RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1880
(81 letters)
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub
malaria, SGC, transport protein; 1.65A {Plasmodium
falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A
2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A
1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Length = 102
Score = 77.2 bits (190), Expect = 1e-20
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
MT+ MQ I A + L K N K I+ H +EF+R++ P WHCVVG +G+ V+ + +
Sbjct: 26 MTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKN 85
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G +ILLFK
Sbjct: 86 FIYFYIGQVAILLFK 100
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold,
peptide binding, nucle structural protein-transport
protein complex; 1.85A {Saccharomyces cerevisiae}
Length = 97
Score = 75.9 bits (187), Expect = 3e-20
Identities = 19/75 (25%), Positives = 42/75 (56%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
+T ++ + +++ L K + I+ ++ + ++ WH +VG +G+ V+ +KG
Sbjct: 21 ITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGH 80
Query: 61 FMYLSMGPFSILLFK 75
F+Y +GP + L+FK
Sbjct: 81 FVYFYIGPLAFLVFK 95
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 177
Score = 27.7 bits (61), Expect = 0.35
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 11/79 (13%)
Query: 5 MQSFTIAMARKILLKTNNP---KAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSF 61
++ + A K N+ + + Q L + N + Y SF K SF
Sbjct: 16 LEYGNLDAALDEAKKLNDSITWERLIQEALAQGN-------ASLAEMIYQTQHSFDKLSF 68
Query: 62 MYLSMGPFSILLFKIQDEA 80
+YL G + L K+Q+ A
Sbjct: 69 LYLVTGDVN-KLSKMQNIA 86
>2car_A Inosine triphosphate pyrophosphatase; hydrolase, inosine
triphosphate pyrophosphohydrolase, inosine
triphosphatase deficiency, ITP, IMP; 1.09A {Homo
sapiens} SCOP: c.51.4.1 PDB: 2j4e_A* 2i5d_A
Length = 196
Score = 26.7 bits (60), Expect = 0.60
Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 11/49 (22%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHC 49
M + + +KI+ T N L E + + C +
Sbjct: 3 MAASL------VGKKIVFVTGNA-----KKLEEVVQILGDKFPCTLVAQ 40
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus}
PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A
Length = 376
Score = 26.6 bits (58), Expect = 0.76
Identities = 10/64 (15%), Positives = 22/64 (34%)
Query: 9 TIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMGP 68
+ + + + + + ++ PN +VG A + G L+M P
Sbjct: 233 VVRQLAEEIDRLYQLRKKLEDYIDRAMDDVAPNLKALVGAKLAARLISLAGGLRELAMMP 292
Query: 69 FSIL 72
S +
Sbjct: 293 SSTI 296
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 0.91
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 12/33 (36%)
Query: 8 FTIAMARKILLKTNNPKAISQHF-------LRE 33
F+I I+ NNP ++ HF +RE
Sbjct: 1659 FSIL---DIV--INNPVNLTIHFGGEKGKRIRE 1686
Score = 23.9 bits (51), Expect = 8.0
Identities = 4/26 (15%), Positives = 8/26 (30%), Gaps = 2/26 (7%)
Query: 25 AISQHFLREFNRQF--KPNWHCVVGH 48
+ L EF + + H +
Sbjct: 82 QVLNLCLTEFENCYLEGNDIHALAAK 107
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus
gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A
1gv8_A 1gvc_A*
Length = 332
Score = 26.0 bits (56), Expect = 1.3
Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 31 LREFNRQFKPNWHCVVGHCYGACV-SFQKGSFMYLSMGPFSILL 73
LR+ +Q + + CV Y C+ + +++ +
Sbjct: 23 LRDLTQQERISLTCVQKATYLDCIKAIANNEADAITLDGGQVFE 66
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate
structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP:
c.94.1.2 c.94.1.2 PDB: 1lfc_A
Length = 689
Score = 25.7 bits (55), Expect = 1.8
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 28 QHFLREFNRQFKPNWHCVVGHCYGACV 54
+ + + P+ CV C+
Sbjct: 20 RRWQWRMKKLGAPSITCVRRAFALECI 46
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 25.8 bits (57), Expect = 1.9
Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 10/61 (16%)
Query: 10 IAMARKILLKTNNP---KAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSM 66
+ +AR +L + +A+ L+ FN + + + ++ S
Sbjct: 668 LTLARDLLTDESAEMKWRALGDASLQRFN-------FKLAIEAFTNAHDLESLFLLHSSF 720
Query: 67 G 67
Sbjct: 721 N 721
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Length = 354
Score = 25.5 bits (56), Expect = 2.1
Identities = 4/19 (21%), Positives = 5/19 (26%)
Query: 28 QHFLREFNRQFKPNWHCVV 46
FLR P +
Sbjct: 297 WDFLRGALALLPPGGRVAL 315
>1h45_A Lactoferrin; metal transport, iron transport, metal binding;
1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A*
1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A
1lgb_C* 1z6v_A 1z6w_A
Length = 334
Score = 25.2 bits (54), Expect = 2.6
Identities = 5/27 (18%), Positives = 8/27 (29%)
Query: 28 QHFLREFNRQFKPNWHCVVGHCYGACV 54
+ R R P C+ C+
Sbjct: 21 FQWQRNMRRVRGPPVSCIKRDSPIQCI 47
>2d3i_A Ovotransferrin; aluminum, metal-binding, transport, metal
transport; 2.15A {Gallus gallus} SCOP: c.94.1.2
c.94.1.2 PDB: 1ovt_A 1aiv_A* 1n04_A 1ryx_A 1dot_A*
1aov_A* 1iq7_A*
Length = 686
Score = 25.3 bits (54), Expect = 2.7
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 31 LREFNRQFKPNWHCVVGHCYGACV-SFQKGSFMYLSMGPFSILL 73
LR+ +Q + + CV Y C+ + +S+ +
Sbjct: 23 LRDLTQQERISLTCVQKATYLDCIKAIANNEADAISLDGGQVFE 66
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 25.1 bits (54), Expect = 2.8
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 6/38 (15%)
Query: 9 TIAM---ARKILLKTNNPKAISQHFLREFNRQFKPNWH 43
IA+ +IL NN + + E N++
Sbjct: 173 NIAIELPPNEILFSENNDMDNNNDGVDELNKKC---TF 207
>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices,
hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11
g.14.1.2 g.14.1.2 g.14.1.2
Length = 425
Score = 24.4 bits (52), Expect = 5.5
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 47 GHCYGACVSFQKGSFMY 63
GH G S + MY
Sbjct: 385 GHALGLDHSSVPEALMY 401
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat,
ATP-binding, cell junction, cell membrane,
integrin-binding protein, membrane, nucleotide-
binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A*
Length = 271
Score = 23.7 bits (52), Expect = 7.8
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 11/62 (17%)
Query: 13 ARKILLKTNNPKAISQHFLREFN--RQFK-PNWHCVVGHCYGACVSFQKGSFM----YLS 65
K+L + S+ F E R F PN V+ GAC S ++
Sbjct: 37 VVKVLKVRDWSTRKSRDFNEECPRLRIFSHPN---VL-PVLGACQSPPAPHPTLITHWMP 92
Query: 66 MG 67
G
Sbjct: 93 YG 94
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin,
conformational change; 2.00A {Homo sapiens} SCOP:
c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A
1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A
1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A
1i6q_A 1jw1_A ...
Length = 691
Score = 24.2 bits (51), Expect = 7.9
Identities = 4/42 (9%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 28 QHFLREFNRQFKPNWHCVVGHCYGACV-SFQKGSFMYLSMGP 68
+ R + P C+ C+ + + +++
Sbjct: 20 FQWQRNMRKVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDG 61
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.138 0.443
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,201,727
Number of extensions: 55906
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 18
Length of query: 81
Length of database: 6,701,793
Length adjustment: 50
Effective length of query: 31
Effective length of database: 5,305,743
Effective search space: 164478033
Effective search space used: 164478033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.5 bits)