BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1887
(653 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 11/159 (6%)
Query: 413 VLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLG---GEILYTAI-- 467
+++ + D NDN P FT ++ + E A G V++V ATD D ++ I YT +
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 153
Query: 468 ---LGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTI 524
L +KN ++ TG I++ DRE Y V+A D+QG GL T +T+
Sbjct: 154 DPELPHKNM-FTVNRDTGVISVLTSG-LDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
Query: 525 LDVNDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDA 563
D+NDNAP+F + ++ + + N T +K TD DA
Sbjct: 212 KDINDNAPVFNPSTYQGQVPENEVNARIAT-LKVTDDDA 249
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 490 QQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRN 549
Q DRE ++Y A G + + + +T+ D NDN P F Q FE +A +
Sbjct: 64 QPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP 123
Query: 550 FSERTFIKATDQDAEAP--NNIVRYEIISGN----YDNKFSLHPETGV 591
+ + ATD D + N + Y I+S + + N F+++ +TGV
Sbjct: 124 GTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGV 171
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 94/223 (42%), Gaps = 26/223 (11%)
Query: 381 LDYERTRTLSFVIVAKEIXXXXXXXXXXXQAPVLVYINDVNDNPPVFTATLYTAKIPENA 440
LD E T + V+ A ++ A ++ + D+NDN PVF + Y ++PEN
Sbjct: 179 LDRESYPTYTLVVQAADLQGEGLSTT----AKAVITVKDINDNAPVFNPSTYQGQVPENE 234
Query: 441 TAGEKVVQVKATDVDT--NLGGEILYTAILGYKNSSLEL-DAHTGDITIANGQQFDREEA 497
++ +K TD D + +YT + + + D T D + + D E
Sbjct: 235 VNA-RIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAK 293
Query: 498 SEYKFQVEARD---MQGLGLRTVVPLQLTILDVNDNAPIF------VQTPFEFVLASDSR 548
+Y V + +G + + + + ++DVN+ APIF V+ P +F + +
Sbjct: 294 QQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQEIT 352
Query: 549 NFSERTFIKATDQDAEAPNNIVRYEIISGNYDNKFSLHPETGV 591
+++ R DQ + Y I + N ++PETG
Sbjct: 353 SYTAREPDTFMDQK-------ITYRIWR-DTANWLEINPETGA 387
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium
pdb|1EDH|B Chain B, E-Cadherin Domains 1 And 2 In Complex With Calcium
Length = 226
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 10/130 (7%)
Query: 413 VLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLG---GEILYTAI-- 467
+++ + D NDN P FT ++ + E A G V++V ATD D ++ I YT +
Sbjct: 96 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 155
Query: 468 ---LGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTI 524
L +KN ++ TG I++ DRE Y V+A D+QG GL T +T+
Sbjct: 156 DPELPHKNM-FTVNRDTGVISVLT-SGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 213
Query: 525 LDVNDNAPIF 534
D+NDNAP+F
Sbjct: 214 KDINDNAPVF 223
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 490 QQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRN 549
Q DRE ++Y A G + + + +T+ D NDN P F Q FE +A +
Sbjct: 66 QPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP 125
Query: 550 FSERTFIKATDQDAEAP--NNIVRYEIISGN----YDNKFSLHPETGV 591
+ + ATD D + N + Y I+S + + N F+++ +TGV
Sbjct: 126 GTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGV 173
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3
Length = 322
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 83/170 (48%), Gaps = 9/170 (5%)
Query: 414 LVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGG---EILYTAILGY 470
++ + D+NDN P F Y A +PE + G V V ATD D + G +++Y+ + G
Sbjct: 93 IIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQ 152
Query: 471 KNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGL--GLRTVVPLQLTILDVN 528
S+E + + N DRE EY ++A+DM G GL L +T+ DVN
Sbjct: 153 PYFSIEPETAIIKTALPN---MDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVN 209
Query: 529 DNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDAEAPNNIVRYEIISGN 578
DN P F Q+ + F + D + +KA DQD N Y+II G+
Sbjct: 210 DNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDI-GENAQSSYDIIDGD 258
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 419 DVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLEL- 477
DVNDNPP F +LY +PE+ G + +VKA D D + Y I G + E+
Sbjct: 207 DVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEIT 266
Query: 478 -DAHTGDITIANGQQFDREEASEYKFQVEARDMQ 510
DA D I + D E Y +VEA ++
Sbjct: 267 SDAQAQDGVIRLRKPLDFETKKSYTLKVEAANIH 300
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 481 TGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQ------LTILDVNDNAPIF 534
TGDI ++ DREE +EY +A D + T PL+ + + D+NDNAP F
Sbjct: 54 TGDIHAI--KRLDREEKAEYTLTAQAVDFE-----TNKPLEPPSEFIIKVQDINDNAPEF 106
Query: 535 VQTPFEFVLASDSRNFSERTFIKATDQDAEAPNNIVR--YEIISGNYDNKFSLHPETGV 591
+ P+ + S + T + ATD D N + Y I+ G FS+ PET +
Sbjct: 107 LNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQ--PYFSIEPETAI 163
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 8/122 (6%)
Query: 410 QAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGG---EILYTA 466
++ ++ I+D+NDN P+FT +YTA +PE A G VVQV ATD D G +++Y+
Sbjct: 89 ESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSI 148
Query: 467 ILGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGL--GLRTVVPLQLTI 524
+ G S+E + TG I A DRE +Y+ ++A+DM G GL + +T+
Sbjct: 149 LQGQPYFSVE--SETGIIKTAL-LNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITL 205
Query: 525 LD 526
D
Sbjct: 206 TD 207
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 21/125 (16%)
Query: 477 LDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQ------LTILDVNDN 530
++ +TGDI ++ DREE Y + +A + RT P++ + I D+NDN
Sbjct: 50 INENTGDIQAT--KRLDREEKPVYILRAQA-----VNRRTGRPVEPESEFIIKIHDINDN 102
Query: 531 APIFVQTPFEFVL--ASDSRNFSERTFIKATDQDAEAPNNIVR--YEIISGNYDNKFSLH 586
PIF + + + +D F + + ATD D N + Y I+ G FS+
Sbjct: 103 EPIFTKDVYTATVPEMADVGTFVVQ--VTATDADDPTYGNSAKVVYSILQGQ--PYFSVE 158
Query: 587 PETGV 591
ETG+
Sbjct: 159 SETGI 163
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain
pdb|1FF5|B Chain B, Structure Of E-Cadherin Double Domain
Length = 219
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 65/127 (51%), Gaps = 10/127 (7%)
Query: 413 VLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNL---GGEILYTAI-- 467
+++ + D NDN P FT ++ + E A G V++V ATD D ++ I YT +
Sbjct: 95 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 154
Query: 468 ---LGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTI 524
L +KN ++ TG I++ DRE Y V+A D+QG GL T +T+
Sbjct: 155 DPELPHKN-MFTVNRDTGVISVLT-SGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 212
Query: 525 LDVNDNA 531
D+NDNA
Sbjct: 213 KDINDNA 219
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 490 QQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRN 549
Q DRE ++Y A G + + + +T+ D NDN P F Q FE +A +
Sbjct: 65 QPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP 124
Query: 550 FSERTFIKATDQDAEAP--NNIVRYEIISGN----YDNKFSLHPETGV 591
+ + ATD D + N + Y I+S + + N F+++ +TGV
Sbjct: 125 GTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGV 172
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 10/134 (7%)
Query: 410 QAPVLVYIN--DVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTN---LGGEILY 464
+ P+ + IN D NDN P FT ++ + E G +V+ V ATD D N L G + Y
Sbjct: 244 EEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSY 303
Query: 465 TAILGYKNSSL----ELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPL 520
+ + + ++ TG I++ G DRE+ EY V+A D++G GL
Sbjct: 304 SILKQDPEEPIPNLFTINRETGVISLI-GTGLDREKFPEYTLTVQATDLEGAGLSVEGKA 362
Query: 521 QLTILDVNDNAPIF 534
+ I D NDNAPIF
Sbjct: 363 IIQITDANDNAPIF 376
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 24/140 (17%)
Query: 410 QAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAIL- 468
+ ++ I D NDN P+F YTA +PEN G +V ++ TD+D + G + A+
Sbjct: 359 EGKAIIQITDANDNAPIFDPKTYTALVPENEI-GFEVQRLSVTDLD--MPGTPAWQAVYK 415
Query: 469 ------GYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQL 522
G+ N + + +++ G +T A G F E +Y Q+ + + VPL
Sbjct: 416 IRVNEGGFFNITTDPESNQGILTTAKGLDF--ELRKQYVLQITVENAEPFS----VPLPT 469
Query: 523 TIL-------DVNDNAPIFV 535
+ DVN+ AP FV
Sbjct: 470 STATVTVTVEDVNE-APFFV 488
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 492 FDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFS 551
DREE +Y A G + + + + ++D NDN P F Q F + + +
Sbjct: 221 LDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGT 280
Query: 552 ERTFIKATDQD--AEAPNNIVRYEIISGNYD----NKFSLHPETGV 591
+ + ATD+D ++ N ++ Y I+ + + N F+++ ETGV
Sbjct: 281 QVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGV 326
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 14/122 (11%)
Query: 419 DVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELD 478
DVN+ P F + + E+ + GEK++ + A D D ++ Y +G +
Sbjct: 480 DVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSY--FIGNDPARWLTV 536
Query: 479 AHTGDITIANGQQFDREEASEYK-------FQVEARDMQGLGLRTVVPLQLTILDVNDNA 531
I NG DRE SEY + D +G T L L +LDVNDN
Sbjct: 537 NKDNGIVTGNGN-LDRE--SEYVKNNTYTVIMLVTDDGVSVGTGTGT-LILHVLDVNDNG 592
Query: 532 PI 533
P+
Sbjct: 593 PV 594
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 10/134 (7%)
Query: 410 QAPVLVYIN--DVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTN---LGGEILY 464
+ P+ + IN D NDN P FT ++ + E G +V+ V ATD D N L G + Y
Sbjct: 95 EEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSY 154
Query: 465 TAILGYKNSSL----ELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPL 520
+ + + ++ TG I++ G DRE+ EY V+A D++G GL
Sbjct: 155 SILKQDPEEPIPNLFTINRETGVISLI-GTGLDREKFPEYTLTVQATDLEGAGLSVEGKA 213
Query: 521 QLTILDVNDNAPIF 534
+ I D NDNAPIF
Sbjct: 214 IIQITDANDNAPIF 227
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 410 QAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAIL- 468
+ ++ I D NDN P+F YTA +PEN G +V ++ TD+D + G + A+
Sbjct: 210 EGKAIIQITDANDNAPIFDPKTYTALVPENEI-GFEVQRLSVTDLD--MPGTPAWQAVYK 266
Query: 469 ------GYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQ 510
G+ N + + +++ G +T A G F E +Y Q+ + +
Sbjct: 267 IRVNEGGFFNITTDPESNQGILTTAKGLDF--ELRKQYVLQITVENAE 312
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 492 FDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFS 551
DREE +Y A G + + + + ++D NDN P F Q F + + +
Sbjct: 72 LDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGT 131
Query: 552 ERTFIKATDQD--AEAPNNIVRYEIISGNYD----NKFSLHPETGV 591
+ + ATD+D ++ N ++ Y I+ + + N F+++ ETGV
Sbjct: 132 QVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGV 177
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 67/163 (41%), Gaps = 21/163 (12%)
Query: 419 DVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELD 478
DVN+ P F + + E+ + GEK++ + A D D ++ Y +G +
Sbjct: 331 DVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSY--FIGNDPARWLTV 387
Query: 479 AHTGDITIANGQQFDREEASEYK-------FQVEARDMQGLGLRTVVPLQLTILDVNDNA 531
I NG DRE SEY + D +G T L L +LDVNDN
Sbjct: 388 NKDNGIVTGNGN-LDRE--SEYVKNNTYTVIMLVTDDGVSVGTGTGT-LILHVLDVNDNG 443
Query: 532 PIFVQTPFEFVLASDSRNFSERTFIKATDQDAEAPNNIVRYEI 574
P V +P F + +N + T DA+ P N Y++
Sbjct: 444 P--VPSPRVFTMC--DQNPEPQVL---TISDADIPPNTYPYKV 479
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 70/143 (48%), Gaps = 16/143 (11%)
Query: 410 QAPVLVYIN--DVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVD--TNLGGEILYT 465
+ P+ + IN D+NDN P F ++ +PE + G V+ V A D D L G + Y
Sbjct: 89 ENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRY- 147
Query: 466 AILGYKNSS-----LELDAHTGD-ITIANGQQFDREEASEYKFQVEARDMQG---LGLRT 516
IL S+ ++ TGD IT+A G DRE+ +Y ++A DM+G GL
Sbjct: 148 RILSQAPSTPSPNMFTINNETGDIITVAAG--LDREKVQQYTLIIQATDMEGNPTYGLSN 205
Query: 517 VVPLQLTILDVNDNAPIFVQTPF 539
+T+ DVNDN P F F
Sbjct: 206 TATAVITVTDVNDNPPEFTAMTF 228
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 107/448 (23%), Positives = 160/448 (35%), Gaps = 66/448 (14%)
Query: 127 IYRLRASDSDKDYPLTFDATDFGSYVVKIKSLPCSKNSSFCEANVYLDRVLVPGQVFQFR 186
+ R+R SD DK+ L + T G+ + S LDR L+ F R
Sbjct: 21 LVRIR-SDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELI--ARFHLR 77
Query: 187 IIVKDTRGDTTTVPTSLTATDAALNIN-AQFPH-----------IPGVIVV--------- 225
D G+ P + +N N +F H PG V+
Sbjct: 78 AHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADD 137
Query: 226 PEVLGTYLLWRHLSGPKNMYLMREIRLSKPYRELHTVASG------QPVILMVLAEEERK 279
P L L +R LS + ++ ++ TVA+G Q L++ A +
Sbjct: 138 PNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEG 197
Query: 280 DLNEPSPQSSTATIALVFDQAINTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDD 339
N S+TAT + + PP F + + + EN +I A + VTD
Sbjct: 198 --NPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENR---VDVIVA---NLTVTDK 249
Query: 340 NM----GKNGIFSLTLENNNGTFEIWPSVVERKAQFTIRVRNNKNLDYERTRTLSFVIVA 395
+ N + ++ + G F I T+ K +D+E R + A
Sbjct: 250 DQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVV----KPIDFETNRMFVLTVAA 305
Query: 396 KEIXXXXXXXXXXXQ--APVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATD 453
+ Q A V V + DVN+NP F + E AG + + A D
Sbjct: 306 ENQVPLAKGIQHPPQSTATVSVTVIDVNENP-YFAPNPKIIRQEEGLHAGTMLTTLTAQD 364
Query: 454 VDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQFDREEASE----YKFQVEARD- 508
D + I YT + N L++D G IT DRE + Y A D
Sbjct: 365 PDRYMQQNIRYTKLSDPANW-LKIDPVNGQITTI--AVLDRESPNVKNNIYNATFLASDN 421
Query: 509 ----MQGLGLRTVVPLQLTILDVNDNAP 532
M G G LQ+ +LD+NDNAP
Sbjct: 422 GIPPMSGTGT-----LQIYLLDINDNAP 444
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 490 QQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRN 549
+ DRE + + + A D+ G + + + + ++D+NDN P F+ + + S+
Sbjct: 64 KPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKP 123
Query: 550 FSERTFIKATD-QDAEAPNNIVRYEIISGN----YDNKFSLHPETG 590
+ + A D D A N ++RY I+S N F+++ ETG
Sbjct: 124 GTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETG 169
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 8/118 (6%)
Query: 414 LVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGG---EILYTAILGY 470
+V + D+NDNPP F +Y A +PE + G V+QV A+D D G +++Y+ + G
Sbjct: 94 IVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQ 153
Query: 471 KNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGL--GLRTVVPLQLTILD 526
S+E A TG I A DRE EY ++A+DM G GL + +T+ D
Sbjct: 154 PYFSVE--AQTGIIRTAL-PNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTD 208
>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human
Protocadherin 7
Length = 119
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 8/116 (6%)
Query: 421 NDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSS----LE 476
NDN P F ++Y A + EN+ G ++Q++A D+D + G+I Y + G S L
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEY--VFGAATESVRRLLR 65
Query: 477 LDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAP 532
LD +G +++ + DREE ++ +F V ARD + L I D NDN P
Sbjct: 66 LDETSGWLSVL--HRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 5/118 (4%)
Query: 413 VLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKN 472
V + + DVNDN P F Y+ +IPEN G + V ATD D GG +LY+ +
Sbjct: 95 VNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYS--FQPPS 152
Query: 473 SSLELDAHTGDITIANGQQFDREEASEYKFQVEARDM-QGLGLRTVVPLQLTILDVND 529
+D+ G +T+ Q+ D E Y+ V A D + L T+ L + I D+ D
Sbjct: 153 PFFAIDSARGIVTVI--QELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQD 208
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 12/149 (8%)
Query: 425 PVFTATLYTAK--IPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSL-ELDAHT 481
P FT + I E+ G V Q+ A D+D + L + G + S ++ T
Sbjct: 6 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD----NDPLVFGVSGEEASRFFAVEPDT 61
Query: 482 GDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEF 541
G + + Q DRE SE+ + D QG+ R V + + DVNDNAP F P+
Sbjct: 62 GVVWLR--QPLDRETKSEFTVEFSVSDHQGVITRKV---NIQVGDVNDNAPTFHNQPYSV 116
Query: 542 VLASDSRNFSERTFIKATDQDAEAPNNIV 570
+ ++ + + ATD D A +++
Sbjct: 117 RIPENTPVGTPIFIVNATDPDLGAGGSVL 145
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant
pdb|3Q2N|B Chain B, Mouse E-Cadherin Ec1-2 L175d Mutant
Length = 213
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 413 VLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNL---GGEILYTAI-- 467
+++ + D NDN P FT ++ + E A G V++V ATD D ++ I YT +
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 153
Query: 468 ---LGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTI 524
L +KN ++ TG I++ + DRE Y V+A D+QG GL T +T+
Sbjct: 154 DPELPHKN-MFTVNRDTGVISV-DTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
Query: 525 LD 526
D
Sbjct: 212 KD 213
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 490 QQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRN 549
Q DRE ++Y A G + + + +T+ D NDN P F Q FE +A +
Sbjct: 64 QPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP 123
Query: 550 FSERTFIKATDQDAEAP--NNIVRYEIISGN----YDNKFSLHPETGV 591
+ + ATD D + N + Y I+S + + N F+++ +TGV
Sbjct: 124 GTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGV 171
>pdb|1Q1P|A Chain A, E-Cadherin Activation
Length = 212
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 10/122 (8%)
Query: 413 VLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNL---GGEILYTAI-- 467
+++ + D NDN P FT ++ + E A G V++V ATD D ++ I YT +
Sbjct: 93 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 152
Query: 468 ---LGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTI 524
L +KN ++ TG I++ DRE Y V+A D+QG GL T +T+
Sbjct: 153 DPELPHKN-MFTVNRDTGVISVLT-SGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 210
Query: 525 LD 526
D
Sbjct: 211 KD 212
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 490 QQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRN 549
Q DRE ++Y A G + + + +T+ D NDN P F Q FE +A +
Sbjct: 63 QPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP 122
Query: 550 FSERTFIKATDQDAEAP--NNIVRYEIISGN----YDNKFSLHPETGV 591
+ + ATD D + N + Y I+S + + N F+++ +TGV
Sbjct: 123 GTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGV 170
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2
Length = 213
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 10/122 (8%)
Query: 413 VLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNL---GGEILYTAI-- 467
+++ + D NDN P FT ++ + E A G V++V ATD D ++ I YT +
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 153
Query: 468 ---LGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTI 524
L +KN ++ TG I++ DRE Y V+A D+QG GL T +T+
Sbjct: 154 DPELPHKN-MFTVNRDTGVISVLT-SGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
Query: 525 LD 526
D
Sbjct: 212 KD 213
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 490 QQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRN 549
Q DRE ++Y A G + + + +T+ D NDN P F Q FE +A +
Sbjct: 64 QPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP 123
Query: 550 FSERTFIKATDQDAEAP--NNIVRYEIISGN----YDNKFSLHPETGV 591
+ + ATD D + N + Y I+S + + N F+++ +TGV
Sbjct: 124 GTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGV 171
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a
pdb|3LNI|B Chain B, Crystal Structure Of E-Cadherin Ec12 E89a
Length = 213
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 10/122 (8%)
Query: 413 VLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNL---GGEILYTAI-- 467
+++ + D NDN P FT ++ + E A G V++V ATD D ++ I YT +
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 153
Query: 468 ---LGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTI 524
L +KN ++ TG I++ DRE Y V+A D+QG GL T +T+
Sbjct: 154 DPELPHKN-MFTVNRDTGVISVLT-SGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
Query: 525 LD 526
D
Sbjct: 212 KD 213
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 490 QQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRN 549
Q DRE ++Y A G + + + +T+ D NDN P F Q FE +A +
Sbjct: 64 QPLDREAIAKYILYSHAVSSNGEAVADPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP 123
Query: 550 FSERTFIKATDQDAEAP--NNIVRYEIISGN----YDNKFSLHPETGV 591
+ + ATD D + N + Y I+S + + N F+++ +TGV
Sbjct: 124 GTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGV 171
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension
pdb|3LNG|B Chain B, Crystal Structure Of E-Cadherin Ec12 Aa Extension
Length = 215
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 10/122 (8%)
Query: 413 VLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNL---GGEILYTAI-- 467
+++ + D NDN P FT ++ + E A G V++V ATD D ++ I YT +
Sbjct: 96 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 155
Query: 468 ---LGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTI 524
L +KN ++ TG I++ DRE Y V+A D+QG GL T +T+
Sbjct: 156 DPELPHKN-MFTVNRDTGVISVLT-SGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 213
Query: 525 LD 526
D
Sbjct: 214 KD 215
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 490 QQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRN 549
Q DRE ++Y A G + + + +T+ D NDN P F Q FE +A +
Sbjct: 66 QPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP 125
Query: 550 FSERTFIKATDQDAEAP--NNIVRYEIISGN----YDNKFSLHPETGV 591
+ + ATD D + N + Y I+S + + N F+++ +TGV
Sbjct: 126 GTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGV 173
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant
pdb|3Q2L|B Chain B, Mouse E-Cadherin Ec1-2 V81d Mutant
Length = 213
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 10/122 (8%)
Query: 413 VLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNL---GGEILYTAI-- 467
+++ + D NDN P FT ++ + E A G V++V ATD D ++ I YT +
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 153
Query: 468 ---LGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTI 524
L +KN ++ TG I++ DRE Y V+A D+QG GL T +T+
Sbjct: 154 DPELPHKN-MFTVNRDTGVISVLT-SGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
Query: 525 LD 526
D
Sbjct: 212 KD 213
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 490 QQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRN 549
Q DRE ++Y A G + + + +T+ D NDN P F Q FE +A +
Sbjct: 64 QPLDREAIAKYILYSHADSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP 123
Query: 550 FSERTFIKATDQDAEAP--NNIVRYEIISGN----YDNKFSLHPETGV 591
+ + ATD D + N + Y I+S + + N F+++ +TGV
Sbjct: 124 GTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGV 171
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e
Length = 213
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 10/122 (8%)
Query: 413 VLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNL---GGEILYTAI-- 467
+++ + D NDN P FT ++ + E A G V++V ATD D ++ I YT +
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 153
Query: 468 ---LGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTI 524
L +KN ++ TG I++ DRE Y V+A D+QG GL T +T+
Sbjct: 154 DPELPHKN-MFTVNRDTGVISVLT-SGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
Query: 525 LD 526
D
Sbjct: 212 KD 213
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 490 QQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRN 549
Q DRE ++Y A G + + + +T+ D NDN P F Q FE +A +
Sbjct: 64 QPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP 123
Query: 550 FSERTFIKATDQDAEAP--NNIVRYEIISGN----YDNKFSLHPETGV 591
+ + ATD D + N + Y I+S + + N F+++ +TGV
Sbjct: 124 GTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGV 171
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a
pdb|3LNH|B Chain B, Crystal Structure Of E-Cadherin Ec12 W2a
Length = 213
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 10/122 (8%)
Query: 413 VLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNL---GGEILYTAI-- 467
+++ + D NDN P FT ++ + E A G V++V ATD D ++ I YT +
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 153
Query: 468 ---LGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTI 524
L +KN ++ TG I++ DRE Y V+A D+QG GL T +T+
Sbjct: 154 DPELPHKN-MFTVNRDTGVISVLT-SGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
Query: 525 LD 526
D
Sbjct: 212 KD 213
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 490 QQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRN 549
Q DRE ++Y A G + + + +T+ D NDN P F Q FE +A +
Sbjct: 64 QPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP 123
Query: 550 FSERTFIKATDQDAEAP--NNIVRYEIISGN----YDNKFSLHPETGV 591
+ + ATD D + N + Y I+S + + N F+++ +TGV
Sbjct: 124 GTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGV 171
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a
pdb|3LNF|B Chain B, Crystal Structure Of E-Cadherin Ec12 K14ew2a
Length = 213
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 10/122 (8%)
Query: 413 VLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNL---GGEILYTAI-- 467
+++ + D NDN P FT ++ + E A G V++V ATD D ++ I YT +
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 153
Query: 468 ---LGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTI 524
L +KN ++ TG I++ DRE Y V+A D+QG GL T +T+
Sbjct: 154 DPELPHKN-MFTVNRDTGVISVLT-SGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
Query: 525 LD 526
D
Sbjct: 212 KD 213
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 490 QQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRN 549
Q DRE ++Y A G + + + +T+ D NDN P F Q FE +A +
Sbjct: 64 QPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP 123
Query: 550 FSERTFIKATDQDAEAP--NNIVRYEIISGN----YDNKFSLHPETGV 591
+ + ATD D + N + Y I+S + + N F+++ +TGV
Sbjct: 124 GTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGV 171
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
pdb|3QRB|B Chain B, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
Length = 213
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 10/122 (8%)
Query: 413 VLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNL---GGEILYTAI-- 467
+++ + D NDN P FT ++ + E A G V++V ATD D ++ I YT +
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQ 153
Query: 468 ---LGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTI 524
L +KN ++ TG I++ DRE Y V+A D+QG GL T +T+
Sbjct: 154 DPELPHKN-MFTVNRDTGVISVLT-SGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITV 211
Query: 525 LD 526
D
Sbjct: 212 KD 213
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 490 QQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRN 549
Q DRE ++Y A G + + + +T+ D NDN P F Q FE +A +
Sbjct: 64 QPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP 123
Query: 550 FSERTFIKATDQDAEAP--NNIVRYEIISGN----YDNKFSLHPETGV 591
+ + ATD D + N + Y I+S + + N F+++ +TGV
Sbjct: 124 GTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGV 171
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 413 VLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKN 472
V + + DVNDN P F Y+ +IPEN G + V ATD D GG +LY+ +
Sbjct: 96 VNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYS--FQPPS 153
Query: 473 SSLELDAHTGDITIANGQQFDREEASEYKFQVEARDM-QGLGLRTVVPLQLTILDV 527
+D+ G +T+ Q+ D E Y+ V A D + L T+ L + I D+
Sbjct: 154 PFFAIDSARGIVTVI--QELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDL 207
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 12/149 (8%)
Query: 425 PVFTATLYTAK--IPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSL-ELDAHT 481
P FT + I E+ G V Q+ A D+D + L + G + S ++ T
Sbjct: 7 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD----NDPLVFGVPGEEASRFFAVEPDT 62
Query: 482 GDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEF 541
G + + Q DRE SE+ + D QG+ R V + + DVNDNAP F P+
Sbjct: 63 GVVWLR--QPLDRETKSEFTVEFSVSDHQGVITRKV---NIQVGDVNDNAPTFHNQPYSV 117
Query: 542 VLASDSRNFSERTFIKATDQDAEAPNNIV 570
+ ++ + + ATD D A +++
Sbjct: 118 RIPENTPVGTPIFIVNATDPDLGAGGSVL 146
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 413 VLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKN 472
V + + DVNDN P F Y+ +IPEN G + V ATD D GG +LY+ +
Sbjct: 96 VNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYS--FQPPS 153
Query: 473 SSLELDAHTGDITIANGQQFDREEASEYKFQVEARDM-QGLGLRTVVPLQLTILDV 527
+D+ G +T+ Q+ D E Y+ V A D + L T+ L + I D+
Sbjct: 154 PFFAIDSARGIVTVI--QELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDL 207
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 12/149 (8%)
Query: 425 PVFTATLYTAK--IPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSL-ELDAHT 481
P FT + I E+ G V Q+ A D+D + L + G + S ++ T
Sbjct: 7 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD----NDPLVFGVSGEEASRFFAVEPDT 62
Query: 482 GDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEF 541
G + + Q DRE SE+ + D QG+ R V + + DVNDNAP F P+
Sbjct: 63 GVVWLR--QPLDRETKSEFTVEFSVSDHQGVITRKV---NIQVGDVNDNAPTFHNQPYSV 117
Query: 542 VLASDSRNFSERTFIKATDQDAEAPNNIV 570
+ ++ + + ATD D A +++
Sbjct: 118 RIPENTPVGTPIFIVNATDPDLGAGGSVL 146
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
pdb|3K5R|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
Length = 218
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 11/125 (8%)
Query: 473 SSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAP 532
+ ++ +TG +++ + DRE + Y+ VE D G L VPL++ ++D NDN P
Sbjct: 49 GTFRINENTGSVSVT--RTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRP 106
Query: 533 IFVQTPFEFVLASDSRNFSERTFIKATDQDAEAP---NNIVRYEIISGNYD----NKFSL 585
IF + P+ + S + T ++ T DA+ P N ++RY I D N F +
Sbjct: 107 IFREGPYIGHVMEGSPTGT--TVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYI 164
Query: 586 HPETG 590
PE G
Sbjct: 165 DPEKG 169
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 17/114 (14%)
Query: 412 PVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGY- 470
P+ V + D NDN P+F Y + E + G V+++ A D D A+L Y
Sbjct: 93 PLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADD----PATDNALLRYN 148
Query: 471 ---------KNSSLELDAHTGDI-TIANGQQFDRE--EASEYKFQVEARDMQGL 512
+ +D GDI T+ + DRE E +Y+ +EA+DM GL
Sbjct: 149 IRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGL 202
>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human
Protocadherin 9
Length = 114
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Query: 421 NDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYK-----NSSL 475
NDN PVF IPENA G V+Q+ ATD D EI Y I G +
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRY--IFGAQVAPATKRLF 65
Query: 476 ELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVN 528
L+ TG IT+ + DREE + +K V A D R V + +T DVN
Sbjct: 66 ALNNTTGLITVQ--RSLDREETAIHKVTVLASDGSSTPARATVTINVT--DVN 114
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 413 VLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKN 472
V + + VNDN P F Y+ +IPEN G + V ATD D GG +LY+ +
Sbjct: 96 VNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYS--FQPPS 153
Query: 473 SSLELDAHTGDITIANGQQFDREEASEYKFQVEARDM-QGLGLRTVVPLQLTILDV 527
+D+ G +T+ Q+ D E Y+ V A D + L T+ L + I D+
Sbjct: 154 PFFAIDSARGIVTVI--QELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDL 207
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 12/149 (8%)
Query: 425 PVFTATLYTAK--IPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSL-ELDAHT 481
P FT + I E+ G V Q+ A D+D + L + G + S ++ T
Sbjct: 7 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD----NDPLVFGVSGEEASRFFAVEPDT 62
Query: 482 GDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEF 541
G + + Q DRE SE+ + D QG+ R V + + VNDNAP F P+
Sbjct: 63 GVVWLR--QPLDRETKSEFTVEFSVSDHQGVITRKV---NIQVGGVNDNAPTFHNQPYSV 117
Query: 542 VLASDSRNFSERTFIKATDQDAEAPNNIV 570
+ ++ + + ATD D A +++
Sbjct: 118 RIPENTPVGTPIFIVNATDPDLGAGGSVL 146
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 14/112 (12%)
Query: 413 VLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGY-- 470
+L+ + D NDN P FT ++ + E A G V++V ATD D ++ Y A + Y
Sbjct: 94 ILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDADDDVN---TYNAAIAYTI 150
Query: 471 --------KNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGL 514
+ ++ +TG I++ DRE Y V+A D+QG GL
Sbjct: 151 LSQDPELPDKNMFTINRNTGVISVVT-TGLDRESFPTYTLVVQAADLQGEGL 201
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Query: 490 QQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRN 549
+ DRE + Y A G + + + +T+ D NDN P F Q F+ + +
Sbjct: 64 EPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDNKPEFTQEVFKGSVMEGALP 123
Query: 550 FSERTFIKATDQDAEAP--NNIVRYEIISGNYD----NKFSLHPETGV 591
+ + ATD D + N + Y I+S + + N F+++ TGV
Sbjct: 124 GTSVMEVTATDADDDVNTYNAAIAYTILSQDPELPDKNMFTINRNTGV 171
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 16/130 (12%)
Query: 410 QAPVLVYIN--DVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVD--TNLGGEILYT 465
+ P+ + IN D+NDN P F ++ +PE + G V+ V A D D L G + Y
Sbjct: 89 ENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRY- 147
Query: 466 AILGYKNSS-----LELDAHTGD-ITIANGQQFDREEASEYKFQVEARDMQG---LGLRT 516
IL S+ ++ TGD IT+A G DRE+ +Y ++A DM+G GL
Sbjct: 148 RILSQAPSTPSPNMFTINNETGDIITVAAG--LDREKVQQYTLIIQATDMEGNPTYGLSN 205
Query: 517 VVPLQLTILD 526
+T+ D
Sbjct: 206 TATAVITVTD 215
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 490 QQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRN 549
+ DRE + + + A D+ G + + + + ++D+NDN P F+ + + S+
Sbjct: 64 KPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKP 123
Query: 550 FSERTFIKATD-QDAEAPNNIVRYEIISGN----YDNKFSLHPETG 590
+ + A D D A N ++RY I+S N F+++ ETG
Sbjct: 124 GTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETG 169
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 14/129 (10%)
Query: 410 QAPVLVYIN--DVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVD--TNLGGEILYT 465
+ P+ + IN D+NDN P F ++ +PE + G V+ V A D D L G + Y
Sbjct: 89 ENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYR 148
Query: 466 AILGYKNSS----LELDAHTGD-ITIANGQQFDREEASEYKFQVEARDMQG---LGLRTV 517
+ ++ ++ TGD IT+A G DRE+ +Y ++A DM+G GL
Sbjct: 149 IVSQAPSTPSPNMFTINNETGDIITVAAG--LDREKVQQYTLIIQATDMEGNPTYGLSNT 206
Query: 518 VPLQLTILD 526
+T+ D
Sbjct: 207 ATAVITVTD 215
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 490 QQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRN 549
+ DRE + + + A D+ G + + + + ++D+NDN P F+ + + S+
Sbjct: 64 KPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKP 123
Query: 550 FSERTFIKATD-QDAEAPNNIVRYEIISGN----YDNKFSLHPETG 590
+ + A D D A N ++RY I+S N F+++ ETG
Sbjct: 124 GTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETG 169
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 11/117 (9%)
Query: 481 TGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFE 540
+GD+++ + DRE + Y+ +VE D+ G + V L ++++D NDN P+F + P+
Sbjct: 56 SGDVSVT--RPLDREAIANYQLEVEVTDLSGKIIDGPVRLDISVIDQNDNRPMFKEGPYV 113
Query: 541 FVLASDSRNFSERTFIKATDQDAEAP---NNIVRYEIISGN----YDNKFSLHPETG 590
+ S + T ++ T DA+ P N ++RY I+ N F + PE G
Sbjct: 114 GHVMEGSPTGT--TVMRMTAFDADDPSTDNALLRYNILKQTPTKPSPNMFYIDPEKG 168
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 9/106 (8%)
Query: 415 VYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDT-NLGGEILYTAILGYKNS 473
+ + D NDN P+F Y + E + G V+++ A D D + +L IL +
Sbjct: 95 ISVIDQNDNRPMFKEGPYVGHVMEGSPTGTTVMRMTAFDADDPSTDNALLRYNILKQTPT 154
Query: 474 S-----LELDAHTGDI-TIANGQQFDRE--EASEYKFQVEARDMQG 511
+D GDI T+ + DRE E +Y+ +EA+DM G
Sbjct: 155 KPSPNMFYIDPEKGDIVTVVSPVLLDRETMETPKYELVIEAKDMGG 200
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 414 LVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDT-NLGGEILYTAILGYKN 472
++ ++D+NDN P+F ++ +PE + G V +V A D D + G T + N
Sbjct: 91 IIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGN 150
Query: 473 SSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGL 512
+D +G I A DRE S Y+ V+A+D GL
Sbjct: 151 EYFTVD-DSGVIFTARA-DLDRESQSAYEIIVKAKDALGL 188
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 56/112 (50%), Gaps = 9/112 (8%)
Query: 472 NSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVP---LQLTILDVN 528
N+ ++ + GDI ++ DRE+ +EY+ D + R++ P + + D+N
Sbjct: 43 NTIFKVQGYDGDIYAF--ERLDREKKAEYELTAHIIDRRNN--RSLEPPSKFIIKVSDIN 98
Query: 529 DNAPIFVQTPFEFVLASDSRNFSERTFIKATDQD--AEAPNNIVRYEIISGN 578
DNAPIFVQ F + SR + T + A D D A + V Y+II GN
Sbjct: 99 DNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGN 150
>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I
pdb|3UBG|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
pdb|3UBG|B Chain B, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
Length = 316
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 108/273 (39%), Gaps = 31/273 (11%)
Query: 334 TQVTDDNMGKNGIFSLTLENNNGTFEI-----WPSVVERKAQFTIRVRNNKNLDYER--- 385
T+ D GK+ +F L E + TF+I W +V A VR K DYE
Sbjct: 12 TEADGDTEGKS-VFQLEKETDKETFKIRDDNPWVTVETNGA-----VRVKKKWDYEELGP 65
Query: 386 TRTLSFVIVAKEIXXXXXXXXXXXQAPVLVYINDVNDNPPVFTAT--LYTAKIPENATAG 443
+T+ F ++ + Q V++ + DVND PP F A + NA
Sbjct: 66 EKTIDFWVIITNMGHNAGIKYTDNQR-VIILVKDVNDEPPYFINRPLPMQAVVQLNAPPN 124
Query: 444 EKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQ 503
V ++A D DT+ I Y + E+D +G + F + EY
Sbjct: 125 TPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLD--MEYVLY 180
Query: 504 VEARDMQG----LGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFSERTFIKAT 559
V+A D G ++ +L+I+ AP F +E + + + S+ IKA
Sbjct: 181 VKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKA- 238
Query: 560 DQDAEAPNNIVRYEIIS-GNYDNKFSLHPETGV 591
+ +RY + + G F++ P +G+
Sbjct: 239 ---KSFADREIRYTLKAQGQGAGTFNIGPTSGI 268
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 6/109 (5%)
Query: 425 PVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYT-AILGYKNSSLELDAHTGD 483
P F Y A+IPEN ++ +KA EI YT G + + +G
Sbjct: 212 PQFYMPSYEAEIPENQKKDSDIISIKAKSFADR---EIRYTLKAQGQGAGTFNIGPTSGI 268
Query: 484 ITIANGQQF-DREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNA 531
+ +A F D + Y V A + G G T V L + + DVNDNA
Sbjct: 269 VKLAKELDFEDLRQPHVYSLIVTATEDSG-GFSTSVDLTIRVTDVNDNA 316
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/274 (24%), Positives = 109/274 (39%), Gaps = 33/274 (12%)
Query: 334 TQVTDDNMGKNGIFSLTLENNNGTFEI-----WPSVVERKAQFTIRVRNNKNLDYER--- 385
T+ D GK+ +F L E + TF+I W +V A VR K DYE
Sbjct: 17 TEADGDTEGKS-VFQLEKETDKETFKIRDDNPWVTVETNGA-----VRVKKKWDYEELGP 70
Query: 386 TRTLSFVIVAKEIXXXXXXXXXXXQAPVLVYINDVNDNPPVFTAT--LYTAKIPENATAG 443
+T+ F ++ + Q V++ + DVND PP F A + NA
Sbjct: 71 EKTIDFWVIITNMGHNAGIKYTDNQR-VIILVKDVNDEPPYFINRPLPMQAVVQLNAPPN 129
Query: 444 EKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQ 503
V ++A D DT+ I Y + E+D +G + F + EY
Sbjct: 130 TPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQLD--MEYVLY 185
Query: 504 VEARDMQG----LGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFSERTFIKAT 559
V+A D G ++ +L+I+ AP F +E + + + S+ IKA
Sbjct: 186 VKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAK 244
Query: 560 D-QDAEAPNNIVRYEIIS-GNYDNKFSLHPETGV 591
D E +RY + + G F++ P +G+
Sbjct: 245 SFADRE-----IRYTLKAQGQGAGTFNIGPTSGI 273
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 425 PVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYT-AILGYKNSSLELDAHTGD 483
P F Y A+IPEN ++ +KA EI YT G + + +G
Sbjct: 217 PQFYMPSYEAEIPENQKKDSDIISIKAKSF---ADREIRYTLKAQGQGAGTFNIGPTSGI 273
Query: 484 ITIANGQQF-DREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIF 534
+ +A F D + Y V A + G G T V L + + DVNDNAP F
Sbjct: 274 VKLAKELDFEDLRQPHVYSLIVTATEDSG-GFSTSVDLTIRVTDVNDNAPKF 324
>pdb|2V37|A Chain A, Solution Structure Of The N-Terminal Extracellular Domain
Of Human T-Cadherin
Length = 105
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 475 LELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAP 532
++ +TG +++ + DRE + Y+ VE D+ G L VPL++ ++D NDN P
Sbjct: 50 FRINENTGSVSVT--RTLDREVIAVYQLFVETTDVNGKTLEGPVPLEVIVIDQNDNRP 105
>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The
Calcium Bound State, Nmr, 20 Structures
Length = 146
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 413 VLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNL 458
+++ + D NDN P FT ++ + E A G V++V ATD D ++
Sbjct: 96 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDV 141
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%)
Query: 490 QQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRN 549
Q DRE ++Y A G + + + +T+ D NDN P F Q FE +A +
Sbjct: 66 QPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVP 125
Query: 550 FSERTFIKATDQD 562
+ + ATD D
Sbjct: 126 GTSVMKVSATDAD 138
>pdb|2YQG|A Chain A, Solution Structure Of The First Cadherin Domain From Human
Desmoglein-2
Length = 123
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 477 LDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQ 536
+ TG++ + + DREE + A D +G + + L++ +LD+NDN P+F Q
Sbjct: 65 FNKDTGELNVTS--ILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ 122
>pdb|3K6F|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1
pdb|3K6F|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1
Length = 100
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 472 NSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILD 526
+ ++ +TG +++ + DRE + Y+ VE D G L VPL++ ++D
Sbjct: 48 KGTFRINENTGSVSVT--RTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVID 100
>pdb|3K6D|A Chain A, Crystal Structure Of Xenopus Laevis T-Cadherin Ec1
Length = 99
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 475 LELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILD 526
+++ ++G++++ + DRE Y+ QVE D G + V L++ ++D
Sbjct: 50 FKINENSGEVSVT--KALDREAIPSYQLQVETTDENGKTIEGPVDLEILVID 99
>pdb|1NCH|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCH|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCG|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
Length = 110
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 490 QQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIF 534
+ DRE + + + A D+ G + + + + ++D+NDN P F
Sbjct: 66 KPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,387,090
Number of Sequences: 62578
Number of extensions: 749545
Number of successful extensions: 1707
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1557
Number of HSP's gapped (non-prelim): 129
length of query: 653
length of database: 14,973,337
effective HSP length: 105
effective length of query: 548
effective length of database: 8,402,647
effective search space: 4604650556
effective search space used: 4604650556
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)