RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1882
         (233 letters)



>d1vaja1 d.309.1.1 (A:3-205) Hypothetical protein PH0010 {Archaeon
           Pyrococcus horikoshii [TaxId: 53953]}
          Length = 203

 Score =  158 bits (402), Expect = 2e-49
 Identities = 44/166 (26%), Positives = 67/166 (40%), Gaps = 16/166 (9%)

Query: 59  LEPPNPPSGISNDAFPLFVTWK---IGKDQRLRGCIGTFNAI-NLHGGLREYAVTSAFKD 114
           +EPP        +   +FVT     +     LRGCIG    I  L     + A+ SA  D
Sbjct: 29  IEPPKDTPPELWEKMGVFVTLNRYNVPPQTALRGCIGFPTPIYPLVEATIKAAIYSAVDD 88

Query: 115 SRFNPITVDEFSKLHVSVSILRHFE-----DGNDYTDWKIGVHGIRIEFHNERGNKRTAT 169
            RF P+ ++E   L V VS+L   E             K+G  G+ +E         +  
Sbjct: 89  PRFPPVKLEEMDNLVVEVSVLTPPELIEGPPEERPRKIKVGRDGLIVEK-----GIYSGL 143

Query: 170 YLPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSE 215
            LP+V  E GWD+ + +     K G       D   + K+ ++ +E
Sbjct: 144 LLPQVPVEWGWDEEEFLAETCWKAGLPPDCWLDE--DTKVYKFTAE 187


>d1wsca1 d.309.1.1 (A:3-227) Hypothetical protein ST0229 {Sulfolobus
           tokodaii [TaxId: 111955]}
          Length = 225

 Score =  158 bits (402), Expect = 3e-49
 Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 15/164 (9%)

Query: 61  PPNPPSGISNDAFPLFVTWKI--GKDQRLRGCIGTFNAI-NLHGGLREYAVTSAFKDSRF 117
             +    I N     FVT +   G    LRGCIG   A+  L   + + A+ +AF D RF
Sbjct: 41  LSSLNDPILNKKGLAFVTLETYYGNSTSLRGCIGYVEAVAPLKEIVSKAAIAAAFSDPRF 100

Query: 118 NPITVDEFSKLHVSVSILRHFEDGNDYTDW------KIGVHGIRIEFHNERGNKRTATYL 171
            P++  EF  + + V++L   ++ +    W      K+G  G+ +E+    G   +   L
Sbjct: 101 PPLSKGEFDNIIIEVTVLTKPQEIDVENRWELPKKIKVGEDGLIVEY----GILYSGLLL 156

Query: 172 PEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRYQSE 215
           P+V  E  WD+   +     K G +     +    +K+ ++Q  
Sbjct: 157 PQVPMEYCWDEETFLAETCIKAGLEPDCWLNN--KVKIKKFQGI 198


>d1zq7a1 d.309.1.1 (A:1-199) Hypothetical protein MM0484
           {Methanosarcina mazei [TaxId: 2209]}
          Length = 199

 Score =  145 bits (367), Expect = 3e-44
 Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 18/162 (11%)

Query: 61  PPNPPSGISNDAFPLFVTWKIGKDQRLRGCIGTFNAI-NLHGGLREYAVTSAFKDSRFNP 119
                S +  +   +FVT    +   LRGCIG       L   + + A+++A +D RF  
Sbjct: 33  SGVELSPVFEEYRGVFVTLT--EGGLLRGCIGHPYPDSTLKEAILDSAISAATRDPRFPT 90

Query: 120 ITVDEFSKLHVSVSILRHFE-----DGNDYTDWKIGVHGIRIEFHNERGNKRTATYLPEV 174
           +  DE   + V V+IL   E             +IG HG+ ++             LP+V
Sbjct: 91  VEQDEMKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVKQ-----GYCQGLLLPQV 145

Query: 175 APEQGWDQIQTIDSLLRKGGFKGPITPDI-RCNIKLTRYQSE 215
           APE   D I  +     K G    ++PD      ++  ++ +
Sbjct: 146 APENDMDSIDFLSHTCMKAG----LSPDAWVKGAEVYCFEGQ 183


>d1bcoa2 c.55.3.3 (A:258-480) mu transposase, core domain
           {Bacteriophage mu [TaxId: 10677]}
          Length = 223

 Score = 27.1 bits (59), Expect = 1.8
 Identities = 5/37 (13%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 156 IEFHNERGNKRTATYLPEVAPEQGWDQIQTIDSLLRK 192
           +   N R  + T     +++ +  +++     +++RK
Sbjct: 187 VAMFNARTGRETEMCGGKLSFDDVFEREYAR-TIVRK 222


>d1ic8a2 a.35.1.1 (A:87-180) Hepatocyte nuclear factor 1a
           (LFB1/HNF1) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 94

 Score = 25.6 bits (56), Expect = 2.3
 Identities = 13/66 (19%), Positives = 32/66 (48%), Gaps = 9/66 (13%)

Query: 171 LPEVAPEQGWDQIQTIDSLLRKGGFKGPITPDIRCNIKLTRY---QSELVSVS--YQDYL 225
           L  ++PE+   Q   +++LL++  ++  +   ++    L ++   Q E+V  +   Q +L
Sbjct: 3   LENLSPEEAAHQKAVVETLLQEDPWR--VAKMVK--SYLQQHNIPQREVVDTTGLNQSHL 58

Query: 226 NHWKNG 231
           +   N 
Sbjct: 59  SQHLNK 64


>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId:
           562]}
          Length = 195

 Score = 25.6 bits (56), Expect = 4.1
 Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)

Query: 115 SRFNPITVDEFSKLHVSVSILR 136
            RF  + V E S    +++ILR
Sbjct: 175 RRFQKVFVAEPSV-EDTIAILR 195


>d1m0sa2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase
          (RpiA), lid domain {Haemophilus influenzae [TaxId:
          727]}
          Length = 72

 Score = 23.9 bits (52), Expect = 6.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 11 QKLNNSTGVVCNG 23
          ++LNN  GVV NG
Sbjct: 59 KELNNVAGVVTNG 71


>d1o8ba2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase
          (RpiA), lid domain {Escherichia coli [TaxId: 562]}
          Length = 72

 Score = 23.5 bits (51), Expect = 8.3
 Identities = 5/13 (38%), Positives = 6/13 (46%)

Query: 11 QKLNNSTGVVCNG 23
            +N   GVV  G
Sbjct: 58 NAINAIPGVVTVG 70


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.445 

Gapped
Lambda     K      H
   0.267   0.0451    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 941,207
Number of extensions: 43316
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 11
Length of query: 233
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,281,736
Effective search space: 193542136
Effective search space used: 193542136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.1 bits)