BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1883
         (81 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1RSO|A Chain A, Hetero-Tetrameric L27 (Lin-2, Lin-7) Domain Complexes As
          Organization Platforms Of Supra-Molecular Assemblies
 pdb|1RSO|C Chain C, Hetero-Tetrameric L27 (Lin-2, Lin-7) Domain Complexes As
          Organization Platforms Of Supra-Molecular Assemblies
          Length = 60

 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/37 (62%), Positives = 29/37 (78%)

Query: 18 EAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKS 54
          +  RAL LLE+Y SKL+   D+QLRS+IERVI IF+S
Sbjct: 4  DTQRALHLLEEYRSKLSQTEDRQLRSSIERVISIFQS 40


>pdb|3LRA|A Chain A, Structural Basis For Assembling A Human Tripartite
          Complex Dlg1-Mpp7- Mals3
          Length = 254

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/37 (62%), Positives = 29/37 (78%)

Query: 18 EAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKS 54
          +  RAL LLE+Y SKL+   D+QLRS+IERVI IF+S
Sbjct: 6  DTQRALHLLEEYRSKLSQTEDRQLRSSIERVINIFQS 42


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,825,542
Number of Sequences: 62578
Number of extensions: 43634
Number of successful extensions: 83
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 2
length of query: 81
length of database: 14,973,337
effective HSP length: 50
effective length of query: 31
effective length of database: 11,844,437
effective search space: 367177547
effective search space used: 367177547
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)