RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1886
(170 letters)
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 166 bits (422), Expect = 6e-50
Identities = 63/163 (38%), Positives = 97/163 (59%), Gaps = 4/163 (2%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPI-VARSSPEELHLCGYT 59
+ EI ++G+ + PTY+ LQ + L+ VIKET+RL+P VP+ + R ++ + GY
Sbjct: 298 LREEIDEVIGDK--RSPTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVIPGYL 355
Query: 60 IPAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKY 119
IP G + V +Y LHR P+ +PNPE+F+P+RFL R AF+PF G RNCLG +
Sbjct: 356 IPKGTLVIVNLYALHRDPEVFPNPEEFDPERFLDENGKFRKSFAFLPFGAGPRNCLGERL 415
Query: 120 AMLQMKVTVSTILRRYKVLVGDRCKTMEDIRFQFGLTLKTLPG 162
A ++MK+ ++T+L+ ++V + DI GL L P
Sbjct: 416 ARMEMKLFLATLLQNFEVEL-PPGTDPPDIDETPGLLLPPKPY 457
>gnl|CDD|225035 COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 411
Score = 114 bits (286), Expect = 1e-30
Identities = 53/162 (32%), Positives = 83/162 (51%), Gaps = 14/162 (8%)
Query: 9 LGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAV 68
L PD++ LL V++ET+RLYP VP+ R + E++ L GY IPAG + +
Sbjct: 263 LLRHPDQLAKLRAEPDRPLLEAVVEETLRLYPPVPLARRVATEDVELGGYRIPAGTVVLL 322
Query: 69 FIYGLHRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTV 128
I +R P+ +P+P++F+P+RF NA +PF G CLG A L++KV +
Sbjct: 323 SIGAANRDPEVFPDPDEFDPERF---------NNAHLPFGGGPHRCLGAALARLELKVAL 373
Query: 129 STILRRYKVLVGDRCKTMEDIRFQFGLTLKTLPGNDIKLEPR 170
+ +LRR+ +L+ E TL G + + R
Sbjct: 374 AELLRRFPLLLLA-----EPPPLVRRPTLVPRGGERLPVRRR 410
>gnl|CDD|178524 PLN02936, PLN02936, epsilon-ring hydroxylase.
Length = 489
Score = 108 bits (272), Expect = 2e-28
Identities = 59/174 (33%), Positives = 96/174 (55%), Gaps = 17/174 (9%)
Query: 4 EIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPIVARSSPEELHLCG-YTIPA 62
E+ +L + PTYE +++L L R I E+MRLYP P++ R + E L G Y + A
Sbjct: 318 ELDRVLQ---GRPPTYEDIKELKYLTRCINESMRLYPHPPVLIRRAQVEDVLPGGYKVNA 374
Query: 63 GVTIAVFIYGLHRHPQHWPNPEQFNPDRF-----LPSESSKRHPNAFMPFSLGARNCLGY 117
G I + +Y +HR P+ W E+F P+RF +P+E++ ++PFS G R C+G
Sbjct: 375 GQDIMISVYNIHRSPEVWERAEEFVPERFDLDGPVPNETNTDF--RYIPFSGGPRKCVGD 432
Query: 118 KYAMLQMKVTVSTILRRYKV-LVGDRCKTMEDIRFQFGLTLKTLPGNDIKLEPR 170
++A+L+ V ++ +L+R + LV D +DI G T+ T G + + R
Sbjct: 433 QFALLEAIVALAVLLQRLDLELVPD-----QDIVMTTGATIHTTNGLYMTVSRR 481
>gnl|CDD|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional.
Length = 482
Score = 106 bits (267), Expect = 1e-27
Identities = 60/172 (34%), Positives = 93/172 (54%), Gaps = 11/172 (6%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPI-VARSSPEELHLC-GY 58
YNEI++ + N +KV Q +IKET+R P P + RS+ ++ + G+
Sbjct: 320 AYNEIKSTV-NGRNKV-LLSDRQSTPYTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGH 377
Query: 59 TIPAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYK 118
IP I + Y L R+ +++ NPEQF+P RFL +S +AFMPFS+G RNC+G +
Sbjct: 378 FIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNPDS----NDAFMPFSIGPRNCVGQQ 433
Query: 119 YAMLQMKVTVSTILRRYKVLVGDRCKTMEDIRFQFGLTLKTLPGNDIKLEPR 170
+A ++ + S I+ +K+ D K E ++GLTLK + LE R
Sbjct: 434 FAQDELYLAFSNIILNFKLKSIDGKKIDETE--EYGLTLKPNKFK-VLLEKR 482
>gnl|CDD|215164 PLN02290, PLN02290, cytokinin trans-hydroxylase.
Length = 516
Score = 101 bits (254), Expect = 1e-25
Identities = 46/143 (32%), Positives = 81/143 (56%), Gaps = 8/143 (5%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTI 60
V E+ + G + P+ + L KL LLN VI E++RLYP ++ R + E++ L I
Sbjct: 353 VRAEVAEVCGGET---PSVDHLSKLTLLNMVINESLRLYPPATLLPRMAFEDIKLGDLHI 409
Query: 61 PAGVTIAVFIYGLHRHPQHW-PNPEQFNPDRFLP-SESSKRHPNAFMPFSLGARNCLGYK 118
P G++I + + +H + W + +FNPDRF + RH F+PF+ G RNC+G
Sbjct: 410 PKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRPFAPGRH---FIPFAAGPRNCIGQA 466
Query: 119 YAMLQMKVTVSTILRRYKVLVGD 141
+AM++ K+ ++ ++ ++ + D
Sbjct: 467 FAMMEAKIILAMLISKFSFTISD 489
>gnl|CDD|215393 PLN02738, PLN02738, carotene beta-ring hydroxylase.
Length = 633
Score = 101 bits (253), Expect = 1e-25
Identities = 50/138 (36%), Positives = 82/138 (59%), Gaps = 10/138 (7%)
Query: 3 NEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPA 62
E+ ++LG D+ PT E ++KL RVI E++RLYP P++ R S E L GY I
Sbjct: 430 EEVDSVLG---DRFPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLENDMLGGYPIKR 486
Query: 63 GVTIAVFIYGLHRHPQHWPNPEQFNPDRFL-----PSESSKRHPNAFMPFSLGARNCLGY 117
G I + ++ LHR P+HW + E+FNP+R+ P+E+++ +++PF G R C+G
Sbjct: 487 GEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNF--SYLPFGGGPRKCVGD 544
Query: 118 KYAMLQMKVTVSTILRRY 135
+A + V + ++RR+
Sbjct: 545 MFASFENVVATAMLVRRF 562
>gnl|CDD|215354 PLN02655, PLN02655, ent-kaurene oxidase.
Length = 466
Score = 100 bits (250), Expect = 3e-25
Identities = 49/122 (40%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 2 YNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPIV-ARSSPEELHLCGYTI 60
Y EI+ + G D+ T E L L LN V ET+R Y VP++ R E+ L GY I
Sbjct: 300 YREIREVCG---DERVTEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHEDTTLGGYDI 356
Query: 61 PAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYA 120
PAG IA+ IYG + + W NPE+++P+RFL + M F G R C G A
Sbjct: 357 PAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYESADMYKTMAFGAGKRVCAGSLQA 416
Query: 121 ML 122
ML
Sbjct: 417 ML 418
>gnl|CDD|215371 PLN02687, PLN02687, flavonoid 3'-monooxygenase.
Length = 517
Score = 86.4 bits (214), Expect = 2e-20
Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 15/165 (9%)
Query: 4 EIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPI-VARSSPEELHLCGYTIPA 62
E+ A++G D ++ + L +L L VIKET RL+P+ P+ + R + EE + GY IP
Sbjct: 337 ELDAVVGRD--RLVSESDLPQLTYLQAVIKETFRLHPSTPLSLPRMAAEECEINGYHIPK 394
Query: 63 GVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKRHPNA--------FMPFSLGARNC 114
G T+ V ++ + R P+ WP+P +F PDRFLP H +PF G R C
Sbjct: 395 GATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGE---HAGVDVKGSDFELIPFGAGRRIC 451
Query: 115 LGYKYAMLQMKVTVSTILRRYK-VLVGDRCKTMEDIRFQFGLTLK 158
G + + + + +T++ + L + ++ +GLTL+
Sbjct: 452 AGLSWGLRMVTLLTATLVHAFDWELADGQTPDKLNMEEAYGLTLQ 496
>gnl|CDD|215221 PLN02394, PLN02394, trans-cinnamate 4-monooxygenase.
Length = 503
Score = 86.3 bits (214), Expect = 2e-20
Identities = 48/142 (33%), Positives = 80/142 (56%), Gaps = 6/142 (4%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPI-VARSSPEELHLCGYT 59
+ +E+ +LG P T KL L V+KET+RL+ A+P+ V + E+ L GY
Sbjct: 330 LRDELDTVLG--PGNQVTEPDTHKLPYLQAVVKETLRLHMAIPLLVPHMNLEDAKLGGYD 387
Query: 60 IPAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESS-KRHPNAF--MPFSLGARNCLG 116
IPA I V + L +P+ W NPE+F P+RFL E+ + + N F +PF +G R+C G
Sbjct: 388 IPAESKILVNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPG 447
Query: 117 YKYAMLQMKVTVSTILRRYKVL 138
A+ + + + +++ +++L
Sbjct: 448 IILALPILGIVLGRLVQNFELL 469
>gnl|CDD|215171 PLN02302, PLN02302, ent-kaurenoic acid oxidase.
Length = 490
Score = 82.1 bits (203), Expect = 8e-19
Identities = 37/120 (30%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 18 TYEQLQKLDLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHRHP 77
T + ++K++ L++VI ET+RL V R + ++ + GYTIP G + + +H P
Sbjct: 343 TLKDVRKMEYLSQVIDETLRLINISLTVFREAKTDVEVNGYTIPKGWKVLAWFRQVHMDP 402
Query: 78 QHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRYKV 137
+ +PNP++F+P R+ ++ F+PF LG+R C G A L++ + + L Y++
Sbjct: 403 EVYPNPKEFDPSRW---DNYTPKAGTFLPFGLGSRLCPGNDLAKLEISIFLHHFLLGYRL 459
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase.
Length = 516
Score = 77.2 bits (190), Expect = 4e-17
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 3/138 (2%)
Query: 22 LQKLDLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHRHPQHWP 81
L+KL L +KET+RL+P +P++ + E+ + GY IP + + + + R W
Sbjct: 360 LEKLTYLKCTLKETLRLHPPIPLLLHETAEDAEVAGYFIPKRSRVMINAWAIGRDKNSWE 419
Query: 82 NPEQFNPDRFLPSESS--KRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRYKVLV 139
+P+ F P RFL K F+PF G R+C G + + + + V+ +L + +
Sbjct: 420 DPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWEL 479
Query: 140 GDRCKTME-DIRFQFGLT 156
D K E D+ FGLT
Sbjct: 480 PDGMKPSELDMNDVFGLT 497
>gnl|CDD|177847 PLN02196, PLN02196, abscisic acid 8'-hydroxylase.
Length = 463
Score = 75.7 bits (186), Expect = 1e-16
Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 5/137 (3%)
Query: 1 VYNEIQAILGNDPD-KVPTYEQLQKLDLLNRVIKETMRLYPAVPIVARSSPEELHLCGYT 59
V E AI + + + T+E +K+ L +RVI+ET+R+ + R + E++ GY
Sbjct: 301 VTEEQMAIRKDKEEGESLTWEDTKKMPLTSRVIQETLRVASILSFTFREAVEDVEYEGYL 360
Query: 60 IPAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKY 119
IP G + +H + +P +F+P RF E + + PN FMPF G +C G +
Sbjct: 361 IPKGWKVLPLFRNIHHSADIFSDPGKFDPSRF---EVAPK-PNTFMPFGNGTHSCPGNEL 416
Query: 120 AMLQMKVTVSTILRRYK 136
A L++ V + + +Y+
Sbjct: 417 AKLEISVLIHHLTTKYR 433
>gnl|CDD|215583 PLN03112, PLN03112, cytochrome P450 family protein; Provisional.
Length = 514
Score = 75.6 bits (186), Expect = 1e-16
Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 8/123 (6%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVP-IVARSSPEELHLCGYT 59
+ E+ +++G +++ L L+ L V++ET R++PA P ++ S + GY
Sbjct: 333 IQEELDSVVG--RNRMVQESDLVHLNYLRCVVRETFRMHPAGPFLIPHESLRATTINGYY 390
Query: 60 IPAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSK---RHPNAF--MPFSLGARNC 114
IPA + + +GL R+ + W + E+F P+R P+E S+ H F +PFS G R C
Sbjct: 391 IPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKC 450
Query: 115 LGY 117
G
Sbjct: 451 PGA 453
>gnl|CDD|215086 PLN00168, PLN00168, Cytochrome P450; Provisional.
Length = 519
Score = 74.2 bits (182), Expect = 5e-16
Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 14/162 (8%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPIVARSSP-EELHLCGYT 59
+++EI+A G+D ++V + E + K+ L V+ E +R +P V E++ + GY
Sbjct: 343 LHDEIKAKTGDDQEEV-SEEDVHKMPYLKAVVLEGLRKHPPAHFVLPHKAAEDMEVGGYL 401
Query: 60 IPAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPS--------ESSKRHPNAFMPFSLGA 111
IP G T+ + + R + W P +F P+RFL S+ MPF +G
Sbjct: 402 IPKGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSRE--IRMMPFGVGR 459
Query: 112 RNCLGYKYAMLQMKVTVSTILRRY--KVLVGDRCKTMEDIRF 151
R C G AML ++ V+ ++R + K + GD E F
Sbjct: 460 RICAGLGIAMLHLEYFVANMVREFEWKEVPGDEVDFAEKREF 501
>gnl|CDD|177725 PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H);
Provisional.
Length = 504
Score = 74.1 bits (182), Expect = 5e-16
Identities = 46/144 (31%), Positives = 75/144 (52%), Gaps = 11/144 (7%)
Query: 22 LQKLDLLNRVIKETMRLYPAVPI-VARSSPEELHLCGYTIPAGVTIAVFIYGLHRHPQHW 80
L KL L + KE+ R +P+ P+ + R S + + GY IP ++V I+ + R P W
Sbjct: 345 LPKLPYLQAICKESFRKHPSTPLNLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRDPDVW 404
Query: 81 PNPEQFNPDRFLPSESSKRHP--NAF--MPFSLGARNCLGYKYAMLQMKVTVSTILRRY- 135
NPE+F P+RFL +++K P N F +PF G R C G + ++ ++ + T++ +
Sbjct: 405 ENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVEYILGTLVHSFD 464
Query: 136 -KVLVGDRCKTMEDIRFQFGLTLK 158
K+ G E FGL L+
Sbjct: 465 WKLPDGVELNMDE----AFGLALQ 484
>gnl|CDD|178550 PLN02966, PLN02966, cytochrome P450 83A1.
Length = 502
Score = 74.0 bits (181), Expect = 6e-16
Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 4/155 (2%)
Query: 18 TYEQLQKLDLLNRVIKETMRLYPAVPI-VARSSPEELHLCGYTIPAGVTIAVFIYGLHRH 76
T + ++ L ++KET+R+ P +P+ + R+ ++ + GY IPAG T+ V + + R
Sbjct: 343 TEDDVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPAGTTVNVNAWAVSRD 402
Query: 77 PQHW-PNPEQFNPDRFLPSESSKRHPN-AFMPFSLGARNCLGYKYAMLQMKVTVSTILRR 134
+ W PNP++F P+RFL E + + F+PF G R C G + ++V + +L
Sbjct: 403 EKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVPYANLLLN 462
Query: 135 YKVLVGDRCKTMEDIRFQFGLTLKTLPGNDIKLEP 169
+ + + K +DI L +KL P
Sbjct: 463 FNFKLPNGMKP-DDINMDVMTGLAMHKSQHLKLVP 496
>gnl|CDD|215235 PLN02426, PLN02426, cytochrome P450, family 94, subfamily C
protein.
Length = 502
Score = 72.4 bits (178), Expect = 2e-15
Identities = 42/160 (26%), Positives = 80/160 (50%), Gaps = 14/160 (8%)
Query: 4 EIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPIVARSSPEELHLC-GYTIPA 62
E ++G + + ++E+++++ L+ + E+MRL+P V ++ + E+ L G +
Sbjct: 333 EADRVMGPN-QEAASFEEMKEMHYLHAALYESMRLFPPVQFDSKFAAEDDVLPDGTFVAK 391
Query: 63 GVTIAVFIYGLHRHPQHW-PNPEQFNPDRFLP-----SESSKRHPNAFMPFSLGARNCLG 116
G + Y + R + W P+ +F P+R+L E+ ++P F G R CLG
Sbjct: 392 GTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGVFVPENPFKYP----VFQAGLRVCLG 447
Query: 117 YKYAMLQMKVTVSTILRRYKVLVGDRCKTMEDIRFQFGLT 156
+ A+++MK ++RR+ + V R RF GLT
Sbjct: 448 KEMALMEMKSVAVAVVRRFDIEVVGRSNRAP--RFAPGLT 485
>gnl|CDD|177826 PLN02169, PLN02169, fatty acid (omega-1)-hydroxylase/midchain
alkane hydroxylase.
Length = 500
Score = 71.2 bits (174), Expect = 5e-15
Identities = 49/145 (33%), Positives = 75/145 (51%), Gaps = 10/145 (6%)
Query: 20 EQLQKLDLLNRVIKETMRLYPAVPIVARS--SPEELHLCGYTIPAGVTIAVFIYGLHRHP 77
E L+KL L+ + E+MRLYP +P ++ P+ L G+ + A I + IY L R
Sbjct: 349 EDLEKLVYLHAALSESMRLYPPLPFNHKAPAKPDVLP-SGHKVDAESKIVICIYALGRMR 407
Query: 78 QHW-PNPEQFNPDRFLPSESSKRHPNA--FMPFSLGARNCLGYKYAMLQMKVTVSTILRR 134
W + F P+R++ RH + FM F+ G R CLG A+LQMK+ I++
Sbjct: 408 SVWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALEIIKN 467
Query: 135 Y--KVLVGDRCKTMEDI--RFQFGL 155
Y KV+ G + + + I R + GL
Sbjct: 468 YDFKVIEGHKIEAIPSILLRMKHGL 492
>gnl|CDD|215627 PLN03195, PLN03195, fatty acid omega-hydroxylase; Provisional.
Length = 516
Score = 69.8 bits (171), Expect = 2e-14
Identities = 44/122 (36%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 18 TYEQLQKLDLLNRVIKETMRLYPAVPIVARSSPEELHLC-GYTIPAGVTIAVFIYGLHRH 76
TY+ L KL L+ VI ET+RLYPAVP + E+ L G + AG + Y + R
Sbjct: 364 TYDSLGKLQYLHAVITETLRLYPAVPQDPKGILEDDVLPDGTKVKAGGMVTYVPYSMGRM 423
Query: 77 PQHW-PNPEQFNPDRFLPSES-SKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRR 134
+W P+ F P+R++ P F F G R CLG A LQMK+ ++ + R
Sbjct: 424 EYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMALALLCRF 483
Query: 135 YK 136
+K
Sbjct: 484 FK 485
>gnl|CDD|215276 PLN02500, PLN02500, cytochrome P450 90B1.
Length = 490
Score = 66.0 bits (161), Expect = 4e-13
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 18 TYEQLQKLDLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHRHP 77
+E +K++ VI ET+RL V + R + +++ GY IP+G + I +H
Sbjct: 336 NWEDYKKMEFTQCVINETLRLGNVVRFLHRKALKDVRYKGYDIPSGWKVLPVIAAVHLDS 395
Query: 78 QHWPNPEQFNPDRFL-------PSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKV 126
+ P+ FNP R+ S SS N FMPF G R C G + A L+M V
Sbjct: 396 SLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKLEMAV 451
>gnl|CDD|166628 PLN02987, PLN02987, Cytochrome P450, family 90, subfamily A.
Length = 472
Score = 59.2 bits (143), Expect = 7e-11
Identities = 28/105 (26%), Positives = 53/105 (50%)
Query: 31 VIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHRHPQHWPNPEQFNPDR 90
V+ ET+R+ + + R + ++ + GYTIP G + +H +++ + FNP R
Sbjct: 335 VVNETLRVANIIGGIFRRAMTDIEVKGYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWR 394
Query: 91 FLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRY 135
+ + + N F PF G R C GY+ A + + V + ++ R+
Sbjct: 395 WQSNSGTTVPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTRF 439
>gnl|CDD|178773 PLN03234, PLN03234, cytochrome P450 83B1; Provisional.
Length = 499
Score = 57.8 bits (139), Expect = 2e-10
Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 7/138 (5%)
Query: 3 NEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPIVA-RSSPEELHLCGYTIP 61
+E++ ++G+ + E + L L VIKE++RL P +PI+ R + + + GY IP
Sbjct: 327 DEVRNVIGDK--GYVSEEDIPNLPYLKAVIKESLRLEPVIPILLHRETIADAKIGGYDIP 384
Query: 62 AGVTIAVFIYGLHRHPQHW-PNPEQFNPDRFLPSESS---KRHPNAFMPFSLGARNCLGY 117
A I V + + R W NP +F P+RF+ K +PF G R C
Sbjct: 385 AKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCPAM 444
Query: 118 KYAMLQMKVTVSTILRRY 135
+ +++ + +L ++
Sbjct: 445 HLGIAMVEIPFANLLYKF 462
>gnl|CDD|178592 PLN03018, PLN03018, homomethionine N-hydroxylase.
Length = 534
Score = 57.7 bits (139), Expect = 2e-10
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 4 EIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAV----PIVARSSPEELHLCGYT 59
E+ ++G D ++ + L+ L +ET R++P+ P VAR ++ L GY
Sbjct: 354 ELDEVVGKD--RLVQESDIPNLNYLKACCRETFRIHPSAHYVPPHVAR---QDTTLGGYF 408
Query: 60 IPAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKRHPN------AFMPFSLGARN 113
IP G I V GL R+P+ W +P + P+R L + + F+ FS G R
Sbjct: 409 IPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRG 468
Query: 114 CLGYKYAMLQMKVTVSTILRRY 135
C+G K + M + ++ L+ +
Sbjct: 469 CVGVKVGTIMMVMMLARFLQGF 490
>gnl|CDD|178373 PLN02774, PLN02774, brassinosteroid-6-oxidase.
Length = 463
Score = 56.3 bits (136), Expect = 7e-10
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
Query: 13 PDKVPTYEQLQKLDLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYG 72
P+ + + + VI ET RL V V R + +++ L GY IP G I V+
Sbjct: 314 PEDPIDWNDYKSMRFTRAVIFETSRLATIVNGVLRKTTQDMELNGYVIPKGWRIYVYTRE 373
Query: 73 LHRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTIL 132
++ P +P+P FNP R+L + S N F F G R C G + ++++ + +
Sbjct: 374 INYDPFLYPDPMTFNPWRWL--DKSLESHNYFFLFGGGTRLCPGKELGIVEISTFLHYFV 431
Query: 133 RRYK 136
RY+
Sbjct: 432 TRYR 435
>gnl|CDD|166612 PLN02971, PLN02971, tryptophan N-hydroxylase.
Length = 543
Score = 53.1 bits (127), Expect = 8e-09
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 4 EIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPA----VPIVARSSPEELHLCGYT 59
EI ++G + + + KL+ + +I+E RL+P +P VA S + + GY
Sbjct: 367 EIDRVVGKE--RFVQESDIPKLNYVKAIIREAFRLHPVAAFNLPHVALS---DTTVAGYH 421
Query: 60 IPAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESS---KRHPNAFMPFSLGARNC 114
IP G + + YGL R+P+ W +P F P+R L S + F+ FS G R C
Sbjct: 422 IPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGC 479
>gnl|CDD|215600 PLN03141, PLN03141, 3-epi-6-deoxocathasterone 23-monooxygenase;
Provisional.
Length = 452
Score = 46.7 bits (111), Expect = 1e-06
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 25 LDLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHRHPQHWPNPE 84
L VI ET+R+ + V R + +++ + GY IP G + + +H +++ NP
Sbjct: 314 LPFTQNVITETLRMGNIINGVMRKAMKDVEIKGYLIPKGWCVLAYFRSVHLDEENYDNPY 373
Query: 85 QFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRYK 136
QFNP R+ + + ++F PF G R C G A L+ + + ++ R++
Sbjct: 374 QFNPWRW---QEKDMNNSSFTPFGGGQRLCPGLDLARLEASIFLHHLVTRFR 422
>gnl|CDD|215350 PLN02648, PLN02648, allene oxide synthase.
Length = 480
Score = 40.3 bits (95), Expect = 2e-04
Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 14/146 (9%)
Query: 3 NEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPIV-ARSSPE---ELHLCGY 58
E+++ + V T+ L+K+ L+ V+ E +R+ P VP R+ + E H +
Sbjct: 312 EEVRSAVKAGGGGV-TFAALEKMPLVKSVVYEALRIEPPVPFQYGRAREDFVIESHDAAF 370
Query: 59 TIPAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSK--RH------PNAFMPFSLG 110
I G + + + R P+ + PE+F PDRF+ E K ++ P ++G
Sbjct: 371 EIKKGEMLFGYQPLVTRDPKVFDRPEEFVPDRFMGEEGEKLLKYVFWSNGRETESP-TVG 429
Query: 111 ARNCLGYKYAMLQMKVTVSTILRRYK 136
+ C G + +L ++ V+ + RY
Sbjct: 430 NKQCAGKDFVVLVARLFVAELFLRYD 455
>gnl|CDD|233677 TIGR01995, PTS-II-ABC-beta, PTS system, beta-glucoside-specific
IIABC component. This model represents a family of PTS
enzyme II proteins in which all three domains are found
in the same polypeptide chain and which appear to have a
broad specificity for beta-glucosides including salicin
(beta-D-glucose-1-salicylate) and arbutin
(Hydroquinone-O-beta-D-glucopyranoside). These are
distinct from the closely related sucrose-specific and
trehalose-specific PTS transporters.
Length = 610
Score = 28.9 bits (65), Expect = 1.5
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLY-PAVPIVA 46
VY + +LG D + K +LN++I ++ P +P +A
Sbjct: 70 VYQALMDVLGLDDQAE-DDDSKGKKSILNKLIDLISGVFTPLLPALA 115
>gnl|CDD|205932 pfam13758, Prefoldin_3, Prefoldin subunit. This family includes
prefoldin subunits that are not detected by pfam02996.
Length = 97
Score = 27.3 bits (61), Expect = 1.9
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 3 NEIQAILGNDPDKVPTYEQLQKLDLLNRVI 32
EI+ ILG T +Q+ +DL++R I
Sbjct: 48 KEIKEILGEKQGITRTRQQV--VDLISRRI 75
>gnl|CDD|226443 COG3933, COG3933, Transcriptional antiterminator [Transcription].
Length = 470
Score = 27.3 bits (61), Expect = 4.0
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 8/44 (18%)
Query: 54 HLCGYTIPAGVTIAVFIY--------GLHRHPQHWPNPEQFNPD 89
G + V I ++++ +P+ E+FN D
Sbjct: 383 SKLGVKVSNEVKIGLYVHLACAIERLVKGAKITEYPDEEEFNKD 426
>gnl|CDD|233383 TIGR01373, soxB, sarcosine oxidase, beta subunit family,
heterotetrameric form. This model describes the beta
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason. Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms [Energy metabolism, Amino acids and amines].
Length = 407
Score = 27.5 bits (61), Expect = 4.5
Identities = 26/111 (23%), Positives = 40/111 (36%), Gaps = 30/111 (27%)
Query: 8 ILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAV--------------------PIVAR 47
++G D +Y Q L L V+ + ++P + PI+ +
Sbjct: 292 VIGGGIDGYNSYAQRGNLPTLEHVLAAILEMFPILSRVRMLRSWGGIVDVTPDGSPIIGK 351
Query: 48 SSPEELHL-CGY------TIPAGVTIAVFIYGLHRHPQHWPNPEQFNPDRF 91
+ L+L CG+ PA T VF + L R H F DRF
Sbjct: 352 TPLPNLYLNCGWGTGGFKATPASGT--VFAHTLARGEPH-DINAPFTLDRF 399
>gnl|CDD|193067 pfam12536, DUF3734, Patatin phospholipase. This domain family is
found in bacteria, and is approximately 110 amino acids
in length. The family is found in association with
pfam01734. There are two completely conserved residues
(F and G) that may be functionally important. The
proteins in this family are frequently annotated as
patatin family phospholipases however there is little
accompanying literature to confirm this.
Length = 108
Score = 25.3 bits (56), Expect = 9.1
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 9/62 (14%)
Query: 18 TYEQLQKLDLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHRHP 77
Q+ +L I+E + P R+ P+ L Y VTI IY R
Sbjct: 13 RLRQIHRLR---HAIRELLERLPEE---LRNDPDVRELAEYGCGTRVTIVHLIY---RAK 63
Query: 78 QH 79
+
Sbjct: 64 PY 65
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.140 0.431
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,040,328
Number of extensions: 829560
Number of successful extensions: 807
Number of sequences better than 10.0: 1
Number of HSP's gapped: 771
Number of HSP's successfully gapped: 39
Length of query: 170
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 80
Effective length of database: 6,945,742
Effective search space: 555659360
Effective search space used: 555659360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.1 bits)