BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1883
(81 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P31007|DLG1_DROME Disks large 1 tumor suppressor protein OS=Drosophila melanogaster
GN=dlg1 PE=1 SV=2
Length = 970
Score = 79.7 bits (195), Expect = 4e-15, Method: Composition-based stats.
Identities = 36/44 (81%), Positives = 41/44 (93%)
Query: 18 EAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALL 61
EAHRALELLEDYH++L++P D+ LR AIERVIRIFKSRLFQALL
Sbjct: 7 EAHRALELLEDYHARLSEPQDRALRIAIERVIRIFKSRLFQALL 50
>sp|Q811D0|DLG1_MOUSE Disks large homolog 1 OS=Mus musculus GN=Dlg1 PE=1 SV=1
Length = 905
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/44 (63%), Positives = 35/44 (79%)
Query: 18 EAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALL 61
+ RAL LLE+Y SKL+ D+QLRS+IERVI IF+S LFQAL+
Sbjct: 7 DTQRALHLLEEYRSKLSQTEDRQLRSSIERVINIFQSNLFQALI 50
>sp|Q62696|DLG1_RAT Disks large homolog 1 OS=Rattus norvegicus GN=Dlg1 PE=1 SV=1
Length = 911
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/44 (63%), Positives = 35/44 (79%)
Query: 18 EAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALL 61
+ RAL LLE+Y SKL+ D+QLRS+IERVI IF+S LFQAL+
Sbjct: 7 DTQRALHLLEEYRSKLSQTEDRQLRSSIERVISIFQSNLFQALI 50
>sp|Q12959|DLG1_HUMAN Disks large homolog 1 OS=Homo sapiens GN=DLG1 PE=1 SV=2
Length = 904
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/44 (63%), Positives = 35/44 (79%)
Query: 18 EAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALL 61
+ RAL LLE+Y SKL+ D+QLRS+IERVI IF+S LFQAL+
Sbjct: 7 DTQRALHLLEEYRSKLSQTEDRQLRSSIERVINIFQSNLFQALI 50
>sp|Q5PYH6|DLG1_DANRE Disks large homolog 1 OS=Danio rerio GN=dlg1 PE=2 SV=2
Length = 873
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/44 (61%), Positives = 34/44 (77%)
Query: 18 EAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALL 61
+A RAL+LLE+Y +KL+ D LR +IERVI IFKS LFQAL+
Sbjct: 7 DAQRALQLLEEYQTKLSQTGDPHLRLSIERVINIFKSTLFQALV 50
>sp|Q28C55|DLG1_XENTR Disks large homolog 1 OS=Xenopus tropicalis GN=dlg1 PE=2 SV=1
Length = 927
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/44 (61%), Positives = 32/44 (72%)
Query: 18 EAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALL 61
+ RAL LLE+Y KL DKQLR +IERVI IF+S LFQAL+
Sbjct: 7 DTQRALTLLEEYRCKLHQTEDKQLRKSIERVIGIFQSNLFQALI 50
>sp|Q6R005|DLG4_DANRE Disks large homolog 4 OS=Danio rerio GN=dlg4 PE=2 SV=1
Length = 801
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 18 EAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALL 61
+ RAL+ +E S D+ R+ ER++ IF+S LFQALL
Sbjct: 7 DTERALQAMEACQSA----GDEGFRTRAERLLTIFQSDLFQALL 46
>sp|Q09441|YP83_CAEEL ARID domain-containing protein C08B11.3 OS=Caenorhabditis elegans
GN=C08B11.3 PE=4 SV=1
Length = 1244
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 17 LEAHRALELLEDYHSKLTDPSDKQLRSA-IERVIRIFKSRLFQALLGQLGGAIGISVLGI 75
+E+ + LE Y KLTDP +KQ + A +R+F R + A L +L G+ V +
Sbjct: 1 MESRKRKSELEHYIDKLTDPPEKQRKMAEFYNSLRMFYKRRWNATL-KLPHVQGVEV-NL 58
Query: 76 FKIWD 80
++++D
Sbjct: 59 YRLYD 63
>sp|P44797|PUR8_HAEIN Adenylosuccinate lyase OS=Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd) GN=purB PE=3 SV=1
Length = 456
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 18 EAHRALELLEDYHSKLTDPSD--KQLRSAIERVIRIFKSRLFQALLGQLGGAIG 69
E ++ + LL H + PS K++ + + R+ R FK +LG++ GA+G
Sbjct: 159 EEYKTIPLLSRTHGQPASPSTVGKEMANVVYRLKRQFKQLQNAEILGKINGAVG 212
>sp|O59442|SECY_PYRHO Protein translocase subunit SecY OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=secY PE=3 SV=1
Length = 468
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 33 LTDPSDKQLRSAIERVIRIFKSRLFQALLGQLGGAIG 69
L +P D++ A++RV +F F+A + LGGA G
Sbjct: 101 LANPEDRRFYQALQRVFSVFMC-FFEAAIWVLGGAFG 136
>sp|Q8U019|SECY_PYRFU Protein translocase subunit SecY OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=secY PE=1
SV=1
Length = 468
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 33 LTDPSDKQLRSAIERVIRIFKSRLFQALLGQLGGAIG 69
L +P D++ A++RV +F F+A + LGGA G
Sbjct: 101 LANPEDRRFYQALQRVFSVFMC-FFEAAVWILGGAFG 136
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.142 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,501,306
Number of Sequences: 539616
Number of extensions: 852162
Number of successful extensions: 3020
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3013
Number of HSP's gapped (non-prelim): 13
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)