Query psy1883
Match_columns 81
No_of_seqs 43 out of 45
Neff 2.8
Searched_HMMs 29240
Date Fri Aug 16 18:43:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1883.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1883hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lra_A Disks large homolog 1, 99.9 1.3E-25 4.5E-30 170.0 6.3 56 14-69 2-57 (254)
2 1vf6_A PALS-1, PALS1-associate 96.3 0.0013 4.3E-08 43.5 1.4 47 19-65 2-48 (83)
3 3uit_A INAD-like protein, magu 95.1 0.0045 1.5E-07 47.4 0.5 51 16-66 6-56 (265)
4 1zl8_A LIN-7; heterodimer, alp 89.3 0.6 2.1E-05 28.5 4.2 44 17-65 7-50 (53)
5 2v9v_A Selenocysteine-specific 80.2 1.2 4.1E-05 27.8 2.5 41 18-64 67-113 (135)
6 3uit_A INAD-like protein, magu 62.3 21 0.0007 27.2 6.1 45 17-66 211-255 (265)
7 3bhd_A Thtpase, thiamine triph 61.5 5.3 0.00018 28.0 2.6 47 17-63 185-231 (234)
8 3iqc_A FLIS, flagellar protein 49.7 41 0.0014 22.1 5.3 56 19-74 59-116 (131)
9 3fwc_B Nuclear mRNA export pro 47.0 23 0.00079 22.5 3.6 15 47-61 39-53 (85)
10 2kdt_A Neuroendocrine converta 40.4 11 0.00038 22.2 1.2 11 55-65 32-42 (45)
11 3b4s_A Protein LUXT; APC91483. 39.4 36 0.0012 22.2 3.7 42 34-75 51-92 (94)
12 2b4j_C PC4 and SFRS1 interacti 39.2 23 0.0008 23.2 2.8 45 12-56 19-83 (98)
13 1lva_A Selenocysteine-specific 38.8 29 0.00099 24.4 3.4 40 19-64 68-113 (258)
14 1ylm_A Hypothetical protein BS 38.0 75 0.0026 20.0 6.3 51 13-67 3-56 (144)
15 3l32_A Phosphoprotein; antipar 37.6 16 0.00056 21.5 1.6 25 56-80 4-31 (45)
16 2q37_A OHCU decarboxylase; 2-O 36.6 41 0.0014 23.5 3.9 36 23-58 141-176 (181)
17 3fwb_B Nuclear mRNA export pro 36.4 29 0.001 20.6 2.7 16 46-61 8-23 (55)
18 2o70_A OHCU decarboxylase; URI 33.4 51 0.0017 22.7 3.9 36 23-58 129-164 (174)
19 3o7i_A OHCU decarboxylase; lya 32.9 52 0.0018 23.2 3.9 35 23-57 150-184 (189)
20 2voy_D Sarcoplasmic/endoplasmi 31.3 29 0.001 17.8 1.8 17 63-79 8-24 (26)
21 2v25_A Major cell-binding fact 30.6 62 0.0021 20.1 3.6 26 36-62 230-255 (259)
22 2o8i_A AGR_C_4230P, hypothetic 30.6 52 0.0018 22.4 3.5 36 23-58 125-160 (165)
23 3d9j_A RNA-binding protein 16; 30.6 1.1E+02 0.0039 19.9 5.3 30 4-33 25-54 (145)
24 2rbd_A BH2358 protein; putativ 29.7 39 0.0013 22.2 2.7 33 20-55 30-62 (171)
25 2zrr_A Mundticin KS immunity p 28.9 98 0.0034 21.1 4.6 42 13-54 28-70 (118)
26 2km4_A Regulator of TY1 transp 28.6 47 0.0016 21.6 2.9 19 37-55 98-116 (142)
27 2fz0_A R-snare NYV1P, V-snare 28.5 90 0.0031 22.2 4.5 35 23-57 106-140 (149)
28 2kou_A Dicer-like protein 4; A 28.3 36 0.0012 21.5 2.3 16 20-35 4-19 (102)
29 1q2z_A ATP-dependent DNA helic 27.4 68 0.0023 20.7 3.5 11 26-36 6-16 (120)
30 1vh6_A Flagellar protein FLIS; 26.3 87 0.003 21.0 4.0 39 21-61 58-96 (145)
31 1y74_B MLIN-2/CASK, peripheral 26.2 87 0.003 17.1 5.6 23 43-65 19-41 (50)
32 4h5g_A Amino acid ABC superfam 25.5 95 0.0032 19.8 3.9 27 36-62 206-233 (243)
33 1zhv_A Hypothetical protein AT 24.5 22 0.00076 23.8 0.7 23 10-32 102-124 (134)
34 1zvp_A Hypothetical protein VC 24.0 14 0.00049 24.8 -0.3 20 10-29 111-130 (133)
35 1ug0_A Splicing factor 4; SURP 23.7 42 0.0014 20.9 1.9 26 27-52 9-38 (88)
36 2lnm_A Protein TIC 40, chlorop 23.4 53 0.0018 18.9 2.2 17 37-53 42-58 (62)
37 1sz9_A PCF11 protein; RNA poly 22.8 58 0.002 21.5 2.6 76 3-80 25-113 (144)
38 1z9e_A PC4 and SFRS1 interacti 22.3 54 0.0019 22.4 2.4 46 12-57 19-84 (127)
39 3t98_A Nuclear pore complex pr 22.3 67 0.0023 18.8 2.5 15 42-56 31-45 (51)
40 2qts_A Acid-sensing ION channe 21.8 70 0.0024 23.4 3.0 26 54-79 403-428 (438)
41 1vh6_A Flagellar protein FLIS; 21.3 1.8E+02 0.006 19.4 4.8 41 22-64 33-73 (145)
42 1w07_A Acyl-COA oxidase; oxido 20.3 2.2E+02 0.0075 22.7 5.8 45 9-54 516-561 (659)
No 1
>3lra_A Disks large homolog 1, maguk P55 subfamily member protein LIN-7 homolog C; tripartite complex, L27 tetramer, cell junction; 2.95A {Homo sapiens} PDB: 1rso_A
Probab=99.92 E-value=1.3e-25 Score=169.97 Aligned_cols=56 Identities=50% Similarity=0.665 Sum_probs=54.0
Q ss_pred hchHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhH
Q psy1883 14 LNYLEAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALLGQLGGAIG 69 (81)
Q Consensus 14 ~~~~dAhRALeLLE~Y~~kL~~~~D~~Lr~aiervIniFkS~LFqALLDI~e~~~~ 69 (81)
++++||||||++||+||++|++++|++||++||||||+||||||||||||||||+.
T Consensus 2 ~~~~~~~ral~~l~~y~~~l~~~~d~~l~~~~~~~i~~f~s~lf~~lldi~e~ye~ 57 (254)
T 3lra_A 2 VRKQDTQRALHLLEEYRSKLSQTEDRQLRSSIERVINIFQSNLFQALIDIQEFYEV 57 (254)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCSSSCTTHHHHHHHHHHHHHSHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999984
No 2
>1vf6_A PALS-1, PALS1-associated tight junction protein; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Homo sapiens} SCOP: a.194.1.1
Probab=96.31 E-value=0.0013 Score=43.51 Aligned_cols=47 Identities=21% Similarity=0.325 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1883 19 AHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALLGQLG 65 (81)
Q Consensus 19 AhRALeLLE~Y~~kL~~~~D~~Lr~aiervIniFkS~LFqALLDI~e 65 (81)
.+|||+.+|..++||...+|-.=-..+.++=.+.||.||+-+|-.|.
T Consensus 2 t~rvLq~leRLQ~KL~erGd~s~~ekLs~lk~~LqSPLF~qILtlQq 48 (83)
T 1vf6_A 2 KLQVLQVLDRLKMKLQEKGDTSQNEKLSMFYETLKSPLFNQILTLQQ 48 (83)
T ss_dssp ---CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccccchHhHHHHHHHHHhCHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999997664
No 3
>3uit_A INAD-like protein, maguk P55 subfamily member 5, LIN-7 homolog B; L27 domain, cell polarization, cell adhesion; 2.05A {Mus musculus} PDB: 1y76_A 1y76_B 1y74_A
Probab=95.11 E-value=0.0045 Score=47.42 Aligned_cols=51 Identities=22% Similarity=0.325 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy1883 16 YLEAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALLGQLGG 66 (81)
Q Consensus 16 ~~dAhRALeLLE~Y~~kL~~~~D~~Lr~aiervIniFkS~LFqALLDI~e~ 66 (81)
..|++|||+.+|..++||...+|-.=-..+..+=++.||.||+-+|-.|.-
T Consensus 6 ~~~~~~~l~~~~rl~~kl~~~g~~~~~~~l~~~~~~l~splf~~il~lq~s 56 (265)
T 3uit_A 6 AAEKMQVLQVLDRLRGKLQEKGDTTQNEKLSAFYETLKSPLFNQILTLQQS 56 (265)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHhccccchHhHHHHHHHHHhChHHHHHHHHHHH
Confidence 358899999999999999999999999999999999999999999987753
No 4
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=89.34 E-value=0.6 Score=28.55 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1883 17 LEAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALLGQLG 65 (81)
Q Consensus 17 ~dAhRALeLLE~Y~~kL~~~~D~~Lr~aiervIniFkS~LFqALLDI~e 65 (81)
+|-.||+||||.-+..=.-| ++ .+..+=.+.||+.|+|.=++-|
T Consensus 7 RDv~RaiELle~lq~sgevp--~~---KL~aLq~VLqSdF~~aVREVYE 50 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVN--NA---KLASLQQVLQSEFFGAVREVYE 50 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSST--HH---HHHHHHHHHSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCC--cH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999887641112 22 2445556789999998765544
No 5
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=80.19 E-value=1.2 Score=27.77 Aligned_cols=41 Identities=29% Similarity=0.369 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCcH------HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1883 18 EAHRALELLEDYHSKLTDPSDK------QLRSAIERVIRIFKSRLFQALLGQL 64 (81)
Q Consensus 18 dAhRALeLLE~Y~~kL~~~~D~------~Lr~aiervIniFkS~LFqALLDI~ 64 (81)
=.++.++.|++||.+ +.++ +||+.+-+ -+...+|+++||-+
T Consensus 67 l~~~l~~~L~~yH~~---~P~~~G~~keeLr~~~~~---~~~~~~~~~ll~~l 113 (135)
T 2v9v_A 67 WWQAVTRALEEFHSR---YPLRPGLAREELRSRYFS---RLPARVYQALLEEW 113 (135)
T ss_dssp HHHHHHHHHHHHHHH---CTTSSCEEHHHHHHHHCT---TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---CCCccCCCHHHHHHHhcc---cCCHHHHHHHHHHH
Confidence 356788999999997 4443 66665532 23788999998754
No 6
>3uit_A INAD-like protein, maguk P55 subfamily member 5, LIN-7 homolog B; L27 domain, cell polarization, cell adhesion; 2.05A {Mus musculus} PDB: 1y76_A 1y76_B 1y74_A
Probab=62.29 E-value=21 Score=27.24 Aligned_cols=45 Identities=27% Similarity=0.380 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy1883 17 LEAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALLGQLGG 66 (81)
Q Consensus 17 ~dAhRALeLLE~Y~~kL~~~~D~~Lr~aiervIniFkS~LFqALLDI~e~ 66 (81)
+|..||+||||.-+..=.-|.-+ +..+=++.||..++|.=++-|.
T Consensus 211 ~d~~r~~~l~~~l~~~g~~~~~k-----l~~lq~vl~s~f~~~vrevy~~ 255 (265)
T 3uit_A 211 RDVSRAVELLERLQRSGELPPQK-----LQALQRVLQSRFCSAIREVYEQ 255 (265)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCHH-----HHHHHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCcHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999998753223222 4445567899999998766654
No 7
>3bhd_A Thtpase, thiamine triphosphatase; hydrolase, structural genomics consortium, CYTH SGC; HET: MSE CIT; 1.50A {Homo sapiens} PDB: 2jmu_A
Probab=61.47 E-value=5.3 Score=28.03 Aligned_cols=47 Identities=23% Similarity=0.295 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1883 17 LEAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALLGQ 63 (81)
Q Consensus 17 ~dAhRALeLLE~Y~~kL~~~~D~~Lr~aiervIniFkS~LFqALLDI 63 (81)
.++..+.+.+.+.-.+|.-+.+...++.++|.++.++.++||.||..
T Consensus 185 ~~~~~~~~~l~~la~~Lgl~~~~~~~~k~~~~l~~~~~~~y~~~~~~ 231 (234)
T 3bhd_A 185 AEVPTALEKIHRLSSMLGVPAQETAPAKLIVYLQRFRPQDYQRLLEV 231 (234)
T ss_dssp GGHHHHHHHHHHHHHHHTCCTTCCCCCHHHHHHHHHCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCCCccccchHHHHHHHHHhCHHHHHHHHhh
Confidence 45667777778888888777777889999999999999999999854
No 8
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=49.70 E-value=41 Score=22.13 Aligned_cols=56 Identities=11% Similarity=0.039 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHhHHHHhh
Q psy1883 19 AHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALL--GQLGGAIGISVLG 74 (81)
Q Consensus 19 AhRALeLLE~Y~~kL~~~~D~~Lr~aiervIniFkS~LFqALL--DI~e~~~~~~~~~ 74 (81)
-.+|..++.+-...|+.....++...+.++=+-+..+|.+|-+ |....-+.+.++.
T Consensus 59 i~KA~~Ii~~L~~sLd~e~GgeiA~nL~~LY~y~~~~L~~An~~~d~~~l~ev~~ll~ 116 (131)
T 3iqc_A 59 INRVTDIFTELLNILDYEKGGEVAVYLTGLYTHQIKVLTQANVENDASKIDLVLNVAR 116 (131)
T ss_dssp HHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHH
Confidence 3578888888888888776678888888888888888888877 5544444555443
No 9
>3fwc_B Nuclear mRNA export protein SAC3; gene gating, complex, calcium, cell cycle, cell division, mitosis, mRNA transport, nuclear pore complex, nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=46.95 E-value=23 Score=22.46 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy1883 47 RVIRIFKSRLFQALL 61 (81)
Q Consensus 47 rvIniFkS~LFqALL 61 (81)
++|+.+.+.||+|.+
T Consensus 39 ~iI~sLs~eLy~AFi 53 (85)
T 3fwc_B 39 DFIDTMTRELYDAFL 53 (85)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHH
Confidence 568999999999998
No 10
>2kdt_A Neuroendocrine convertase 1; secretory granules, prohorme convertase, calcium, cleavage on PAIR of basic residues, cytoplasmic vesicle; NMR {Mus musculus} PDB: 2ke3_A
Probab=40.40 E-value=11 Score=22.22 Aligned_cols=11 Identities=55% Similarity=0.764 Sum_probs=8.0
Q ss_pred HHHHHHHHhhh
Q psy1883 55 RLFQALLGQLG 65 (81)
Q Consensus 55 ~LFqALLDI~e 65 (81)
+|-|||+||+.
T Consensus 32 rLlQAL~~il~ 42 (45)
T 2kdt_A 32 RLLQALMDILN 42 (45)
T ss_dssp THHHHHHHHTT
T ss_pred HHHHHHHHHHc
Confidence 57788888763
No 11
>3b4s_A Protein LUXT; APC91483.1, LUXT domain, structural genomics, PSI-2, protein structure initiative; 3.10A {Vibrio parahaemolyticus rimd 2210633}
Probab=39.43 E-value=36 Score=22.16 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=37.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHhhh
Q psy1883 34 TDPSDKQLRSAIERVIRIFKSRLFQALLGQLGGAIGISVLGI 75 (81)
Q Consensus 34 ~~~~D~~Lr~aiervIniFkS~LFqALLDI~e~~~~~~~~~~ 75 (81)
++..++-..++++|+..+--+++.+.--...|+..|-|++-+
T Consensus 51 ~~~~~~f~~~~i~~l~~~~~~~~G~~~~k~le~LiGrS~v~l 92 (94)
T 3b4s_A 51 SESAHEFAANGIDRLYKMVESQFGSGGDKELEWLIGRSLIQM 92 (94)
T ss_dssp SCCHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCccHHHHhHHHHHHHHHHHHhCccHHHHHHHHHhHHHHHH
Confidence 567788888999999999999999999999999999998754
No 12
>2b4j_C PC4 and SFRS1 interacting protein; HIV, integration, transcription, viral protein, recombinatio; 2.02A {Homo sapiens} SCOP: a.48.4.1 PDB: 3f9k_C 3hpg_G 3u88_C* 3hph_E
Probab=39.19 E-value=23 Score=23.15 Aligned_cols=45 Identities=16% Similarity=0.252 Sum_probs=33.8
Q ss_pred HhhchHHHHHHHHHHHHHHhh------c-------------CC-CCcHHHHHHHHHHHHHHHHHH
Q psy1883 12 YLLNYLEAHRALELLEDYHSK------L-------------TD-PSDKQLRSAIERVIRIFKSRL 56 (81)
Q Consensus 12 ~~~~~~dAhRALeLLE~Y~~k------L-------------~~-~~D~~Lr~aiervIniFkS~L 56 (81)
+-++..|..++|+.||++..- | .+ .++..+|..++.+-|-||+-+
T Consensus 19 L~~~~~Dv~kcl~~L~~l~~l~~T~~mL~rnpe~V~t~kklRry~g~q~Ir~kA~~iY~kfK~~f 83 (98)
T 2b4j_C 19 LKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNKFKNMF 83 (98)
T ss_dssp TCTTSCCHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHC-
T ss_pred HccCCCCHHHHHHHHHHHhcccccHHHHhhChHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 345677999999999998752 1 11 567889999999999998854
No 13
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=38.81 E-value=29 Score=24.42 Aligned_cols=40 Identities=30% Similarity=0.401 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhcCCCCc------HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1883 19 AHRALELLEDYHSKLTDPSD------KQLRSAIERVIRIFKSRLFQALLGQL 64 (81)
Q Consensus 19 AhRALeLLE~Y~~kL~~~~D------~~Lr~aiervIniFkS~LFqALLDI~ 64 (81)
.++.++.|++||.+ +.+ ++|++.+.+ -+...+|+++|+-+
T Consensus 68 ~~~l~~~L~~~H~~---~P~~~G~~~~~L~~~~~~---~~~~~l~~~ll~~l 113 (258)
T 1lva_A 68 WQAVTRALEEFHSR---YPLRPGLAREELRSRYFS---RLPARVYQALLEEW 113 (258)
T ss_dssp HHHHHHHHHHHHHH---CTTSSCEEHHHHHHHHCT---TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCccCCCHHHHHHhccc---cCCHHHHHHHHHHH
Confidence 45788899999997 333 466665521 13668899998754
No 14
>1ylm_A Hypothetical protein BSU32300; MCSG, structural genomics, hypothetical cytosolic protein, PSI, protein structure initiative; 1.83A {Bacillus subtilis subsp}
Probab=38.00 E-value=75 Score=20.02 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=35.3
Q ss_pred hhchHHHHHHHHHHHHHHhhcCC---CCcHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy1883 13 LLNYLEAHRALELLEDYHSKLTD---PSDKQLRSAIERVIRIFKSRLFQALLGQLGGA 67 (81)
Q Consensus 13 ~~~~~dAhRALeLLE~Y~~kL~~---~~D~~Lr~aiervIniFkS~LFqALLDI~e~~ 67 (81)
++++..-.++++.+++|-..|.. ..|+-.+.+++|.+.+ .++|..|+...+
T Consensus 3 ~vd~~~i~~kl~~i~~~l~~l~~~~~~~d~~~~~av~~~l~~----~~Ea~~di~~~i 56 (144)
T 1ylm_A 3 FVDRSKIEKTLGFFEHQLALFDSQTDWQSEIGELALQRIGHL----LIECILDTGNDM 56 (144)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTSCCCSSSHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhhhccCHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 44555566777777777777765 3667778888877765 577888886543
No 15
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=37.64 E-value=16 Score=21.47 Aligned_cols=25 Identities=40% Similarity=0.571 Sum_probs=14.6
Q ss_pred HHHHHHHhhhHHhH---HHHhhhhhhcc
Q psy1883 56 LFQALLGQLGGAIG---ISVLGIFKIWD 80 (81)
Q Consensus 56 LFqALLDI~e~~~~---~~~~~~~~~~~ 80 (81)
.||+-||-..-..- =+-=|+||||.
T Consensus 4 pfQs~LD~vG~qiVrkmKtGe~FfKiWS 31 (45)
T 3l32_A 4 LFQSYLDNVGVQIVRQMRSGERFLKIWS 31 (45)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence 57777765443331 12247999994
No 16
>2q37_A OHCU decarboxylase; 2-OXO-4-hydroxy-4-carboxy-5-ureidoimidazoline, plant protein, lyase; HET: 3AL; 2.50A {Arabidopsis thaliana} SCOP: a.288.1.1
Probab=36.58 E-value=41 Score=23.54 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=30.9
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHH
Q psy1883 23 LELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQ 58 (81)
Q Consensus 23 LeLLE~Y~~kL~~~~D~~Lr~aiervIniFkS~LFq 58 (81)
=++|+..+.+|.+..+.|++.+++=+..|-..||-.
T Consensus 141 ~~IL~~l~~RL~N~~~~E~~~Al~Ev~kIa~~RL~~ 176 (181)
T 2q37_A 141 AEMLHALKERYENRPIVELEIAAMEQMKITELRMAK 176 (181)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888889999999999999999999998888744
No 17
>3fwb_B Nuclear mRNA export protein SAC3; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae}
Probab=36.35 E-value=29 Score=20.60 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy1883 46 ERVIRIFKSRLFQALL 61 (81)
Q Consensus 46 ervIniFkS~LFqALL 61 (81)
.++|+.+.+.||+|.|
T Consensus 8 ~~iI~sLs~eLy~AFi 23 (55)
T 3fwb_B 8 KDFIDTMTRELYDAFL 23 (55)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4789999999999998
No 18
>2o70_A OHCU decarboxylase; URIC acid, decarboxylation, 5-hydroxyisourate, allantoin, lyase; 1.80A {Danio rerio} SCOP: a.288.1.1 PDB: 2o73_A* 2o74_A*
Probab=33.43 E-value=51 Score=22.67 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=31.6
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHH
Q psy1883 23 LELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQ 58 (81)
Q Consensus 23 LeLLE~Y~~kL~~~~D~~Lr~aiervIniFkS~LFq 58 (81)
=++|+..+.+|....+.|++.+++=+..|-..||-.
T Consensus 129 ~~IL~~l~~Rl~n~~~~E~~~a~~ev~kIa~~RL~~ 164 (174)
T 2o70_A 129 ADIVRQLSERLKNRRTAELECAIEEVKKICSLRLHS 164 (174)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999998888743
No 19
>3o7i_A OHCU decarboxylase; lyase; 1.50A {Klebsiella pneumoniae subsp} PDB: 3o7h_A 3o7j_A* 3o7k_A
Probab=32.93 E-value=52 Score=23.23 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=30.3
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHH
Q psy1883 23 LELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLF 57 (81)
Q Consensus 23 LeLLE~Y~~kL~~~~D~~Lr~aiervIniFkS~LF 57 (81)
=++|++.+.+|.+..+.|++.+++=+..|-..||=
T Consensus 150 ~~IL~~l~~Rl~nd~e~E~~~Al~Ev~kIa~~RL~ 184 (189)
T 3o7i_A 150 EEILQALTRRLQHTADEEVAEALAQLREITMLRLE 184 (189)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 36788889999999999999999999888888863
No 20
>2voy_D Sarcoplasmic/endoplasmic reticulum calcium ATPase 1; hydrolasep-type ATPase, cryo-EM, helical reconstruction, membrane protein; 17.50A {Oryctolagus cuniculus}
Probab=31.32 E-value=29 Score=17.79 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=13.9
Q ss_pred hhhHHhHHHHhhhhhhc
Q psy1883 63 QLGGAIGISVLGIFKIW 79 (81)
Q Consensus 63 I~e~~~~~~~~~~~~~~ 79 (81)
++..|.|++.+|+|-+|
T Consensus 8 viG~yvg~aTvg~f~~w 24 (26)
T 2voy_D 8 AIGGYVGAATVGAAAWX 24 (26)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhheeEEe
Confidence 56778999999999888
No 21
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=30.62 E-value=62 Score=20.08 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=21.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1883 36 PSDKQLRSAIERVIRIFKSRLFQALLG 62 (81)
Q Consensus 36 ~~D~~Lr~aiervIniFkS~LFqALLD 62 (81)
.++++++..+++.+...+.+ ++++++
T Consensus 230 k~~~~l~~~~~~~l~~~~~~-~~~i~~ 255 (259)
T 2v25_A 230 KDDPAFAKYVDDFVKEHKNE-IDALAK 255 (259)
T ss_dssp TTCHHHHHHHHHHHHHTHHH-HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 44689999999999999988 777754
No 22
>2o8i_A AGR_C_4230P, hypothetical protein ATU2327; agrobacterium tumefaciens STR. C58, structural GENO PSI-2, protein structure initiative; 2.60A {Agrobacterium tumefaciens str} SCOP: a.288.1.1
Probab=30.57 E-value=52 Score=22.43 Aligned_cols=36 Identities=17% Similarity=0.342 Sum_probs=30.8
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHH
Q psy1883 23 LELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQ 58 (81)
Q Consensus 23 LeLLE~Y~~kL~~~~D~~Lr~aiervIniFkS~LFq 58 (81)
=++|+..+.+|.+..+.|++.+++=+..|-..||-.
T Consensus 125 ~~Il~~l~~Rl~nd~~~E~~~a~~e~~kIa~~RL~~ 160 (165)
T 2o8i_A 125 HDILSAFDTRIDNNAAQEFATATGQVEKIAWLRLAS 160 (165)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 368888889999999999999999998888888743
No 23
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=30.56 E-value=1.1e+02 Score=19.92 Aligned_cols=30 Identities=7% Similarity=0.091 Sum_probs=18.9
Q ss_pred ccchhhHHHhhchHHHHHHHHHHHHHHhhc
Q psy1883 4 RKKELSTYYLLNYLEAHRALELLEDYHSKL 33 (81)
Q Consensus 4 ~~~~~~~~~~~~~~dAhRALeLLE~Y~~kL 33 (81)
+-+.||...+.+...|..-.+.++++..+-
T Consensus 25 ~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~ 54 (145)
T 3d9j_A 25 KMTQITKAAIKAIKFYKHVVQSVEKFIQKC 54 (145)
T ss_dssp HHHHHHHHHHHTGGGHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344566666666666666667777666653
No 24
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}
Probab=29.70 E-value=39 Score=22.20 Aligned_cols=33 Identities=12% Similarity=0.335 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHH
Q psy1883 20 HRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSR 55 (81)
Q Consensus 20 hRALeLLE~Y~~kL~~~~D~~Lr~aiervIniFkS~ 55 (81)
.-.++.++-|.+ ..+|++|+.-+++.++..+.+
T Consensus 30 ~~~i~~~~~f~~---~~~D~elk~iL~~~~~~~~~~ 62 (171)
T 2rbd_A 30 NGLINGYRSFIN---HTGDEDLKNLIDEAIQAMQDE 62 (171)
T ss_dssp HHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHH
Confidence 344455555544 699999999999999876654
No 25
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=28.87 E-value=98 Score=21.07 Aligned_cols=42 Identities=12% Similarity=0.130 Sum_probs=29.9
Q ss_pred hhchHHHHHHHHHHHHHHhhcCC-CCcHHHHHHHHHHHHHHHH
Q psy1883 13 LLNYLEAHRALELLEDYHSKLTD-PSDKQLRSAIERVIRIFKS 54 (81)
Q Consensus 13 ~~~~~dAhRALeLLE~Y~~kL~~-~~D~~Lr~aiervIniFkS 54 (81)
-=+++...+|+.++++--+.|+. ++.++|+.-+..--+-+++
T Consensus 28 sGGkER~~~Ai~II~~Ll~~l~~~~~~~~Lk~vL~~Y~~ELk~ 70 (118)
T 2zrr_A 28 SGGDDRRKKAEVIITELLDDLEIDLGNESLRKVLGSYLKKLKN 70 (118)
T ss_dssp --CCCHHHHHHHHHHHHHHHHCSCSSSHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhc
Confidence 34677899999999999999986 5777777655544444443
No 26
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=28.58 E-value=47 Score=21.60 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=15.9
Q ss_pred CcHHHHHHHHHHHHHHHHH
Q psy1883 37 SDKQLRSAIERVIRIFKSR 55 (81)
Q Consensus 37 ~D~~Lr~aiervIniFkS~ 55 (81)
.|+..+..+.||+++.+++
T Consensus 98 ~~~~~~~kv~rvl~iWeer 116 (142)
T 2km4_A 98 FPRDLKKKLSRVVNILKER 116 (142)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcc
Confidence 4788899999999988775
No 27
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=28.47 E-value=90 Score=22.17 Aligned_cols=35 Identities=14% Similarity=0.375 Sum_probs=25.8
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHH
Q psy1883 23 LELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLF 57 (81)
Q Consensus 23 LeLLE~Y~~kL~~~~D~~Lr~aiervIniFkS~LF 57 (81)
|.+|.+-++-=+.+.|+.|..++.-+++.|...|-
T Consensus 106 iRlLSeLk~~~~~~~D~~l~~~~~~ild~FH~ELl 140 (149)
T 2fz0_A 106 IRILSGLQEYESNATNELLSSHVGQILDSFHEELV 140 (149)
T ss_dssp HHHHHHHTTSSCCCSTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccccCCchHHHHHHHHHHHHHHHHHHH
Confidence 34455544444567999999999999999987764
No 28
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=28.30 E-value=36 Score=21.55 Aligned_cols=16 Identities=19% Similarity=0.455 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhhcCC
Q psy1883 20 HRALELLEDYHSKLTD 35 (81)
Q Consensus 20 hRALeLLE~Y~~kL~~ 35 (81)
.-|+.+|..||++|.+
T Consensus 4 ~sAi~lL~~yC~~Lp~ 19 (102)
T 2kou_A 4 GSSISMMYKYCSRLPH 19 (102)
T ss_dssp SHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHhCCC
Confidence 4689999999999965
No 29
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=27.36 E-value=68 Score=20.70 Aligned_cols=11 Identities=9% Similarity=0.286 Sum_probs=7.4
Q ss_pred HHHHHhhcCCC
Q psy1883 26 LEDYHSKLTDP 36 (81)
Q Consensus 26 LE~Y~~kL~~~ 36 (81)
+++|++-|.+.
T Consensus 6 v~DFk~ll~~~ 16 (120)
T 1q2z_A 6 AENFRVLVKQK 16 (120)
T ss_dssp HHHHHHHTSSS
T ss_pred HHHHHHHHHcC
Confidence 56777777663
No 30
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=26.26 E-value=87 Score=20.95 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q psy1883 21 RALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALL 61 (81)
Q Consensus 21 RALeLLE~Y~~kL~~~~D~~Lr~aiervIniFkS~LFqALL 61 (81)
+|..++.+-...|+.. .++-..+.++=+-...+|.+|-+
T Consensus 58 KA~~Ii~eL~~sLd~e--geiA~nL~~LY~y~~~~L~~Ani 96 (145)
T 1vh6_A 58 KAQNIIQELNFTLNRN--IELSASMGAMYDYMYRRLVQANI 96 (145)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444333 44444444444444444444433
No 31
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=26.25 E-value=87 Score=17.11 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q psy1883 43 SAIERVIRIFKSRLFQALLGQLG 65 (81)
Q Consensus 43 ~aiervIniFkS~LFqALLDI~e 65 (81)
..+..+.+++++.=|||||..-|
T Consensus 19 ~~~~EL~~lL~~PHfqaLl~ahD 41 (50)
T 1y74_B 19 NDAKELKRILTQPHFMALLQTHD 41 (50)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCHHHHHHHHHHH
Confidence 45778889999999999997655
No 32
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=25.51 E-value=95 Score=19.82 Aligned_cols=27 Identities=22% Similarity=0.512 Sum_probs=21.3
Q ss_pred CCcHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy1883 36 PSDKQLRSAIERVIRIFKSR-LFQALLG 62 (81)
Q Consensus 36 ~~D~~Lr~aiervIniFkS~-LFqALLD 62 (81)
.+|++|+..+++.|...+.+ -++++++
T Consensus 206 k~~~~L~~~~n~aL~~l~~dG~~~~i~~ 233 (243)
T 4h5g_A 206 KNSDDLKEVVDKVIQKLKDEGTYQSYLE 233 (243)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 46889999999999988765 6666654
No 33
>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8
Probab=24.47 E-value=22 Score=23.82 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=19.0
Q ss_pred HHHhhchHHHHHHHHHHHHHHhh
Q psy1883 10 TYYLLNYLEAHRALELLEDYHSK 32 (81)
Q Consensus 10 ~~~~~~~~dAhRALeLLE~Y~~k 32 (81)
-|++++..++.+|++.|++-...
T Consensus 102 D~IlVp~~~~~~Ai~aL~~~~~~ 124 (134)
T 1zhv_A 102 DHLLVRSNDLEKTADLLANAGHS 124 (134)
T ss_dssp EEEEEEGGGHHHHHHHHHHTTCE
T ss_pred cEEEEeHHHHHHHHHHHHHcCce
Confidence 36899999999999999875543
No 34
>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9
Probab=24.00 E-value=14 Score=24.75 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=17.1
Q ss_pred HHHhhchHHHHHHHHHHHHH
Q psy1883 10 TYYLLNYLEAHRALELLEDY 29 (81)
Q Consensus 10 ~~~~~~~~dAhRALeLLE~Y 29 (81)
-|++++..++++|++.|++.
T Consensus 111 DhIlVp~~~~~~A~~~L~~l 130 (133)
T 1zvp_A 111 DHIFVQKEKAQQALQALGEF 130 (133)
T ss_dssp EEEEEEGGGHHHHHHHHTTS
T ss_pred cEEEEehhHHHHHHHHHHHH
Confidence 37899999999999999753
No 35
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: a.217.1.1
Probab=23.66 E-value=42 Score=20.90 Aligned_cols=26 Identities=35% Similarity=0.590 Sum_probs=18.7
Q ss_pred HHHHhhcC----CCCcHHHHHHHHHHHHHH
Q psy1883 27 EDYHSKLT----DPSDKQLRSAIERVIRIF 52 (81)
Q Consensus 27 E~Y~~kL~----~~~D~~Lr~aiervIniF 52 (81)
|+|...|. -|.|+.++.-|+++..--
T Consensus 9 e~~~~~~~v~v~pP~d~~~~~iIdktA~fV 38 (88)
T 1ug0_A 9 EDYEQWLEIKVSPPEGAETRRVIEKLARFV 38 (88)
T ss_dssp THHHHHHTSCCSSGGGHHHHHHHHHHHHHH
T ss_pred ccccccceeeeCCCCCHHHHHHHHHHHHHH
Confidence 45655544 378899999999987643
No 36
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=23.41 E-value=53 Score=18.85 Aligned_cols=17 Identities=18% Similarity=0.546 Sum_probs=14.9
Q ss_pred CcHHHHHHHHHHHHHHH
Q psy1883 37 SDKQLRSAIERVIRIFK 53 (81)
Q Consensus 37 ~D~~Lr~aiervIniFk 53 (81)
.|+.++..+++++++|.
T Consensus 42 ~dP~v~~~~~~L~~~~~ 58 (62)
T 2lnm_A 42 NDKEVMDVFNKISQLFP 58 (62)
T ss_dssp TCHHHHHHHHHHHHHSS
T ss_pred hChHHHHHHHHHHHHhC
Confidence 58999999999999874
No 37
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=22.82 E-value=58 Score=21.49 Aligned_cols=76 Identities=16% Similarity=0.130 Sum_probs=45.6
Q ss_pred CccchhhHHHhhchHHHHHHHHHHHHHHhhcCCCCcH----------HHHHHHHHHHHHHHHHHHHHHHHhhhHH-h--H
Q psy1883 3 PRKKELSTYYLLNYLEAHRALELLEDYHSKLTDPSDK----------QLRSAIERVIRIFKSRLFQALLGQLGGA-I--G 69 (81)
Q Consensus 3 ~~~~~~~~~~~~~~~dAhRALeLLE~Y~~kL~~~~D~----------~Lr~aiervIniFkS~LFqALLDI~e~~-~--~ 69 (81)
|+-..|+...+-+...|....+.++++-.+- +.+. =+|+.=......|..+|+.++.+..+-- . -
T Consensus 25 ~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~--~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r 102 (144)
T 1sz9_A 25 PIITTLTKLAEENISCAQYFVDAIESRIEKC--MPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTR 102 (144)
T ss_dssp HHHHHHHHHHHHTGGGHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 4456678888888888888888888887652 1111 1222222345677777777776644321 1 2
Q ss_pred HHHhhhhhhcc
Q psy1883 70 ISVLGIFKIWD 80 (81)
Q Consensus 70 ~~~~~~~~~~~ 80 (81)
-+|.-.++||+
T Consensus 103 ~k~~rL~~~W~ 113 (144)
T 1sz9_A 103 TKLINMFKLWL 113 (144)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 35666777775
No 38
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} SCOP: a.48.4.1
Probab=22.35 E-value=54 Score=22.43 Aligned_cols=46 Identities=15% Similarity=0.290 Sum_probs=35.0
Q ss_pred HhhchHHHHHHHHHHHHHHhh-------------------cCC-CCcHHHHHHHHHHHHHHHHHHH
Q psy1883 12 YLLNYLEAHRALELLEDYHSK-------------------LTD-PSDKQLRSAIERVIRIFKSRLF 57 (81)
Q Consensus 12 ~~~~~~dAhRALeLLE~Y~~k-------------------L~~-~~D~~Lr~aiervIniFkS~LF 57 (81)
+-++..|..++|+.|+++..- +.+ .++..+|..+..+-+-||+.+-
T Consensus 19 L~v~~~Dv~kCl~~Leel~~l~vT~~mL~Rnpe~V~TlkklRrY~gnq~Ir~kA~~iY~kFK~lf~ 84 (127)
T 1z9e_A 19 LKIDNLDVNRCIEALDELASLQVTMQQAQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNKFKNMFL 84 (127)
T ss_dssp TCGGGCCHHHHHHHHHHHHHSCCCHHHHGGGHHHHHHHHHHTTCTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HccCCCCHHHHHHHHHHHccccccHHHHhhChHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh
Confidence 445677999999999988752 111 5668899999999999998663
No 39
>3t98_A Nuclear pore complex protein NUP54; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus}
Probab=22.33 E-value=67 Score=18.83 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy1883 42 RSAIERVIRIFKSRL 56 (81)
Q Consensus 42 r~aiervIniFkS~L 56 (81)
..++++|+++.|+++
T Consensus 31 Q~g~~~Li~ivk~Dl 45 (51)
T 3t98_A 31 QEGLSHLISIIKDDL 45 (51)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhH
Confidence 467899999999875
No 40
>2qts_A Acid-sensing ION channel; trimer, membrane protein; HET: MAL NAG; 1.90A {Gallus gallus} PDB: 3hgc_A 3ij4_A
Probab=21.77 E-value=70 Score=23.42 Aligned_cols=26 Identities=31% Similarity=0.589 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhhHHhHHHHhhhhhhc
Q psy1883 54 SRLFQALLGQLGGAIGISVLGIFKIW 79 (81)
Q Consensus 54 S~LFqALLDI~e~~~~~~~~~~~~~~ 79 (81)
.+|+..+=.++...+|+|+++++.|.
T Consensus 403 ~~lls~~GG~~GLflG~S~ls~~Ei~ 428 (438)
T 2qts_A 403 AGLLGDIGGQMGLFIGASILTVLELF 428 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHhcchHHHHHHHH
Confidence 34455555889999999999998764
No 41
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=21.29 E-value=1.8e+02 Score=19.42 Aligned_cols=41 Identities=10% Similarity=0.123 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1883 22 ALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALLGQL 64 (81)
Q Consensus 22 ALeLLE~Y~~kL~~~~D~~Lr~aiervIniFkS~LFqALLDI~ 64 (81)
|++-|..-...+.+..-+.-..+|.|.++|+ +.|-.+| |--
T Consensus 33 al~~l~~A~~aie~~d~~~k~~~i~KA~~Ii-~eL~~sL-d~e 73 (145)
T 1vh6_A 33 CLKFIRLAAQAIENDDMERKNENLIKAQNII-QELNFTL-NRN 73 (145)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHHHHc-CCc
Confidence 3333333333344556667778899999999 5676666 543
No 42
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Probab=20.25 E-value=2.2e+02 Score=22.65 Aligned_cols=45 Identities=16% Similarity=0.221 Sum_probs=37.1
Q ss_pred hHHHhhchHHHHHHHHHHHHHHhhcCCCC-cHHHHHHHHHHHHHHHH
Q psy1883 9 STYYLLNYLEAHRALELLEDYHSKLTDPS-DKQLRSAIERVIRIFKS 54 (81)
Q Consensus 9 ~~~~~~~~~dAhRALeLLE~Y~~kL~~~~-D~~Lr~aiervIniFkS 54 (81)
++++ ++...||--.-+++.|...+.+.. |++++..+.+|...|--
T Consensus 516 ~~~~-~~~a~a~~~~~~~~~f~~~~~~~~~~~~~~~~l~~l~~l~~l 561 (659)
T 1w07_A 516 LADL-VEAAIAHCQLIVVSKFIAKLEQDIGGKGVKKQLNNLCYIYAL 561 (659)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHTTSCCCSTTHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhH
Confidence 4444 447788888899999999999887 99999999999888753
Done!