03058, dynein light chain type 1 family protein;
Provisional.
Length = 128
Score = 53.1 bits (127), Expect = 1e-10
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 1 MTKPMQSFTIAMARKILLKTN---NPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQ 57
M +Q+ + AR IL + K ++ +EF+ + P WHC+VG +G+ V+
Sbjct: 43 MPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGSYVTHS 102
Query: 58 KGSFMYLSMGPFSILLFKIQDEAL 81
G F+Y S+ ILLFK E L
Sbjct: 103 TGGFLYFSIDKVYILLFKTAVEPL 126
>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal
Pek1-like dual-specificity MAP kinase kinases. Protein
kinases (PKs), MAP kinase kinase(MAPKK) subfamily,
fungal Pek1-like proteins, catalytic (c) domain. PKs
catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MAPKK subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The mitogen-activated
protein (MAP) kinase signaling pathways are important
mediators of cellular responses to extracellular
signals. The pathways involve a triple kinase core
cascade comprising of the MAP kinase (MAPK), which is
phosphorylated and activated by a MAPK kinase (MAPKK or
MKK), which itself is phosphorylated and activated by a
MAPK kinase kinase (MAPKKK or MKKK). Members of this
group include the MAPKKs Pek1/Skh1 from
Schizosaccharomyces pombe and MKK2 from Saccharomyces
cerevisiae, and related proteins. Both fission yeast
Pek1 and baker's yeast MKK2 are components of the cell
integrity MAPK pathway. In fission yeast, Pek1
phosphorylates and activates the MAPK Pmk1/Spm1 and is
regulated by the MAPKKK Mkh1. In baker's yeast, the
pathway involves the MAPK Slt2, the MAPKKs MKK1 and
MKK2, and the MAPKKK Bck1. The cell integrity MAPK
cascade is activated by multiple stress conditions, and
is essential in cell wall construction, morphogenesis,
cytokinesis, and ion homeostasis.
Length = 287
Score = 29.3 bits (66), Expect = 0.15
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 12 MARKILLKTNNPKAISQHFLRE--FNRQFK-PNWHCVVGHCYGACVSFQKGS 60
A K + NP + + LRE N+ K P +V + YGA + S
Sbjct: 29 FALKTITTDPNP-DLQKQILRELEINKSCKSPY---IVKY-YGAFLDESSSS 75
>gnl|CDD|197349 cd10041, Reelin_repeat_5_subrepeat_1, N-terminal subrepeat of
tandem repeat unit 5 of reelin and related proteins.
Reelin is an extracellular glycoprotein involved in
neuronal development, specifically in the brain cortex.
It contains 8 tandemly repeated units, each of which is
composed of two highly similar subrepeats and a central
EGF domain. This model characterizes the N-terminal
subrepeat, which directly contacts the C-terminal
subrepeat and the EGF domain in a compact arrangement.
Consecutive reelin repeat units are packed together to
form an overall rod-like molecular structure. Reelin
repeats 5 and 6 are reported to interact with neuronal
receptors, the apolipoprotein E receptor 2 (ApoER2) and
the very-low-density lipoprotein receptor (VLDLR),
triggering a signaling cascade upon binding and
subsequent tyrosine phosphorylation of the cytoplasmic
disabled-1 (Dab1).
Length = 174
Score = 28.6 bits (64), Expect = 0.27
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 27 SQHFLR-EFNRQFKPNWHCVVGHCYGA 52
S +R EF+R F WH ++ CYG+
Sbjct: 80 SADPVRLEFSRDFGATWHLLLPLCYGS 106
>gnl|CDD|233836 TIGR02363, dhaK1, dihydroxyacetone kinase, DhaK subunit. Two types
of dihydroxyacetone kinase (glycerone kinase) are
described. In yeast and a few bacteria, e.g. Citrobacter
freundii, the enzyme is a single chain that uses ATP as
phosphoryl donor and is designated EC 2.7.1.29. By
contract, E. coli and many other bacterial species have
a multisubunit form (EC 2.7.1.-) with a phosphoprotein
donor related to PTS transport proteins. This family
represents the DhaK subunit of the latter type of
dihydroxyacetone kinase, but it specifically excludes
the DhaK paralog DhaK2 (TIGR02362) found in the same
operon as DhaK and DhaK in the Firmicutes.
Length = 329
Score = 25.8 bits (57), Expect = 2.8
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 59 GSFMY-LSMGPFSILLFKIQDEAL 81
G++M L M FS+ L K+ DE L
Sbjct: 294 GNYMTSLDMAGFSLTLLKLDDELL 317
>gnl|CDD|236979 PRK11779, sbcB, exonuclease I; Provisional.
Length = 476
Score = 25.6 bits (57), Expect = 3.4
Identities = 9/16 (56%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
Query: 9 TIAMARKILLKTNNPK 24
TIAMA+ I K PK
Sbjct: 187 TIAMAKLI--KQKQPK 200
>gnl|CDD|218532 pfam05276, SH3BP5, SH3 domain-binding protein 5 (SH3BP5). This
family consists of several eukaryotic SH3 domain-binding
protein 5 or c-Jun N-terminal kinase (JNK)-interacting
proteins (SH3BP5 or Sab). Sab binds to and serves as a
substrate for JNK in vitro, and has been found to
interact with the Src homology 3 (SH3) domain of
Bruton's tyrosine kinase (Btk). Inspection of the
sequence of Sab reveals the presence of two putative
mitogen-activated protein kinase interaction motifs
(KIMs) similar to that found in the JNK docking domain
of the c-Jun transcription factor, and four potential
serine-proline JNK phosphorylation sites in the
C-terminal half of the molecule.
Length = 240
Score = 25.1 bits (55), Expect = 3.9
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 27 SQHFLREFNRQFKPNWHCVVGH 48
Q + + Q W ++ H
Sbjct: 104 EQSLEEQSDAQLDAAWQEMLNH 125
>gnl|CDD|183678 PRK12681, cysB, transcriptional regulator CysB; Reviewed.
Length = 324
Score = 24.9 bits (55), Expect = 5.0
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 10 IAMARKILLKTNNPKAISQHFLRE 33
I +AR+IL K + K+++
Sbjct: 67 IRIAREILSKVESIKSVAGEHTWP 90
>gnl|CDD|225451 COG2898, COG2898, Uncharacterized conserved protein [Function
unknown].
Length = 538
Score = 24.2 bits (53), Expect = 9.5
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 31 LREFNRQFKPNWH 43
LR F +F P W
Sbjct: 493 LRRFKDKFHPEWE 505
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.138 0.443
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,968,324
Number of extensions: 294867
Number of successful extensions: 354
Number of sequences better than 10.0: 1
Number of HSP's gapped: 354
Number of HSP's successfully gapped: 14
Length of query: 81
Length of database: 10,937,602
Length adjustment: 50
Effective length of query: 31
Effective length of database: 8,719,902
Effective search space: 270316962
Effective search space used: 270316962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.1 bits)