BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1882
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WSC|A Chain A, Crystal Structure Of St0229, Function Unknown Protein From
Sulfolobus Tokodaii
pdb|1WSC|B Chain B, Crystal Structure Of St0229, Function Unknown Protein From
Sulfolobus Tokodaii
Length = 230
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 24/170 (14%)
Query: 55 HLHSLEPPNPPSGISNDAFPLFVTWKI--GKDQRLRGCIGTFNAIN-LHGGLREYAVTSA 111
+L SL P I N FVT + G LRGCIG A+ L + + A+ +A
Sbjct: 42 YLSSLNDP-----ILNKKGLAFVTLETYYGNSTSLRGCIGYVEAVAPLKEIVSKAAIAAA 96
Query: 112 FKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTDW------KIGVHGIRIEFHNERGNK 165
F D RF P++ EF + + V++L ++ + W K+G G+ +E+ G
Sbjct: 97 FSDPRFPPLSKGEFDNIIIEVTVLTKPQEIDVENRWELPKKIKVGEDGLIVEY----GIL 152
Query: 166 RTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCN--IKLTRYQ 213
+ LP+V E WD+ ++ L + K + PD N +K+ ++Q
Sbjct: 153 YSGLLLPQVPXEYCWDE----ETFLAETCIKAGLEPDCWLNNKVKIKKFQ 198
>pdb|1ZQ7|A Chain A, X-Ray Crystal Structure Of Protein Q8pzk8 From
Methanosarcina Mazei. Northeast Structural Genomics
Consortium Target Mar9.
pdb|1ZQ7|B Chain B, X-Ray Crystal Structure Of Protein Q8pzk8 From
Methanosarcina Mazei. Northeast Structural Genomics
Consortium Target Mar9.
pdb|1ZQ7|C Chain C, X-Ray Crystal Structure Of Protein Q8pzk8 From
Methanosarcina Mazei. Northeast Structural Genomics
Consortium Target Mar9.
pdb|1ZQ7|D Chain D, X-Ray Crystal Structure Of Protein Q8pzk8 From
Methanosarcina Mazei. Northeast Structural Genomics
Consortium Target Mar9
Length = 207
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 75 LFVTWKIGKDQRLRGCIG-TFNAINLHGGLREYAVTSAFKDSRFNPITVDEFSKLHVSVS 133
+FVT G LRGCIG + L + + A+++A +D RF + DE + V V+
Sbjct: 47 VFVTLTEGG--LLRGCIGHPYPDSTLKEAILDSAISAATRDPRFPTVEQDEXKNILVEVT 104
Query: 134 ILRHFEDGN----DYTD-WKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDS 188
IL E N + D +IG HG+ ++ +G LP+VAPE D I +
Sbjct: 105 ILTQPEKINASPKELPDKVEIGKHGLIVKQGYCQG-----LLLPQVAPENDXDSIDFLSH 159
Query: 189 LLRKGGF 195
K G
Sbjct: 160 TCXKAGL 166
>pdb|1VAJ|A Chain A, Crystal Structure Of Uncharacterized Protein Ph0010 From
Pyrococcus Horikoshii
Length = 214
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 24/178 (13%)
Query: 57 HSLEPPN--PPSGISNDAFPLFVT---WKIGKDQRLRGCIGTFNAI-NLHGGLREYAVTS 110
+EPP PP +FVT + + LRGCIG I L + A+ S
Sbjct: 29 KEIEPPKDTPPELWEKXG--VFVTLNRYNVPPQTALRGCIGFPTPIYPLVEATIKAAIYS 86
Query: 111 AFKDSRFNPITVDEFSKLHVSVSILRHFE-----DGNDYTDWKIGVHGIRIEFHNERGNK 165
A D RF P+ ++E L V VS+L E K+G G+ +E
Sbjct: 87 AVDDPRFPPVKLEEXDNLVVEVSVLTPPELIEGPPEERPRKIKVGRDGLIVE-----KGI 141
Query: 166 RTATYLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPD--IRCNIKLTRYQSELVSVSY 221
+ LP+V E GWD+ + L + +K + PD + + K+ ++ +E+ Y
Sbjct: 142 YSGLLLPQVPVEWGWDE----EEFLAETCWKAGLPPDCWLDEDTKVYKFTAEIFEEEY 195
>pdb|2CDO|A Chain A, Structure Of Agarase Carbohydrate Binding Module In
Complex With Neoagarohexaose
pdb|2CDO|B Chain B, Structure Of Agarase Carbohydrate Binding Module In
Complex With Neoagarohexaose
pdb|2CDO|C Chain C, Structure Of Agarase Carbohydrate Binding Module In
Complex With Neoagarohexaose
pdb|2CDO|D Chain D, Structure Of Agarase Carbohydrate Binding Module In
Complex With Neoagarohexaose
Length = 160
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 24/98 (24%)
Query: 107 AVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTDWKI----------------G 150
AV F D + P++V V+ + ++ + DY D+ I G
Sbjct: 36 AVGGTFSDGQAQPVSV-----YTVNGNTAINYVNQGDYADYTIAVAQAGNYTISYQAGSG 90
Query: 151 VHGIRIEFH-NERGNKRTATYLPEVAPEQGWDQIQTID 187
V G IEF NE G+ + T P QGWD Q ++
Sbjct: 91 VTGGSIEFXVNENGSWASKTVT--AVPNQGWDNFQPLN 126
>pdb|2CDP|A Chain A, Structure Of A Cbm6 In Complex With Neoagarohexaose
pdb|2CDP|B Chain B, Structure Of A Cbm6 In Complex With Neoagarohexaose
pdb|2CDP|C Chain C, Structure Of A Cbm6 In Complex With Neoagarohexaose
pdb|2CDP|D Chain D, Structure Of A Cbm6 In Complex With Neoagarohexaose
Length = 160
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 24/98 (24%)
Query: 107 AVTSAFKDSRFNPITVDEFSKLHVSVSILRHFEDGNDYTDWKI----------------G 150
AV F D + P++V V+ + ++ + DY D+ I G
Sbjct: 36 AVGGTFSDGQAQPVSV-----YTVNGNTAINYVNQGDYADYTIAVAQAGNYTISYQAGSG 90
Query: 151 VHGIRIEFH-NERGNKRTATYLPEVAPEQGWDQIQTID 187
V G IEF NE G+ + T P QGWD Q ++
Sbjct: 91 VTGGSIEFLVNENGSWASKTV--TAVPNQGWDNFQPLN 126
>pdb|2FPQ|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type D Light
Chain
Length = 444
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 60 EPPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAIN---LHGGLREYAVT-SAFKDS 115
+PP P S + P +++ KD L+G I F IN + L Y V S F
Sbjct: 68 KPPRPTSKYQSYYDPSYLSTDEQKDTFLKGIIKLFKRINERDIGKKLINYLVVGSPFMGD 127
Query: 116 RFNPITVDEFSKLHVSVSILRHFEDGNDYTDWKI 149
P +F++ H + + FE+G+ WK+
Sbjct: 128 SSTPEDTFDFTR-HTTNIAVEKFENGS----WKV 156
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,109,147
Number of Sequences: 62578
Number of extensions: 350505
Number of successful extensions: 764
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 760
Number of HSP's gapped (non-prelim): 6
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)