RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1880
(81 letters)
>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 87
Score = 75.5 bits (186), Expect = 1e-20
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS 60
M++ MQ + A + L K N K I+ + +EF++++ P WHC+VG +G+ V+ +
Sbjct: 11 MSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRH 70
Query: 61 FMYLSMGPFSILLFK 75
F+Y +G +ILLFK
Sbjct: 71 FIYFYLGQVAILLFK 85
>d1eh3a_ c.94.1.2 (A:) Lactoferrin {Human (Homo sapiens) [TaxId:
9606]}
Length = 324
Score = 28.5 bits (63), Expect = 0.069
Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 1/55 (1%)
Query: 28 QHFLREFNRQFKPNWHCVVGHCYGACV-SFQKGSFMYLSMGPFSILLFKIQDEAL 81
+ R R P C+ C+ + + +++ I + L
Sbjct: 17 FQWQRNMRRVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKL 71
>d1j1qa_ d.165.1.1 (A:) Antiviral protein S {Pokeweed (Phytolacca
americana) [TaxId: 3527]}
Length = 261
Score = 24.9 bits (54), Expect = 1.3
Identities = 8/19 (42%), Positives = 8/19 (42%)
Query: 24 KAISQHFLREFNRQFKPNW 42
K I FNR F PN
Sbjct: 180 KYIENQVKTNFNRDFSPND 198
>d1ce2a1 c.94.1.2 (A:1-333) Lactoferrin {Domestic water buffalo
(Bubalus arnee bubalis) [TaxId: 89462]}
Length = 333
Score = 24.6 bits (53), Expect = 1.7
Identities = 4/27 (14%), Positives = 8/27 (29%)
Query: 28 QHFLREFNRQFKPNWHCVVGHCYGACV 54
+ + P+ CV C+
Sbjct: 20 HRWQWRMKKLGAPSITCVRRASVLECI 46
>d1rl0a_ d.165.1.1 (A:) Dianthin 30 {Clove pink (Dianthus
caryophyllus) [TaxId: 3570]}
Length = 255
Score = 24.1 bits (52), Expect = 2.1
Identities = 3/19 (15%), Positives = 6/19 (31%)
Query: 24 KAISQHFLREFNRQFKPNW 42
+ I + F +F
Sbjct: 182 RYIQNLVTKNFPNKFDSEN 200
>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 269
Score = 24.2 bits (52), Expect = 2.3
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 12 MARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSM 66
+ K L + +A Q + E N + H + Y + + + +Y+ M
Sbjct: 32 LVWKELDYGSMTEAEKQMLVSEVNLLRELK-HPNIVRYYDRIID-RTNTTLYIVM 84
>d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId:
39650]}
Length = 410
Score = 24.4 bits (51), Expect = 2.4
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 22 NPKAISQHFLREFNRQFKP 40
+ + ++EFN +F+P
Sbjct: 392 DTDTSTIAIMKEFNARFQP 410
>d1oi2a_ c.119.1.2 (A:) Dihydroxyacetone kinase subunit K, DhaK
{Escherichia coli [TaxId: 562]}
Length = 347
Score = 24.1 bits (52), Expect = 2.7
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 59 GSFMY-LSMGPFSILLFKIQDEAL 81
G++ L M FSI L K+ DE L
Sbjct: 308 GAYCTSLDMTGFSITLLKVDDETL 331
>d2cara1 c.51.4.1 (A:1-194) Inosine triphosphate pyrophosphatase,
ITPase {Human (Homo sapiens) [TaxId: 9606]}
Length = 194
Score = 23.3 bits (49), Expect = 3.9
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 11/46 (23%)
Query: 1 MTKPMQSFTIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVV 46
M + + +KI+ T N L E + + C +
Sbjct: 1 MAASL------VGKKIVFVTGNA-----KKLEEVVQILGDKFPCTL 35
>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium
falciparum) [TaxId: 5833]}
Length = 286
Score = 23.3 bits (49), Expect = 4.6
Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 12 MARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSMGPFSI 71
A K + + I +RE + + +V Y + ++ ++ +
Sbjct: 29 FALKKIRLEKEDEGIPSTTIREISILKELKHSNIV-KLYDVIHTKKRLVLVFEHLDQDLK 87
Query: 72 LLFKIQDEAL 81
L + + L
Sbjct: 88 KLLDVCEGGL 97
>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9
{Human (Homo sapiens) [TaxId: 9606]}
Length = 318
Score = 23.3 bits (49), Expect = 4.7
Identities = 10/52 (19%), Positives = 15/52 (28%), Gaps = 1/52 (1%)
Query: 12 MARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMY 63
+A K +L N + LRE VV + C +
Sbjct: 38 VALKKVLMENEKEGFPITALREIKILQLLKHENVV-NLIEICRTKASPYNRC 88
>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 270
Score = 23.0 bits (49), Expect = 5.8
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 9 TIAMARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGS-FMYLSM 66
T+ +A L K+ Q F E +V Y + S KG + L
Sbjct: 34 TVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIV-RFYDSWESTVKGKKCIVLVT 91
>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 292
Score = 23.0 bits (48), Expect = 6.1
Identities = 8/55 (14%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 12 MARKILLKTNNPKAISQHFLREFNRQFKPNWHCVVGHCYGACVSFQKGSFMYLSM 66
+A K + ++ + + LRE + +V + S +K + ++
Sbjct: 30 VALKRVRLDDDDEGVPSSALREICLLKELKHKNIV-RLHDVLHSDKKLTLVFEFC 83
>d1y93a1 d.92.1.11 (A:106-263) Macrophage elastase (MMP-12) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 158
Score = 23.0 bits (48), Expect = 6.5
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 46 VGHCYGACVSFQKGSFMYLSMGPFSILLFKIQD 78
+GH G S + M+ + I F++
Sbjct: 115 IGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSA 147
>d2b6da1 c.94.1.2 (A:342-685) Lactoferrin {Cow (Bos taurus)
[TaxId: 9913]}
Length = 344
Score = 22.8 bits (48), Expect = 7.3
Identities = 4/19 (21%), Positives = 6/19 (31%)
Query: 36 RQFKPNWHCVVGHCYGACV 54
+Q N C C+
Sbjct: 22 QQSGQNVTCATASTTDDCI 40
>d1ieja_ c.94.1.2 (A:) Ovotransferrin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 329
Score = 22.7 bits (48), Expect = 8.5
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 31 LREFNRQFKPNWHCVVGHCYGACV 54
LR+ +Q + + CV Y C+
Sbjct: 20 LRDLTQQERISLTCVQKATYLDCI 43
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.330 0.138 0.443
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 307,648
Number of extensions: 11986
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 24
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.0 bits)