RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1886
(170 letters)
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 219 bits (559), Expect = 2e-70
Identities = 49/170 (28%), Positives = 84/170 (49%), Gaps = 8/170 (4%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTI 60
+ E+ ++G+ +E L +L L++V+KE++RLYP R EE + G +
Sbjct: 280 LQAEVDEVIGSKRY--LDFEDLGRLQYLSQVLKESLRLYPPAWGTFRLLEEETLIDGVRV 337
Query: 61 PAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYA 120
P + Y + R ++ +P FNPDRF P + + PFSLG R+C+G ++A
Sbjct: 338 PGNTPLLFSTYVMGRMDTYFEDPLTFNPDRFGPGA--PKPRFTYFPFSLGHRSCIGQQFA 395
Query: 121 MLQMKVTVSTILRRYKVLVGDRCKTMEDIRFQFGLTLKTLPGNDIKLEPR 170
+++KV ++ +L+R + + + Q TLK L L PR
Sbjct: 396 QMEVKVVMAKLLQRLEFRLVPG----QRFGLQEQATLKPLDPVLCTLRPR 441
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 207 bits (529), Expect = 1e-65
Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 12/173 (6%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTI 60
+ EIQ ++G + +QKL ++ I E+MR P V +V R + E+ + GY +
Sbjct: 332 IIKEIQTVIGERD---IKIDDIQKLKVMENFIYESMRYQPVVDLVMRKALEDDVIDGYPV 388
Query: 61 PAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYA 120
G I + I +HR + +P P +F + F F PF G R C G A
Sbjct: 389 KKGTNIILNIGRMHR-LEFFPKPNEFTLENFAK----NVPYRYFQPFGFGPRGCAGKYIA 443
Query: 121 MLQMKVTVSTILRRYKVLVGDRCKTMEDIRFQFGLTLKTLPGND---IKLEPR 170
M+ MK + T+LRR+ V +E I+ L+L + + PR
Sbjct: 444 MVMMKAILVTLLRRFHVKTLQGQ-CVESIQKIHDLSLHPDETKNMLEMIFTPR 495
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 202 bits (515), Expect = 8e-64
Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 9/163 (5%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTI 60
+ +E++A+ G P +E ++KL VI E MRL PAV ++ R + E L GY I
Sbjct: 300 IRDEVEAVTGGRP---VAFEDVRKLRHTGNVIVEAMRLRPAVWVLTRRAVAESELGGYRI 356
Query: 61 PAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYA 120
PAG I Y + R P+ + + +F+PDR+LP ++ A PFS G R C ++
Sbjct: 357 PAGADIIYSPYAIQRDPKSYDDNLEFDPDRWLPERAANVPKYAMKPFSAGKRKCPSDHFS 416
Query: 121 MLQMKVTVSTILRRYKV-LVGDRCKTMEDIRFQFGLTLKTLPG 162
M Q+ + + + +Y+ V + + G+TL+
Sbjct: 417 MAQLTLITAALATKYRFEQVAGS-----NDAVRVGITLRPHDL 454
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 196 bits (501), Expect = 7e-62
Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 5/170 (2%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTI 60
Y E + + G + + TY+QL+ L+LL+R IKET+RL P + I+ R + + GYTI
Sbjct: 289 CYLEQKTVCGENLPPL-TYDQLKDLNLLDRCIKETLRLRPPIMIMMRMARTPQTVAGYTI 347
Query: 61 PAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYA 120
P G + V R W FNPDR+L + A++PF G C+G +A
Sbjct: 348 PPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDNPASGEKFAYVPFGAGRHRCIGENFA 407
Query: 121 MLQMKVTVSTILRRYKVLVGDRCKTMEDIRFQFGLTLKTLPGNDIKLEPR 170
+Q+K ST+LR Y+ + D + + T I+ + R
Sbjct: 408 YVQIKTIWSTMLRLYEFDLIDG----YFPTVNYTTMIHTPENPVIRYKRR 453
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 190 bits (486), Expect = 1e-59
Identities = 40/172 (23%), Positives = 79/172 (45%), Gaps = 7/172 (4%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTI 60
V +E+ + G+ ++ L+++ L V+KET+RL+P + I+ R + E + G+ I
Sbjct: 282 VIDELDELYGDGRS--VSFHALRQIPQLENVLKETLRLHPPLIILMRVAKGEFEVQGHRI 339
Query: 61 PAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSES-SKRHPNAFMPFSLGARNCLGYKY 119
G +A +R P+ +P+P F P R+ + ++PF G C+G +
Sbjct: 340 HEGDLVAASPAISNRIPEDFPDPHDFVPARYEQPRQEDLLNRWTWIPFGAGRHRCVGAAF 399
Query: 120 AMLQMKVTVSTILRRYKV-LVGDRCKTMEDIRFQFGLTLKTLPGNDIKLEPR 170
A++Q+K S +LR Y+ + D + ++ ++ R
Sbjct: 400 AIMQIKAIFSVLLREYEFEMAQPPESYRNDHS---KMVVQLAQPAAVRYRRR 448
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 187 bits (477), Expect = 4e-58
Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 7/170 (4%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTI 60
+ E+Q++L ++ + P E L+ + L +KE+MRL P+VP R+ + L Y +
Sbjct: 320 LLQEVQSVLPDN--QTPRAEDLRNMPYLKACLKESMRLTPSVPFTTRTLDKPTVLGEYAL 377
Query: 61 PAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYA 120
P G + + L ++ + +F P+R+L E K +P A +PF +G R C+G + A
Sbjct: 378 PKGTVLTLNTQVLGSSEDNFEDSHKFRPERWLQKE-KKINPFAHLPFGIGKRMCIGRRLA 436
Query: 121 MLQMKVTVSTILRRYKVLVGDRCKTMEDIRFQFGLTLKTLPGNDIKLEPR 170
LQ+ + + I+++Y + E + L I PR
Sbjct: 437 ELQLHLALCWIIQKYDI----VATDNEPVEMLHLGILVPSRELPIAFRPR 482
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 186 bits (474), Expect = 6e-58
Identities = 36/171 (21%), Positives = 73/171 (42%), Gaps = 14/171 (8%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTI 60
+ EI+ ++ + ++ R +E++R P + ++ R ++ + Y +
Sbjct: 292 LRKEIEEFPA----QLNYNNVMDEMPFAERCARESIRRDPPLLMLMRKVMADVKVGSYVV 347
Query: 61 PAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYA 120
P G IA H + +P P +++P+R ++ AF+ F G C+G K+
Sbjct: 348 PKGDIIACSPLLSHHDEEAFPEPRRWDPERD------EKVEGAFIGFGAGVHKCIGQKFG 401
Query: 121 MLQMKVTVSTILRRYKV-LVGDRCKTMEDIRFQFGLTLKTLPGNDIKLEPR 170
+LQ+K ++T R Y L+ D + D + + T +K R
Sbjct: 402 LLQVKTILATAFRSYDFQLLRDE---VPDPDYHTMVVGPTASQCRVKYIRR 449
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 186 bits (474), Expect = 8e-58
Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 14/173 (8%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPIVARSSPEELHLCG-YT 59
E +L + P+Y+Q+++L + V+ E +RL+P P + + E+ L G Y
Sbjct: 290 AAEEAARVLVDPV---PSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYP 346
Query: 60 IPAGVTIAVFIYGLHRHPQHWP-NPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYK 118
+ G + V I LHR W + E+F P+RF +AF PF G R C+G +
Sbjct: 347 LEKGDELMVLIPQLHRDKTIWGDDVEEFRPERFENPS--AIPQHAFKPFGNGQRACIGQQ 404
Query: 119 YAMLQMKVTVSTILRRYKV-LVGDRCKTMEDIRFQFGLTLKTLPGNDIKLEPR 170
+A+ + + + +L+ + + ++ + LTLK +K + +
Sbjct: 405 FALHEATLVLGMMLKHFDFEDHTNY-----ELDIKETLTLKPEGFV-VKAKSK 451
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 181 bits (461), Expect = 1e-55
Identities = 49/170 (28%), Positives = 74/170 (43%), Gaps = 9/170 (5%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTI 60
+ E+ A + LQ + LL IKET+RL+P + R +L L Y I
Sbjct: 312 LRAEVLAARHQA--QGDMATMLQLVPLLKASIKETLRLHPISVTLQRYLVNDLVLRDYMI 369
Query: 61 PAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYA 120
PA + V IY L R P + +PE F+P R+L + + F G R CLG + A
Sbjct: 370 PAKTLVQVAIYALGREPTFFFDPENFDPTRWLS-KDKNITYFRNLGFGWGVRQCLGRRIA 428
Query: 121 MLQMKVTVSTILRRYKVLVGDRCKTMEDIRFQFGLTLKTLPGNDIKLEPR 170
L+M + + +L ++V + + D+ F L L P I
Sbjct: 429 ELEMTIFLINMLENFRV----EIQHLSDVGTTFNLILM--PEKPISFTFW 472
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 178 bits (454), Expect = 4e-55
Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 10/171 (5%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTI 60
V E + + T E L+K+ L++V++E +RL P V R ++ G+
Sbjct: 280 VRQEQNKLQLSQE---LTAETLKKMPYLDQVLQEVLRLIPPVGGGFRELIQDCQFQGFHF 336
Query: 61 PAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLP-SESSKRHPNAFMPFSLGARNCLGYKY 119
P G ++ I H P +P+PE+F+P+RF P ++ P A +PF G R CLG ++
Sbjct: 337 PKGWLVSYQISQTHADPDLYPDPEKFDPERFTPDGSATHNPPFAHVPFGGGLRECLGKEF 396
Query: 120 AMLQMKVTVSTILRRYKV-LVGDRCKTMEDIRFQFGLTLKTLPGNDIKLEP 169
A L+MK+ + +++++ L+ +++ + + +KL
Sbjct: 397 ARLEMKLFATRLIQQFDWTLLPG-----QNLELVVTPSPRPKDNLRVKLHS 442
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 178 bits (453), Expect = 1e-54
Identities = 51/170 (30%), Positives = 90/170 (52%), Gaps = 4/170 (2%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTI 60
+ EI A+L N PTY+ + +++ L+ V+ ET+RL+P + R +++ + G I
Sbjct: 309 LQEEIDAVLPNK--APPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFI 366
Query: 61 PAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYA 120
P GV + + Y LHR P++W PE+F P+RF P + PF G RNC+G ++A
Sbjct: 367 PKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFA 426
Query: 121 MLQMKVTVSTILRRYKVLVGDRCKTMEDIRFQFGLTLKTLPGNDIKLEPR 170
++ MK+ + +L+ + +T ++ G L+ +K+E R
Sbjct: 427 LMNMKLALIRVLQNFSFKPCK--ETQIPLKLSLGGLLQPEKPVVLKVESR 474
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 172 bits (436), Expect = 5e-52
Identities = 31/168 (18%), Positives = 70/168 (41%), Gaps = 14/168 (8%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPIVARSSPEEL----HLC 56
+ EI++++ ++ ++ T ++K++L V+ E +R P V + ++L H
Sbjct: 321 LAEEIRSVIKSNGGEL-TMGAIEKMELTKSVVYECLRFEPPVTAQYGRAKKDLVIESHDA 379
Query: 57 GYTIPAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPF-------SL 109
+ + AG + + R P+ + ++F P+RF+ E K + ++
Sbjct: 380 AFKVKAGEMLYGYQPLATRDPKIFDRADEFVPERFVGEEGEKLLRHVLWSNGPETETPTV 439
Query: 110 GARNCLGYKYAMLQMKVTVSTILRRYKVLVGDRCKTMEDIRFQFGLTL 157
G + C G + +L ++ V I RRY + + +
Sbjct: 440 GNKQCAGKDFVVLVARLFVIEIFRRYDSFDIE--VGTSPLGSSVNFSS 485
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 169 bits (430), Expect = 2e-51
Identities = 32/172 (18%), Positives = 66/172 (38%), Gaps = 18/172 (10%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPIVARSSPEEL----HLC 56
+ EI+ + + D T E ++++ L V+ E++R+ P VP + H
Sbjct: 303 LAEEIRGAIKSYGDGNVTLEAIEQMPLTKSVVYESLRIEPPVPPQYGKAKSNFTIESHDA 362
Query: 57 GYTIPAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLG------ 110
+ + G + + + P+ + PE++ PDRF+ ++ +S G
Sbjct: 363 TFEVKKGEMLFGYQPFATKDPKVFDRPEEYVPDRFVG---DGEALLKYVWWSNGPETESP 419
Query: 111 ---ARNCLGYKYAMLQMKVTVSTILRRYKVLVGDRCKTMEDIRFQFGLTLKT 159
+ C G + +L ++ V + RRY + + LT
Sbjct: 420 TVENKQCAGKDFVVLITRLFVIELFRRYDSFEIE--LGESPLGAAVTLTFLK 469
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 158 bits (403), Expect = 5e-48
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
Query: 31 VIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHRHPQHWPNPEQFNPDR 90
+E +RLYP I+ R L L +P G T+ + Y R +P+ E F P+R
Sbjct: 257 AFQEALRLYPPAWILTRRLERPLLLGEDRLPPGTTLVLSPYVTQRLH--FPDGEAFRPER 314
Query: 91 FLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRYKVLVGDRCKTMEDIR 150
FL + PF LG R CLG +A+L+ + + RR+++ R
Sbjct: 315 FLEERG--TPSGRYFPFGLGQRLCLGRDFALLEGPIVLRAFFRRFRLDPLP------FPR 366
Query: 151 FQFGLTLKTLPGNDIKLEPR 170
+TL+ P + PR
Sbjct: 367 VLAQVTLR--PEGGLPARPR 384
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 160 bits (408), Expect = 6e-48
Identities = 41/192 (21%), Positives = 73/192 (38%), Gaps = 22/192 (11%)
Query: 1 VYNEIQAILGND--------PDKVPTYEQLQKLDLLNRVIKETMRLYPAVPI---VARSS 49
E++ L N + +L L +L+ +IKE++RL A
Sbjct: 294 ATEEVKRTLENAGQKVSLEGNPICLSQAELNDLPVLDSIIKESLRLSSASLNIRTAKEDF 353
Query: 50 PEELHLCGYTIPAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKRH--------- 100
L Y I IA++ +H P+ +P+P F DR+L +
Sbjct: 354 TLHLEDGSYNIRKDDIIALYPQLMHLDPEIYPDPLTFKYDRYLDENGKTKTTFYCNGLKL 413
Query: 101 PNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRYKV-LVGDRCKTME-DIRFQFGLTLK 158
+MPF GA C G +A+ ++K + +L +++ L+ + K D L
Sbjct: 414 KYYYMPFGSGATICPGRLFAIHEIKQFLILMLSYFELELIEGQAKCPPLDQSRAGLGILP 473
Query: 159 TLPGNDIKLEPR 170
L + K + +
Sbjct: 474 PLNDIEFKYKFK 485
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 153 bits (388), Expect = 5e-45
Identities = 41/189 (21%), Positives = 74/189 (39%), Gaps = 19/189 (10%)
Query: 1 VYNEIQAILGNDPDKVP-----TYEQLQKLDLLNRVIKETMRLYPAVPIV-ARSSPEELH 54
V E+++IL V + L +L+ V+ E++RL A I +
Sbjct: 299 VRGELESILWQAEQPVSQTTTLPQKVLDSTPVLDSVLSESLRLTAAPFITREVVVDLAMP 358
Query: 55 LC---GYTIPAGVTIAVF-IYGLHRHPQHWPNPEQFNPDRFLPSESS---------KRHP 101
+ + + G + +F R P+ + +PE F +RFL + S KR
Sbjct: 359 MADGREFNLRRGDRLLLFPFLSPQRDPEIYTDPEVFKYNRFLNPDGSEKKDFYKDGKRLK 418
Query: 102 NAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRYKVLVGDRCKTMEDIRFQFGLTLKTLP 161
N MP+ G +CLG YA+ +K V +L + + + + + P
Sbjct: 419 NYNMPWGAGHNHCLGRSYAVNSIKQFVFLVLVHLDLELINADVEIPEFDLSRYGFGLMQP 478
Query: 162 GNDIKLEPR 170
+D+ + R
Sbjct: 479 EHDVPVRYR 487
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 147 bits (372), Expect = 3e-43
Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 7/121 (5%)
Query: 20 EQLQKLDLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHRHPQH 79
+Q+ D ++E R YP P V + ++ G P G + + +YG +
Sbjct: 266 ALVQQPDYAELFVQEVRRFYPFFPAVVARASQDFEWEGMAFPEGRQVVLDLYGSNHDAAT 325
Query: 80 WPNPEQFNPDRFLPSESSKRHPNAFMPFSLG----ARNCLGYKYAMLQMKVTVSTILRRY 135
W +P++F P+RF F+P G C G + MKV ++
Sbjct: 326 WADPQEFRPERFRA---WDEDSFNFIPQGGGDHYLGHRCPGEWIVLAIMKVAAHLLVNAM 382
Query: 136 K 136
+
Sbjct: 383 R 383
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 144 bits (366), Expect = 2e-42
Identities = 26/139 (18%), Positives = 53/139 (38%), Gaps = 12/139 (8%)
Query: 9 LGNDPDKVPTYEQLQ--KLDLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTI 66
L P E L+ ++E R YP P + ++ G ++
Sbjct: 258 LHEHPK---YKEWLRSGNSREREMFVQEVRRYYPFGPFLGALVKKDFVWNNCEFKKGTSV 314
Query: 67 AVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLG----ARNCLGYKYAML 122
+ +YG + P+ W +P++F P+RF + + +P G C G +
Sbjct: 315 LLDLYGTNHDPRLWDHPDEFRPERFAE---REENLFDMIPQGGGHAEKGHRCPGEGITIE 371
Query: 123 QMKVTVSTILRRYKVLVGD 141
MK ++ ++ + + V +
Sbjct: 372 VMKASLDFLVHQIEYDVPE 390
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 132 bits (334), Expect = 3e-37
Identities = 44/186 (23%), Positives = 71/186 (38%), Gaps = 23/186 (12%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPIVARSSPEELHLC---- 56
V EIQ + E+ + + + V+ ET+RL A I R ++ +C
Sbjct: 290 VREEIQG-----GKHLRLEERQKNTPVFDSVLWETLRLTAAALIT-RDVTQDKKICLSNG 343
Query: 57 -GYTIPAGVTIAVF-IYGLHRHPQHWPNPEQFNPDRFLPSESS---------KRHPNAFM 105
Y + G + VF PQ PE F DRFL ++ + R +
Sbjct: 344 QEYHLRRGDRLCVFPFISPQMDPQIHQQPEMFQFDRFLNADRTEKKDFFKNGARVKYPSV 403
Query: 106 PFSLGARNCLGYKYAMLQMKVTVSTILRRYKV-LVGDRCKTMEDIRFQFGLTLKTLPGND 164
P+ C G +A+ +K V TIL R+ V L ++G + P D
Sbjct: 404 PWGTEDNLCPGRHFAVHAIKELVFTILTRFDVELCDKNATVPLVDPSRYGFGI-LQPAGD 462
Query: 165 IKLEPR 170
+++ R
Sbjct: 463 LEIRYR 468
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 113 bits (286), Expect = 2e-30
Identities = 38/175 (21%), Positives = 79/175 (45%), Gaps = 11/175 (6%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPI-VARSSPEELHLCGYT 59
+Y EI +G + PT +L LL I+E +RL P P+ + + + + +
Sbjct: 310 LYEEIDQNVG--FSRTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKANVDSSIGEFA 367
Query: 60 IPAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSE--SSKRHPNAFMPFSLGARNCLGY 117
+ G + + ++ LH + + W P+QF P+RFL +++PF G R+C+G
Sbjct: 368 VDKGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCIGE 427
Query: 118 KYAMLQMKVTVSTILRRY--KVLVGDRCKTMEDIRFQFGLTLKTLPGNDIKLEPR 170
A ++ + ++ +L+R+ +V + + + +K++ R
Sbjct: 428 ILARQELFLIMAWLLQRFDLEVPDDG---QLPSLEGIPKVVFLIDSFK-VKIKVR 478
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 113 bits (285), Expect = 3e-30
Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 5/171 (2%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPI-VARSSPEELHLCGYT 59
V EI ++G + P + VI E R VP+ V + ++ + G+
Sbjct: 309 VQQEIDDVIG--QVRRPEMGDQAHMPYTTAVIHEVQRFGDIVPLGVTHMTSRDIEVQGFR 366
Query: 60 IPAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKY 119
IP G T+ + + + W P +F+P+ FL ++ P AF+PFS G R CLG
Sbjct: 367 IPKGTTLITNLSSVLKDEAVWEKPFRFHPEHFLDAQGHFVKPEAFLPFSAGRRACLGEPL 426
Query: 120 AMLQMKVTVSTILRRYKVLVGDRCKTMEDIRFQFGLTLKTLPGNDIKLEPR 170
A +++ + +++L+ + V F + P + PR
Sbjct: 427 ARMELFLFFTSLLQHFSFSVPTGQPRP-SHHGVFAFLVSPSPYE-LCAVPR 475
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 113 bits (284), Expect = 4e-30
Identities = 53/171 (30%), Positives = 93/171 (54%), Gaps = 6/171 (3%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPI-VARSSPEELHLCGYT 59
V EI I+G P+ P+++ K+ V+ E +R VP+ + ++ E+ + GY+
Sbjct: 310 VQKEIDLIMG--PNGKPSWDDKCKMPYTEAVLHEVLRFCNIVPLGIFHATSEDAVVRGYS 367
Query: 60 IPAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKY 119
IP G T+ +Y +H ++W +PE F+P+RFL S A +PFSLG R+CLG
Sbjct: 368 IPKGTTVITNLYSVHFDEKYWRDPEVFHPERFLDSSGYFAKKEALVPFSLGRRHCLGEHL 427
Query: 120 AMLQMKVTVSTILRRYKVLVGDRCKTMEDIRFQFGLTLKTLPGNDIKLEPR 170
A ++M + + +L+R+ + + + D++ + G+TL+ P I E R
Sbjct: 428 ARMEMFLFFTALLQRFHLHFPH--ELVPDLKPRLGMTLQPQPYL-ICAERR 475
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 112 bits (283), Expect = 5e-30
Identities = 49/174 (28%), Positives = 79/174 (45%), Gaps = 10/174 (5%)
Query: 1 VYNEIQAILG-NDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPI-VARSSPEELHLCGY 58
+ E+ LG TY+ +L LLN I E +RL P VP+ + + + GY
Sbjct: 316 LQEELDRELGPGASCSRVTYKDRARLPLLNATIAEVLRLRPVVPLALPHRTTRPSSIFGY 375
Query: 59 TIPAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYK 118
IP G+ + + G H W P +F PDRFL ++ + + F GAR CLG
Sbjct: 376 DIPEGMVVIPNLQGAHLDETVWEQPHEFRPDRFLEPGAN----PSALAFGCGARVCLGES 431
Query: 119 YAMLQMKVTVSTILRRY--KVLVGDRCKTMEDIRFQFGLTLKTLPGNDIKLEPR 170
A L++ V ++ +L+ + ++ G+ LK P ++L+PR
Sbjct: 432 LARLELFVVLARLLQAFTLLPPPVGALPSL-QPDPYCGVNLKVQPFQ-VRLQPR 483
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 110 bits (278), Expect = 3e-29
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 8/173 (4%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPI-VARSSPEELHLCGYT 59
V E+ ++G D++P L + + E MR VP+ + ++ + GY
Sbjct: 316 VQAELDQVVG--RDRLPCMGDQPNLPYVLAFLYEAMRFSSFVPVTIPHATTANTSVLGYH 373
Query: 60 IPAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESS--KRHPNAFMPFSLGARNCLGY 117
IP + V + ++ P WPNPE F+P RFL + K + M FS+G R C+G
Sbjct: 374 IPKDTVVFVNQWSVNHDPLKWPNPENFDPARFLDKDGLINKDLTSRVMIFSVGKRRCIGE 433
Query: 118 KYAMLQMKVTVSTILRRYKVLVGDRCKTMEDIRFQFGLTLKTLPGNDIKLEPR 170
+ + +Q+ + +S + + + F +GLT+K + + R
Sbjct: 434 ELSKMQLFLFISILAHQCDFRANP--NEPAKMNFSYGLTIKPKSFK-VNVTLR 483
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 108 bits (273), Expect = 1e-28
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 3/162 (1%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPI-VARSSPEELHLCGYT 59
V EI+ ++G ++ P + + + V+ E R +P + + ++ Y
Sbjct: 306 VQEEIERVIG--RNRSPCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHAVTCDIKFRNYL 363
Query: 60 IPAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKY 119
IP G TI + + + + +PNPE F+P FL + + FMPFS G R C+G
Sbjct: 364 IPKGTTILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAGKRICVGEAL 423
Query: 120 AMLQMKVTVSTILRRYKVLVGDRCKTMEDIRFQFGLTLKTLP 161
A +++ + +++IL+ + + K ++ G
Sbjct: 424 AGMELFLFLTSILQNFNLKSLVDPKNLDTTPVVNGFASVPPF 465
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 108 bits (272), Expect = 2e-28
Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 4/171 (2%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPI-VARSSPEELHLCGYT 59
V EI+ ++G + P + K+ + VI E RL +P V + ++ GY
Sbjct: 305 VQKEIEQVIG--SHRPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQFRGYV 362
Query: 60 IPAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKY 119
IP + + P+++ P FNP FL + + + FMPFSLG R CLG
Sbjct: 363 IPKNTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICLGEGI 422
Query: 120 AMLQMKVTVSTILRRYKVLVGDRCKTMEDIRFQFGLTLKTLPGNDIKLEPR 170
A ++ + +TIL+ + + + ++ + G+ I+ R
Sbjct: 423 ARTELFLFFTTILQNFSIASPVPPEDIDLTPRESGVGNVPPSYQ-IRFLAR 472
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 108 bits (272), Expect = 2e-28
Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 8/165 (4%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPI-VARSSPEELHLCGYT 59
+ E+ ++G ++ P +L L I ET R +P + S+ + L G+
Sbjct: 319 IQKELDTVIG--RERRPRLSDRPQLPYLEAFILETFRHSSFLPFTIPHSTTRDTTLNGFY 376
Query: 60 IPAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESS---KRHPNAFMPFSLGARNCLG 116
IP + V + ++ P+ W +P +F P+RFL ++ + K M F +G R C+G
Sbjct: 377 IPKKCCVFVNQWQVNHDPELWEDPSEFRPERFLTADGTAINKPLSEKMMLFGMGKRRCIG 436
Query: 117 YKYAMLQMKVTVSTILRRYKVLVGDRCKTMEDIRFQFGLTLKTLP 161
A ++ + ++ +L++ + V K D+ +GLT+K
Sbjct: 437 EVLAKWEIFLFLAILLQQLEFSVPPGVKV--DLTPIYGLTMKHAR 479
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 107 bits (270), Expect = 3e-28
Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 4/171 (2%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPI-VARSSPEELHLCGYT 59
V+ EI ++G ++ P +E K+ + VI E R +P+ +AR ++ +
Sbjct: 305 VHEEIDRVIG--KNRQPKFEDRAKMPYMEAVIHEIQRFGDVIPMSLARRVKKDTKFRDFF 362
Query: 60 IPAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKY 119
+P G + + + R P + NP+ FNP FL + + +AF+PFS+G RNC G
Sbjct: 363 LPKGTEVYPMLGSVLRDPSFFSNPQDFNPQHFLNEKGQFKKSDAFVPFSIGKRNCFGEGL 422
Query: 120 AMLQMKVTVSTILRRYKVLVGDRCKTMEDIRFQFGLTLKTLPGNDIKLEPR 170
A +++ + +T+++ +++ K ++ G + PR
Sbjct: 423 ARMELFLFFTTVMQNFRLKSSQSPKDIDVSPKHVGFATIPRNYT-MSFLPR 472
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 107 bits (270), Expect = 3e-28
Identities = 39/171 (22%), Positives = 76/171 (44%), Gaps = 4/171 (2%)
Query: 1 VYNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPI-VARSSPEELHLCGYT 59
++ EI ++G P ++P + Q++ ++ V+ E R VP + + + GY
Sbjct: 304 LHEEIDRVIG--PSRIPAIKDRQEMPYMDAVVHEIQRFITLVPSNLPHEATRDTIFRGYL 361
Query: 60 IPAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKY 119
IP G + + + Q +P+PE+F P+ FL ++ + F PFS G R C G
Sbjct: 362 IPKGTVVVPTLDSVLYDNQEFPDPEKFKPEHFLNENGKFKYSDYFKPFSTGKRVCAGEGL 421
Query: 120 AMLQMKVTVSTILRRYKVLVGDRCKTMEDIRFQFGLTLKTLPGNDIKLEPR 170
A +++ + + IL+ + + K ++ G + + PR
Sbjct: 422 ARMELFLLLCAILQHFNLKPLVDPKDIDLSPIHIGFGCIPPRYK-LCVIPR 471
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 76.2 bits (188), Expect = 5e-17
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHR 75
EQ+ + L+ R I ET+R P V ++ R ++ + G I + I +R
Sbjct: 290 EQMNDVLADRSLVPRAIAETLRYKPPVQLIPRQLSQDTVVGGMEIKKDTIVFCMIGAANR 349
Query: 76 HPQHWPNPEQFNPDR-FLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRR 134
P+ + P+ FN R L +S+ + F G NC+G +A ++++ + +L +
Sbjct: 350 DPEAFEQPDVFNIHREDLGIKSAFSGAARHLAFGSGIHNCVGTAFAKNEIEIVANIVLDK 409
Query: 135 Y 135
Sbjct: 410 M 410
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12;
1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Length = 418
Score = 71.5 bits (176), Expect = 2e-15
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHR 75
Q L + VI+ETMR P V +V+R + ++L + +T+P G T+ + + HR
Sbjct: 277 GQWAALAADGSRASAVIEETMRYDPPVQLVSRYAGDDLTIGTHTVPKGDTMLLLLAAAHR 336
Query: 76 HPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRY 135
P P++F+PD R + F GA CLG A L+ V + + R+
Sbjct: 337 DPTIVGAPDRFDPD---------RAQIRHLGFGKGAHFCLGAPLARLEATVALPALAARF 387
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein
complex, cytochrome P450 fold, carrier protein, 4-helix
bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus
subtilis} PDB: 3ejd_B* 3eje_B*
Length = 404
Score = 71.5 bits (176), Expect = 2e-15
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 13/120 (10%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHR 75
EQL KL DL+ ++E +R + AR + E++ +CG TI G + + + +R
Sbjct: 255 EQLLKLRENPDLIGTAVEECLRYESPTQMTARVASEDIDICGVTIRQGEQVYLLLGAANR 314
Query: 76 HPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRY 135
P + NP+ F+ R PN + F G CLG A L+ ++ ++T+L+R
Sbjct: 315 DPSIFTNPDVFDIT---------RSPNPHLSFGHGHHVCLGSSLARLEAQIAINTLLQRM 365
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX,
bioremediation, electron transport; HET: HEM; 1.49A
{Rhodococcus} PDB: 2wiv_A*
Length = 394
Score = 70.3 bits (173), Expect = 5e-15
Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 11/120 (9%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHR 75
E +I E +R+ P R E++ + G I AG I I +R
Sbjct: 254 EVFTAFRNDESARAAIINEMVRMDPPQLSFLRFPTEDVEIGGVLIEAGSPIRFMIGAANR 313
Query: 76 HPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRY 135
P+ + +P+ F+ R ++ R+ + F LG +C G + + + + RY
Sbjct: 314 DPEVFDDPDVFDHTR---PPAASRN----LSFGLGPHSCAGQIISRAEATTVFAVLAERY 366
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase,
metal-binding, AN biosynthesis, TIE-ROD mechanism of
action; HET: HEM; 1.59A {Saccharopolyspora erythraea}
PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Length = 411
Score = 69.6 bits (171), Expect = 1e-14
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 11/120 (9%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHR 75
+ +++E +R P P + R++ + + G IPA V + ++ +R
Sbjct: 262 AHWDAAAEDPGRIPAIVEEVLRYRPPFPQMQRTTTKATEVAGVPIPADVMVNTWVLSANR 321
Query: 76 HPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRY 135
+P++F+P R + F G CLG A L+ +V + I+ R+
Sbjct: 322 DSDAHDDPDRFDPSR---KSGGAAQ----LSFGHGVHFCLGAPLARLENRVALEEIIARF 374
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme,
oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB:
2z3u_A* 3a1l_A*
Length = 425
Score = 68.4 bits (168), Expect = 2e-14
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHR 75
+ L +L + ++E MR P V V R + E++ L + IP G + + +R
Sbjct: 275 DVLDELRTTPESTPAAVEELMRYDPPVQAVTRWAYEDIRLGDHDIPRGSRVVALLGSANR 334
Query: 76 HPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRY 135
P +P+P+ + R +++R + F LG CLG A + ++ + +L
Sbjct: 335 DPARFPDPDVLDVHR-----AAERQ----VGFGLGIHYCLGATLARAEAEIGLRALLDGI 385
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A
{Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A*
4dnz_A*
Length = 412
Score = 68.0 bits (167), Expect = 3e-14
Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHR 75
++ +L L +E +R V R++ ++ L G TI G + +F+ +R
Sbjct: 272 DEFARLRADPSLARNAFEEAVRFESPVQTFFRTTTRDVELAGATIGEGEKVLMFLGSANR 331
Query: 76 HPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRY 135
P+ W +P++++ R + + F G C+G A L+ +V ++ + R+
Sbjct: 332 DPRRWDDPDRYDIT---------RKTSGHVGFGSGVHMCVGQLVARLEGEVVLAALARKV 382
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin,
oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora
erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A*
1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Length = 404
Score = 67.6 bits (166), Expect = 4e-14
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHR 75
+QL + L ++E +R R + EE+ + G IP T+ V +R
Sbjct: 262 DQLALVRRDPSALPNAVEEILRYIAPPETTTRFAAEEVEIGGVAIPQYSTVLVANGAANR 321
Query: 76 HPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRY 135
P+ +P+P +F+ R ++ H + F G C+G A L+ +V + + R+
Sbjct: 322 DPKQFPDPHRFDVTR-----DTRGH----LSFGQGIHFCMGRPLAKLEGEVALRALFGRF 372
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase,
cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Length = 381
Score = 66.2 bits (162), Expect = 1e-13
Identities = 17/120 (14%), Positives = 41/120 (34%), Gaps = 13/120 (10%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHR 75
+++ R + E +RL+PA+ + R++ E+ L + I G + V + +R
Sbjct: 243 GLAERIADDPAAAQRTVAEVLRLHPALHLERRTATAEVRLGEHVIGEGEEVVVVVAAANR 302
Query: 76 HPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRY 135
P+ + P++ + D R + + + +
Sbjct: 303 DPEVFAEPDRLDVD---------RPDADRALSAHRGHPGRLEELVTALATAALRAAAKAL 353
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase,
metal-binding, oxidoreductase, hypothetical protein;
HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB:
2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Length = 414
Score = 66.2 bits (162), Expect = 2e-13
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 14/121 (11%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHR 75
+Q + L + + ++E +RL V +AR++ ++ + TIPAG + + +R
Sbjct: 271 DQRRLLLDDPEGIPDAVEELLRLTSPVQGLARTTTRDVTIGDTTIPAGRRVLLLYGSANR 330
Query: 76 HPQHW-PNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRR 134
+ + P+ + + R P + FS GA +CLG A +Q +V ++ +L R
Sbjct: 331 DERQYGPDAAELDVT---------RCPRNILTFSHGAHHCLGAAAARMQCRVALTELLAR 381
Query: 135 Y 135
Sbjct: 382 C 382
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET:
HEM; 2.30A {Streptomyces avermitilis}
Length = 408
Score = 65.7 bits (161), Expect = 2e-13
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHR 75
EQ+ L ++ V++E +R + R + E++ + G TI AG + V I ++R
Sbjct: 264 EQIDVLLRDPGAVSGVVEELLRFTSVSDHIVRMAKEDIEVGGATIKAGDAVLVSITLMNR 323
Query: 76 HPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRY 135
+ + NP+ F+ R +++ H + F G CLG A ++++ + + R
Sbjct: 324 DAKAYENPDIFDARR-----NARHH----VGFGHGIHQCLGQNLARAELEIALGGLFARI 374
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A*
1pkf_A*
Length = 419
Score = 65.4 bits (160), Expect = 3e-13
Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 14/121 (11%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPI-VARSSPEELHLCGYTIPAGVTIAVFIYGLH 74
E L+ + L+ + E +R + I R + ++L CG +I G + + I
Sbjct: 275 EALELVKAEPGLMRNALDEVLRFDNILRIGTVRFARQDLEYCGASIKKGEMVFLLIPSAL 334
Query: 75 RHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRR 134
R + P+ F+ R + + + G C G A L+ ++ V TI RR
Sbjct: 335 RDGTVFSRPDVFDVRR-----DTSAS----LAYGRGPHVCPGVSLARLEAEIAVGTIFRR 385
Query: 135 Y 135
+
Sbjct: 386 F 386
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta
binding protein; HET: HEM; 2.47A {Micromonospora
echinospora}
Length = 397
Score = 65.3 bits (160), Expect = 3e-13
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 13/119 (10%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHR 75
+QL L DLL + ++E +R P+V R ++ L G + + V +R
Sbjct: 254 DQLDLLRRRPDLLAQAVEECLRYDPSVQSNTRQLDVDVELRGRRLRRDDVVVVLAGAANR 313
Query: 76 HPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRR 134
P+ + P+ F+ +R M F G R CLG A Q++ V+ + R
Sbjct: 314 DPRRYDRPDDFDIER-----DPVPS----MSFGAGMRYCLGSYLARTQLRAAVAALARL 363
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A
{Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Length = 416
Score = 65.4 bits (160), Expect = 3e-13
Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 13/121 (10%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPI-VARSSPEELHLCGYTIPAGVTIAVFIYGLH 74
+Q K+ +L + ++E +R P +P+ R + E+ + G IP G + + + H
Sbjct: 274 DQWMKIKENPELAPQAVEEVLRWSPTLPVTATRVAAEDFEVNGVRIPTGTPVFMCAHVAH 333
Query: 75 RHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRR 134
R P+ + + ++F+ + + F G CLG A L++ V+ + R
Sbjct: 334 RDPRVFADADRFDITV--------KREAPSIAFGGGPHFCLGTALARLELTEAVAALATR 385
Query: 135 Y 135
Sbjct: 386 L 386
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM
EDO; 1.37A {Citrobacter braakii} PDB: 1t2b_A* 3bdz_A*
3be0_A*
Length = 398
Score = 64.6 bits (158), Expect = 6e-13
Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 14/120 (11%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHR 75
E ++L +L+ + E +R Y + R +E+ + T+ G T ++ R
Sbjct: 253 ELRRRLIAHPELIPNAVDELLRFYGPAMV-GRLVTQEVTVGDITMKPGQTAMLWFPIASR 311
Query: 76 HPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRY 135
+ +P+ + R PN + G CLG ++ +V ++ L+R
Sbjct: 312 DRSAFDSPDNIVIE---------RTPNRHLSLGHGIHRCLGAHLIRVEARVAITEFLKRI 362
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.50A {Sulfolobus
solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A*
1io9_A* 1io8_A*
Length = 368
Score = 64.1 bits (157), Expect = 7e-13
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 19 YEQLQKL---DLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHR 75
+ Q++ +L + I+E +R P V R + E + L TI G + V+I +R
Sbjct: 228 FNLWQRIREENLYLKAIEEALRYSPPVMRTVRKTKERVKLGDQTIEEGEYVRVWIASANR 287
Query: 76 HPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRY 135
+ + + E+F PD R+PN + F G CLG A L+ ++ + +R+
Sbjct: 288 DEEVFHDGEKFIPD---------RNPNPHLSFGSGIHLCLGAPLARLEARIAIEEFSKRF 338
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A
{Novosphingobium aromaticivorans} PDB: 3ofu_A*
Length = 396
Score = 63.8 bits (156), Expect = 1e-12
Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 12/120 (10%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHR 75
E + L DL+ E MR YP V V+R++ ++ G TI G + + +
Sbjct: 255 EDQRLLRERPDLIPAAADELMRRYPTV-AVSRNAVADVDADGVTIRKGDLVYLPSVLHNL 313
Query: 76 HPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRY 135
P + PE+ DR P +GA C+G A +++ V + L
Sbjct: 314 DPASFEAPEEVRFDR-------GLAPIRHTTMGVGAHRCVGAGLARMEVIVFLREWLGGM 366
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 63.4 bits (155), Expect = 1e-12
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 14/121 (11%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPI-VARSSPEELHLCGYTIPAGVTIAVFIYGLH 74
+QL L LL+ ++E +R V R E + L G IPAG T+ V + H
Sbjct: 284 DQLAALRADMTLLDGAVEEMLRYEGPVESATYRFPVEPVDLDGTVIPAGDTVLVVLADAH 343
Query: 75 RHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRR 134
R P+ +P+P +F+ R + H + F G C+G A L+ ++ V +L R
Sbjct: 344 RTPERFPDPHRFDIRR-----DTAGH----LAFGHGIHFCIGAPLARLEARIAVRALLER 394
Query: 135 Y 135
Sbjct: 395 C 395
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM;
1.60A {Mycobacterium tuberculosis}
Length = 398
Score = 63.0 bits (154), Expect = 2e-12
Identities = 34/160 (21%), Positives = 60/160 (37%), Gaps = 25/160 (15%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHR 75
+Q L LL I+E +R V + R + G + AG + + +
Sbjct: 251 DQWDLLQRDPSLLPGAIEEMLRWTAPVKNMCRVLTADTEFHGTALCAGEKMMLLFESANF 310
Query: 76 HPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRY 135
+ PE+F+ R+PN+ + F G CLG + A L++ + +LRR
Sbjct: 311 DEAVFCEPEKFDVQ---------RNPNSHLAFGFGTHFCLGNQLARLELSLMTERVLRRL 361
Query: 136 K--VLVGDRCKTMEDIRFQFGLT---LKTLPGNDIKLEPR 170
LV D + + L+++P + P
Sbjct: 362 PDLRLVADD----SVLPLRPANFVSGLESMP---VVFTPS 394
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron,
metal-binding, monooxygenase, oxidoreductase; HET: HEM;
1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Length = 367
Score = 63.0 bits (154), Expect = 2e-12
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 11/119 (9%)
Query: 19 YEQLQKL--DLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHRH 76
Y + + ++E +R P V R + E++ + I G + V+I +R
Sbjct: 229 YNSWDYVREKGALKAVEEALRFSPPVMRTIRVTKEKVKIRDQVIDEGELVRVWIASANRD 288
Query: 77 PQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRY 135
+ + +P+ F PD R PN + F G CLG A L+ ++ + +++
Sbjct: 289 EEVFKDPDSFIPD---------RTPNPHLSFGSGIHLCLGAPLARLEARIALEEFAKKF 338
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox
oxidoreductase; HET: HEM; 1.75A {Pseudonocardia
autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Length = 411
Score = 61.9 bits (151), Expect = 5e-12
Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 14/121 (11%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPI-VARSSPEELHLCGYTIPAGVTIAVFIYGLH 74
+Q + L L++ ++E +R V R + E++ G TIPAG + + + +
Sbjct: 257 DQRKLLAEDPSLISSAVEEFLRFDSPVSQAPIRFTAEDVTYSGVTIPAGEMVMLGLAAAN 316
Query: 75 RHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRR 134
R P P++ + R + + F G CLG + A L+ +V + +
Sbjct: 317 RDADWMPEPDRLDITR-----DASGG----VFFGHGIHFCLGAQLARLEGRVAIGRLFAD 367
Query: 135 Y 135
Sbjct: 368 R 368
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450
vancomycin, oxidoreductase; HET: HEM; 1.70A
{Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A*
1lgf_A*
Length = 398
Score = 61.9 bits (151), Expect = 5e-12
Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 14/121 (11%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPI-VARSSPEELHLCGYTIPAGVTIAVFIYGLH 74
EQ+ R + E +R R + E+L L G I G ++ + +
Sbjct: 257 EQIDAFRGDEQSAQRAVDELIRYLTVPYSPTPRIAREDLTLAGQEIKKGDSVICSLPAAN 316
Query: 75 RHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRR 134
R P P+ ++ + R H + F G +CLG A L+++ + + RR
Sbjct: 317 RDPALAPDVDRLDVTR-----EPIPH----VAFGHGVHHCLGAALARLELRTVFTELWRR 367
Query: 135 Y 135
+
Sbjct: 368 F 368
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105,
oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea
recticatena}
Length = 413
Score = 61.1 bits (149), Expect = 8e-12
Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIV-ARSSPEELHLCGYTIPAGVTIAVFIYGLH 74
EQL + ++E +R + V +R + E++ + G +I AG + V + +
Sbjct: 266 EQLTVVKANPGRTPMAVEELLRYFTIADGVTSRLATEDVEIGGVSIKAGEGVIVSMLSAN 325
Query: 75 RHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRR 134
P + +P + +R ++ H + F G CLG A +++++ T+ RR
Sbjct: 326 WDPAVFKDPAVLDVER-----GARHH----LAFGFGPHQCLGQNLARMELQIVFDTLFRR 376
Query: 135 Y 135
Sbjct: 377 I 377
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein,
vancomycin biosynthes carrier protein, oxidoreductase;
HET: HEM; 2.10A {Amycolatopsis balhimycina}
Length = 415
Score = 61.2 bits (149), Expect = 8e-12
Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHR 75
L L ++ V++E +R V R + ++ + G +P+G + ++ +R
Sbjct: 275 GLLTALRDGSADVDTVVEEVLRWTSPAMHVLRVTTADVTINGRDLPSGTPVVAWLPAANR 334
Query: 76 HPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRY 135
P + +P+ F P R PN + F G +CLG A +++ V + + R
Sbjct: 335 DPAEFDDPDTFLPG---------RKPNRHITFGHGMHHCLGSALARIELSVVLRVLAERV 385
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide
antibiotics, 12- and 14- carbon macrolactone
monooxygenase, heme; HET: HEM; 1.92A {Streptomyces
coelicolor} SCOP: a.104.1.1
Length = 411
Score = 61.1 bits (149), Expect = 9e-12
Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 14/122 (11%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPI-VARSSPEELHLCGYTIPAGVTIAVFIYGLH 74
EQ + + V++ET+R + R + E++ + IPAG + V L
Sbjct: 263 EQRALVLSGEAEWSAVVEETLRFSTPTSHVLIRFAAEDVPVGDRVIPAGDALIVSYGALG 322
Query: 75 RHP-QHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILR 133
R H P ++F+ R S RH + F G C G + ++ V + +
Sbjct: 323 RDERAHGPTADRFDLTR----TSGNRH----ISFGHGPHVCPGAALSRMEAGVALPALYA 374
Query: 134 RY 135
R+
Sbjct: 375 RF 376
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450
fold, structural genomics, PSI, protein structure
initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis}
SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A*
3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Length = 396
Score = 61.1 bits (149), Expect = 1e-11
Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 13/121 (10%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPI-VARSSPEELHLCGYTIPAGVTIAVFIYGLH 74
+ L +L+ ++E +R+ + + R + ++ + + G + V + G +
Sbjct: 254 QLRNLLHEKPELIPAGVEELLRINLSFADGLPRLATADIQVGDVLVRKGELVLVLLEGAN 313
Query: 75 RHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRR 134
P+H+PNP DR + H + F G C G ++ + +L++
Sbjct: 314 FDPEHFPNPGSIELDR----PNPTSH----LAFGRGQHFCPGSALGRRHAQIGIEALLKK 365
Query: 135 Y 135
Sbjct: 366 M 366
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A
{Streptomyces natalensis} PDB: 2x9p_A*
Length = 404
Score = 60.7 bits (148), Expect = 1e-11
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 15/122 (12%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIVA--RSSPEELHLCGYTIPAGVTIAVFIYGL 73
+Q D++ R ++E +R A V R + E++ G TI AG + +
Sbjct: 262 DQRAAALADPDVMARAVEEVLRTARAGGSVLPPRYASEDMEFGGVTIRAGDLVLFDLGLP 321
Query: 74 HRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILR 133
+ + + PE+F+ R + H + F G +C+G A L+++ + +
Sbjct: 322 NFDERAFTGPEEFDAAR-----TPNPH----LTFGHGIWHCIGAPLARLELRTMFTKLFT 372
Query: 134 RY 135
R
Sbjct: 373 RL 374
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin
biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A
{Amycolatopsis orientalis} SCOP: a.104.1.1
Length = 406
Score = 60.7 bits (148), Expect = 1e-11
Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 14/121 (11%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPI-VARSSPEELHLCGYTIPAGVTIAVFIYGLH 74
Q++ L + RV+ E +R V R + +++ + G I AG + I +
Sbjct: 266 GQIELLFESPEKAERVVNELVRYLSPVQAPNPRLAIKDVVIDGQLIKAGDYVLCSILMAN 325
Query: 75 RHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRR 134
R P+P+ + +R ++ + F G C+G A +++ T+ RR
Sbjct: 326 RDEALTPDPDVLDANR-----AAVSD----VGFGHGIHYCVGAALARSMLRMAYQTLWRR 376
Query: 135 Y 135
+
Sbjct: 377 F 377
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron,
metal-binding, oxidoreductase, substrate-soaking,
cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB:
1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A*
2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A*
1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Length = 415
Score = 60.4 bits (147), Expect = 1e-11
Identities = 26/148 (17%), Positives = 47/148 (31%), Gaps = 19/148 (12%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHR 75
E Q+L + + +E +R + V R + G + G I +
Sbjct: 270 EHRQELIERPERIPAACEELLRRFSLVAD-GRILTSDYEFHGVQLKKGDQILLPQMLSGL 328
Query: 76 HPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRY 135
+ P + R + F G+ CLG A ++ VT+ L R
Sbjct: 329 DERENACPMHVDFS---------RQKVSHTTFGHGSHLCLGQHLARREIIVTLKEWLTRI 379
Query: 136 KVLVGDRCKTMEDIRFQFGLT--LKTLP 161
I+ + G+ ++ LP
Sbjct: 380 PDF---SIAPGAQIQHKSGIVSGVQALP 404
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide,
filipi metal-binding, oxidoreductase-antibiotic complex;
HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB:
3e5j_A* 3e5k_A* 3e5l_A*
Length = 403
Score = 60.7 bits (148), Expect = 1e-11
Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 14/121 (11%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPI-VARSSPEELHLCGYTIPAGVTIAVFIYGLH 74
+QL L L+ ++E +R R + ++ L G I G + +
Sbjct: 258 DQLALLREDPSLVGNAVEELLRYLTIGQFGGERVATRDVELGGVRIAKGEQVVAHVLAAD 317
Query: 75 RHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRR 134
P PE+F+ R H + F GA C+G + A +++++ T+ RR
Sbjct: 318 FDPAFVEEPERFDITR-----RPAPH----LAFGFGAHQCIGQQLARIELQIVFETLFRR 368
Query: 135 Y 135
Sbjct: 369 L 369
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 60.7 bits (148), Expect = 1e-11
Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 14/121 (11%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPI-VARSSPEELHLCGYTIPAGVTIAVFIYGLH 74
EQ L L+ ++E +R I R + ++ + G I AG + V +
Sbjct: 265 EQYAALRADRSLVPGAVEELLRYLAIADIAGGRVATADIEVEGQLIRAGEGVIVVNSIAN 324
Query: 75 RHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRR 134
R + +P+ + R S++ H + F G CLG A L+++V ++ ++ R
Sbjct: 325 RDGTVYEDPDALDIHR-----SARHH----LAFGFGVHQCLGQNLARLELEVILNALMDR 375
Query: 135 Y 135
Sbjct: 376 V 376
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET:
HEM; 2.90A {Streptomyces coelicolor}
Length = 417
Score = 60.3 bits (147), Expect = 1e-11
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 14/121 (11%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIV-ARSSPEELHLCGYTIPAGVTIAVFIYGLH 74
E +L DL+ + E +R+ + R + E++ L G T+PA + + G +
Sbjct: 270 ELPAELRKDPDLMPAAVDELLRVLSVADSIPLRVAAEDIELSGRTVPADDGVIALLAGAN 329
Query: 75 RHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRR 134
P+ + +PE+ + R + H + F G C+G A L+++V + T+LRR
Sbjct: 330 HDPEQFDDPERVDFHR-----TDNHH----VAFGYGVHQCVGQHLARLELEVALETLLRR 380
Query: 135 Y 135
Sbjct: 381 V 381
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR,
atomic resolutio structural genomics/proteomics
initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum}
SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A*
1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A*
1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Length = 404
Score = 60.3 bits (147), Expect = 2e-11
Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPI-VARSSPEELHLCGYTIPAGVTIAVFIYGLH 74
+QL +L L + ++E R + A + + R++ E++ + + A I +
Sbjct: 261 DQLAQLKANPSLAPQFVEELCRYHTASALAIKRTAKEDVMIGDKLVRANEGIIASNQSAN 320
Query: 75 RHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRR 134
R + + NP++FN +R K P + F G C+ A ++ ST+ ++
Sbjct: 321 RDEEVFENPDEFNMNR-------KWPPQDPLGFGFGDHRCIAEHLAKAELTTVFSTLYQK 373
Query: 135 Y 135
+
Sbjct: 374 F 374
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2,
anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A
{Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A*
2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Length = 406
Score = 60.3 bits (147), Expect = 2e-11
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 15/122 (12%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIVA--RSSPEELHLCGYTIPAGVTIAVFIYGL 73
E ++L ++ R I E +R P V R + E++ + G I AG + V
Sbjct: 262 ELAERLRSEPEIRPRAIDELLRWIPHRNAVGLSRIALEDVEIKGVRIRAGDAVYVSYLAA 321
Query: 74 HRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILR 133
+R P+ +P+P++ + +R S H + F G C G A L+ ++ V +L
Sbjct: 322 NRDPEVFPDPDRIDFER-----SPNPH----VSFGFGPHYCPGGMLARLESELLVDAVLD 372
Query: 134 RY 135
R
Sbjct: 373 RV 374
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 60.0 bits (146), Expect = 2e-11
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 15/122 (12%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIVA--RSSPEELHLCGYTIPAGVTIAVFIYGL 73
E ++L +L+ ++E R P A R + E++ L G TI AG +
Sbjct: 275 ELRRQLLDRPELIPSAVEELTRWVPLGVGTAFPRYAVEDVTLRGVTIRAGEPVLASTGAA 334
Query: 74 HRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILR 133
+R +P+ ++ + DR + +H + F G +CLG A ++++V + +L+
Sbjct: 335 NRDQAQFPDADRIDVDR-----TPNQH----LGFGHGVHHCLGAPLARVELQVALEVLLQ 385
Query: 134 RY 135
R
Sbjct: 386 RL 387
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans} PDB: 3lxi_A*
Length = 421
Score = 60.0 bits (146), Expect = 2e-11
Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 14/120 (11%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHR 75
E + ++ L R ++E R + V AR ++ G + G I +
Sbjct: 277 ETVAEMRREPLKLQRGVEELFRRFAVVSD-ARYVVSDMEFHGTMLKEGDLILLPTALHGL 335
Query: 76 HPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRY 135
+H +P + R F+ G C G A L++ V + L R
Sbjct: 336 DDRHHDDPMTVDLS---------RRDVTHSTFAQGPHRCAGMHLARLEVTVMLQEWLARI 386
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase;
HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP:
a.104.1.1
Length = 408
Score = 60.0 bits (146), Expect = 2e-11
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIV-ARSSPEELHLC-GYTIPAGVTIAVFIYGL 73
+QL + V++ET+R PAV + R + ++ L G TI G I
Sbjct: 263 DQLALVRKGEVTWADVVEETLRHEPAVKHLPLRYAVTDIALPDGRTIARGEPILASYAAA 322
Query: 74 HRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILR 133
+RHP + + F+ R + K H + F G CLG A +++ + + ++
Sbjct: 323 NRHPDWHEDADTFDATR-----TVKEH----LAFGHGVHFCLGAPLARMEVTLALESLFG 373
Query: 134 RY 135
R+
Sbjct: 374 RF 375
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A
{Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Length = 411
Score = 60.0 bits (146), Expect = 2e-11
Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 15/122 (12%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIVA--RSSPEELHLCGYTIPAGVTIAVFIYGL 73
E + ++ + E +R V R + E++ + G I AG + V
Sbjct: 265 ELMARMRERPGARGTALDELLRWISHRTSVGLARIALEDVEVHGTRIAAGEPVYVSYLAA 324
Query: 74 HRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILR 133
+R P +P+P++ + DR H + + G C G A +Q ++ V T+L
Sbjct: 325 NRDPDVFPDPDRIDLDR-----DPNPH----LAYGNGHHFCTGAVLARMQTELLVDTLLE 375
Query: 134 RY 135
R
Sbjct: 376 RL 377
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent,
mono-oxygenases, oxidoreductase; HET: HEM; 2.00A
{Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Length = 417
Score = 58.1 bits (141), Expect = 1e-10
Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 14/120 (11%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHR 75
E + +L L R +E R +P V AR ++ G + G I +
Sbjct: 276 ELVAELRSDPLKLMRGAEEMFRRFPVVSE-ARMVAKDQEYKGVFLKRGDMILLPTALHGL 334
Query: 76 HPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRY 135
P P + + R + F G C G A +++ VT+ L+R
Sbjct: 335 DDAANPEPWKLDFS---------RRSISHSTFGGGPHRCAGMHLARMEVIVTLEEWLKRI 385
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase,
oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus}
PDB: 2rfc_A*
Length = 343
Score = 57.6 bits (140), Expect = 2e-10
Identities = 22/118 (18%), Positives = 47/118 (39%), Gaps = 12/118 (10%)
Query: 20 EQLQKL-DLLNRVIKETMRLYPAVPIVA-RSSPEELHLCGYTIPAGVTIAVFIYGLHRHP 77
+ + + ++ET+R Y + + R + E+ ++ I G + V++ +R
Sbjct: 209 DIIDDALKNRSGFVEETLRYYSPIQFLPHRFAAEDSYINNKKIKKGDQVIVYLGSANRDE 268
Query: 78 QHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRY 135
+ P+ F R + F +G CLG A L+ + ++ IL +
Sbjct: 269 TFFDEPDLFKIGR----------REMHLAFGIGIHMCLGAPLARLEASIALNDILNHF 316
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase,
oxidoreductase; HET: HEM; 2.00A {Sphingopyxis
macrogoltabida}
Length = 426
Score = 57.3 bits (139), Expect = 2e-10
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHR 75
+Q KL L+ ++ E +R + + R++ + L G TI G + ++ Y +R
Sbjct: 286 DQFAKLKANPALVETMVPEIIRWQTPLAHMRRTAIADSELGGKTIRKGDKVVMWYYSGNR 345
Query: 76 HPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRY 135
+ PE+F DR P + F G C+G + A +Q+++ IL R+
Sbjct: 346 DDEVIDRPEEFIIDR--------PRPRQHLSFGFGIHRCVGNRLAEMQLRILWEEILTRF 397
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 56.6 bits (137), Expect = 3e-10
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHR 75
+ ++ +LL +++E +R V R++ + LCG I AG + + +
Sbjct: 310 DLFARVKADRNLLPGIVEEAIRWTTPVQHFMRTAATDTELCGQKIAAGDWLMLNYVAANH 369
Query: 76 HPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRY 135
P +P P +F+P R N + F G+ CLG A L+M+V + +L R
Sbjct: 370 DPAQFPEPRKFDPT---------RPANRHLAFGAGSHQCLGLHLARLEMRVLLDVLLDRV 420
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A
{Pseudomonas SP} SCOP: a.104.1.1
Length = 428
Score = 55.8 bits (135), Expect = 7e-10
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHR 75
EQL L+ R++ E +R V R++ + + G I G I + +R
Sbjct: 288 EQLALAKSDPALIPRLVDEAVRWTAPVKSFMRTALADTEVRGQNIKRGDRIMLSYPSANR 347
Query: 76 HPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRRY 135
+ + NP++F+ R PN + F GA CLG A L+MK+ +L +
Sbjct: 348 DEEVFSNPDEFDIT---------RFPNRHLGFGWGAHMCLGQHLAKLEMKIFFEELLPKL 398
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding,
oxidoreductase, omega-hydroxylation, iron, heme, fatty
acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium
tuberculosis} PDB: 2wm4_A*
Length = 435
Score = 55.0 bits (133), Expect = 1e-09
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 15/122 (12%)
Query: 20 EQLQKL-----DLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLH 74
EQ + L ++E +R V + R+ +++ L G + AG ++++ +
Sbjct: 295 EQRDRWWSDFDGLAPTAVEEIVRWASPVVYMRRTLTQDIELRGTKMAAGDKVSLWYCSAN 354
Query: 75 RHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFS-LGARNCLGYKYAMLQMKVTVSTILR 133
R + +P F+ R+PN + F GA CLG A +++V + R
Sbjct: 355 RDESKFADPWTFDLA---------RNPNPHLGFGGGGAHFCLGANLARREIRVAFDELRR 405
Query: 134 RY 135
+
Sbjct: 406 QM 407
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron,
metal-binding, oxidoreductase; HET: HEM; 1.35A
{Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A*
3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Length = 433
Score = 54.6 bits (132), Expect = 1e-09
Identities = 26/156 (16%), Positives = 51/156 (32%), Gaps = 21/156 (13%)
Query: 20 EQLQKL--DLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHRHP 77
+Q + E +R V R++ + L G I G + +F +
Sbjct: 289 DQWELYKKVRPETAADEIVRWATPVTAFQRTALRDYELSGVQIKKGQRVVMFYRSANFDE 348
Query: 78 QHWPNPEQFNPDRFLPSESSKRHPNAFMPFS-LGARNCLGYKYAMLQMKVTVSTILRRYK 136
+ + +P FN R+PN + F GA C+G A + + + + +
Sbjct: 349 EVFQDPFTFNIL---------RNPNPHVGFGGTGAHYCIGANLARMTINLIFNAVADHMP 399
Query: 137 --VLVGDRCKTMEDIRFQFGLTLKTLPGNDIKLEPR 170
+ E +R + +K + R
Sbjct: 400 DLKPISA----PERLRSGWLNGIKHWQ---VDYTGR 428
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin
aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes
teichomyceticus} PDB: 3o1a_A*
Length = 384
Score = 52.2 bits (126), Expect = 1e-08
Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 19/121 (15%)
Query: 20 EQLQKL----DLLNRVIKETMRLYPAVPI-VARSSPEELHLCGYTIPAGVTIAVFIYGLH 74
+Q+ L +L++ +E +R V R + ++ + G I AG + + +
Sbjct: 247 DQMALLREKPELIDSATEEVLRHASIVEAPAPRVALADVRMAGRDIHAGDVLTCSMLATN 306
Query: 75 RHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVSTILRR 134
R P ++F+ R H M F G +C+G A LQ++V + ++ R
Sbjct: 307 RAP-----GDRFDITR-----EKATH----MAFGHGIHHCIGAPLARLQLRVALPAVVGR 352
Query: 135 Y 135
+
Sbjct: 353 F 353
>1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll,
selenomethionine; 1.90A {Xanthomonas citri} SCOP:
b.18.1.13 c.69.1.21
Length = 615
Score = 30.9 bits (69), Expect = 0.18
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 52 ELHLCGYTIPAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKR 99
L +T G + V + P + NP+ + P+ F +
Sbjct: 548 GLPTANHTFQPGHRVMVQVQS-SLFPLYDRNPQTYVPNIFFAKPGDYQ 594
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.23
Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 21/169 (12%)
Query: 2 YNEIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPAVPIVARSSPEELH---LCGY 58
Y E + L ND Y + +L ++ + + L PA ++ + G
Sbjct: 112 YIEQRDRLYNDNQVFAKY-NVSRLQPYLKLRQALLELRPAKNVL-------IDGVLGSGK 163
Query: 59 TIPAGVTIAVFIYGLHRHPQ---HWPNPEQFNPDRFLPSESSKRHPNAFMPFSLGARNCL 115
T A Y + W N + N + K ++ + +
Sbjct: 164 TWVALD--VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 116 GYKYAMLQMKVTVSTIL--RRYK--VLVGDRCKTMEDIRFQFGLTLKTL 160
K + ++ + +L + Y+ +LV + + F L+ K L
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN-AFNLSCKIL 269
Score = 28.3 bits (62), Expect = 1.5
Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 15/78 (19%)
Query: 14 DKVPTYEQLQKLDLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGL 73
T + LL + + + P E+ T P +++ +
Sbjct: 293 HHSMTLTPDEVKSLLLKYLD----------CRPQDLPREVLT---TNP--RRLSIIAESI 337
Query: 74 HRHPQHWPNPEQFNPDRF 91
W N + N D+
Sbjct: 338 RDGLATWDNWKHVNCDKL 355
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.46
Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 35/123 (28%)
Query: 5 IQAILGNDPDKVPTY---EQLQKL-DLLNRVIKETM--------RLYPAVPIVARS---- 48
I I+ N+P + + E+ +++ + + +I ET+ +++ + + S
Sbjct: 1661 ILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 49 SPEE-LHLCGYTIPAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKRHPNAFMPF 107
S + L +T PA + + L S+ F
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAF------------------EDLKSKGLIPADATFAGH 1762
Query: 108 SLG 110
SLG
Sbjct: 1763 SLG 1765
Score = 27.7 bits (61), Expect = 2.5
Identities = 22/129 (17%), Positives = 40/129 (31%), Gaps = 48/129 (37%)
Query: 4 EIQAILGNDPDKVPTYEQLQKLDLLNRVIKETMR------------LYPAVPIVARSSPE 51
+ +A G D ++P + + R +K + R L PA ++ +
Sbjct: 395 KAKAPSGLDQSRIP-FSE--------RKLKFSNRFLPVASPFHSHLLVPASDLI----NK 441
Query: 52 ELHLCGYTIPAG-VTIAVF-------------------IYGLHRHPQHWPNPEQFNPDRF 91
+L + A + I V+ + + R P W QF
Sbjct: 442 DLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI 501
Query: 92 L---PSESS 97
L P +S
Sbjct: 502 LDFGPGGAS 510
>2b9v_A Alpha-amino acid ester hydrolase; catalytic triad,
alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus}
SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A
Length = 652
Score = 29.3 bits (65), Expect = 0.70
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 52 ELHLCGYTIPAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKR 99
L + G I V I P + NP++F P+ F +
Sbjct: 558 TLPAVNHVFAKGHRIMVQIQS-SWFPLYDRNPQKFVPNIFDAKPADYT 604
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR
family, hydrolase; 2.35A {Escherichia coli} SCOP:
b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Length = 644
Score = 28.7 bits (65), Expect = 1.1
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 1 VYNEIQAILGNDPDKVPTYEQL-QKLDLLNRV 31
VY+++ L N D P E + +++ LL ++
Sbjct: 312 VYDQVSDWLENTGDWQPESEAIAEQVRLLAQI 343
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain,
activator, DNA-binding, NUC transcription; HET: DNA;
2.77A {Homo sapiens}
Length = 106
Score = 27.0 bits (60), Expect = 1.9
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 74 HRHPQHWPNPEQFNPDRFLPSESSKRH----PNAFMPFSLGAR 112
H H H + ++ + + + S +K H NAFM ++ AR
Sbjct: 3 HHHHHHVDDDDKMSENLYFQSSKNKPHVKRPMNAFMVWAQAAR 45
>3iii_A COCE/NOND family hydrolase; structural genomics, center for
structural genomi infectious diseases, csgid; HET: MSE
PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A*
Length = 560
Score = 27.7 bits (61), Expect = 2.1
Identities = 9/49 (18%), Positives = 13/49 (26%), Gaps = 1/49 (2%)
Query: 52 ELHLCGYTIPAGVTIAVFIYGLHRHPQHWPNPEQFNPDRFLPSESSKRH 100
EL G G T+ V + G P + + H
Sbjct: 495 ELLPSGTLFKQGETLEVVVKG-SEIVIGNSTPGMKTRYEHEETVNKGMH 542
>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural
genomics, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI-2; 1.72A {Homo sapiens} PDB:
2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*
Length = 306
Score = 26.5 bits (59), Expect = 4.2
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 19/77 (24%)
Query: 87 NPDRFLPSESSKRHP-NAFM-----------PFSLGARNCLGYKYAMLQMKVTVSTILRR 134
+ D + P R P + +G + ++ + + L
Sbjct: 179 DRDPWHPLSDGSRTPGTGSLAAAVETASGRQALVVGKPSPYMFECITENFSIDPARTL-- 236
Query: 135 YKVLVGDRCKTMEDIRF 151
+VGDR +T DI F
Sbjct: 237 ---MVGDRLET--DILF 248
>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein,
struc genomics, PSI, protein structure initiative; 2.80A
{Enterococcus faecalis} SCOP: c.108.1.14
Length = 264
Score = 25.9 bits (58), Expect = 5.9
Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 40/87 (45%)
Query: 87 NPDRFLPSE----------------SSKRH------PNAFMPFSLGARNCLGYKYAMLQM 124
NPD+ +P+E +++ P A + + A+ +
Sbjct: 148 NPDKNIPTERGLLPGAGSVVTFVETATQTKPVYIGKPKAII-----------MERAIAHL 196
Query: 125 KVTVSTILRRYKVLVGDRCKTMEDIRF 151
V ++ +VGD +T DI+
Sbjct: 197 GVEKEQVI-----MVGDNYET--DIQS 216
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC,
protein structure initia YORK SGX research center for
structural genomics; 1.60A {Bacillus subtilis}
Length = 266
Score = 25.6 bits (57), Expect = 8.0
Identities = 17/87 (19%), Positives = 25/87 (28%), Gaps = 40/87 (45%)
Query: 87 NPDRFLPSE----------------SSKRH------PNAFMPFSLGARNCLGYKYAMLQM 124
N D +P+E S+ P + + + AM +
Sbjct: 148 NGDIAIPTERGLLPGNGSLTSVLTVSTGVQPVFIGKPESII-----------MEQAMRVL 196
Query: 125 KVTVSTILRRYKVLVGDRCKTMEDIRF 151
VS L +VGD T DI
Sbjct: 197 GTDVSETL-----MVGDNYAT--DIMA 216
>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG,
protein structure initiative, joint center for
structural G hydrolase; 2.40A {Thermotoga maritima}
SCOP: c.108.1.14 PDB: 1pw5_A*
Length = 271
Score = 25.6 bits (57), Expect = 8.4
Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 27/81 (33%)
Query: 87 NPDRFLPSE----------------SSKRHPNAFMPFSLGARNCLGYKYAMLQMKVTVST 130
+PD PS+ S+ R P G N L + V
Sbjct: 159 HPDINCPSKEGPVPDAGSIMAAIEASTGRKP----DLIAGKPNPLVVDVISEKFGVPKER 214
Query: 131 ILRRYKVLVGDRCKTMEDIRF 151
+ +VGDR T D++
Sbjct: 215 MA-----MVGDRLYT--DVKL 228
>1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A
{Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21
Length = 763
Score = 25.9 bits (56), Expect = 8.9
Identities = 8/60 (13%), Positives = 16/60 (26%), Gaps = 4/60 (6%)
Query: 25 LDLLNRVIKETMRLYPAVPIVARSSPEELHLCGYTIPAGVTIAVFIYGLHRHPQHWPNPE 84
+L N+ + L + EL Y + + V +Y +
Sbjct: 686 TNLQNQSLLTVSDLKADEWFTIKF---ELQPTIYHLEKADKLRVILYS-TDFEHTVRDNR 741
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 25.6 bits (57), Expect = 8.9
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 8 ILGNDPDKVPTYEQLQKLDLLNRVIKETMRLYPA 41
I G + PTY+ + L V ++ PA
Sbjct: 261 IGGIGYEIGPTYDLTPTYEFLREVSYYFTKIIPA 294
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 25.5 bits (56), Expect = 9.5
Identities = 5/39 (12%), Positives = 11/39 (28%), Gaps = 1/39 (2%)
Query: 39 YPAVPIVARSSPEE-LHLCGYTIPAGVTIAVFIYGLHRH 76
+ S+ + + G T+ +IY
Sbjct: 288 DIKLTTHDESTRYPNIFMIGATVENDNAKLCYIYKFRAR 326
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.140 0.431
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,768,854
Number of extensions: 160716
Number of successful extensions: 564
Number of sequences better than 10.0: 1
Number of HSP's gapped: 473
Number of HSP's successfully gapped: 97
Length of query: 170
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 83
Effective length of database: 4,272,666
Effective search space: 354631278
Effective search space used: 354631278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.5 bits)