RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1883
(81 letters)
>3lra_A Disks large homolog 1, maguk P55 subfamily member protein LIN-7
homolog C; tripartite complex, L27 tetramer, cell
junction; 2.95A {Homo sapiens} PDB: 1rso_A
Length = 254
Score = 71.9 bits (175), Expect = 4e-17
Identities = 28/44 (63%), Positives = 35/44 (79%)
Query: 18 EAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALL 61
+ RAL LLE+Y SKL+ D+QLRS+IERVI IF+S LFQAL+
Sbjct: 6 DTQRALHLLEEYRSKLSQTEDRQLRSSIERVINIFQSNLFQALI 49
>3uit_A INAD-like protein, maguk P55 subfamily member 5, LIN-7 homolog B;
L27 domain, cell polarization, cell adhesion; 2.05A
{Mus musculus} PDB: 1y76_A 1y76_B 1y74_A
Length = 265
Score = 46.5 bits (109), Expect = 8e-08
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 18 EAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALL 61
E + L++L+ KL + D + KS LF +L
Sbjct: 8 EKMQVLQVLDRLRGKLQEKGDTTQNEKLSAFYETLKSPLFNQIL 51
>2qts_A Acid-sensing ION channel; trimer, membrane protein; HET: MAL NAG;
1.90A {Gallus gallus} PDB: 3hgc_A 3ij4_A
Length = 438
Score = 28.9 bits (63), Expect = 0.13
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 45 IERVIRIFKSRLFQALLGQLGGAIGISVLGIFKIWDL 81
IE+ + L + GQ+G IG S+L + +++D
Sbjct: 394 IEQKKAYEVAGLLGDIGGQMGLFIGASILTVLELFDY 430
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative
splicing, HOST-virus interaction, UBL conjugation
pathway, zinc-finger, polymorphism; HET: FLC; 2.20A
{Homo sapiens} PDB: 2vjf_B*
Length = 63
Score = 27.5 bits (61), Expect = 0.13
Identities = 4/13 (30%), Positives = 9/13 (69%)
Query: 42 RSAIERVIRIFKS 54
+ I+ VI++F +
Sbjct: 51 KKEIQLVIKVFIA 63
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.17
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 16/62 (25%)
Query: 3 PRKKELSTYYLLNYLEAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALL- 61
+ KEL + NY+ A + P DK+ SA+ R + ++L A+
Sbjct: 117 VKTKEL----IKNYITARIMAK----------RPFDKKSNSALFRAVGEGNAQLV-AIFG 161
Query: 62 GQ 63
GQ
Sbjct: 162 GQ 163
Score = 23.9 bits (51), Expect = 8.4
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 10/51 (19%)
Query: 4 RKKELSTYYLLNYLEAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKS 54
RK + S +R L + +HS L P+ + + + F +
Sbjct: 412 RKLKFS----------NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA 452
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 75
Score = 26.3 bits (58), Expect = 0.49
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 42 RSAIERVIRIFKS 54
+ I +IF S
Sbjct: 63 YTVITFKQKIFMS 75
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain,
RNA polymerase II binding protein, phosphoprotein; NMR
{Saccharomyces cerevisiae} PDB: 2l0i_A*
Length = 142
Score = 26.1 bits (57), Expect = 1.1
Identities = 10/64 (15%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
Query: 3 PRKKELSTYYLLNYL----EAHRALELLEDYHSKLTD-------PSDKQLRSAIERVIRI 51
+++L YL+N++ + + ++ + + + + L+ + RV+ I
Sbjct: 53 NTRRKLLGLYLMNHVVQQAKGQKIIQFQDSFGKVAAEVLGRINQEFPRDLKKKLSRVVNI 112
Query: 52 FKSR 55
K R
Sbjct: 113 LKER 116
>2o70_A OHCU decarboxylase; URIC acid, decarboxylation, 5-hydroxyisourate,
allantoin, lyase; 1.80A {Danio rerio} SCOP: a.288.1.1
PDB: 2o73_A* 2o74_A*
Length = 174
Score = 26.2 bits (57), Expect = 1.2
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 20 HRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRL 56
+ +++ +L + +L AIE V +I RL
Sbjct: 126 NNKADIVRQLSERLKNRRTAELECAIEEVKKICSLRL 162
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 26.1 bits (58), Expect = 1.3
Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 20 HRALELLEDYHSKLTDPSDK-QLRSAIERVIRIFKS 54
+ LL D H+ L + ++ + ++F +
Sbjct: 64 FEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIA 99
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 1.3
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 4 RKKELSTYYLLN-YLEAHRALELLEDYHSKLTD 35
++ + ST + + YLE LE H + D
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
>1jl0_A Adometdc, S-adenosylmethionine decarboxylase proenzyme; spermidine
biosynthesis, lyase, pyruvate, sandwich, allosteric
enzyme, pyruvoyl; 1.50A {Homo sapiens} SCOP: d.156.1.1
PDB: 1msv_A 1i7b_A* 1i79_A* 1i72_A* 1i7c_A* 1i7m_A*
3dz6_A* 3dz2_A* 3dz5_A* 3dz4_A* 3dz7_A* 3h0w_A* 3h0v_A*
1jen_A 3dz3_A* 3ep9_A 3ep6_A* 3ep3_A* 3ep8_A* 3ep5_A*
...
Length = 334
Score = 26.2 bits (57), Expect = 1.3
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 16 YLEAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLF 57
Y E Y S T+ S I +V+ +FK F
Sbjct: 239 YWTIAITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKF 280
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus
jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A*
1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A
3n2y_A* 2hgz_A*
Length = 314
Score = 26.1 bits (58), Expect = 1.4
Identities = 6/36 (16%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 20 HRALELLEDYHSKLTDPSDK-QLRSAIERVIRIFKS 54
+ LL D + L + ++R + ++F++
Sbjct: 60 FDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEA 95
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A*
1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A*
2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Length = 510
Score = 25.7 bits (57), Expect = 1.6
Identities = 8/44 (18%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 13 LLNYLEAHRALELLEDYHS--KLTDPSDKQLRSAIERVIRIFKS 54
L+++ + LL + K+++ SD +L+ + + F++
Sbjct: 468 FLSHVISQHQ-ALLGKIRTDGKISEESDAKLKEIVTNFLAGFEA 510
>2q37_A OHCU decarboxylase; 2-OXO-4-hydroxy-4-carboxy-5-ureidoimidazoline,
plant protein, lyase; HET: 3AL; 2.50A {Arabidopsis
thaliana} SCOP: a.288.1.1
Length = 181
Score = 25.4 bits (55), Expect = 2.0
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 20 HRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALLGQ 63
E+L + + +L A ++I + R+ L
Sbjct: 138 RTHAEMLHALKERYENRPIVELEIAAMEQMKITELRM-AKLFSD 180
>1vf6_A PALS-1, PALS1-associated tight junction protein; L27 domain,
heterodimer, four-helical bundle, coiled-coil,
hydrophobic packing interactions; 2.10A {Homo sapiens}
SCOP: a.194.1.1
Length = 83
Score = 24.8 bits (53), Expect = 2.0
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 21 RALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALL 61
+ L++L+ KL + D + KS LF +L
Sbjct: 4 QVLQVLDRLKMKLQEKGDTSQNEKLSMFYETLKSPLFNQIL 44
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid
semi-synthetic, membrane protein; HET: 1EM; 1.72A
{Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C*
1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C*
2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C*
3ifx_A* 1j95_A 2jk5_C* ...
Length = 122
Score = 25.0 bits (55), Expect = 2.1
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 47 RVIRIFKSRLFQALLGQ-LGGAIGISVLGIF 76
R++++ R AL + G A + V+ +
Sbjct: 11 RLVKLLLGRHGSALHWRAAGAATVLLVIVLL 41
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima
MSB8}
Length = 515
Score = 25.3 bits (56), Expect = 2.3
Identities = 10/43 (23%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 13 LLNYLEAHRALELLEDYHS--KLTDPSDKQLRSAIERVIRIFK 53
L ++ ++L+D + +LT ++++L+ AIE F+
Sbjct: 473 FLRFMHEKHQ-DILDDIKTKKELTSETEEKLKKAIEEFKTTFR 514
>3o7i_A OHCU decarboxylase; lyase; 1.50A {Klebsiella pneumoniae subsp} PDB:
3o7h_A 3o7j_A* 3o7k_A
Length = 189
Score = 24.7 bits (53), Expect = 3.5
Identities = 9/44 (20%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 20 HRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALLGQ 63
E+L+ +L +D+++ A+ ++ I RL + +G+
Sbjct: 147 RSGEEILQALTRRLQHTADEEVAEALAQLREITMLRL-EGAIGE 189
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 24.6 bits (54), Expect = 3.9
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 7/39 (17%)
Query: 11 YYLLNYLEAHRALELLEDYHSKLT-DPSDKQLRSAIERV 48
L +A + D ++ +P +K + A+ +
Sbjct: 110 EKLGRLDQA------VLDLQRCVSLEPKNKVFQEALRNI 142
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A
{Streptomyces lividans} PDB: 1f6g_A
Length = 166
Score = 24.5 bits (53), Expect = 4.4
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 47 RVIRIFKSRLFQAL-LGQLGGAIGISVLGIF 76
R++++ R AL G A + V+ +
Sbjct: 17 RLVKLLLGRHGSALQWRAAGAATVLLVIVLL 47
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte
tuberculosis, nicotinamide adenine dinucleotide
(NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis}
PDB: 3qbd_A
Length = 368
Score = 24.5 bits (54), Expect = 4.7
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 23 LELLEDYHSKLTDPSDKQLRSAIERVIRI 51
L+L+E DP+ L I R I +
Sbjct: 205 LDLIEADPQAALDPAGDVLPELIRRAITV 233
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase,
single analysis, thermoalkaliphilic, hydrolase; 3.06A
{Bacillus SP} PDB: 1sky_B
Length = 502
Score = 24.6 bits (54), Expect = 4.7
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 13 LLNYLEAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKS 54
LL+++ A++ LL+ P K+L +AIE + F
Sbjct: 460 LLSFMRANKD-SLLDHIRQTGELPDTKELDAAIEEFKKGFTP 500
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Length = 507
Score = 24.6 bits (54), Expect = 5.0
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 13 LLNYLEAHRALELLEDYHS--KLTDPSDKQLRSAIERVIRIFKSR 55
L Y++ ++ E E S T+ ++ L+ AI+ + F +
Sbjct: 461 LRTYVKTNKP-EFQEIISSTKTFTEEAEALLKEAIQEQMERFLLQ 504
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA,
structure, membrane protein, metal transport; HET: PCA;
NMR {Streptomyces lividans} SCOP: f.14.1.1
Length = 155
Score = 24.0 bits (52), Expect = 5.4
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 47 RVIRIFKSRLFQALLGQ-LGGAIGISVLGIF 76
R++++ R AL + G A + V+ +
Sbjct: 34 RLVKLLLGRHGSALHWRAAGAATVLLVIVLL 64
>2o8i_A AGR_C_4230P, hypothetical protein ATU2327; agrobacterium
tumefaciens STR. C58, structural GENO PSI-2, protein
structure initiative; 2.60A {Agrobacterium tumefaciens
str} SCOP: a.288.1.1
Length = 165
Score = 24.3 bits (52), Expect = 5.5
Identities = 6/33 (18%), Positives = 19/33 (57%)
Query: 24 ELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRL 56
++L + +++ + + ++ +A +V +I RL
Sbjct: 126 DILSAFDTRIDNNAAQEFATATGQVEKIAWLRL 158
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox
control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 23.7 bits (52), Expect = 8.0
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 6 KELSTYYLLNYLEA 19
K YL +++A
Sbjct: 496 KAGGPDYLALHMQA 509
>1k87_A PUTA, proline dehydrogenase, proline dehydroge; multi-functional
protein, transcripti repressor, shuttling, dimer,
oxidoreductase; HET: FAD 1PE; 2.00A {Escherichia coli}
SCOP: a.176.1.1 c.1.23.2
Length = 669
Score = 23.9 bits (51), Expect = 9.6
Identities = 4/29 (13%), Positives = 13/29 (44%)
Query: 31 SKLTDPSDKQLRSAIERVIRIFKSRLFQA 59
S D +++ +++ + + +QA
Sbjct: 619 SAGLDLANEHRLASLSSALLNSALQKWQA 647
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.142 0.409
Gapped
Lambda K H
0.267 0.0434 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,275,984
Number of extensions: 63907
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 35
Length of query: 81
Length of database: 6,701,793
Length adjustment: 50
Effective length of query: 31
Effective length of database: 5,305,743
Effective search space: 164478033
Effective search space used: 164478033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.2 bits)