Query psy1882
Match_columns 233
No_of_seqs 173 out of 650
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 18:41:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1882.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1882hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zq7_A Hypothetical protein MM 100.0 2.3E-56 8E-61 388.0 14.7 169 41-219 7-187 (207)
2 1vaj_A Hypothetical protein PH 100.0 7.5E-56 2.6E-60 386.5 16.2 172 41-220 10-194 (214)
3 1wsc_A Hypothetical protein ST 100.0 5.9E-55 2E-59 384.4 11.4 174 40-221 16-206 (230)
4 1jdp_H CNP, C-type natriuretic 42.9 11 0.00037 22.3 1.4 23 1-23 2-24 (26)
5 3n57_C Atrial natriuretic fact 36.9 14 0.00049 22.2 1.3 21 3-23 5-25 (28)
6 3n56_C Natriuretic peptides B; 33.3 17 0.0006 22.4 1.3 22 2-23 7-28 (32)
7 1yk1_E Natriuretic peptides B; 31.1 23 0.0008 20.9 1.6 20 4-23 1-20 (26)
8 1yk0_E Atrial natriuretic fact 28.8 28 0.00097 20.5 1.6 20 4-23 1-20 (26)
9 1q01_A Lebetin 2 isoform alpha 26.2 38 0.0013 21.7 2.0 21 2-22 11-31 (38)
10 2fho_A Spliceosomal protein SF 20.1 28 0.00096 23.3 0.5 15 114-128 16-30 (47)
No 1
>1zq7_A Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8PZK8, structural genomics, PSI, protein structure initiative; 2.11A {Methanosarcina mazei} SCOP: d.309.1.1
Probab=100.00 E-value=2.3e-56 Score=388.04 Aligned_cols=169 Identities=24% Similarity=0.336 Sum_probs=150.2
Q ss_pred ChhHHhHHHHHHHHhhcCCCCCCC------CCCCCCCCCceEEEEEeCCCCcceeeeccCCC-ccHHHHHHHHHHHhhhc
Q psy1882 41 QPEMCFFCFDVLYCHLHSLEPPNP------PSGISNDAFPLFVTWKIGKDQRLRGCIGTFNA-INLHGGLREYAVTSAFK 113 (233)
Q Consensus 41 ~~~m~~~cfd~L~~~L~~~~~p~~------p~~~~~~~~g~FVTl~~~~~g~LRGCIGt~~~-~~L~~~i~~~Ai~AA~~ 113 (233)
.+.|+.+||++|+++|++...+.+ .+..+++++||||||++ +|+||||||||.| +||+++|++||++|||+
T Consensus 7 ~~~lv~lAR~aI~~~l~~~~~~~p~~~~~~~~~~l~~~~g~FVTl~~--~g~LRGCIGt~~p~~~L~~~i~~~Ai~AA~~ 84 (207)
T 1zq7_A 7 GRAAVKLARKTIEIFLSKGKSPRPDASGVELSPVFEEYRGVFVTLTE--GGLLRGCIGHPYPDSTLKEAILDSAISAATR 84 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCC---CCCCCCGGGGSBCCEEEEEEE--TTEEEEEEEECSCCSBHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHccCCCCCccccccCCChhhcCcccEEEEEEE--CCeEEEeeccCCccccHHHHHHHHHHHHccC
Confidence 467999999999999975433222 12345789999999994 8999999999999 79999999999999999
Q ss_pred CCCCCCCChhccccceEEEEeeecccCC-----CCcccccccccceEEEEEecCCCeeeeEEcCccCccCCCCHHHHHHH
Q psy1882 114 DSRFNPITVDEFSKLHVSVSILRHFEDG-----NDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDS 188 (233)
Q Consensus 114 DpRF~Pl~~~EL~~L~ieVSvL~~~e~~-----~~~~d~~~G~hGl~i~f~~~~G~~~~atfLP~Va~EqgW~~~~~l~~ 188 (233)
||||+||+.+||++|.|+||||++||++ .++.||+||+|||+|++ |. |+||||||||+|||||+++||++
T Consensus 85 DpRF~Pl~~~EL~~l~ieVsvLs~~e~~~~~~~~~~~~~~~G~hGlii~~----g~-~~g~lLPqVa~E~gWd~eefl~~ 159 (207)
T 1zq7_A 85 DPRFPTVEQDEMKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVKQ----GY-CQGLLLPQVAPENDMDSIDFLSH 159 (207)
T ss_dssp CTTSCCCCGGGGGGCEEEEEEECCCEECCSCTTTHHHHCCTTTCEEEEEE----TT-EEEEECTTHHHHTTCCHHHHHHH
T ss_pred CCCCCCCCHHHHcCcEEEEEEccCCEEcccccccCHHHcCCCCceEEEEE----CC-eeeEECCcchhhcCCCHHHHHHH
Confidence 9999999999999999999999999999 77789999999999995 54 68999999999999999999999
Q ss_pred HHHhcCCCCCCCcccCCceEEEEEEEEEEEe
Q psy1882 189 LLRKGGFKGPITPDIRCNIKLTRYQSELVSV 219 (233)
Q Consensus 189 l~~KaG~~~~~~~~~~~~i~l~Ryqs~k~~~ 219 (233)
+|+||||++ +.|+++++|+|||+++|+.
T Consensus 160 l~~KAG~~~---~~w~~~~~v~rf~~~~~~E 187 (207)
T 1zq7_A 160 TCMKAGLSP---DAWVKGAEVYCFEGQIFKE 187 (207)
T ss_dssp HHHHTTBCG---GGGTTTCEEEEECEEEEEE
T ss_pred HHHhcCCCh---hhccCceEEEEEEEEEEEE
Confidence 999999963 3465689999999999985
No 2
>1vaj_A Hypothetical protein PH0010; alpha + beta fold, structural genomics, unknown function; 1.82A {Pyrococcus horikoshii} SCOP: d.309.1.1
Probab=100.00 E-value=7.5e-56 Score=386.47 Aligned_cols=172 Identities=25% Similarity=0.323 Sum_probs=151.0
Q ss_pred ChhHHhHHHHHHHHhhcCCCCCCCC---CCCCCCCCceEEEEEeC---CCCcceeeeccCCC-ccHHHHHHHHHHHhhhc
Q psy1882 41 QPEMCFFCFDVLYCHLHSLEPPNPP---SGISNDAFPLFVTWKIG---KDQRLRGCIGTFNA-INLHGGLREYAVTSAFK 113 (233)
Q Consensus 41 ~~~m~~~cfd~L~~~L~~~~~p~~p---~~~~~~~~g~FVTl~~~---~~g~LRGCIGt~~~-~~L~~~i~~~Ai~AA~~ 113 (233)
.+.|+.+||++|+++|++...+.+| +..+++++||||||++. ++|+||||||||.| +||+++|++||++|||+
T Consensus 10 g~~lv~lAR~aI~~~L~~~~~~~~p~~~~~~l~~~~g~FVTl~~~~~~~~g~LRGCIGt~~p~~~L~~~i~~~Ai~AA~~ 89 (214)
T 1vaj_A 10 GEFLVRLARRAIEEYLKTGKEIEPPKDTPPELWEKMGVFVTLNRYNVPPQTALRGCIGFPTPIYPLVEATIKAAIYSAVD 89 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCCCTTCCGGGGSBCEEEEEEEETTSCGGGTEEEEEEESSSCSBHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHccCCCCCCCcccChhhcCcccEEEEEEECcCCCCCceeeeecCCCccccHHHHHHHHHHHhccC
Confidence 5789999999999999754432112 13347899999999964 57899999999999 79999999999999999
Q ss_pred CCCCCCCChhccccceEEEEeeecccCC-----CCcccccccccceEEEEEecCCCeeeeEEcCccCccCCCCHHHHHHH
Q psy1882 114 DSRFNPITVDEFSKLHVSVSILRHFEDG-----NDYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQIQTIDS 188 (233)
Q Consensus 114 DpRF~Pl~~~EL~~L~ieVSvL~~~e~~-----~~~~d~~~G~hGl~i~f~~~~G~~~~atfLP~Va~EqgW~~~~~l~~ 188 (233)
||||+||+.+||++|.|+||||++||++ +++.||+||+|||+|++ |. |+||||||||+||+|++++||++
T Consensus 90 DpRF~Pl~~~EL~~l~ieVsvL~~~e~i~~~~~~~~~~~~~G~hGlii~~----g~-~~g~~LPqV~~E~~W~~~e~l~~ 164 (214)
T 1vaj_A 90 DPRFPPVKLEEMDNLVVEVSVLTPPELIEGPPEERPRKIKVGRDGLIVEK----GI-YSGLLLPQVPVEWGWDEEEFLAE 164 (214)
T ss_dssp CTTSCCCCGGGGGGEEEEEEEECCCEECCSCGGGGGGGCCTTTCEEEEEE----TT-EEEEECTHHHHHHTCCHHHHHHH
T ss_pred CCCCCCCCHHHhcCcEEEEEEcCCcEEcccccccCHHHcCCCCceEEEEe----CC-eeEEECCCchhhcCCCHHHHHHH
Confidence 9999999999999999999999999999 56788999999999995 54 68999999999999999999999
Q ss_pred HHHhcCCCCCCCccc-CCceEEEEEEEEEEEee
Q psy1882 189 LLRKGGFKGPITPDI-RCNIKLTRYQSELVSVS 220 (233)
Q Consensus 189 l~~KaG~~~~~~~~~-~~~i~l~Ryqs~k~~~s 220 (233)
+|+|||+++ +.| .++++|+|||+++|+..
T Consensus 165 l~~KAG~~~---d~w~~~~~~l~rf~~~~f~E~ 194 (214)
T 1vaj_A 165 TCWKAGLPP---DCWLDEDTKVYKFTAEIFEEE 194 (214)
T ss_dssp HHHHTTSCT---TGGGCTTSEEEEECEEEEEES
T ss_pred HHHHcCCCc---ccccCCCeEEEEEEEEEEEEe
Confidence 999999963 223 36899999999999974
No 3
>1wsc_A Hypothetical protein ST0229; structural genomics, function unknown protein, unknown function; 2.45A {Sulfolobus tokodaii} SCOP: d.309.1.1
Probab=100.00 E-value=5.9e-55 Score=384.42 Aligned_cols=174 Identities=24% Similarity=0.344 Sum_probs=151.9
Q ss_pred cChhHHhHHHHHHHHhhcCCCC--C-C----CCCCCCCCCCceEEEEEeC--CCCcceeeeccCCC-ccHHHHHHHHHHH
Q psy1882 40 AQPEMCFFCFDVLYCHLHSLEP--P-N----PPSGISNDAFPLFVTWKIG--KDQRLRGCIGTFNA-INLHGGLREYAVT 109 (233)
Q Consensus 40 ~~~~m~~~cfd~L~~~L~~~~~--p-~----~p~~~~~~~~g~FVTl~~~--~~g~LRGCIGt~~~-~~L~~~i~~~Ai~ 109 (233)
..+.|+.+||++|+++|++... | . .| .++++++||||||++. ++|+||||||||.| +||+++|++||++
T Consensus 16 e~~~lv~lAR~aI~~~L~~~~~~~p~~~~~~~~-~~l~~~~g~FVTl~~~~~~~g~LRGCIGt~~p~~~L~~~i~~~Ai~ 94 (230)
T 1wsc_A 16 LGKVLIKIARDSIANKLGILKINLEDYLSSLND-PILNKKGLAFVTLETYYGNSTSLRGCIGYVEAVAPLKEIVSKAAIA 94 (230)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCSCHHHHHHHCCC-GGGGSEEEEEEEEEEECSSCEEEEEEEEEEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCCCCCccccccCc-hhhcCcccEEEEEEECCCCCCceeeeecCCCccccHHHHHHHHHHH
Confidence 3678999999999999976543 2 1 23 3458899999999953 47899999999999 7999999999999
Q ss_pred hhhcCCCCCCCChhccccceEEEEeeecccCCC------CcccccccccceEEEEEecCCCeeeeEEcCccCccCCCCHH
Q psy1882 110 SAFKDSRFNPITVDEFSKLHVSVSILRHFEDGN------DYTDWKIGVHGIRIEFHNERGNKRTATYLPEVAPEQGWDQI 183 (233)
Q Consensus 110 AA~~DpRF~Pl~~~EL~~L~ieVSvL~~~e~~~------~~~d~~~G~hGl~i~f~~~~G~~~~atfLP~Va~EqgW~~~ 183 (233)
|||+||||+||+.+||++|.|+||||++||++. ++.||+||+|||+|++ |..|+||||||||.||||+++
T Consensus 95 AA~~DpRF~Pl~~~EL~~l~ieVsvLs~~e~i~~~~~~~~~~~~~~G~hGlii~~----g~~~~g~lLPqV~~e~~w~~e 170 (230)
T 1wsc_A 95 AAFSDPRFPPLSKGEFDNIIIEVTVLTKPQEIDVENRWELPKKIKVGEDGLIVEY----GILYSGLLLPQVPMEYCWDEE 170 (230)
T ss_dssp HHHTCTTSCCCCHHHHTTEEEEEEEECCCEECCCSCGGGGGGGCCTTTCEEEEEE----TTTEEEEECTHHHHHTTCCHH
T ss_pred hccCCCCCCCCCHHHHcCcEEEEEEcCCcEEcccCCcccCHHHcCCCCCeEEEee----CCCceEEECCCcccccCCCHH
Confidence 999999999999999999999999999999984 5678999999999995 634789999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCccc-CCceEEEEEEEEEEEeeH
Q psy1882 184 QTIDSLLRKGGFKGPITPDI-RCNIKLTRYQSELVSVSY 221 (233)
Q Consensus 184 ~~l~~l~~KaG~~~~~~~~~-~~~i~l~Ryqs~k~~~sy 221 (233)
+||+++|+||||+++ .| ..+++|+|||+++|+..+
T Consensus 171 efl~~l~~KAGl~~~---~w~~~~~~v~rf~~~~f~E~~ 206 (230)
T 1wsc_A 171 TFLAETCIKAGLEPD---CWLNNKVKIKKFQGIIFREEK 206 (230)
T ss_dssp HHHHHHHHHHTSCTT---GGGCTTSEEEEECEEEEEESS
T ss_pred HHHHHHHHhCCCCCc---ccccCceEEEEEEEEEEEecC
Confidence 999999999999632 33 247999999999998643
No 4
>1jdp_H CNP, C-type natriuretic peptide; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens}
Probab=42.95 E-value=11 Score=22.35 Aligned_cols=23 Identities=26% Similarity=0.666 Sum_probs=18.6
Q ss_pred CCCCcccccceeccCCCCccccC
Q psy1882 1 MSSSCCGTKKQKLNNSTGVVCNG 23 (233)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (233)
+..||+|.|-.++...|..-||.
T Consensus 2 ~~~gCFG~riDRIgs~SglGC~~ 24 (26)
T 1jdp_H 2 LSKGCFGLKLDRIGSMSGLGCXX 24 (26)
T ss_pred CcccccCceecccccccCCCccc
Confidence 35799999998888888887864
No 5
>3n57_C Atrial natriuretic factor; insulysin, insulinase, A-beta degrading enzyme, cryptidase, hydrolase, hormone, disease mutation, diabetes mellitus; 3.03A {Homo sapiens} PDB: 1anp_A
Probab=36.85 E-value=14 Score=22.20 Aligned_cols=21 Identities=33% Similarity=0.808 Sum_probs=17.9
Q ss_pred CCcccccceeccCCCCccccC
Q psy1882 3 SSCCGTKKQKLNNSTGVVCNG 23 (233)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ 23 (233)
+||+|.|-.++...|..-||+
T Consensus 5 ~gCFG~riDRIgs~SglGC~~ 25 (28)
T 3n57_C 5 SSCFGGRMDRIGAQSGLGCNS 25 (28)
T ss_pred ccccCcccccccccccCCcCc
Confidence 799999998888888888864
No 6
>3n56_C Natriuretic peptides B; insulysin, insulinase, A-beta degrading enzyme, cryptidase, hydrolase, hormone, disease mutation, diabetes mellitus; 3.10A {Homo sapiens}
Probab=33.33 E-value=17 Score=22.44 Aligned_cols=22 Identities=32% Similarity=0.726 Sum_probs=18.5
Q ss_pred CCCcccccceeccCCCCccccC
Q psy1882 2 SSSCCGTKKQKLNNSTGVVCNG 23 (233)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (233)
.+||+|.+-.++...|..-||+
T Consensus 7 ~sgCFG~riDRIGs~SglGCn~ 28 (32)
T 3n56_C 7 GSGCFGRKMDRISSSSGLGCKV 28 (32)
T ss_pred cCCccccceeeecccccCcccc
Confidence 4799999988888888888864
No 7
>1yk1_E Natriuretic peptides B; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, hormone-growth factor receptor complex; HET: NAG; 2.90A {Homo sapiens}
Probab=31.13 E-value=23 Score=20.92 Aligned_cols=20 Identities=30% Similarity=0.755 Sum_probs=16.7
Q ss_pred CcccccceeccCCCCccccC
Q psy1882 4 SCCGTKKQKLNNSTGVVCNG 23 (233)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (233)
||+|.|--++...|..-||+
T Consensus 1 gCFG~riDRIgs~SglGC~~ 20 (26)
T 1yk1_E 1 GCFGRKMDRISSSSGLGCKV 20 (26)
T ss_dssp CTTCSCCSSCSSSCCSCCCC
T ss_pred CCcCcccccccccccCCCCC
Confidence 79999988888888888853
No 8
>1yk0_E Atrial natriuretic factor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, hormone-growth factor receptor complex; HET: NAG; 2.40A {Homo sapiens} PDB: 1t34_H*
Probab=28.75 E-value=28 Score=20.54 Aligned_cols=20 Identities=30% Similarity=0.811 Sum_probs=16.6
Q ss_pred CcccccceeccCCCCccccC
Q psy1882 4 SCCGTKKQKLNNSTGVVCNG 23 (233)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (233)
||+|.+--++...|..-||+
T Consensus 1 gCFG~riDRIgs~SglGC~~ 20 (26)
T 1yk0_E 1 SCFGGRMDRIGAQSGLGCNS 20 (26)
T ss_dssp CTTCSCCCCCSSSCCSCCCC
T ss_pred CCcCccccccccccCCCCCC
Confidence 79999988888888888853
No 9
>1q01_A Lebetin 2 isoform alpha; beta-bulged hairpain, blood clotting; NMR {Macrovipera lebetina}
Probab=26.22 E-value=38 Score=21.70 Aligned_cols=21 Identities=29% Similarity=0.781 Sum_probs=18.0
Q ss_pred CCCcccccceeccCCCCcccc
Q psy1882 2 SSSCCGTKKQKLNNSTGVVCN 22 (233)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (233)
.+||+|.|=-++...|..-||
T Consensus 11 ~sgCFG~riDRIGs~SglGCn 31 (38)
T 1q01_A 11 PNGCFGHKIDRIGSHSGLGCN 31 (38)
T ss_dssp SSSSSCCTTSCCCSSCCCCCS
T ss_pred CCCccccccccccccccCCCC
Confidence 579999998888888888885
No 10
>2fho_A Spliceosomal protein SF3B155; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.08 E-value=28 Score=23.28 Aligned_cols=15 Identities=27% Similarity=0.601 Sum_probs=13.4
Q ss_pred CCCCCCCChhccccc
Q psy1882 114 DSRFNPITVDEFSKL 128 (233)
Q Consensus 114 DpRF~Pl~~~EL~~L 128 (233)
|.|..|++.+||+.+
T Consensus 16 ~~rnrpltDEeLD~~ 30 (47)
T 2fho_A 16 DERNRPLSDEELDAM 30 (47)
T ss_dssp CCCCCCSCTTHHHHH
T ss_pred ccccCCCCHHHHHHh
Confidence 789999999999876
Done!