RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1883
(81 letters)
>d1rsoa_ a.194.1.1 (A:) Presynaptic protein sap97 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 60
Score = 74.7 bits (184), Expect = 1e-20
Identities = 28/44 (63%), Positives = 35/44 (79%)
Query: 18 EAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALL 61
+ RAL LLE+Y SKL+ D+QLRS+IERVI IF+S LFQAL+
Sbjct: 4 DTQRALHLLEEYRSKLSQTEDRQLRSSIERVISIFQSNLFQALI 47
>d2jdia1 a.69.1.1 (A:380-510) F1 ATP synthase alpha subunit, domain
3 {Cow (Bos taurus) [TaxId: 9913]}
Length = 131
Score = 25.2 bits (55), Expect = 0.72
Identities = 8/44 (18%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 13 LLNYLEAHRALELLEDYHS--KLTDPSDKQLRSAIERVIRIFKS 54
L+++ + LL + K+++ SD +L+ + + F++
Sbjct: 89 FLSHVISQHQ-ALLGKIRTDGKISEESDAKLKEIVTNFLAGFEA 131
>d1jnya1 b.43.3.1 (A:228-322) Elongation factor eEF-1alpha, domain
2 {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 95
Score = 24.5 bits (53), Expect = 1.2
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 36 PSDKQLRSAIERVIRI 51
P DK LR I+ V I
Sbjct: 1 PVDKPLRIPIQDVYSI 16
>d1jl0a_ d.156.1.1 (A:) S-adenosylmethionine decarboxylase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 325
Score = 24.9 bits (54), Expect = 1.4
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 16 YLEAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLF 57
Y E Y S T+ S I +V+ +FK F
Sbjct: 235 YWTIAITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKF 276
>d2q37a1 a.288.1.1 (A:6-160) OHCU decarboxylase, UraD {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 155
Score = 24.5 bits (53), Expect = 1.6
Identities = 6/37 (16%), Positives = 14/37 (37%)
Query: 20 HRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRL 56
E+L + + +L A ++I + R+
Sbjct: 113 RTHAEMLHALKERYENRPIVELEIAAMEQMKITELRM 149
>d2o8ia1 a.288.1.1 (A:1-165) Hypothetical protein Atu2327
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 165
Score = 24.1 bits (52), Expect = 1.8
Identities = 7/40 (17%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 24 ELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALLGQ 63
++L + +++ + + ++ +A +V +I RL ++L +
Sbjct: 126 DILSAFDTRIDNNAAQEFATATGQVEKIAWLRL-ASMLPE 164
>d2b8ea2 d.220.1.1 (A:435-547) Cation-transporting ATPase {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 113
Score = 23.2 bits (49), Expect = 3.9
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 29 YHSKLTDPSDKQLRSAIERVIRIFKSRLFQALLGQLGGAIGIS 71
++ A+E++ R K+ + A G++ G I +S
Sbjct: 71 LMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVS 113
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus
thermophilus [TaxId: 274]}
Length = 173
Score = 23.3 bits (50), Expect = 4.0
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 48 VIRIFKSRLFQALLGQLGGAIGISVLGIF 76
+ ++ +R+ ++ L G + S+L F
Sbjct: 3 PVALWLARVRWLVILILTGMVTSSILQGF 31
>d2fm9a1 a.257.1.1 (A:49-263) Cell invasion protein SipA, N-terminal
domain {Salmonella typhimurium [TaxId: 90371]}
Length = 215
Score = 23.0 bits (49), Expect = 4.9
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 12 YLLNYLEAHRALELLEDYHSKLTDPSDKQLRSAIE 46
Y+ + +E + L S LT DK A+E
Sbjct: 138 YIASCIEHNFGCTLDPLTRSNLTHLVDKAAAKAVE 172
>d1q8ia2 e.8.1.1 (A:390-783) Family B DNA polymerase {Escherichia
coli [TaxId: 562]}
Length = 394
Score = 23.0 bits (48), Expect = 5.6
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 38 DKQLRSAIERVIRIFKSRLFQALLGQLG 65
+QL+ E ++ + + GQLG
Sbjct: 365 TRQLQPVAEGILPFIEDNFATLMTGQLG 392
>d1skyb1 a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit, domain
3 {Bacillus sp., strain ps3 [TaxId: 1409]}
Length = 131
Score = 22.9 bits (49), Expect = 5.8
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 13 LLNYLEAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKS 54
+L+ + LLE + P++ L AIE + F
Sbjct: 89 FYLWLDQNGQ-HLLEHIRTTKDLPNEDDLNQAIEAFKKTFVV 129
>d1s7oa_ a.4.13.3 (A:) Hypothetical protein SPy1201 {Streptococcus
pyogenes [TaxId: 1314]}
Length = 106
Score = 22.1 bits (47), Expect = 8.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 20 HRALELLEDYHSKLTDPSDKQLRSAIERVIR 50
R ++LE Y KL SD +RS I +
Sbjct: 54 KRTEKILETYEMKLHMYSDYVVRSEIFDDMI 84
>d1x7fa1 b.62.1.2 (A:245-361) Outer surface protein, C-terminal
domain {Bacillus cereus [TaxId: 1396]}
Length = 117
Score = 22.0 bits (47), Expect = 9.5
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 25 LLEDYHSKLTDPSDKQLRSAIERVI 49
L++ H + D ++ +RS R
Sbjct: 20 TLQELHVRRGDITEYMVRSTEVRKK 44
>d2fq4a2 a.121.1.1 (A:78-192) Transcriptional regulator BC3163
{Bacillus cereus [TaxId: 1396]}
Length = 115
Score = 22.2 bits (47), Expect = 9.8
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 18 EAHRALELLEDYHSKLTDPSDKQLRSAIERVIR 50
E +L E+Y + P Q + +E+ I+
Sbjct: 32 EGQFDSKLAEEYRVRYFQPRRLQAKQLLEKGIK 64
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.142 0.409
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 305,938
Number of extensions: 11841
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 17
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.1 bits)