Query psy1887
Match_columns 653
No_of_seqs 267 out of 2772
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 18:48:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1887.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1887hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q55_A EP-cadherin, C-cadherin 100.0 1.5E-67 5.1E-72 616.0 39.1 574 10-652 22-694 (880)
2 3q2w_A Cadherin-2; cell adhesi 100.0 2.6E-65 8.7E-70 573.1 47.9 444 31-592 6-502 (559)
3 3q2v_A Cadherin-1; cell adhesi 100.0 7.9E-64 2.7E-68 560.0 50.4 482 31-651 6-540 (550)
4 1l3w_A EP-cadherin, C-cadherin 100.0 2.9E-64 9.8E-69 562.6 38.1 484 29-650 10-543 (546)
5 1q55_A EP-cadherin, C-cadherin 100.0 2.1E-64 7.3E-69 589.4 34.3 474 94-615 25-596 (880)
6 3q2w_A Cadherin-2; cell adhesi 100.0 4.6E-59 1.6E-63 522.4 42.0 413 5-536 88-553 (559)
7 3q2v_A Cadherin-1; cell adhesi 100.0 7.4E-59 2.5E-63 519.7 41.2 407 6-537 89-544 (550)
8 1l3w_A EP-cadherin, C-cadherin 100.0 2.5E-59 8.7E-64 522.7 28.6 405 6-534 95-545 (546)
9 3ubh_A Neural-cadherin; cell a 100.0 3.8E-55 1.3E-59 474.0 45.3 331 229-619 54-399 (419)
10 3ubh_A Neural-cadherin; cell a 100.0 5.7E-49 1.9E-53 425.6 39.9 317 5-526 91-418 (419)
11 3ubf_A Neural-cadherin; cell a 100.0 1.4E-45 4.9E-50 384.2 38.2 263 223-531 44-316 (316)
12 2a62_A Cadherin-8; extracellul 100.0 2.4E-47 8.3E-52 397.1 23.7 298 114-525 6-322 (322)
13 2a62_A Cadherin-8; extracellul 100.0 9.1E-46 3.1E-50 385.2 18.4 278 312-619 5-297 (322)
14 3ubf_A Neural-cadherin; cell a 100.0 3.5E-42 1.2E-46 358.6 29.7 266 349-649 35-316 (316)
15 3mvs_A Cadherin-23, otocadheri 100.0 4.3E-38 1.5E-42 307.9 24.4 205 302-531 3-210 (210)
16 2x2u_A Proto-oncogene tyrosine 100.0 8.7E-40 3E-44 327.2 12.2 210 306-535 2-245 (246)
17 2a4e_A Cadherin-11; dimer, cal 100.0 4.3E-37 1.5E-41 301.1 26.1 201 312-533 6-215 (215)
18 2qvi_A Cadherin-2; beta barrel 100.0 8E-35 2.7E-39 285.4 20.8 195 313-526 6-215 (215)
19 3ppe_A Vascular endothelial ca 100.0 2.4E-33 8.3E-38 272.4 25.6 193 312-526 5-203 (203)
20 3qrb_A Cadherin-1; cell adhesi 100.0 1.8E-33 6.2E-38 275.9 23.8 193 313-526 6-213 (213)
21 3mvs_A Cadherin-23, otocadheri 100.0 7.7E-33 2.6E-37 270.7 24.0 207 101-424 3-210 (210)
22 3k5r_A Cadherin 13; mouse, str 100.0 8.8E-33 3E-37 272.0 24.4 195 313-526 7-218 (218)
23 3lnd_A CDH6 protein, cadherin 100.0 2.2E-33 7.6E-38 273.8 16.3 193 313-526 6-207 (207)
24 2x2u_A Proto-oncogene tyrosine 100.0 5.3E-34 1.8E-38 285.3 9.5 231 105-428 2-245 (246)
25 2a4e_A Cadherin-11; dimer, cal 100.0 2.5E-31 8.4E-36 260.2 24.2 201 114-426 7-215 (215)
26 4apx_B Protocadherin-15, otoca 100.0 5.9E-30 2E-34 254.3 22.2 202 311-526 21-237 (242)
27 2qvi_A Cadherin-2; beta barrel 100.0 5.4E-29 1.8E-33 243.9 17.8 200 433-644 6-215 (215)
28 3ppe_A Vascular endothelial ca 100.0 1.1E-27 3.8E-32 232.6 22.8 191 114-419 6-203 (203)
29 3qrb_A Cadherin-1; cell adhesi 100.0 1.1E-27 3.9E-32 234.6 22.5 195 114-419 6-213 (213)
30 3k5r_A Cadherin 13; mouse, str 100.0 2.2E-27 7.6E-32 233.4 21.2 196 114-419 7-218 (218)
31 3lnd_A CDH6 protein, cadherin 100.0 8.1E-28 2.8E-32 234.5 15.5 156 222-419 47-207 (207)
32 2yst_A Protocadherin-7; BH-PCD 99.9 5E-27 1.7E-31 207.7 9.5 116 415-532 2-119 (119)
33 4apx_B Protocadherin-15, otoca 99.9 1.3E-23 4.5E-28 208.6 22.8 162 223-419 65-237 (242)
34 2ee0_A Protocadherin-9; Ca dom 99.9 1.1E-24 3.8E-29 190.8 9.2 110 415-528 2-114 (114)
35 2yst_A Protocadherin-7; BH-PCD 99.9 3.6E-24 1.2E-28 189.3 9.3 114 295-425 2-119 (119)
36 2yqg_A Desmoglein-2, HDGC; cad 99.9 3.3E-22 1.1E-26 177.3 6.3 115 420-537 5-123 (123)
37 2ee0_A Protocadherin-9; Ca dom 99.9 9.2E-22 3.1E-26 172.2 8.8 108 295-421 2-114 (114)
38 1ncg_A N-cadherin; cell adhesi 99.8 7.2E-20 2.5E-24 159.0 9.1 99 431-534 6-110 (110)
39 2yqg_A Desmoglein-2, HDGC; cad 99.8 5.8E-20 2E-24 162.9 5.6 112 301-430 6-123 (123)
40 1wyj_A Protocadherin beta 14; 99.7 3.6E-19 1.2E-23 157.8 2.0 107 429-542 10-123 (125)
41 1ncg_A N-cadherin; cell adhesi 99.7 6.2E-18 2.1E-22 146.7 8.7 98 312-427 7-110 (110)
42 1zvn_A Mn-cadherin; strand dim 99.7 3.7E-17 1.3E-21 138.5 11.1 91 432-526 6-99 (99)
43 1zxk_A Cadherin-8; strand dime 99.7 5.3E-17 1.8E-21 137.3 10.5 91 432-526 5-98 (98)
44 1wyj_A Protocadherin beta 14; 99.7 3.1E-17 1E-21 145.4 3.6 105 310-435 11-123 (125)
45 3k6d_A T-cadherin; cell adhesi 99.6 4.8E-16 1.6E-20 131.9 10.3 88 433-526 6-99 (99)
46 3k6f_A T-cadherin; cell adhesi 99.6 1.5E-15 5E-20 129.2 11.4 88 433-526 7-100 (100)
47 3k6i_A T-cadherin; cell adhesi 99.6 2.1E-15 7.2E-20 128.0 12.4 88 433-526 6-99 (99)
48 2omz_B Epithelial-cadherin; le 99.6 1E-15 3.4E-20 131.4 8.8 90 433-527 10-105 (105)
49 1zvn_A Mn-cadherin; strand dim 99.6 1.4E-14 4.9E-19 122.5 10.4 90 312-419 6-99 (99)
50 1zxk_A Cadherin-8; strand dime 99.6 1.6E-14 5.4E-19 122.1 10.3 90 312-419 5-98 (98)
51 3k6d_A T-cadherin; cell adhesi 99.5 8.8E-14 3E-18 117.9 9.8 87 312-419 5-99 (99)
52 3k6i_A T-cadherin; cell adhesi 99.5 3.5E-13 1.2E-17 114.2 11.7 85 314-419 7-99 (99)
53 3k6f_A T-cadherin; cell adhesi 99.5 6.1E-13 2.1E-17 112.9 12.3 88 313-419 7-100 (100)
54 2omz_B Epithelial-cadherin; le 99.4 1.4E-13 4.8E-18 117.9 7.9 88 313-420 10-105 (105)
55 1wuz_A Pcdha4 protein, CNR-EC1 99.4 6.9E-14 2.3E-18 119.4 3.4 93 430-530 3-103 (103)
56 1wuz_A Pcdha4 protein, CNR-EC1 99.2 9.7E-12 3.3E-16 106.0 3.3 93 310-423 3-103 (103)
57 3rb5_A Na/Ca exchange protein; 91.2 11 0.00037 37.6 18.0 150 301-469 6-164 (298)
58 3rb5_A Na/Ca exchange protein; 88.5 8.3 0.00028 38.4 14.6 146 421-578 6-165 (298)
59 3pdd_A Glycoside hydrolase, fa 86.7 19 0.00066 33.1 17.6 116 386-526 60-180 (190)
60 3pdd_A Glycoside hydrolase, fa 86.0 20 0.00069 32.9 14.8 118 265-419 60-180 (190)
61 2yhg_A SDE_182CT, cellulose-bi 84.1 4.7 0.00016 42.2 10.3 94 419-524 329-436 (437)
62 1op4_A Neural-cadherin; beta s 81.5 8 0.00027 34.5 9.4 79 423-510 32-110 (159)
63 2yhg_A SDE_182CT, cellulose-bi 74.2 26 0.00089 36.6 12.1 31 384-418 407-437 (437)
64 1op4_A Neural-cadherin; beta s 73.7 9.3 0.00032 34.1 7.4 81 101-195 31-112 (159)
65 3ead_A Na/Ca exchange protein; 67.0 28 0.00096 30.1 9.1 47 422-471 2-48 (137)
66 3ead_A Na/Ca exchange protein; 63.3 43 0.0015 28.9 9.5 47 184-232 87-136 (137)
67 2yrl_A KIAA1837 protein; PKD d 63.0 29 0.00099 28.2 7.9 31 496-528 67-97 (102)
68 3pe9_A Fibronectin(III)-like m 55.4 81 0.0028 25.4 11.9 72 124-209 17-90 (98)
69 2yrl_A KIAA1837 protein; PKD d 52.1 29 0.00098 28.3 6.1 32 385-422 67-98 (102)
70 3us9_A Sodium/calcium exchange 47.3 2.2E+02 0.0074 28.0 20.2 142 426-578 13-183 (295)
71 2kpn_A Bacillolysin; solution 43.7 59 0.002 26.5 6.6 41 490-532 51-91 (103)
72 3gin_A Sodium/calcium exchange 42.4 90 0.0031 27.7 8.2 72 411-487 10-83 (160)
73 2y72_A Collagenase, collagenas 39.7 43 0.0015 26.1 5.1 29 178-206 56-84 (85)
74 2y72_A Collagenase, collagenas 36.0 63 0.0022 25.0 5.5 31 382-418 54-84 (85)
75 2kpn_A Bacillolysin; solution 35.8 69 0.0024 26.1 5.8 42 378-425 50-91 (103)
76 3us9_A Sodium/calcium exchange 35.5 3.3E+02 0.011 26.7 21.4 56 411-470 128-183 (295)
77 1u2c_A Dystroglycan; IG-like d 24.9 2.7E+02 0.0093 26.4 8.6 54 472-529 46-104 (246)
78 1k85_A Chitinase A1; fibronect 24.6 57 0.002 24.9 3.4 24 172-195 53-76 (88)
79 3pe9_A Fibronectin(III)-like m 23.5 2.8E+02 0.0097 22.1 10.7 72 443-526 17-88 (98)
80 2e7m_A Protein KIAA0319; PKD d 22.0 1.4E+02 0.0049 24.7 5.3 58 460-526 47-105 (113)
81 3klq_A Putative pilus anchorin 21.5 3.7E+02 0.013 23.2 8.1 96 408-516 4-100 (141)
No 1
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=100.00 E-value=1.5e-67 Score=616.05 Aligned_cols=574 Identities=18% Similarity=0.199 Sum_probs=387.1
Q ss_pred EEEEEEEeccCCCCcCCCCCceEEec-CCCCCCcEEEEEEEecCCCCCCceEEEEEecCCCCCcceEEEcCCCCCCCCc-
Q psy1887 10 EVVVVVDDVQDTPPIFINIQPVIQLA-PNLTMNDVLTKITAIDGDKGHPRTIKYGLVSEGHPMTVFFTINELTGPKMSP- 87 (653)
Q Consensus 10 ~v~I~V~DvNDn~P~F~~~~~~~~V~-E~~~~g~~i~~v~A~D~D~g~n~~i~ysl~~~~~~~~~~F~Id~~tG~~~~~- 87 (653)
...+.+.|+|||+|+|.+..|.++|+ |++++|+.|++|.|+|.|. |+.++|++.. + .|.|++ +|.+...
T Consensus 22 ~~~~~~~d~ndn~P~F~~~~y~~~v~~e~~~~Gt~V~~v~a~D~D~--n~~i~Y~~~~---~---~F~Id~-~G~i~~~~ 92 (880)
T 1q55_A 22 VVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTT--RKHGLYDVGD---S---RFRVLP-DGTVLVKR 92 (880)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred heeeecccccCCCCccCCCeEEEEechhhCCCCCEEEEEEEEeCCC--CceEEEEeCC---C---CEEECC-CceEEECC
Confidence 35677899999999999999999999 9999999999999999995 8889999842 2 799998 7986322
Q ss_pred -------cEEEEE------------EEEeee-------------cCCCceeccccC----------eEEEEeecCCC--C
Q psy1887 88 -------QVFLLV------------LMCYSV-------------VANYPVFDISTQ----------MRSLLIPASVK--L 123 (653)
Q Consensus 88 -------~~~~vv------------i~v~d~-------------Nd~~P~f~~~~~----------~~~~~v~E~~~--~ 123 (653)
+.+.|. +.|.++ |+++|.|....+ ...++|+||.+ .
T Consensus 93 ~Ld~e~~~~l~V~A~D~~~~~~~~~v~v~~v~~~~~~~~~~~~~~~~~p~f~~~~~~~~r~~r~~~~~~~~v~En~~~~~ 172 (880)
T 1q55_A 93 HVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPF 172 (880)
T ss_dssp ---------------------------------------------------------------CCCCCCEEEESSCCSSS
T ss_pred ccccccceEEEEEEEcCCCCeEEEEEEEEEecccccccccccccccCcccccccccccceeeccccccceEEeCCCCCCC
Confidence 122211 122223 344678876532 01589999998 6
Q ss_pred ceEEEEEEEecCCCCcceEEEecCC-----CceEEEEeeccCCCCCCeeEEEEEEcccc--CCCceEEEEEEEEECCCCC
Q psy1887 124 GTIIYRLRASDSDKDYPLTFDATDF-----GSYVVKIKSLPCSKNSSFCEANVYLDRVL--VPGQVFQFRIIVKDTRGDT 196 (653)
Q Consensus 124 gt~i~~v~a~D~D~~~~~~y~i~~~-----~~~~f~i~~~~~~~~~~~~~g~i~l~~~l--e~~~~~~~~v~v~d~~g~~ 196 (653)
+..|+++.+ |.|.+..++|+|... ....|.|+.. +|.|++.++| |....|.+.|+|.|.+|..
T Consensus 173 ~~~v~~v~~-d~d~~~~v~Ysi~~~~~~~~~~~~F~Id~~---------tG~l~~~~~LDrE~~~~y~l~v~A~D~g~~~ 242 (880)
T 1q55_A 173 PKRLVQIKS-NKDRFNKVYYSITGQGADNPPQGVFRIEWE---------TGWMLVTRPLDREEYDKYVLSSHAVSENGSP 242 (880)
T ss_dssp CEEEEECCC-SGGGSSCEEEEEEEBTTTBSSTTSEEECTT---------TCEEEECSCCCTTTCCEEEEEEEEEESSSCB
T ss_pred CeEEEEEee-CCCCCceEEEEEECCCCCCCcCCEEEEECC---------cCEEEECCccCccccCccEEEEEEEECCCCc
Confidence 778888875 667677999999332 2357999863 6899999999 4567899999999987764
Q ss_pred --eeeeEEEEEEecCCCCCCCCCCCCeEEEEeCCC--cEEEE-eecCC---C-----CcceEEEEE--------------
Q psy1887 197 --TTVPTSLTATDAALNINAQFPHIPGVIVVPEVL--GTYLL-WRHLS---G-----PKNMYLMRE-------------- 249 (653)
Q Consensus 197 --~~~~~~i~v~~~~~~~~p~~~~~~~~~~i~e~~--G~i~~-~~~lD---e-----~~~~y~l~~-------------- 249 (653)
....+.|+|.+.| |++|.|....+.+.|+|++ |.... ..+.| + ..-.|+|..
T Consensus 243 ~~~~~~v~I~V~DvN-Dn~P~F~~~~y~~~V~En~~~Gt~V~~v~AtD~D~g~~~~N~~v~Ysi~~~~~~~~~~~~F~Id 321 (880)
T 1q55_A 243 VEEPMEITINVIDQN-DNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTIN 321 (880)
T ss_dssp CSCCEEEEEEEECCS-CCCCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEEC
T ss_pred eeeeEEEEEEEEecC-CCCCCccCCcEEEEEeCCCCCCceeEEEEEEcCCCCCCCcCcEEEEEEcCCCCCcccCCeEEEc
Confidence 4466778888887 7899999999999999997 65443 34444 3 123566642
Q ss_pred -----EEe-eCCccccceecCCCcEEEEEEEEEecccCCCCCCCeEEEEEEEEEEccCCCCCeecCCceEEEEeCCCCCC
Q psy1887 250 -----IRL-SKPYRELHTVASGQPVILMVLAEEERKDLNEPSPQSSTATIALVFDQAINTPPYFDTVQYITHLDENSPQG 323 (653)
Q Consensus 250 -----~~~-~~~ld~~~~~~~~~~~~l~V~A~d~~~d~~~~~~~s~~~~v~i~V~dvNd~~P~f~~~~~~~~v~En~~~g 323 (653)
+.+ .++||+|. ...|.|+|+|+|. | .+++++++.|+|.|.|+|||+|.|....|.++|+|| ++|
T Consensus 322 ~~tG~I~~~~~~LDrE~----~~~y~l~V~A~D~----g-~~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En-~~g 391 (880)
T 1q55_A 322 RETGVISLIGTGLDREK----FPEYTLTVQATDL----E-GAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIG 391 (880)
T ss_dssp TTTCEEEECSCCCCTTT----CCEEEEEEEEEHH----H-HTSCEEECCEEEEEECCCCCCCCBSCSEEEEEEESS-SCC
T ss_pred cCCccEEEecccCCHHH----cceeEEEEEEEEC----C-CCCccceeEEEEEEEeccCCCCCccccceEEEeecC-CCC
Confidence 334 36788875 6789999999873 2 357899999999999999999999999999999999 999
Q ss_pred cEEEeeeceeeEEeeCC--CCcceEEEEEEe-cCCCcEEEc--c--cceeeeeeEEEEEecCCCCCccCCCeEEEEEEEE
Q psy1887 324 TALIFAESFHTQVTDDN--MGKNGIFSLTLE-NNNGTFEIW--P--SVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAK 396 (653)
Q Consensus 324 t~v~~v~~~~~~a~D~D--~g~n~~~~~~~~-~~~~~F~I~--~--~tg~~~~~~~i~l~~~~~LD~E~~~~~~l~V~a~ 396 (653)
+.|++ +.|+|+| .|.|+.++|++. +..+.|.|+ + .+|. |++.++||||+...|.|+|+|+
T Consensus 392 t~V~~-----v~A~D~D~~~g~n~~v~Ysi~~~~~~~F~I~~d~~~~~G~--------i~~~~~LD~E~~~~y~l~V~A~ 458 (880)
T 1q55_A 392 FEVQR-----LSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGI--------LTTAKGLDFELRKQYVLQITVE 458 (880)
T ss_dssp CEEEE-----ECBCCCSCTTSTTSCEECCBSCCTTSCEEEEECTTTCCEE--------EEESSCCCCSSCCCEEEEECCE
T ss_pred cEEEE-----EEEECCCCCCCCCceEEEEEecCCCceEEEEecCCCceEE--------EecccCCCcccCCcEEEEEEEE
Confidence 99998 4999999 778888888885 456799995 3 4565 7789999999999999999999
Q ss_pred ECCCCCCCCCceEEEEEEEEEeecCCCCCeecccceEEEeeCCCCCCcEEEEEEEeeCCCCCCceEEEEEEcCCCCcceE
Q psy1887 397 EISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLE 476 (653)
Q Consensus 397 D~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~gt~v~~v~a~D~D~g~n~~i~y~i~~~~~~~~F~ 476 (653)
|.+..+ .+.++++++|+|+|.|+|| +|.|.+..|.+.|+|++++|+.|+++.|+|+|.|.|++++|+|..+ ..++|.
T Consensus 459 D~~~~~-~~~~sst~tV~I~V~DvND-~P~f~~~~y~~~V~En~~~Gt~V~~v~A~D~D~g~n~~v~Ysi~~~-~~~~F~ 535 (880)
T 1q55_A 459 NAEPFS-VPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGND-PARWLT 535 (880)
T ss_dssp ESSCCS-SCCCCCCEEEEEEEECCCC-CCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCCEEEEECCC-SSCCCE
T ss_pred ECCCCC-CCCcceeEEEEEEEEeCCC-CCEEecCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCcEEEEECCC-CCCCEE
Confidence 987321 2458899999999999999 9999999999999999999999999999999999999999998654 567999
Q ss_pred EeCCCCeEEEEcCccCCccCc----cEEEEEEEEEECCCCCceEEEEEEEEEEecCCCCCeEeecCcEEEEecCCCCCeE
Q psy1887 477 LDAHTGDITIANGQQFDREEA----SEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFSE 552 (653)
Q Consensus 477 Id~~tG~i~~~~~~~lD~E~~----~~~~l~V~a~D~g~~~~~~~~~v~I~V~DvNDn~P~f~~~~y~~~v~e~~~~g~~ 552 (653)
|++.+|.|++. +.||||.. ..|.|+|.|+|.|.|+++++++|+|+|.|+|||+|+|.+. .+.|+|+.++|+
T Consensus 536 Id~~tG~I~~~--~~LDrE~~~~~~~~y~l~V~A~D~g~p~~sst~tv~I~V~DvNDn~P~f~~~--~~~v~E~~~~g~- 610 (880)
T 1q55_A 536 VNKDNGIVTGN--GNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPR--VFTMCDQNPEPQ- 610 (880)
T ss_dssp EETTTTEEEEC--SCCCTTSSSCCSSCCEEEEEEEECSSSCCCCCEEEECCBCCCCCSCCCBSCC--CEEECSSSCCCE-
T ss_pred EeCCccEEEEC--CccCcccccCCCCEEEEEEEEEECCCCCcEeEEEEEEEEEeCCCCCCCccCc--ceEEecCCCCCe-
Confidence 99999999998 89999997 8999999999999999999999999999999999999854 688999999997
Q ss_pred EEEEEEEeCCCCCCCCe-EEEEEEeCCCCCcEEEEcCCCccceeeEEEEEEeCC-CCCccceEEEecCCccchhccchhh
Q psy1887 553 RTFIKATDQDAEAPNNI-VRYEIISGNYDNKFSLHPETGVPHKWSTTQVRIYPP-DSAVRNIKFLVPHSQAQLERKQLED 630 (653)
Q Consensus 553 v~~v~A~D~D~~~~n~~-i~Y~i~~~~~~~~F~Id~~tG~p~~~~~~~v~i~~~-~~~~~~~~~~v~~~~~~~~~~~~~~ 630 (653)
+ |.|+|+|.+ .|+. ++|+|..++ .+.|.| ..+|.- +.+..... ......+.+.|-......
T Consensus 611 v--v~A~D~D~~-~n~~~~~ysl~~~~-~~~f~i-~~~g~~-----~~l~~~~~d~~~~~~y~l~V~a~D~g~------- 673 (880)
T 1q55_A 611 V--LTISDADIP-PNTYPYKVSLSHGS-DLTWKA-ELDSKG-----TSMLLSPTQQLKKGDYSIYVLLSDAQN------- 673 (880)
T ss_dssp E--EEBCCSSCT-TTTCCCCCBCCSCS-SSSCBC-CBCTTS-----SEEEEBCSSCCCSSCBCCEEECCSSSC-------
T ss_pred E--EEEecCCCC-CCCceEEEEECCCC-CCCeEE-Ecccce-----eEEEeccCccccCCEEEEEEEEEECCc-------
Confidence 3 999999987 6775 899997654 457888 555531 23333332 223344555553331111
Q ss_pred eeeeecCcEEEEEecCCCCCCC
Q psy1887 631 ILSEMSGGRVSVVNTRPHYEDY 652 (653)
Q Consensus 631 ~l~~~~~~~v~~~d~~~~~~~~ 652 (653)
+.+....+|+|.|.+|+.|.+
T Consensus 674 -lsst~tv~V~V~d~nd~~~~~ 694 (880)
T 1q55_A 674 -NPQLTVVNATVCSCEGKAIKC 694 (880)
T ss_dssp -CCEEEECCEEECSCSSSCCCC
T ss_pred -ceeeEEEEEEEEecCCCcccc
Confidence 455556789999999987765
No 2
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}
Probab=100.00 E-value=2.6e-65 Score=573.12 Aligned_cols=444 Identities=21% Similarity=0.265 Sum_probs=370.1
Q ss_pred eEEecCCCCCCcEEEEEEEecCCCCCCceEEEEEecCCCC--CcceEEEcCCCCCC----------CCc-----------
Q psy1887 31 VIQLAPNLTMNDVLTKITAIDGDKGHPRTIKYGLVSEGHP--MTVFFTINELTGPK----------MSP----------- 87 (653)
Q Consensus 31 ~~~V~E~~~~g~~i~~v~A~D~D~g~n~~i~ysl~~~~~~--~~~~F~Id~~tG~~----------~~~----------- 87 (653)
.++|+||.+ |.....+.+.+.|.+.|+.|+|+|.+.+.. ..++|.|++.||+| ...
T Consensus 6 ~~~v~En~~-g~~~~~i~~~~~D~~~n~~i~Ysi~~~~~~~~~~~~F~id~~tG~l~~~~~LDrE~~~~y~l~v~a~D~g 84 (559)
T 3q2w_A 6 PINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDIN 84 (559)
T ss_dssp CEEEESSCC-CCSSEEEEECCCGGGGTSCEEEEEESBTTTBSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEETT
T ss_pred cEEeeCCCC-CCCCeEEEEEeeCCCCCcEEEEEEECCCCCCCCCceEEEeCCceEEEECCccCCCCCceEEEEEEEEECC
Confidence 479999997 777777788888888899999999875432 13589999999995 111
Q ss_pred -----cEEEEEEEEeeecCCCceeccccCeEEEEeecCCCCceEEEEEEEecCCCC----cceEEEecCCCceEEEEeec
Q psy1887 88 -----QVFLLVLMCYSVVANYPVFDISTQMRSLLIPASVKLGTIIYRLRASDSDKD----YPLTFDATDFGSYVVKIKSL 158 (653)
Q Consensus 88 -----~~~~vvi~v~d~Nd~~P~f~~~~~~~~~~v~E~~~~gt~i~~v~a~D~D~~----~~~~y~i~~~~~~~f~i~~~ 158 (653)
....+.|.|.|+|||+|.|....| .++|+|++++|+.|+++.|+|+|.+ ..++|+|....
T Consensus 85 ~~~~~~~~~v~I~V~DvNDn~P~F~~~~y--~~~V~En~~~Gt~v~~v~A~D~D~g~~~n~~v~Ysi~~~~--------- 153 (559)
T 3q2w_A 85 GNQVENPIDIVINVIDMNDNRPEFLHQVW--NGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQA--------- 153 (559)
T ss_dssp SCEEEEEEEEEEEEECCCCCCCEESCSEE--EEEEETTCCTTCEEEECCEECSSCTTSGGGCCEEEEEEEE---------
T ss_pred CCccceeEEEEEEEEeCCCCCCccCCCee--EEEEeCCCCCCcEEEEEEEEcCCCCCCCceEEEEEEecCC---------
Confidence 123466888999999999999876 9999999999999999999999975 45777661100
Q ss_pred cCCCCCCeeEEEEEEccccCCCceEEEEEEEEECCCCCeeeeEEEEEEecCCCCCCCCCCCCeEEEEeCCCcEEEEee-c
Q psy1887 159 PCSKNSSFCEANVYLDRVLVPGQVFQFRIIVKDTRGDTTTVPTSLTATDAALNINAQFPHIPGVIVVPEVLGTYLLWR-H 237 (653)
Q Consensus 159 ~~~~~~~~~~g~i~l~~~le~~~~~~~~v~v~d~~g~~~~~~~~i~v~~~~~~~~p~~~~~~~~~~i~e~~G~i~~~~-~ 237 (653)
.. ......|.|++.+|.|.+.+ .
T Consensus 154 ---------------------------------~~-----------------------~~~~~~F~Id~~tG~i~~~~~~ 177 (559)
T 3q2w_A 154 ---------------------------------PS-----------------------TPSPNMFTINNETGDIITVAAG 177 (559)
T ss_dssp ---------------------------------SC-----------------------CSCTTCEEECTTTCEEEECCSC
T ss_pred ---------------------------------CC-----------------------CCCcceEEEeCCceEEEEEecc
Confidence 00 01123488999999999887 8
Q ss_pred CC-CCcceEEEEEEEeeCCccccceecCCCcEEEEEEEEEecccCCCC--CCCeEEEEEEEEEEccCCCCCeecCCceEE
Q psy1887 238 LS-GPKNMYLMREIRLSKPYRELHTVASGQPVILMVLAEEERKDLNEP--SPQSSTATIALVFDQAINTPPYFDTVQYIT 314 (653)
Q Consensus 238 lD-e~~~~y~l~~~~~~~~ld~~~~~~~~~~~~l~V~A~d~~~d~~~~--~~~s~~~~v~i~V~dvNd~~P~f~~~~~~~ 314 (653)
|| |....|.|.+ +|+|. ++. +++++++.|+|.|.|+|||+|.|....|.+
T Consensus 178 LD~E~~~~y~l~V-----------------------~A~D~----~g~p~~~~s~t~~v~I~V~DvNDn~P~f~~~~y~~ 230 (559)
T 3q2w_A 178 LDREKVQQYTLII-----------------------QATDM----EGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYG 230 (559)
T ss_dssp CCTTTCCEEEEEE-----------------------EEEHH----HHCTTTCCEEEEEEEEEEECCSCSCCEESSSEEEE
T ss_pred CCcccCCEEEEEE-----------------------EEEEC----CCCCCCCccceEEEEEEEEeCCCCCCcccccccee
Confidence 99 8877777766 88762 232 458999999999999999999999999999
Q ss_pred EEeCCCCCCcEEEeeeceeeEEeeCCCCc--ceEEEEEE--ecCCCcEEE----cccceeeeeeEEEEEecCCCCCccCC
Q psy1887 315 HLDENSPQGTALIFAESFHTQVTDDNMGK--NGIFSLTL--ENNNGTFEI----WPSVVERKAQFTIRVRNNKNLDYERT 386 (653)
Q Consensus 315 ~v~En~~~gt~v~~v~~~~~~a~D~D~g~--n~~~~~~~--~~~~~~F~I----~~~tg~~~~~~~i~l~~~~~LD~E~~ 386 (653)
+|+|+. +|+.|+. +.|+|+|.|. |+.++|++ ++..+.|.| +..+|. |++.++||||+.
T Consensus 231 ~V~En~-~g~~v~~-----v~a~D~D~~~~~n~~~~y~i~~g~~~~~F~I~~~~~~~~G~--------i~~~~~LD~E~~ 296 (559)
T 3q2w_A 231 EVPENR-VDVIVAN-----LTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGL--------VTVVKPIDFETN 296 (559)
T ss_dssp EEESSC-SSEEEEE-----EEEECCSCTTSTTTSBCCEEEESCTTCCEEEEECTTTCEEE--------EEECSCCCTTTC
T ss_pred EecCCC-CCcEEEE-----EEEEcCCCCCCCceeEEEEEecCCCCCceEEEecCCCCcEE--------EEeCCCCCCccC
Confidence 999997 8999998 5999999986 44444444 566789999 467776 788999999999
Q ss_pred CeEEEEEEEEECCCC--CCCCCceEEEEEEEEEeecCCCCCeecccceEEEeeCCCCCCcEEEEEEEeeCCCCCCceEEE
Q psy1887 387 RTLSFVIVAKEISSD--SSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILY 464 (653)
Q Consensus 387 ~~~~l~V~a~D~~~~--~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~gt~v~~v~a~D~D~g~n~~i~y 464 (653)
..|.|+|+|+|.+.. +..+++++++.|+|+|+|+|| +|.|....|.+.|.|+.++|+.|+++.|+|+|.|.|++++|
T Consensus 297 ~~y~l~V~A~D~~~~~~g~~~~~~s~~~v~I~V~DvND-~P~f~~~~~~~~v~En~~~g~~v~~v~A~D~D~g~n~~i~Y 375 (559)
T 3q2w_A 297 RMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNE-NPYFAPNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRY 375 (559)
T ss_dssp SEEEEEEECCBSSCCCTTCCCCGGGEEEEEEEEECCCC-CCEESSSEEEEEEESCCCTTCEEEECCEECSCSSSCCCEEE
T ss_pred ceEEEEEEEEcCCccccCCCCCCceEEEEEEEEEeCCC-CCcccccceEEEEeCCCCCCCEEEEEEEECCCCCCCCceEE
Confidence 999999999997531 224678999999999999999 69999999999999999999999999999999999999999
Q ss_pred EEEcCCCCcceEEeCCCCeEEEEcCccCCccCc----cEEEEEEEEEECCCCCceEEEEEEEEEEecCCCCCeEeecCcE
Q psy1887 465 TAILGYKNSSLELDAHTGDITIANGQQFDREEA----SEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFE 540 (653)
Q Consensus 465 ~i~~~~~~~~F~Id~~tG~i~~~~~~~lD~E~~----~~~~l~V~a~D~g~~~~~~~~~v~I~V~DvNDn~P~f~~~~y~ 540 (653)
+|..+ ..++|.|++.+|.|++. +.||||.. ..|.|+|.|+|+|.|+++++++|+|+|+|+|||+|+|.+..|
T Consensus 376 si~~~-~~~~f~Id~~tG~i~~~--~~lDrE~~~~~~~~y~l~V~A~D~g~p~~ss~~~v~I~V~DvNDn~P~f~~~~~- 451 (559)
T 3q2w_A 376 TKLSD-PANWLKIDPVNGQITTI--AVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEA- 451 (559)
T ss_dssp EEEEC-TTCCEEECTTTCEEEES--SCCCSSSTTSCSSEEEEEEEEEECSSSCCEEEEEEEEEEECCSCCCCEESCTTC-
T ss_pred EEccC-CccceEecCCceEEEEc--cccCcccccccCCEEEEEEEEEcCCCCcceEEEEEEEEEEEccCCCCcccCCce-
Confidence 98764 55799999999999998 89999986 899999999999999999999999999999999999997654
Q ss_pred EEEecCCCCCeEEEEEEEEeCCCCCCCC-eEEEEEEeC--CCCCcEEEEcCCCcc
Q psy1887 541 FVLASDSRNFSERTFIKATDQDAEAPNN-IVRYEIISG--NYDNKFSLHPETGVP 592 (653)
Q Consensus 541 ~~v~e~~~~g~~v~~v~A~D~D~~~~n~-~i~Y~i~~~--~~~~~F~Id~~tG~p 592 (653)
.+.|+ ++..+++|.|+|+|.+ .|+ +++|+|... +..++|+|++.+|..
T Consensus 452 -~v~e~--~~~~v~~v~A~D~D~~-~n~~~~~ysl~~~~~~~~~~f~i~~~~G~~ 502 (559)
T 3q2w_A 452 -ETCET--PEPNSINITALDYDID-PNAGPFAFDLPLSPVTIKRNWTINRLNGDF 502 (559)
T ss_dssp -CCCSC--CCTTCEEECEECSCCT-TSSSSCEEECCSSSHHHHHHEEEEECSSSC
T ss_pred -EEeec--CCCcEEEEEEEcCCCC-CCCCCEEEEEcCCCCccCCCeEEEecCCCE
Confidence 56788 4556789999999987 465 899999753 235789999988863
No 3
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}
Probab=100.00 E-value=7.9e-64 Score=560.00 Aligned_cols=482 Identities=21% Similarity=0.257 Sum_probs=386.4
Q ss_pred eEEecCCCC--CCcEEEEEEEecCCCCCCceEEEEEecCCCC--CcceEEEcCCCCCC----------C-----------
Q psy1887 31 VIQLAPNLT--MNDVLTKITAIDGDKGHPRTIKYGLVSEGHP--MTVFFTINELTGPK----------M----------- 85 (653)
Q Consensus 31 ~~~V~E~~~--~g~~i~~v~A~D~D~g~n~~i~ysl~~~~~~--~~~~F~Id~~tG~~----------~----------- 85 (653)
.++|+||.+ .+..|+++.| |.|. |+.|+|+|.+.+.. ..++|.|++.+|.| .
T Consensus 6 ~~~v~En~~~~~~~~v~~v~a-d~d~--~~~v~Ysi~~~~~~~~~~~~F~Id~~tG~l~~~~~LDrE~~~~y~l~v~a~d 82 (550)
T 3q2v_A 6 PISCPENEKGEFPKNLVQIKS-NRDK--ETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVS 82 (550)
T ss_dssp CEEEETTCCSSSSEEEEECEE-GGGG--TSCEEEEEESBTTTBSSCSSEEECTTTCEEEECSCCCTTTCSEEEEEEEEEE
T ss_pred CEEEeCCCCCCcCeEEEEEec-CCCC--CceEEEEEECCCCCCCCCceEEEeCCceEEEECCccCcccCCeeEEEEEEEe
Confidence 479999994 6788999999 7776 88999999875421 23589999999985 1
Q ss_pred -----CccEEEEEEEEeeecCCCceeccccCeEEEEeecCCCCceEEEEEEEecCCCC-----cceEEEecCCCceEEEE
Q psy1887 86 -----SPQVFLLVLMCYSVVANYPVFDISTQMRSLLIPASVKLGTIIYRLRASDSDKD-----YPLTFDATDFGSYVVKI 155 (653)
Q Consensus 86 -----~~~~~~vvi~v~d~Nd~~P~f~~~~~~~~~~v~E~~~~gt~i~~v~a~D~D~~-----~~~~y~i~~~~~~~f~i 155 (653)
......+.|.|.|+|||+|.|....| .++|+|++++|+.|+++.|+|+|.+ ..++|+|...
T Consensus 83 ~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y--~~~V~E~~~~Gt~v~~v~A~D~D~g~~~~N~~i~Ysi~~~------- 153 (550)
T 3q2v_A 83 SNGEAVEDPMEIVITVTDQNDNRPEFTQEVF--EGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQ------- 153 (550)
T ss_dssp TTSCBCSCCEEEEEEEECCSCCCCCBSCSEE--EEEEETTCCTTCEEEECCBCCCSCTTTCGGGCCEEEEEEE-------
T ss_pred CCCCcccceEEEEEEEEecCCCCCccCCCce--EEEEeCCCCCCCEEEEEEEEeCCCCCCCcceEEEEEEecC-------
Confidence 11234567889999999999999876 9999999999999999999999986 4677777110
Q ss_pred eeccCCCCCCeeEEEEEEccccCCCceEEEEEEEEECCCCCeeeeEEEEEEecCCCCCCCCCCCCeEEEEeCCCcEEEEe
Q psy1887 156 KSLPCSKNSSFCEANVYLDRVLVPGQVFQFRIIVKDTRGDTTTVPTSLTATDAALNINAQFPHIPGVIVVPEVLGTYLLW 235 (653)
Q Consensus 156 ~~~~~~~~~~~~~g~i~l~~~le~~~~~~~~v~v~d~~g~~~~~~~~i~v~~~~~~~~p~~~~~~~~~~i~e~~G~i~~~ 235 (653)
+.. ......|.|++.+|.|.+.
T Consensus 154 -----------------------------------~~~-----------------------~~~~~~F~id~~tG~i~~~ 175 (550)
T 3q2v_A 154 -----------------------------------DPE-----------------------LPHKNMFTVNRDTGVISVL 175 (550)
T ss_dssp -----------------------------------ESC-----------------------CSSSCSEEECTTTCEEEEC
T ss_pred -----------------------------------CCC-----------------------CCcCCceEEcCCCeEEEEc
Confidence 000 0012348888899999874
Q ss_pred -ecCC-CCcceEEEEEEEeeCCccccceecCCCcEEEEEEEEEecccCCCCCCCeEEEEEEEEEEccCCCCCeecCCceE
Q psy1887 236 -RHLS-GPKNMYLMREIRLSKPYRELHTVASGQPVILMVLAEEERKDLNEPSPQSSTATIALVFDQAINTPPYFDTVQYI 313 (653)
Q Consensus 236 -~~lD-e~~~~y~l~~~~~~~~ld~~~~~~~~~~~~l~V~A~d~~~d~~~~~~~s~~~~v~i~V~dvNd~~P~f~~~~~~ 313 (653)
+.|| |....|.|.+ +|+| ++.+++++++.|+|.|.|+|||+|.|....|.
T Consensus 176 ~~~LDrE~~~~y~l~V-----------------------~A~D-----~g~~~~s~t~~v~I~V~DvNDn~P~F~~~~y~ 227 (550)
T 3q2v_A 176 TSGLDRESYPTYTLVV-----------------------QAAD-----LQGEGLSTTAKAVITVKDINDNAPVFNPSTYQ 227 (550)
T ss_dssp SSCCCTTTCSEEEEEE-----------------------EEES-----GGGTSCCCEEEEEEEEECCSCSCCEESSSEEE
T ss_pred cCCCCcccCcEEEEEE-----------------------EEEc-----CCCCCeeEEEEEEEEecccCCCCCEEecceeE
Confidence 7899 8877777666 8876 22457899999999999999999999999999
Q ss_pred EEEeCCCCCCcEEEeeeceeeEEeeCCCCcce--EEEEEEe-cCCCcEEEc----ccceeeeeeEEEEEecCCCCCccCC
Q psy1887 314 THLDENSPQGTALIFAESFHTQVTDDNMGKNG--IFSLTLE-NNNGTFEIW----PSVVERKAQFTIRVRNNKNLDYERT 386 (653)
Q Consensus 314 ~~v~En~~~gt~v~~v~~~~~~a~D~D~g~n~--~~~~~~~-~~~~~F~I~----~~tg~~~~~~~i~l~~~~~LD~E~~ 386 (653)
++|+|| +.|+.|++ +.|+|+|.|.++ .++|++. +..+.|.|+ ..+|. |++.++||||..
T Consensus 228 ~~V~En-~~g~~v~~-----v~a~D~D~~~n~~~~~~ysi~~~~~~~F~i~~d~~~~tG~--------i~~~~~LD~E~~ 293 (550)
T 3q2v_A 228 GQVPEN-EVNARIAT-----LKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGI--------LKTAKGLDFEAK 293 (550)
T ss_dssp EEEESS-CSSCCCEE-----ECEECCSCTTSTTTCEEEEESSCSSCCEEEEECTTTCCEE--------EEESSCCCTTTC
T ss_pred EEEecC-CCCCEEEE-----EEEEECCCCCCCcEEEEEEEEeCCCCcEEEEecCCCccEE--------EEecccCCcccc
Confidence 999999 99999998 499999999876 4557774 456789998 67776 788999999999
Q ss_pred CeEEEEEEEEECCCCCCCCCceEEEEEEEEEeecCCCCCeecccceEEEeeCCCCCCcEEEEEEEeeCCCCCCceEEEEE
Q psy1887 387 RTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTA 466 (653)
Q Consensus 387 ~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~gt~v~~v~a~D~D~g~n~~i~y~i 466 (653)
..|.|+|+|+|.+.. ..+.+++++.|+|+|+|+|| +|.|....|.+.|+|++++|+.|+++.|+|+|.|.|++++|+|
T Consensus 294 ~~y~l~V~a~D~~~~-~~~~~~~~~~v~I~V~DvND-~P~f~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g~n~~i~y~i 371 (550)
T 3q2v_A 294 QQYILHVRVENEEPF-EGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKITYRI 371 (550)
T ss_dssp SEEEEEEEEEESSCC-CSSCCCEEEEEEEEEECCCC-CCEESSSSCEEEEETTCCSSCEEEECCEECCCCSTTCCCEEEE
T ss_pred ceEEEEEEEEeCCCC-CCCccceEEEEEEEEEecCC-CCeEcCcceEEEEecCCCCCCEEEEEeCCCCCCCCCCCEEEEE
Confidence 999999999998721 12457899999999999999 9999999999999999999999999999999999999999998
Q ss_pred EcCCCCcceEEeCCCCeEEEEcCccCCccCc-----cEEEEEEEEEECCCCCceEEEEEEEEEEecCCCCCeEeecCcEE
Q psy1887 467 ILGYKNSSLELDAHTGDITIANGQQFDREEA-----SEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEF 541 (653)
Q Consensus 467 ~~~~~~~~F~Id~~tG~i~~~~~~~lD~E~~-----~~~~l~V~a~D~g~~~~~~~~~v~I~V~DvNDn~P~f~~~~y~~ 541 (653)
.. +..++|.|++.+|.|++. +.||||.. ..|.|+|.|+|+|.|+++++++|+|+|.|+|||+|+|.+ |..
T Consensus 372 ~~-~~~~~f~id~~tG~i~~~--~~lDrE~~~~~~~~~y~l~V~A~D~g~p~~s~~~~v~I~V~DvNDn~P~~~~--~~~ 446 (550)
T 3q2v_A 372 WR-DTANWLEINPETGAIFTR--AEMDREDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEP--RNM 446 (550)
T ss_dssp EE-CTTCCEEECTTTCEEEEC--SCCCTTCTTTCCSSEEEEEEEEECCSSSCCCEEEEEEEEEECCCCCCCEESC--SSC
T ss_pred ec-CCCCcEEEeCCCcEEEEC--CccCcccccccCCCEEEEEEEEEeCCCCcceeEEEEEEEEEeCCCCCCcCcC--ccc
Confidence 65 456799999999999998 89999998 999999999999999999999999999999999999985 577
Q ss_pred EEecCCCCCeEEEEEEEEeCCCCCCCC-eEEEEEEeCCCCCcEEEE--cCCCccceeeEEEEEEeCCCC-CccceEEEec
Q psy1887 542 VLASDSRNFSERTFIKATDQDAEAPNN-IVRYEIISGNYDNKFSLH--PETGVPHKWSTTQVRIYPPDS-AVRNIKFLVP 617 (653)
Q Consensus 542 ~v~e~~~~g~~v~~v~A~D~D~~~~n~-~i~Y~i~~~~~~~~F~Id--~~tG~p~~~~~~~v~i~~~~~-~~~~~~~~v~ 617 (653)
.+.|+.+.|.. |.|+|+|.+ .|+ .++|+|.+++.. .|.|. ..+|... .+...++ ....+.+.|.
T Consensus 447 ~v~e~~~~~~~---v~A~D~D~~-~n~~~~~~~l~~~~~~-~~~~~~~~~~g~~~-------~~~~~~~~~~~~y~l~V~ 514 (550)
T 3q2v_A 447 QFCQRNPQPHI---ITILDPDLP-PNTSPFTAELTHGASV-NWTIEYNDAAQESL-------ILQPRKDLEIGEYKIHLK 514 (550)
T ss_dssp EEESSSCCCEE---EEEECCSCT-TSSSSCCCEEEECCSS-SCEEECCSTTSSEE-------EEECSCC----CEECEEE
T ss_pred ceeecCCCcEE---EEEECCCCC-CCCCCEEEEECCCCCC-CeEEEEecCCCcEE-------EEEecccCCCceEEEEEE
Confidence 89999987754 999999987 566 699999876543 45554 4346432 1222221 2355555554
Q ss_pred CCccchhccchhheeeeecCcEEEEEecCCCCCC
Q psy1887 618 HSQAQLERKQLEDILSEMSGGRVSVVNTRPHYED 651 (653)
Q Consensus 618 ~~~~~~~~~~~~~~l~~~~~~~v~~~d~~~~~~~ 651 (653)
...... +.+...-+|+|.|.+|+.|.
T Consensus 515 a~D~g~--------lss~~tv~V~V~d~ndn~~~ 540 (550)
T 3q2v_A 515 LADNQN--------KDQVTTLDVHVCDCEGTVNN 540 (550)
T ss_dssp CCSSSC--------CCCBCCCEEEEECCCC----
T ss_pred EEECCc--------ceeEEEEEEEEEEecCCCcc
Confidence 431111 45666689999999998874
No 4
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1
Probab=100.00 E-value=2.9e-64 Score=562.63 Aligned_cols=484 Identities=20% Similarity=0.232 Sum_probs=392.2
Q ss_pred CceEEecCCCC--CCcEEEEEEEecCCCCCCceEEEEEecCCCC--CcceEEEcCCCCCCC-------------------
Q psy1887 29 QPVIQLAPNLT--MNDVLTKITAIDGDKGHPRTIKYGLVSEGHP--MTVFFTINELTGPKM------------------- 85 (653)
Q Consensus 29 ~~~~~V~E~~~--~g~~i~~v~A~D~D~g~n~~i~ysl~~~~~~--~~~~F~Id~~tG~~~------------------- 85 (653)
.|.++|+||++ .+..|+++.+ |.| .|+.|+|+|.+++.. ..++|.|++.+|.|.
T Consensus 10 ~~~~~v~En~~g~~~~~v~~~~~-d~d--~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~l~~~~~LDrE~~~~y~l~v~A 86 (546)
T 1l3w_A 10 IPPIKVSENERGPFPKRLVQIKS-NKD--RFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHA 86 (546)
T ss_dssp CCCEEEESSCCSSSCEEEEECCC-SGG--GSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTTCCEEEEEEEE
T ss_pred cceeEecCCCCCCCCcEEEEEEc-CCC--CCceEEEEEECCCCCCCCCceEEEeCCccEEEECCcCCcccCceEEEEEEE
Confidence 46789999997 2445777764 555 599999999876431 235899999999841
Q ss_pred -------CccEEEEEEEEeeecCCCceeccccCeEEEEeecCCCCceEEEEEEEecCCCC-----cceEEEecCCCceEE
Q psy1887 86 -------SPQVFLLVLMCYSVVANYPVFDISTQMRSLLIPASVKLGTIIYRLRASDSDKD-----YPLTFDATDFGSYVV 153 (653)
Q Consensus 86 -------~~~~~~vvi~v~d~Nd~~P~f~~~~~~~~~~v~E~~~~gt~i~~v~a~D~D~~-----~~~~y~i~~~~~~~f 153 (653)
......+.|.|.|+|||+|.|....| .+.|+|++++|+.|+++.|+|+|.+ ..++|+|.....
T Consensus 87 ~D~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y--~~~V~En~~~gt~v~~v~A~D~D~g~~~~n~~v~Ysi~~~~~--- 161 (546)
T 1l3w_A 87 VSENGSPVEEPMEITINVIDQNDNRPKFTQDVF--RGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDP--- 161 (546)
T ss_dssp EESSSCBCSCCEEEEEEEECCSCCCCEESSSCE--EEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESS---
T ss_pred EeCCCCcccceEEEEEEEEecccCcCEecCcee--EEEEECCCCCCCEEEEEEEEcCCCCCCCCCCEEEEEEeCCCC---
Confidence 11234577889999999999999976 9999999999999999999999986 577777721000
Q ss_pred EEeeccCCCCCCeeEEEEEEccccCCCceEEEEEEEEECCCCCeeeeEEEEEEecCCCCCCCCCCCCeEEEEeCCCcEEE
Q psy1887 154 KIKSLPCSKNSSFCEANVYLDRVLVPGQVFQFRIIVKDTRGDTTTVPTSLTATDAALNINAQFPHIPGVIVVPEVLGTYL 233 (653)
Q Consensus 154 ~i~~~~~~~~~~~~~g~i~l~~~le~~~~~~~~v~v~d~~g~~~~~~~~i~v~~~~~~~~p~~~~~~~~~~i~e~~G~i~ 233 (653)
.......|.|++.+|.|+
T Consensus 162 --------------------------------------------------------------~~~~~~~F~Id~~tG~i~ 179 (546)
T 1l3w_A 162 --------------------------------------------------------------EEPIPNLFTINRETGVIS 179 (546)
T ss_dssp --------------------------------------------------------------CCSCSCSEEECTTTCEEE
T ss_pred --------------------------------------------------------------CcccCCcEEEeCCCceEE
Confidence 001223588999999999
Q ss_pred Ee-ecCC-CCcceEEEEEEEeeCCccccceecCCCcEEEEEEEEEecccCCCCCCCeEEEEEEEEEEccCCCCCeecCCc
Q psy1887 234 LW-RHLS-GPKNMYLMREIRLSKPYRELHTVASGQPVILMVLAEEERKDLNEPSPQSSTATIALVFDQAINTPPYFDTVQ 311 (653)
Q Consensus 234 ~~-~~lD-e~~~~y~l~~~~~~~~ld~~~~~~~~~~~~l~V~A~d~~~d~~~~~~~s~~~~v~i~V~dvNd~~P~f~~~~ 311 (653)
+. +.|| |....|.|.+ +|+|. | .|++++++.|+|.|.|+|||+|.|....
T Consensus 180 ~~~~~LD~E~~~~y~l~V-----------------------~A~D~----g-~~~~s~~~~v~I~V~DvNDn~P~F~~~~ 231 (546)
T 1l3w_A 180 LIGTGLDREKFPEYTLTV-----------------------QATDL----E-GAGLSVEGKAIIQITDANDNAPIFDPKT 231 (546)
T ss_dssp ECSCCCCTTTCCEEEEEE-----------------------EEEHH----H-HTSCEEECCEEEEEECCCCCCCCBSCSE
T ss_pred EeccCCCcccCceEEEEE-----------------------EEEEC----C-CCCcceEEEEEEEEeecCCCCCcccccc
Confidence 85 6899 8877776666 88762 2 3578999999999999999999999999
Q ss_pred eEEEEeCCCCCCcEEEeeeceeeEEeeCC--CCcceEEEEEEec-CCCcEEEcc----cceeeeeeEEEEEecCCCCCcc
Q psy1887 312 YITHLDENSPQGTALIFAESFHTQVTDDN--MGKNGIFSLTLEN-NNGTFEIWP----SVVERKAQFTIRVRNNKNLDYE 384 (653)
Q Consensus 312 ~~~~v~En~~~gt~v~~v~~~~~~a~D~D--~g~n~~~~~~~~~-~~~~F~I~~----~tg~~~~~~~i~l~~~~~LD~E 384 (653)
|.++|+|+ ++|+.|++ +.|+|+| .|.|+.++|++.. ..+.|.|+. .+|. |++.++||||
T Consensus 232 y~~~V~En-~~gt~v~~-----v~A~D~D~~~g~n~~v~y~i~~~~~~~F~I~~d~~~~~G~--------i~~~~~LD~E 297 (546)
T 1l3w_A 232 YTALVPEN-EIGFEVQR-----LSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGI--------LTTAKGLDFE 297 (546)
T ss_dssp EEEEEESS-SCCCEEEE-----ECBCCCSCTTSTTSCEECCBSCCTTSCEEEEECTTTCCEE--------EEESSCCCCS
T ss_pred ceEEEEeC-CCCCEEEE-----EEEEeCCCCCCCCcEEEEEEEeCCCceEEEEecCCCCeEE--------EEECccCCcc
Confidence 99999999 99999998 4999999 7889989998854 567999963 4675 7789999999
Q ss_pred CCCeEEEEEEEEECCCCCCCCCceEEEEEEEEEeecCCCCCeecccceEEEeeCCCCCCcEEEEEEEeeCCCCCCceEEE
Q psy1887 385 RTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILY 464 (653)
Q Consensus 385 ~~~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~gt~v~~v~a~D~D~g~n~~i~y 464 (653)
....|.|+|+|+|.+..+ .+.++++++|+|+|.|+|| +|.|....|.+.|+|+.++|+.|+++.|+|+|.|.|++++|
T Consensus 298 ~~~~y~l~V~a~D~~~~~-~~~~s~~~~v~I~V~DvND-~P~f~~~~y~~~V~En~~~g~~v~~v~A~D~D~g~n~~i~y 375 (546)
T 1l3w_A 298 LRKQYVLQITVENAEPFS-VPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSY 375 (546)
T ss_dssp SCCCEEEEECCEESSCCS-SCCCCCCEEEEEEEECCCC-CCEESSCEECCCBCTTCCSSEEEEECCEECCCTTCCCCEEE
T ss_pred cccEEEEEEEEEECCCCC-CCCcceeEEEEEEEEcCCC-CCcEecceEEEEEeCCCCCCCEEEEEEEECCCCCCCceEEE
Confidence 999999999999987321 2457899999999999999 99999999999999999999999999999999999999999
Q ss_pred EEEcCCCCcceEEeCCCCeEEEEcCccCCccCc----cEEEEEEEEEECCCCCceEEEEEEEEEEecCCCCCeEeecCcE
Q psy1887 465 TAILGYKNSSLELDAHTGDITIANGQQFDREEA----SEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFE 540 (653)
Q Consensus 465 ~i~~~~~~~~F~Id~~tG~i~~~~~~~lD~E~~----~~~~l~V~a~D~g~~~~~~~~~v~I~V~DvNDn~P~f~~~~y~ 540 (653)
+|..+ ..++|.|++.+|.|++. +.||||.. ..|.|+|.|+|.|.|+++++++|+|+|+|+|||+|+|.+. .
T Consensus 376 si~~~-~~~~F~Id~~tG~i~~~--~~lD~E~~~~~~~~y~l~V~a~D~g~p~~s~~~~v~I~V~DvNDn~P~f~~~--~ 450 (546)
T 1l3w_A 376 FIGND-PARWLTVNKDNGIVTGN--GNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPR--V 450 (546)
T ss_dssp EECCC-SSCCCEEETTTTEEEEC--SCCCTTSSSCCSSCCEEEEEEEECSSSCCCCCEEEECCBCCCCCSCCCBSCC--C
T ss_pred EECCC-CCCcEEEeCCcEEEEEC--CccCCccccCCCCEEEEEEEEEECCCCCcEeEEEEEEEEEECCCCcCCccCc--e
Confidence 98664 56799999999999998 89999997 8999999999999999999999999999999999999853 6
Q ss_pred EEEecCCCCCeEEEEEEEEeCCCCCCCCe-EEEEEEeCCCCCcEEEEcCCCccceeeEEEEEEeCCC-CCccceEEEecC
Q psy1887 541 FVLASDSRNFSERTFIKATDQDAEAPNNI-VRYEIISGNYDNKFSLHPETGVPHKWSTTQVRIYPPD-SAVRNIKFLVPH 618 (653)
Q Consensus 541 ~~v~e~~~~g~~v~~v~A~D~D~~~~n~~-i~Y~i~~~~~~~~F~Id~~tG~p~~~~~~~v~i~~~~-~~~~~~~~~v~~ 618 (653)
+.|+|+.++|+ + |.|+|+|.+ .|+. ++|+|.+++ .+.|+| ..+|.- ..+.....+ .....|.+.|..
T Consensus 451 ~~v~e~~~~g~-v--v~A~D~D~~-~n~~~~~y~l~~~~-~~~f~i-~~~g~~-----~~~~~~~~d~e~~~~y~l~V~a 519 (546)
T 1l3w_A 451 FTMCDQNPEPQ-V--LTISDADIP-PNTYPYKVSLSHGS-DLTWKA-ELDSKG-----TSMLLSPTQQLKKGDYSIYVLL 519 (546)
T ss_dssp EEECSSSCCCE-E--EEBCCSSCT-TTTCCCCCBCCSCS-SSSCBC-CBCTTS-----SEEEEBCSSCCCSSCBCCEEEC
T ss_pred EEEecCCCCCe-E--EEEEeCCCC-CCCccEEEEECCCC-CCCEEE-eccCCc-----eEEEecccccccCceEEEEEEE
Confidence 88999999997 3 999999987 6776 999997654 457988 555632 223333322 234555566544
Q ss_pred CccchhccchhheeeeecCcEEEEEecCCCCC
Q psy1887 619 SQAQLERKQLEDILSEMSGGRVSVVNTRPHYE 650 (653)
Q Consensus 619 ~~~~~~~~~~~~~l~~~~~~~v~~~d~~~~~~ 650 (653)
..... +.+....+|.|.|++|+.+
T Consensus 520 ~D~g~--------~s~~~~v~I~V~d~NDn~~ 543 (546)
T 1l3w_A 520 SDAQN--------NPQLTVVNATVCSCEGKAI 543 (546)
T ss_dssp CSSSC--------CCEEEECCEEECSCSSSCC
T ss_pred EECCc--------CceEEEEEEEEEeccCCCC
Confidence 42111 4555668999999999865
No 5
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=100.00 E-value=2.1e-64 Score=589.41 Aligned_cols=474 Identities=19% Similarity=0.228 Sum_probs=305.9
Q ss_pred EEEeeecCCCceeccccCeEEEEee-cCCCCceEEEEEEEecCCCCcceEEEecCCCceEEEEeeccCCCCCCeeEEEEE
Q psy1887 94 LMCYSVVANYPVFDISTQMRSLLIP-ASVKLGTIIYRLRASDSDKDYPLTFDATDFGSYVVKIKSLPCSKNSSFCEANVY 172 (653)
Q Consensus 94 i~v~d~Nd~~P~f~~~~~~~~~~v~-E~~~~gt~i~~v~a~D~D~~~~~~y~i~~~~~~~f~i~~~~~~~~~~~~~g~i~ 172 (653)
..+.|+|||+|.|....| .++|+ |+.++|++|++|.|+|+|.+..++|++.+ ..|+|+. +|.|+
T Consensus 25 ~~~~d~ndn~P~F~~~~y--~~~v~~e~~~~Gt~V~~v~a~D~D~n~~i~Y~~~~---~~F~Id~----------~G~i~ 89 (880)
T 1q55_A 25 SINADVSGCKPGFSSAEY--IFSVNRRELERGRKLGKVNFSDCTTRKHGLYDVGD---SRFRVLP----------DGTVL 89 (880)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eecccccCCCCccCCCeE--EEEechhhCCCCCEEEEEEEEeCCCCceEEEEeCC---CCEEECC----------CceEE
Confidence 346799999999999976 89999 99999999999999999987789999843 4788874 58999
Q ss_pred EccccCCCceEEEEEEEEECCCCCeeeeEEEE-EEecC---------CCCCCCCCCCCe------------EEEEeCCCc
Q psy1887 173 LDRVLVPGQVFQFRIIVKDTRGDTTTVPTSLT-ATDAA---------LNINAQFPHIPG------------VIVVPEVLG 230 (653)
Q Consensus 173 l~~~le~~~~~~~~v~v~d~~g~~~~~~~~i~-v~~~~---------~~~~p~~~~~~~------------~~~i~e~~G 230 (653)
+.++|+.+..|.|.|+|+|.++......+.|. +.+.+ .+..|.|+...+ .+.|+|++.
T Consensus 90 ~~~~Ld~e~~~~l~V~A~D~~~~~~~~~v~v~~v~~~~~~~~~~~~~~~~~p~f~~~~~~~~r~~r~~~~~~~~v~En~~ 169 (880)
T 1q55_A 90 VKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENER 169 (880)
T ss_dssp ------------------------------------------------------------------CCCCCCEEEESSCC
T ss_pred ECCccccccceEEEEEEEcCCCCeEEEEEEEEEecccccccccccccccCcccccccccccceeeccccccceEEeCCCC
Confidence 99999655559999999997665555555555 22211 234567766532 588999872
Q ss_pred ----E-EEEeec-CC-CCcceEEEEE-------------------EEeeCCccccceecCCCcEEEEEEEEEecccCCCC
Q psy1887 231 ----T-YLLWRH-LS-GPKNMYLMRE-------------------IRLSKPYRELHTVASGQPVILMVLAEEERKDLNEP 284 (653)
Q Consensus 231 ----~-i~~~~~-lD-e~~~~y~l~~-------------------~~~~~~ld~~~~~~~~~~~~l~V~A~d~~~d~~~~ 284 (653)
. +....+ .| ...-.|+|.. +.+.++||||. ...|.|+|+|+| .+ .
T Consensus 170 ~~~~~~v~~v~~d~d~~~~v~Ysi~~~~~~~~~~~~F~Id~~tG~l~~~~~LDrE~----~~~y~l~v~A~D----~g-~ 240 (880)
T 1q55_A 170 GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREE----YDKYVLSSHAVS----EN-G 240 (880)
T ss_dssp SSSCEEEEECCCSGGGSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSCCCTTT----CCEEEEEEEEEE----SS-S
T ss_pred CCCCeEEEEEeeCCCCCceEEEEEECCCCCCCcCCEEEEECCcCEEEECCccCccc----cCccEEEEEEEE----CC-C
Confidence 2 222221 12 2334566542 77788999985 568899999987 23 3
Q ss_pred CCCeEEEEEEEEEEccCCCCCeecCCceEEEEeCCCCCCcEEEeeeceeeEEeeCCCC---cceEEEEEEec------CC
Q psy1887 285 SPQSSTATIALVFDQAINTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMG---KNGIFSLTLEN------NN 355 (653)
Q Consensus 285 ~~~s~~~~v~i~V~dvNd~~P~f~~~~~~~~v~En~~~gt~v~~v~~~~~~a~D~D~g---~n~~~~~~~~~------~~ 355 (653)
+++++++.|+|.|.|+|||+|.|....|.++|+|++++|+.|+++ +|+|+|.| .|+.++|++.+ ..
T Consensus 241 ~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En~~~Gt~V~~v-----~AtD~D~g~~~~N~~v~Ysi~~~~~~~~~~ 315 (880)
T 1q55_A 241 SPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAV-----SATDEDDNIDSLNGVLSYSILKQDPEEPIP 315 (880)
T ss_dssp CBCSCCEEEEEEEECCSCCCCEESSSCEEEEEETTCCSSEEEEEC-----CEECCSCCSSSSTTCCEEEEEEESSCCSCS
T ss_pred CceeeeEEEEEEEEecCCCCCCccCCcEEEEEeCCCCCCceeEEE-----EEEcCCCCCCCcCcEEEEEEcCCCCCcccC
Confidence 567788999999999999999999999999999999999999985 99999998 68888887732 24
Q ss_pred CcEEEcccceeeeeeEEEEEec-CCCCCccCCCeEEEEEEEEECCCCCCCCCceEEEEEEEEEeecCCCCCeecccceEE
Q psy1887 356 GTFEIWPSVVERKAQFTIRVRN-NKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTA 434 (653)
Q Consensus 356 ~~F~I~~~tg~~~~~~~i~l~~-~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~ 434 (653)
+.|+|++.+|. |++ .++||||+.+.|.|+|+|+|.+ .++++++++|+|+|+|+|||+|+|....|.+
T Consensus 316 ~~F~Id~~tG~--------I~~~~~~LDrE~~~~y~l~V~A~D~g----~~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~ 383 (880)
T 1q55_A 316 NLFTINRETGV--------ISLIGTGLDREKFPEYTLTVQATDLE----GAGLSVEGKAIIQITDANDNAPIFDPKTYTA 383 (880)
T ss_dssp CSEEECTTTCE--------EEECSCCCCTTTCCEEEEEEEEEHHH----HTSCEEECCEEEEEECCCCCCCCBSCSEEEE
T ss_pred CeEEEccCCcc--------EEEecccCCHHHcceeEEEEEEEECC----CCCccceeEEEEEEEeccCCCCCccccceEE
Confidence 68999999997 555 4799999999999999999988 5679999999999999999999999999999
Q ss_pred EeeCCCCCCcEEEEEEEeeCC--CCCCceEEEEEEcCCCCcceEEe--C--CCCeEEEEcCccCCccCccEEEEEEEEEE
Q psy1887 435 KIPENATAGEKVVQVKATDVD--TNLGGEILYTAILGYKNSSLELD--A--HTGDITIANGQQFDREEASEYKFQVEARD 508 (653)
Q Consensus 435 ~V~E~~~~gt~v~~v~a~D~D--~g~n~~i~y~i~~~~~~~~F~Id--~--~tG~i~~~~~~~lD~E~~~~~~l~V~a~D 508 (653)
+|+|+ ++|+.|+++.|+|+| .|.|++++|+|.. +..+.|.|+ + .+|.|++. ++||||....|.|+|+|+|
T Consensus 384 ~V~En-~~gt~V~~v~A~D~D~~~g~n~~v~Ysi~~-~~~~~F~I~~d~~~~~G~i~~~--~~LD~E~~~~y~l~V~A~D 459 (880)
T 1q55_A 384 LVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRV-NEGGFFNITTDPESNQGILTTA--KGLDFELRKQYVLQITVEN 459 (880)
T ss_dssp EEESS-SCCCEEEEECBCCCSCTTSTTSCEECCBSC-CTTSCEEEEECTTTCCEEEEES--SCCCCSSCCCEEEEECCEE
T ss_pred EeecC-CCCcEEEEEEEECCCCCCCCCceEEEEEec-CCCceEEEEecCCCceEEEecc--cCCCcccCCcEEEEEEEEE
Confidence 99999 999999999999999 6889999999877 677899995 3 57999998 8999999999999999999
Q ss_pred CCC---CCceEEEEEEEEEEecCCCCCeEeecCcEEEEecCCCCCeEEEEEEEEeCCCCCCCCeEEEEEEeCCCCCcEEE
Q psy1887 509 MQG---LGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDAEAPNNIVRYEIISGNYDNKFSL 585 (653)
Q Consensus 509 ~g~---~~~~~~~~v~I~V~DvNDn~P~f~~~~y~~~v~e~~~~g~~v~~v~A~D~D~~~~n~~i~Y~i~~~~~~~~F~I 585 (653)
++. ++++++++|+|+|+|+|| +|+|.+..|.+.|.|++++|+.|++|.|+|+|.+ .|+.++|+|.. +..++|.|
T Consensus 460 ~~~~~~~~~sst~tV~I~V~DvND-~P~f~~~~y~~~V~En~~~Gt~V~~v~A~D~D~g-~n~~v~Ysi~~-~~~~~F~I 536 (880)
T 1q55_A 460 AEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQ-QIQKLSYFIGN-DPARWLTV 536 (880)
T ss_dssp SSCCSSCCCCCCEEEEEEEECCCC-CCEESSCEECCCBCTTCCSSEEEEECCEECCCTT-CCCCEEEEECC-CSSCCCEE
T ss_pred CCCCCCCCcceeEEEEEEEEeCCC-CCEEecCceEEEEeCCCCCCCEEEEEEEEeCCCC-CCCcEEEEECC-CCCCCEEE
Confidence 873 457899999999999999 9999999999999999999999999999999986 68999999965 45789999
Q ss_pred EcCCC------------------------------ccceeeEEEEEEeCCCCCccceEEE
Q psy1887 586 HPETG------------------------------VPHKWSTTQVRIYPPDSAVRNIKFL 615 (653)
Q Consensus 586 d~~tG------------------------------~p~~~~~~~v~i~~~~~~~~~~~~~ 615 (653)
++.+| .|+++++++|.|.+.+.|++.+.|.
T Consensus 537 d~~tG~I~~~~~LDrE~~~~~~~~y~l~V~A~D~g~p~~sst~tv~I~V~DvNDn~P~f~ 596 (880)
T 1q55_A 537 NKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPS 596 (880)
T ss_dssp ETTTTEEEECSCCCTTSSSCCSSCCEEEEEEEECSSSCCCCCEEEECCBCCCCCSCCCBS
T ss_pred eCCccEEEECCccCcccccCCCCEEEEEEEEEECCCCCcEeEEEEEEEEEeCCCCCCCcc
Confidence 98874 4555666666666666666655553
No 6
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}
Probab=100.00 E-value=4.6e-59 Score=522.41 Aligned_cols=413 Identities=18% Similarity=0.204 Sum_probs=337.3
Q ss_pred ceeeEEEEEEEEeccCCCCcCCCCCceEEecCCCCCCcEEEEEEEecCCCC--CCceEEEEEecCCCC--CcceEEEcCC
Q psy1887 5 NIAGFEVVVVVDDVQDTPPIFINIQPVIQLAPNLTMNDVLTKITAIDGDKG--HPRTIKYGLVSEGHP--MTVFFTINEL 80 (653)
Q Consensus 5 ~~~~~~v~I~V~DvNDn~P~F~~~~~~~~V~E~~~~g~~i~~v~A~D~D~g--~n~~i~ysl~~~~~~--~~~~F~Id~~ 80 (653)
.++++.|.|+|+|+|||+|+|.+..|.++|+|++++|+.|+++.|+|+|.| .|+.++|+|.++... ..++|.|++.
T Consensus 88 ~~~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En~~~Gt~v~~v~A~D~D~g~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~ 167 (559)
T 3q2w_A 88 VENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNE 167 (559)
T ss_dssp EEEEEEEEEEEECCCCCCCEESCSEEEEEEETTCCTTCEEEECCEECSSCTTSGGGCCEEEEEEEESCCSCTTCEEECTT
T ss_pred cceeEEEEEEEEeCCCCCCccCCCeeEEEEeCCCCCCcEEEEEEEEcCCCCCCCceEEEEEEecCCCCCCCcceEEEeCC
Confidence 356788999999999999999999999999999999999999999999997 699999999764321 1247999999
Q ss_pred CCCCC------------------------------CccEEEEEEEEeeecCCCceeccccCeEEEEeecCCCCceEEEEE
Q psy1887 81 TGPKM------------------------------SPQVFLLVLMCYSVVANYPVFDISTQMRSLLIPASVKLGTIIYRL 130 (653)
Q Consensus 81 tG~~~------------------------------~~~~~~vvi~v~d~Nd~~P~f~~~~~~~~~~v~E~~~~gt~i~~v 130 (653)
+|++. ......+.|.|.|+|||+|.|....| .+.|+|+. +|+.|+++
T Consensus 168 tG~i~~~~~~LD~E~~~~y~l~V~A~D~~g~p~~~~s~t~~v~I~V~DvNDn~P~f~~~~y--~~~V~En~-~g~~v~~v 244 (559)
T 3q2w_A 168 TGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTF--YGEVPENR-VDVIVANL 244 (559)
T ss_dssp TCEEEECCSCCCTTTCCEEEEEEEEEHHHHCTTTCCEEEEEEEEEEECCSCSCCEESSSEE--EEEEESSC-SSEEEEEE
T ss_pred ceEEEEEeccCCcccCCEEEEEEEEEECCCCCCCCccceEEEEEEEEeCCCCCCccccccc--eeEecCCC-CCcEEEEE
Confidence 99731 12244577889999999999999976 89999997 89999999
Q ss_pred EEecCCCCc----ceEEEe-cCCCceEEEEeeccCCCCCCeeEEEEEEccccCCCceEEEEEEEEECCCCCeeeeEEEEE
Q psy1887 131 RASDSDKDY----PLTFDA-TDFGSYVVKIKSLPCSKNSSFCEANVYLDRVLVPGQVFQFRIIVKDTRGDTTTVPTSLTA 205 (653)
Q Consensus 131 ~a~D~D~~~----~~~y~i-~~~~~~~f~i~~~~~~~~~~~~~g~i~l~~~le~~~~~~~~v~v~d~~g~~~~~~~~i~v 205 (653)
.|+|+|.+. .++|+| .+.....
T Consensus 245 ~a~D~D~~~~~n~~~~y~i~~g~~~~~----------------------------------------------------- 271 (559)
T 3q2w_A 245 TVTDKDQPHTPAWNAAYRISGGDPTGR----------------------------------------------------- 271 (559)
T ss_dssp EEECCSCTTSTTTSBCCEEEESCTTCC-----------------------------------------------------
T ss_pred EEEcCCCCCCCceeEEEEEecCCCCCc-----------------------------------------------------
Confidence 999999863 466666 1111222
Q ss_pred EecCCCCCCCCCCCCeEEEE----eCCCcEEEEeecCC-CCcceEEEEEEEeeCCccccceecCCCcEEEEEEEEEecc-
Q psy1887 206 TDAALNINAQFPHIPGVIVV----PEVLGTYLLWRHLS-GPKNMYLMREIRLSKPYRELHTVASGQPVILMVLAEEERK- 279 (653)
Q Consensus 206 ~~~~~~~~p~~~~~~~~~~i----~e~~G~i~~~~~lD-e~~~~y~l~~~~~~~~ld~~~~~~~~~~~~l~V~A~d~~~- 279 (653)
|.| ...+|.|.+.++|| |....|.|.+ +|+|...
T Consensus 272 -----------------F~I~~~~~~~~G~i~~~~~LD~E~~~~y~l~V-----------------------~A~D~~~~ 311 (559)
T 3q2w_A 272 -----------------FAILTDPNSNDGLVTVVKPIDFETNRMFVLTV-----------------------AAENQVPL 311 (559)
T ss_dssp -----------------EEEEECTTTCEEEEEECSCCCTTTCSEEEEEE-----------------------ECCBSSCC
T ss_pred -----------------eEEEecCCCCcEEEEeCCCCCCccCceEEEEE-----------------------EEEcCCcc
Confidence 334 34578899999999 8877777766 6765211
Q ss_pred cCCCCCCCeEEEEEEEEEEccCCCCCeecCCceEEEEeCCCCCCcEEEeeeceeeEEeeCCCCcceEEEEEEe-cCCCcE
Q psy1887 280 DLNEPSPQSSTATIALVFDQAINTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLE-NNNGTF 358 (653)
Q Consensus 280 d~~~~~~~s~~~~v~i~V~dvNd~~P~f~~~~~~~~v~En~~~gt~v~~v~~~~~~a~D~D~g~n~~~~~~~~-~~~~~F 358 (653)
..|..+++++++.|+|.|.|+|| +|.|....|.+.|.|+.++|+.|+++ .|+|+|.|.|+.++|++. +..++|
T Consensus 312 ~~g~~~~~~s~~~v~I~V~DvND-~P~f~~~~~~~~v~En~~~g~~v~~v-----~A~D~D~g~n~~i~Ysi~~~~~~~f 385 (559)
T 3q2w_A 312 AKGIQHPPQSTATVSVTVIDVNE-NPYFAPNPKIIRQEEGLHAGTMLTTL-----TAQDPDRYMQQNIRYTKLSDPANWL 385 (559)
T ss_dssp CTTCCCCGGGEEEEEEEEECCCC-CCEESSSEEEEEEESCCCTTCEEEEC-----CEECSCSSSCCCEEEEEEECTTCCE
T ss_pred ccCCCCCCceEEEEEEEEEeCCC-CCcccccceEEEEeCCCCCCCEEEEE-----EEECCCCCCCCceEEEEccCCccce
Confidence 11334678999999999999999 69999999999999999999999985 999999999999999874 456799
Q ss_pred EEcccceeeeeeEEEEEecCCCCCccCC----CeEEEEEEEEECCCCCCCCCceEEEEEEEEEeecCCCCCeecccceEE
Q psy1887 359 EIWPSVVERKAQFTIRVRNNKNLDYERT----RTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTA 434 (653)
Q Consensus 359 ~I~~~tg~~~~~~~i~l~~~~~LD~E~~----~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~ 434 (653)
.|++.+|. |++.++||||.. ..|.|+|+|+|.| .|+++++++|+|.|.|+|||+|.|....|
T Consensus 386 ~Id~~tG~--------i~~~~~lDrE~~~~~~~~y~l~V~A~D~g----~p~~ss~~~v~I~V~DvNDn~P~f~~~~~-- 451 (559)
T 3q2w_A 386 KIDPVNGQ--------ITTIAVLDRESPNVKNNIYNATFLASDNG----IPPMSGTGTLQIYLLDINDNAPQVLPQEA-- 451 (559)
T ss_dssp EECTTTCE--------EEESSCCCSSSTTSCSSEEEEEEEEEECS----SSCCEEEEEEEEEEECCSCCCCEESCTTC--
T ss_pred EecCCceE--------EEEccccCcccccccCCEEEEEEEEEcCC----CCcceEEEEEEEEEEEccCCCCcccCCce--
Confidence 99999997 888999999986 8999999999998 67899999999999999999999987655
Q ss_pred EeeCCCCCCcEEEEEEEeeCCCCCCc-eEEEEEEcCC--CCcceEEeCCCCeEEEEcCccCCccCccEEEEEEEEEECCC
Q psy1887 435 KIPENATAGEKVVQVKATDVDTNLGG-EILYTAILGY--KNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQG 511 (653)
Q Consensus 435 ~V~E~~~~gt~v~~v~a~D~D~g~n~-~i~y~i~~~~--~~~~F~Id~~tG~i~~~~~~~lD~E~~~~~~l~V~a~D~g~ 511 (653)
.+.|+ .|..+++|+|+|+|.|.|+ .++|+|.... ..+.|+|++.+|.+.+.. ..++++....|.|.|.|+|+|.
T Consensus 452 ~v~e~--~~~~v~~v~A~D~D~~~n~~~~~ysl~~~~~~~~~~f~i~~~~G~~~~~~-~~~~~~~~~~~~l~V~~~D~g~ 528 (559)
T 3q2w_A 452 ETCET--PEPNSINITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLN-LKIKFLEAGIYEVPIIITDSGN 528 (559)
T ss_dssp CCCSC--CCTTCEEECEECSCCTTSSSSCEEECCSSSHHHHHHEEEEECSSSCEEEE-ECSCC-CCEEEEEEEEEECSSS
T ss_pred EEeec--CCCcEEEEEEEcCCCCCCCCCEEEEEcCCCCccCCCeEEEecCCCEEEEE-eccCcccCcEEEEEEEEEECCC
Confidence 47888 4556789999999998887 8999987532 356899999999876542 3679999999999999999999
Q ss_pred CCceEEEEEEEEEEecCCCCCeEee
Q psy1887 512 LGLRTVVPLQLTILDVNDNAPIFVQ 536 (653)
Q Consensus 512 ~~~~~~~~v~I~V~DvNDn~P~f~~ 536 (653)
|+++++++|+|.|.|+||.+.....
T Consensus 529 P~lsst~tv~V~V~d~n~~~~~~~~ 553 (559)
T 3q2w_A 529 PPKSNISILRVKVCQCDSNGDCTDV 553 (559)
T ss_dssp SCCEEEEEEEEEEC-----------
T ss_pred CccceeEEEEEEEEeCCCCCccccc
Confidence 9999999999999999997766543
No 7
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}
Probab=100.00 E-value=7.4e-59 Score=519.75 Aligned_cols=407 Identities=20% Similarity=0.227 Sum_probs=332.9
Q ss_pred eeeEEEEEEEEeccCCCCcCCCCCceEEecCCCCCCcEEEEEEEecCCCC---CCceEEEEEecCCC--CCcceEEEcCC
Q psy1887 6 IAGFEVVVVVDDVQDTPPIFINIQPVIQLAPNLTMNDVLTKITAIDGDKG---HPRTIKYGLVSEGH--PMTVFFTINEL 80 (653)
Q Consensus 6 ~~~~~v~I~V~DvNDn~P~F~~~~~~~~V~E~~~~g~~i~~v~A~D~D~g---~n~~i~ysl~~~~~--~~~~~F~Id~~ 80 (653)
+.++.|.|+|+|+|||+|.|.+..|.++|+|++++|+.|+++.|+|+|.| .|+.++|+|.++.. +..++|.|++.
T Consensus 89 ~~~~~v~I~V~DvNDn~P~F~~~~y~~~V~E~~~~Gt~v~~v~A~D~D~g~~~~N~~i~Ysi~~~~~~~~~~~~F~id~~ 168 (550)
T 3q2v_A 89 EDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRD 168 (550)
T ss_dssp SCCEEEEEEEECCSCCCCCBSCSEEEEEEETTCCTTCEEEECCBCCCSCTTTCGGGCCEEEEEEEESCCSSSCSEEECTT
T ss_pred cceEEEEEEEEecCCCCCccCCCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCcceEEEEEEecCCCCCCcCCceEEcCC
Confidence 46788999999999999999999999999999999999999999999998 79999999986432 12348999999
Q ss_pred CCCCC---------------------------CccEEEEEEEEeeecCCCceeccccCeEEEEeecCCCCceEEEEEEEe
Q psy1887 81 TGPKM---------------------------SPQVFLLVLMCYSVVANYPVFDISTQMRSLLIPASVKLGTIIYRLRAS 133 (653)
Q Consensus 81 tG~~~---------------------------~~~~~~vvi~v~d~Nd~~P~f~~~~~~~~~~v~E~~~~gt~i~~v~a~ 133 (653)
+|.+. ......+.|.|.|+|||+|.|....| .+.|+|+ ++|+.|+++.|+
T Consensus 169 tG~i~~~~~~LDrE~~~~y~l~V~A~D~g~~~~s~t~~v~I~V~DvNDn~P~F~~~~y--~~~V~En-~~g~~v~~v~a~ 245 (550)
T 3q2v_A 169 TGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTY--QGQVPEN-EVNARIATLKVT 245 (550)
T ss_dssp TCEEEECSSCCCTTTCSEEEEEEEEESGGGTSCCCEEEEEEEEECCSCSCCEESSSEE--EEEEESS-CSSCCCEEECEE
T ss_pred CeEEEEccCCCCcccCcEEEEEEEEEcCCCCCeeEEEEEEEEecccCCCCCEEeccee--EEEEecC-CCCCEEEEEEEE
Confidence 99851 11234466889999999999999876 8999999 999999999999
Q ss_pred cCCCCc----ceEEEecCCCceEEEEeeccCCCCCCeeEEEEEEccccCCCceEEEEEEEEECCCCCeeeeEEEEEEecC
Q psy1887 134 DSDKDY----PLTFDATDFGSYVVKIKSLPCSKNSSFCEANVYLDRVLVPGQVFQFRIIVKDTRGDTTTVPTSLTATDAA 209 (653)
Q Consensus 134 D~D~~~----~~~y~i~~~~~~~f~i~~~~~~~~~~~~~g~i~l~~~le~~~~~~~~v~v~d~~g~~~~~~~~i~v~~~~ 209 (653)
|+|.+. .++|+|.......
T Consensus 246 D~D~~~n~~~~~~ysi~~~~~~~--------------------------------------------------------- 268 (550)
T 3q2v_A 246 DDDAPNTPAWKAVYTVVNDPDQQ--------------------------------------------------------- 268 (550)
T ss_dssp CCSCTTSTTTCEEEEESSCSSCC---------------------------------------------------------
T ss_pred ECCCCCCCcEEEEEEEEeCCCCc---------------------------------------------------------
Confidence 999863 3557773222222
Q ss_pred CCCCCCCCCCCeEEEEe----CCCcEEEEeecCC-CCcceEEEEEEEeeCCccccceecCCCcEEEEEEEEEecccCCCC
Q psy1887 210 LNINAQFPHIPGVIVVP----EVLGTYLLWRHLS-GPKNMYLMREIRLSKPYRELHTVASGQPVILMVLAEEERKDLNEP 284 (653)
Q Consensus 210 ~~~~p~~~~~~~~~~i~----e~~G~i~~~~~lD-e~~~~y~l~~~~~~~~ld~~~~~~~~~~~~l~V~A~d~~~d~~~~ 284 (653)
|.|. ..+|.|.+.+.|| |....|.|.+ +|+|.. ..+.
T Consensus 269 -------------F~i~~d~~~~tG~i~~~~~LD~E~~~~y~l~V-----------------------~a~D~~--~~~~ 310 (550)
T 3q2v_A 269 -------------FVVVTDPTTNDGILKTAKGLDFEAKQQYILHV-----------------------RVENEE--PFEG 310 (550)
T ss_dssp -------------EEEEECTTTCCEEEEESSCCCTTTCSEEEEEE-----------------------EEEESS--CCCS
T ss_pred -------------EEEEecCCCccEEEEecccCCccccceEEEEE-----------------------EEEeCC--CCCC
Confidence 3443 4578999999999 8877777666 887721 1123
Q ss_pred CCCeEEEEEEEEEEccCCCCCeecCCceEEEEeCCCCCCcEEEeeeceeeEEeeCCCCcceEEEEEEe-cCCCcEEEccc
Q psy1887 285 SPQSSTATIALVFDQAINTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLE-NNNGTFEIWPS 363 (653)
Q Consensus 285 ~~~s~~~~v~i~V~dvNd~~P~f~~~~~~~~v~En~~~gt~v~~v~~~~~~a~D~D~g~n~~~~~~~~-~~~~~F~I~~~ 363 (653)
+.+++++.|+|.|.|+|| +|.|....|.+.|+|++++|+.|+++ .|+|+|.|.|+.++|++. +..++|.|++.
T Consensus 311 ~~~~~~~~v~I~V~DvND-~P~f~~~~~~~~v~E~~~~gt~v~~v-----~A~D~D~g~n~~i~y~i~~~~~~~f~id~~ 384 (550)
T 3q2v_A 311 SLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQEITSY-----TAREPDTFMDQKITYRIWRDTANWLEINPE 384 (550)
T ss_dssp SCCCEEEEEEEEEECCCC-CCEESSSSCEEEEETTCCSSCEEEEC-----CEECCCCSTTCCCEEEEEECTTCCEEECTT
T ss_pred CccceEEEEEEEEEecCC-CCeEcCcceEEEEecCCCCCCEEEEE-----eCCCCCCCCCCCEEEEEecCCCCcEEEeCC
Confidence 558899999999999999 99999999999999999999999985 999999999999888884 45679999999
Q ss_pred ceeeeeeEEEEEecCCCCCccCC-----CeEEEEEEEEECCCCCCCCCceEEEEEEEEEeecCCCCCeecccceEEEeeC
Q psy1887 364 VVERKAQFTIRVRNNKNLDYERT-----RTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPE 438 (653)
Q Consensus 364 tg~~~~~~~i~l~~~~~LD~E~~-----~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E 438 (653)
+|. |++.++||||.. ..|.|+|.|+|.| .|+++++++|+|.|.|+|||+|.|.. |...|.|
T Consensus 385 tG~--------i~~~~~lDrE~~~~~~~~~y~l~V~A~D~g----~p~~s~~~~v~I~V~DvNDn~P~~~~--~~~~v~e 450 (550)
T 3q2v_A 385 TGA--------IFTRAEMDREDAEHVKNSTYVALIIATDDG----SPIATGTGTLLLVLLDVNDNAPIPEP--RNMQFCQ 450 (550)
T ss_dssp TCE--------EEECSCCCTTCTTTCCSSEEEEEEEEECCS----SSCCCEEEEEEEEEECCCCCCCEESC--SSCEEES
T ss_pred CcE--------EEECCccCcccccccCCCEEEEEEEEEeCC----CCcceeEEEEEEEEEeCCCCCCcCcC--cccceee
Confidence 997 888999999998 9999999999998 67899999999999999999999974 5677999
Q ss_pred CCCCCcEEEEEEEeeCCCCCCc-eEEEEEEcCCCCc-ceEEeCCCCeEEEEcCccCCccCccEEEEEEEEEECCCCCceE
Q psy1887 439 NATAGEKVVQVKATDVDTNLGG-EILYTAILGYKNS-SLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRT 516 (653)
Q Consensus 439 ~~~~gt~v~~v~a~D~D~g~n~-~i~y~i~~~~~~~-~F~Id~~tG~i~~~~~~~lD~E~~~~~~l~V~a~D~g~~~~~~ 516 (653)
+.+.|.. ++|+|+|.+.|+ .++|+|..++... .|.++..+|.+... ..+++|....|.|.|+|+|.|. +++
T Consensus 451 ~~~~~~~---v~A~D~D~~~n~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~y~l~V~a~D~g~--lss 523 (550)
T 3q2v_A 451 RNPQPHI---ITILDPDLPPNTSPFTAELTHGASVNWTIEYNDAAQESLIL--QPRKDLEIGEYKIHLKLADNQN--KDQ 523 (550)
T ss_dssp SSCCCEE---EEEECCSCTTSSSSCCCEEEECCSSSCEEECCSTTSSEEEE--ECSCC----CEECEEECCSSSC--CCC
T ss_pred cCCCcEE---EEEECCCCCCCCCCEEEEECCCCCCCeEEEEecCCCcEEEE--EecccCCCceEEEEEEEEECCc--cee
Confidence 9988765 999999999888 5899988775432 24444445887776 6789999999999999999887 888
Q ss_pred EEEEEEEEEecCCCCCeEeec
Q psy1887 517 VVPLQLTILDVNDNAPIFVQT 537 (653)
Q Consensus 517 ~~~v~I~V~DvNDn~P~f~~~ 537 (653)
+++|+|.|.|+|||+|.+..+
T Consensus 524 ~~tv~V~V~d~ndn~~~~~~~ 544 (550)
T 3q2v_A 524 VTTLDVHVCDCEGTVNNCMKA 544 (550)
T ss_dssp BCCCEEEEECCCC--------
T ss_pred EEEEEEEEEEecCCCcchhhh
Confidence 999999999999999987654
No 8
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1
Probab=100.00 E-value=2.5e-59 Score=522.67 Aligned_cols=405 Identities=17% Similarity=0.201 Sum_probs=337.3
Q ss_pred eeeEEEEEEEEeccCCCCcCCCCCceEEecCCCCCCcEEEEEEEecCCCC---CCceEEEEEecCCCC--CcceEEEcCC
Q psy1887 6 IAGFEVVVVVDDVQDTPPIFINIQPVIQLAPNLTMNDVLTKITAIDGDKG---HPRTIKYGLVSEGHP--MTVFFTINEL 80 (653)
Q Consensus 6 ~~~~~v~I~V~DvNDn~P~F~~~~~~~~V~E~~~~g~~i~~v~A~D~D~g---~n~~i~ysl~~~~~~--~~~~F~Id~~ 80 (653)
++++.|.|+|+|+|||+|+|.+..|.++|+|++++|+.|+++.|+|+|.| .|+.++|+|.+.... ..++|.|++.
T Consensus 95 ~~~~~v~I~V~DvNDn~P~F~~~~y~~~V~En~~~gt~v~~v~A~D~D~g~~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~ 174 (546)
T 1l3w_A 95 EEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRE 174 (546)
T ss_dssp SCCEEEEEEEECCSCCCCEESSSCEEEEEETTCCSSEEEEECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTT
T ss_pred cceEEEEEEEEecccCcCEecCceeEEEEECCCCCCCEEEEEEEEcCCCCCCCCCCEEEEEEeCCCCCcccCCcEEEeCC
Confidence 56689999999999999999999999999999999999999999999998 689999999875421 2348999999
Q ss_pred CCCCCC-----------cc----------------EEEEEEEEeeecCCCceeccccCeEEEEeecCCCCceEEEEEEEe
Q psy1887 81 TGPKMS-----------PQ----------------VFLLVLMCYSVVANYPVFDISTQMRSLLIPASVKLGTIIYRLRAS 133 (653)
Q Consensus 81 tG~~~~-----------~~----------------~~~vvi~v~d~Nd~~P~f~~~~~~~~~~v~E~~~~gt~i~~v~a~ 133 (653)
||.+.. .+ ...+.|.|.|+|||+|.|....| .+.|+|+ ++|+.|+++.|+
T Consensus 175 tG~i~~~~~~LD~E~~~~y~l~V~A~D~g~~~~s~~~~v~I~V~DvNDn~P~F~~~~y--~~~V~En-~~gt~v~~v~A~ 251 (546)
T 1l3w_A 175 TGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTY--TALVPEN-EIGFEVQRLSVT 251 (546)
T ss_dssp TCEEEECSCCCCTTTCCEEEEEEEEEHHHHTSCEEECCEEEEEECCCCCCCCBSCSEE--EEEEESS-SCCCEEEEECBC
T ss_pred CceEEEeccCCCcccCceEEEEEEEEECCCCCcceEEEEEEEEeecCCCCCccccccc--eEEEEeC-CCCCEEEEEEEE
Confidence 998521 11 12255778999999999999876 9999999 999999999999
Q ss_pred cCC--CC--cceEEEecCCCceEEEEeeccCCCCCCeeEEEEEEccccCCCceEEEEEEEEECCCCCeeeeEEEEEEecC
Q psy1887 134 DSD--KD--YPLTFDATDFGSYVVKIKSLPCSKNSSFCEANVYLDRVLVPGQVFQFRIIVKDTRGDTTTVPTSLTATDAA 209 (653)
Q Consensus 134 D~D--~~--~~~~y~i~~~~~~~f~i~~~~~~~~~~~~~g~i~l~~~le~~~~~~~~v~v~d~~g~~~~~~~~i~v~~~~ 209 (653)
|+| .+ ..++|+|.......|.|+.. .
T Consensus 252 D~D~~~g~n~~v~y~i~~~~~~~F~I~~d---------------------------------~----------------- 281 (546)
T 1l3w_A 252 DLDMPGTPAWQAVYKIRVNEGGFFNITTD---------------------------------P----------------- 281 (546)
T ss_dssp CCSCTTSTTSCEECCBSCCTTSCEEEEEC---------------------------------T-----------------
T ss_pred eCCCCCCCCcEEEEEEEeCCCceEEEEec---------------------------------C-----------------
Confidence 999 33 46788773222223333210 0
Q ss_pred CCCCCCCCCCCeEEEEeCCCcEEEEeecCC-CCcceEEEEEEEeeCCccccceecCCCcEEEEEEEEEecccCCCCCCCe
Q psy1887 210 LNINAQFPHIPGVIVVPEVLGTYLLWRHLS-GPKNMYLMREIRLSKPYRELHTVASGQPVILMVLAEEERKDLNEPSPQS 288 (653)
Q Consensus 210 ~~~~p~~~~~~~~~~i~e~~G~i~~~~~lD-e~~~~y~l~~~~~~~~ld~~~~~~~~~~~~l~V~A~d~~~d~~~~~~~s 288 (653)
...+|.|++.+.|| |....|.|.+ +|+|.. ..+.|.++
T Consensus 282 ----------------~~~~G~i~~~~~LD~E~~~~y~l~V-----------------------~a~D~~--~~~~~~~s 320 (546)
T 1l3w_A 282 ----------------ESNQGILTTAKGLDFELRKQYVLQI-----------------------TVENAE--PFSVPLPT 320 (546)
T ss_dssp ----------------TTCCEEEEESSCCCCSSCCCEEEEE-----------------------CCEESS--CCSSCCCC
T ss_pred ----------------CCCeEEEEECccCCcccccEEEEEE-----------------------EEEECC--CCCCCCcc
Confidence 02468888888999 8877776666 777621 11235688
Q ss_pred EEEEEEEEEEccCCCCCeecCCceEEEEeCCCCCCcEEEeeeceeeEEeeCCCCcceEEEEEEec-CCCcEEEcccceee
Q psy1887 289 STATIALVFDQAINTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLEN-NNGTFEIWPSVVER 367 (653)
Q Consensus 289 ~~~~v~i~V~dvNd~~P~f~~~~~~~~v~En~~~gt~v~~v~~~~~~a~D~D~g~n~~~~~~~~~-~~~~F~I~~~tg~~ 367 (653)
+++.|+|.|.|+|| +|.|....|.+.|+|+.++|+.|+++ .|+|+|.|.|+.++|++.+ ..++|.|++.+|.
T Consensus 321 ~~~~v~I~V~DvND-~P~f~~~~y~~~V~En~~~g~~v~~v-----~A~D~D~g~n~~i~ysi~~~~~~~F~Id~~tG~- 393 (546)
T 1l3w_A 321 STATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISL-----VAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGI- 393 (546)
T ss_dssp CCEEEEEEEECCCC-CCEESSCEECCCBCTTCCSSEEEEEC-----CEECCCTTCCCCEEEEECCCSSCCCEEETTTTE-
T ss_pred eeEEEEEEEEcCCC-CCcEecceEEEEEeCCCCCCCEEEEE-----EEECCCCCCCceEEEEECCCCCCcEEEeCCcEE-
Confidence 99999999999999 99999999999999999999999984 9999999999999999854 4579999999997
Q ss_pred eeeEEEEEecCCCCCccCC----CeEEEEEEEEECCCCCCCCCceEEEEEEEEEeecCCCCCeecccceEEEeeCCCCCC
Q psy1887 368 KAQFTIRVRNNKNLDYERT----RTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAG 443 (653)
Q Consensus 368 ~~~~~i~l~~~~~LD~E~~----~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~g 443 (653)
|++.++||||.. ..|.|+|+|+|.| .|+++++++|+|+|.|+|||+|.|... ...|.|+.++|
T Consensus 394 -------i~~~~~lD~E~~~~~~~~y~l~V~a~D~g----~p~~s~~~~v~I~V~DvNDn~P~f~~~--~~~v~e~~~~g 460 (546)
T 1l3w_A 394 -------VTGNGNLDRESEYVKNNTYTVIMLVTDDG----VSVGTGTGTLILHVLDVNDNGPVPSPR--VFTMCDQNPEP 460 (546)
T ss_dssp -------EEECSCCCTTSSSCCSSCCEEEEEEEECS----SSCCCCCEEEECCBCCCCCSCCCBSCC--CEEECSSSCCC
T ss_pred -------EEECCccCCccccCCCCEEEEEEEEEECC----CCCcEeEEEEEEEEEECCCCcCCccCc--eEEEecCCCCC
Confidence 788999999998 8999999999998 678999999999999999999999853 67899999999
Q ss_pred cEEEEEEEeeCCCCCCce-EEEEEEcCCCCcceEEeCCCC---eEEEEcCccCCccCccEEEEEEEEEECCCCCceEEEE
Q psy1887 444 EKVVQVKATDVDTNLGGE-ILYTAILGYKNSSLELDAHTG---DITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVP 519 (653)
Q Consensus 444 t~v~~v~a~D~D~g~n~~-i~y~i~~~~~~~~F~Id~~tG---~i~~~~~~~lD~E~~~~~~l~V~a~D~g~~~~~~~~~ 519 (653)
+ + +.|+|+|.|.|+. ++|+|..++ ...|.| ..+| .+.+ +.+|||....|.|.|.|+|.|. ++++++
T Consensus 461 ~-v--v~A~D~D~~~n~~~~~y~l~~~~-~~~f~i-~~~g~~~~~~~---~~~d~e~~~~y~l~V~a~D~g~--~s~~~~ 530 (546)
T 1l3w_A 461 Q-V--LTISDADIPPNTYPYKVSLSHGS-DLTWKA-ELDSKGTSMLL---SPTQQLKKGDYSIYVLLSDAQN--NPQLTV 530 (546)
T ss_dssp E-E--EEBCCSSCTTTTCCCCCBCCSCS-SSSCBC-CBCTTSSEEEE---BCSSCCCSSCBCCEEECCSSSC--CCEEEE
T ss_pred e-E--EEEEeCCCCCCCccEEEEECCCC-CCCEEE-eccCCceEEEe---cccccccCceEEEEEEEEECCc--CceEEE
Confidence 8 3 9999999999987 899987654 347888 4444 4443 4568999999999999999877 889999
Q ss_pred EEEEEEecCCCCCeE
Q psy1887 520 LQLTILDVNDNAPIF 534 (653)
Q Consensus 520 v~I~V~DvNDn~P~f 534 (653)
|+|.|.|+|||++.|
T Consensus 531 v~I~V~d~NDn~~~C 545 (546)
T 1l3w_A 531 VNATVCSCEGKAIKC 545 (546)
T ss_dssp CCEEECSCSSSCCCC
T ss_pred EEEEEEeccCCCCCc
Confidence 999999999998764
No 9
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=3.8e-55 Score=473.96 Aligned_cols=331 Identities=20% Similarity=0.286 Sum_probs=279.1
Q ss_pred CcEEEEeecCC-CCc---ceEEEEEEEeeCCccccceecCCCcEEEEEEEEEecccCCCC--CCCeEEEEEEEEEEccCC
Q psy1887 229 LGTYLLWRHLS-GPK---NMYLMREIRLSKPYRELHTVASGQPVILMVLAEEERKDLNEP--SPQSSTATIALVFDQAIN 302 (653)
Q Consensus 229 ~G~i~~~~~lD-e~~---~~y~l~~~~~~~~ld~~~~~~~~~~~~l~V~A~d~~~d~~~~--~~~s~~~~v~i~V~dvNd 302 (653)
+|.|++.+.|| |.. ..|. |.|+|+|. |.+ .++++.+.|+|.|.|+||
T Consensus 54 tG~i~~~~~LD~E~~~~~~~~~-----------------------~~V~a~d~----g~~~~~~~~~~~~v~I~V~DvND 106 (419)
T 3ubh_A 54 NGAVRVKKKWDYEELGPEKTID-----------------------FWVIITNM----GHNAGIKYTDNQRVIILVKDVND 106 (419)
T ss_dssp TSEEEESSCCCGGGSCTTCEEE-----------------------EEEEEEC------CCSSSCCEEEEEEEEEEECCCC
T ss_pred CcEEEECCccCccccCccceEE-----------------------EEEEEEeC----CCCCCCCCcceEEEEEEEEECCC
Confidence 68888888888 654 3444 44478762 222 257888999999999999
Q ss_pred CCCeecCCc--eEEEEeCCCCCCcEEEeeeceeeEEeeCCCCcceEEEEEEecCCCcEEEcccceeeeeeEEEEEecCCC
Q psy1887 303 TPPYFDTVQ--YITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLENNNGTFEIWPSVVERKAQFTIRVRNNKN 380 (653)
Q Consensus 303 ~~P~f~~~~--~~~~v~En~~~gt~v~~v~~~~~~a~D~D~g~n~~~~~~~~~~~~~F~I~~~tg~~~~~~~i~l~~~~~ 380 (653)
|+|.|.... |.+.|+|++++|+.|+++ .|+|+|.|.|..|++..++..+.|.|++.+|. |++.+.
T Consensus 107 n~P~F~~~~~~~~~~v~E~~~~gt~v~~v-----~A~D~D~g~n~~y~i~~~~~~~~F~I~~~tG~--------i~~~~~ 173 (419)
T 3ubh_A 107 EPPYFINRPLPMQAVVQLNAPPNTPVFTL-----QARDPDTDHNIHYFIVRDRTGGRFEVDERSGV--------VRTRGT 173 (419)
T ss_dssp SCCEECCSSSSCEEEECTTCCTTCEEEEC-----CEECSSTTCCEEEEEEEESSSSCEEECTTTCE--------EEECSS
T ss_pred CCCcccCCCCcEEEEEeCCCCCCCEEEEE-----EEECCCCCceeEEEEEeCCCCCeEEEeCCceE--------EEEecc
Confidence 999999877 789999999999999984 99999999997787766777789999999997 777899
Q ss_pred CCccCCCeEEEEEEEEECCCCCCCCCceEEEEEEEEEeecCCCCCeecccceEEEeeCCCCCCcEEEEEEEeeCCCCCCc
Q psy1887 381 LDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGG 460 (653)
Q Consensus 381 LD~E~~~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~gt~v~~v~a~D~D~g~n~ 460 (653)
||||....|.|+|+|+|.+.....+.+++++.++|.|.| |||+|.|.+..|.++|+||.++|+.|+++.|+|+| |+
T Consensus 174 ld~e~~~~y~l~V~A~D~g~~~~~~~~~~t~~v~I~V~d-ndn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~d---n~ 249 (419)
T 3ubh_A 174 DLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DR 249 (419)
T ss_dssp SCCCBTCEEEEEEEEEEEEEEC--CCEEECCCEEEEEEE-SCCCCEESSSCEEEEEETTCCTTCEEEECCEECSS---CC
T ss_pred cccccccEEEEEEEEEECCCCccCcccccceEEEEEEEC-CCCCCceecCeeEEEecCCCCCCcEEEEEEEecCC---CC
Confidence 999999999999999998722122357889999999999 99999999999999999999999999999999987 68
Q ss_pred eEEEEEE-cCCCCcceEEeCCCCeEEEEcCccCCccCcc---EEEEEEEEEECCCCCceEEEEEEEEEEecCCCCCeEee
Q psy1887 461 EILYTAI-LGYKNSSLELDAHTGDITIANGQQFDREEAS---EYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQ 536 (653)
Q Consensus 461 ~i~y~i~-~~~~~~~F~Id~~tG~i~~~~~~~lD~E~~~---~~~l~V~a~D~g~~~~~~~~~v~I~V~DvNDn~P~f~~ 536 (653)
.++|+|. .++..++|.|++.+|.|++. ++||||... .|.|+|+|+|.+ +++++++.|+|+|+|+|||+|+|.+
T Consensus 250 ~i~Ysi~~~~~~~~~F~I~~~tG~i~~~--~~LD~E~~~~~~~y~l~V~a~dd~-~~~s~~~~v~I~V~DvNDn~P~f~~ 326 (419)
T 3ubh_A 250 EIRYTLKAQGQGAGTFNIGPTSGIVKLA--KELDFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTIRVTDVNDNAPKFEL 326 (419)
T ss_dssp CCEEEEEESSSCCSSEEECTTTCEEEEC--SCCCTTCTTSCSEEEEEEEEECTT-TSCEEEEEEEEEEECCCCCCCEESS
T ss_pred ceEEEEecCCCCCCcEEEECCCCEEEEC--cccCccccccccEEEEEEEEEeCC-CCcEEEEEEEEEEEccCCCCCcccC
Confidence 8999997 46677899999999999998 899999865 799999999753 4688999999999999999999999
Q ss_pred cCcEE-EEecCCCCCeEEEEEEEEeCCCCCCCCeEEEEEEeCCCCCcEEEEcCCCccceeeEEEEEEeCCCCCc--cceE
Q psy1887 537 TPFEF-VLASDSRNFSERTFIKATDQDAEAPNNIVRYEIISGNYDNKFSLHPETGVPHKWSTTQVRIYPPDSAV--RNIK 613 (653)
Q Consensus 537 ~~y~~-~v~e~~~~g~~v~~v~A~D~D~~~~n~~i~Y~i~~~~~~~~F~Id~~tG~p~~~~~~~v~i~~~~~~~--~~~~ 613 (653)
+.|.+ .|.|++++|+.|++|.|+|+|.| .|++++|+|.. ++|.|++ +|...+ ...++... ..|.
T Consensus 327 ~~~~~~~v~E~~~~gt~v~~v~A~D~D~g-~n~~v~Y~i~~----~~F~Id~-~G~i~~-------~~~ld~E~~~~~y~ 393 (419)
T 3ubh_A 327 PDYQAHNVDEDIPLGTSILRVKAMDSDSG-SNAEIEYLVSD----DHFAVDS-NGIIVN-------NKQLDADNNNAYYE 393 (419)
T ss_dssp SEEEEEEEETTCCTTCEEEECCEECSSCG-GGGCEEEEESC----TTEEECT-TCEEEE-------CSCSSSSCTTCEEE
T ss_pred CcceeEEecCCCCCCCEEEEEEEEeCCCC-CCCEEEEEEcC----CcEEECC-CeEEEE-------CcccCcccCCceEE
Confidence 99987 79999999999999999999987 79999999953 5899998 785321 13444443 3466
Q ss_pred EEecCC
Q psy1887 614 FLVPHS 619 (653)
Q Consensus 614 ~~v~~~ 619 (653)
+.|-..
T Consensus 394 l~V~a~ 399 (419)
T 3ubh_A 394 FIVTAK 399 (419)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 666433
No 10
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=5.7e-49 Score=425.59 Aligned_cols=317 Identities=26% Similarity=0.336 Sum_probs=263.1
Q ss_pred ceeeEEEEEEEEeccCCCCcCCCCC--ceEEecCCCCCCcEEEEEEEecCCCCCCceEEEEEecCCCCCcceEEEcCCCC
Q psy1887 5 NIAGFEVVVVVDDVQDTPPIFINIQ--PVIQLAPNLTMNDVLTKITAIDGDKGHPRTIKYGLVSEGHPMTVFFTINELTG 82 (653)
Q Consensus 5 ~~~~~~v~I~V~DvNDn~P~F~~~~--~~~~V~E~~~~g~~i~~v~A~D~D~g~n~~i~ysl~~~~~~~~~~F~Id~~tG 82 (653)
.++++.|.|+|+|+|||+|.|.... |.++|+|++++|+.|+++.|+|+|.|.| ++|+|..+... ++|.|++.+|
T Consensus 91 ~~~~~~v~I~V~DvNDn~P~F~~~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g~n--~~y~i~~~~~~--~~F~I~~~tG 166 (419)
T 3ubh_A 91 YTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTG--GRFEVDERSG 166 (419)
T ss_dssp CEEEEEEEEEEECCCCSCCEECCSSSSCEEEECTTCCTTCEEEECCEECSSTTCC--EEEEEEEESSS--SCEEECTTTC
T ss_pred CcceEEEEEEEEECCCCCCcccCCCCcEEEEEeCCCCCCCEEEEEEEECCCCCce--eEEEEEeCCCC--CeEEEeCCce
Confidence 4677899999999999999999987 7899999999999999999999999876 89999764322 3788887666
Q ss_pred CCCCccEEEEEEEEeeecCCCceeccccCeEEEEeecCCCCceEEEEEEEecCCCCcceEEEecCCCceEEEEeeccCCC
Q psy1887 83 PKMSPQVFLLVLMCYSVVANYPVFDISTQMRSLLIPASVKLGTIIYRLRASDSDKDYPLTFDATDFGSYVVKIKSLPCSK 162 (653)
Q Consensus 83 ~~~~~~~~~vvi~v~d~Nd~~P~f~~~~~~~~~~v~E~~~~gt~i~~v~a~D~D~~~~~~y~i~~~~~~~f~i~~~~~~~ 162 (653)
.+
T Consensus 167 ~i------------------------------------------------------------------------------ 168 (419)
T 3ubh_A 167 VV------------------------------------------------------------------------------ 168 (419)
T ss_dssp EE------------------------------------------------------------------------------
T ss_pred EE------------------------------------------------------------------------------
Confidence 41
Q ss_pred CCCeeEEEEEEccccCCCceEEEEEEEEECCCCCeeeeEEEEEEecCCCCCCCCCCCCeEEEEeCCCcEEEEeecCC-CC
Q psy1887 163 NSSFCEANVYLDRVLVPGQVFQFRIIVKDTRGDTTTVPTSLTATDAALNINAQFPHIPGVIVVPEVLGTYLLWRHLS-GP 241 (653)
Q Consensus 163 ~~~~~~g~i~l~~~le~~~~~~~~v~v~d~~g~~~~~~~~i~v~~~~~~~~p~~~~~~~~~~i~e~~G~i~~~~~lD-e~ 241 (653)
++.+.|| |.
T Consensus 169 ----------------------------------------------------------------------~~~~~ld~e~ 178 (419)
T 3ubh_A 169 ----------------------------------------------------------------------RTRGTDLFQL 178 (419)
T ss_dssp ----------------------------------------------------------------------EECSSSCCCB
T ss_pred ----------------------------------------------------------------------EEeccccccc
Confidence 1222233 22
Q ss_pred cceEEEEEEEeeCCccccceecCCCcEEEEEEEEEecccCCCCCCCeEEEEEEEEEEccCCCCCeecCCceEEEEeCCCC
Q psy1887 242 KNMYLMREIRLSKPYRELHTVASGQPVILMVLAEEERKDLNEPSPQSSTATIALVFDQAINTPPYFDTVQYITHLDENSP 321 (653)
Q Consensus 242 ~~~y~l~~~~~~~~ld~~~~~~~~~~~~l~V~A~d~~~d~~~~~~~s~~~~v~i~V~dvNd~~P~f~~~~~~~~v~En~~ 321 (653)
...|. |+|+|+|.... ...+.+++++.++|.|.| ||++|.|.+..|.++|+||.+
T Consensus 179 ~~~y~-----------------------l~V~A~D~g~~-~~~~~~~~t~~v~I~V~d-ndn~P~F~~~~y~~~v~En~~ 233 (419)
T 3ubh_A 179 DMEYV-----------------------LYVKAEDQNGK-VDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQK 233 (419)
T ss_dssp TCEEE-----------------------EEEEEEEEEEE-C--CCEEECCCEEEEEEE-SCCCCEESSSCEEEEEETTCC
T ss_pred ccEEE-----------------------EEEEEEECCCC-ccCcccccceEEEEEEEC-CCCCCceecCeeEEEecCCCC
Confidence 22222 23355542100 001246777889999999 999999999999999999999
Q ss_pred CCcEEEeeeceeeEEeeCCCCcceEEEEEE---ecCCCcEEEcccceeeeeeEEEEEecCCCCCccCCC---eEEEEEEE
Q psy1887 322 QGTALIFAESFHTQVTDDNMGKNGIFSLTL---ENNNGTFEIWPSVVERKAQFTIRVRNNKNLDYERTR---TLSFVIVA 395 (653)
Q Consensus 322 ~gt~v~~v~~~~~~a~D~D~g~n~~~~~~~---~~~~~~F~I~~~tg~~~~~~~i~l~~~~~LD~E~~~---~~~l~V~a 395 (653)
+|+.|+++ .|+|+| |+.++|++ ++..++|+|++.+|. |++.++||||... .|.|+|+|
T Consensus 234 ~gt~v~~v-----~A~D~d---n~~i~Ysi~~~~~~~~~F~I~~~tG~--------i~~~~~LD~E~~~~~~~y~l~V~a 297 (419)
T 3ubh_A 234 KDSDIISI-----KAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGI--------VKLAKELDFEDLRQPHVYSLIVTA 297 (419)
T ss_dssp TTCEEEEC-----CEECSS---CCCCEEEEEESSSCCSSEEECTTTCE--------EEECSCCCTTCTTSCSEEEEEEEE
T ss_pred CCcEEEEE-----EEecCC---CCceEEEEecCCCCCCcEEEECCCCE--------EEECcccCccccccccEEEEEEEE
Confidence 99999985 999987 44556655 345689999999997 7889999999876 79999999
Q ss_pred EECCCCCCCCCceEEEEEEEEEeecCCCCCeecccceEE-EeeCCCCCCcEEEEEEEeeCCCCCCceEEEEEEcCCCCcc
Q psy1887 396 KEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTA-KIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSS 474 (653)
Q Consensus 396 ~D~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~-~V~E~~~~gt~v~~v~a~D~D~g~n~~i~y~i~~~~~~~~ 474 (653)
+|.+ +++++.+.|+|+|+|+|||+|.|....|.. .|.|++++|+.|+++.|+|+|.|.|+.++|+|.. ++
T Consensus 298 ~dd~-----~~~s~~~~v~I~V~DvNDn~P~f~~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g~n~~v~Y~i~~----~~ 368 (419)
T 3ubh_A 298 TEDS-----GGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSD----DH 368 (419)
T ss_dssp ECTT-----TSCEEEEEEEEEEECCCCCCCEESSSEEEEEEEETTCCTTCEEEECCEECSSCGGGGCEEEEESC----TT
T ss_pred EeCC-----CCcEEEEEEEEEEEccCCCCCcccCCcceeEEecCCCCCCCEEEEEEEEeCCCCCCCEEEEEEcC----Cc
Confidence 9744 268899999999999999999999999987 7999999999999999999999999999999853 47
Q ss_pred eEEeCCCCeEEEEcCccCCccC-ccEEEEEEEEEECCCCCceEEEEEEEEEEe
Q psy1887 475 LELDAHTGDITIANGQQFDREE-ASEYKFQVEARDMQGLGLRTVVPLQLTILD 526 (653)
Q Consensus 475 F~Id~~tG~i~~~~~~~lD~E~-~~~~~l~V~a~D~g~~~~~~~~~v~I~V~D 526 (653)
|.|++ +|.|++. +.||||. ...|.|+|.|+|+|.|+++++++|+|+|.|
T Consensus 369 F~Id~-~G~i~~~--~~ld~E~~~~~y~l~V~a~D~G~p~~sst~~v~I~v~n 418 (419)
T 3ubh_A 369 FAVDS-NGIIVNN--KQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRVYTKN 418 (419)
T ss_dssp EEECT-TCEEEEC--SCSSSSCTTCEEEEEEEEEECCSSCCEEEEEEEEEEEC
T ss_pred EEECC-CeEEEEC--cccCcccCCceEEEEEEEEECCcCCceeEEEEEEEEec
Confidence 99998 9999998 8999999 689999999999999999999999999986
No 11
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A
Probab=100.00 E-value=1.4e-45 Score=384.16 Aligned_cols=263 Identities=21% Similarity=0.303 Sum_probs=218.2
Q ss_pred EEEeCCCcEEEEeecCC-CCcc---eEEEEEEEeeCCccccceecCCCcEEEEEEEEEecccCCCCCCCeEEEEEEEEEE
Q psy1887 223 IVVPEVLGTYLLWRHLS-GPKN---MYLMREIRLSKPYRELHTVASGQPVILMVLAEEERKDLNEPSPQSSTATIALVFD 298 (653)
Q Consensus 223 ~~i~e~~G~i~~~~~lD-e~~~---~y~l~~~~~~~~ld~~~~~~~~~~~~l~V~A~d~~~d~~~~~~~s~~~~v~i~V~ 298 (653)
|.|++ +|.|++.+.|| |... .+. |.|+|+|+| .+.++++++++.|+|.|.
T Consensus 44 F~i~~-tG~l~~~~~LD~E~~~~~~~~~---------------------~~l~v~a~d----~~~~~~~s~~~~v~I~V~ 97 (316)
T 3ubf_A 44 VTVET-NGAVRVKKKWDYEELGPEKTID---------------------FWVIITNMG----HNAGIKYTDNQRVIILVK 97 (316)
T ss_dssp EEECT-TSEEEESSCCCGGGSCTTCEEE---------------------EEEEEEC-----------CCCEEEEEEEEEE
T ss_pred EEECC-CeEEEECCccChhhcccccceE---------------------EEEEEEEcC----CCCCCcccceEEEEEEEE
Confidence 78888 89999999999 7632 222 223446654 333346899999999999
Q ss_pred ccCCCCCeecCCc--eEEEEeCCCCCCcEEEeeeceeeEEeeCCCCcceEEEEEEecCCCcEEEcccceeeeeeEEEEEe
Q psy1887 299 QAINTPPYFDTVQ--YITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLENNNGTFEIWPSVVERKAQFTIRVR 376 (653)
Q Consensus 299 dvNd~~P~f~~~~--~~~~v~En~~~gt~v~~v~~~~~~a~D~D~g~n~~~~~~~~~~~~~F~I~~~tg~~~~~~~i~l~ 376 (653)
|+|||+|.|.... |.+.|+|++++|+.|+++ .|+|+|.|.|..|++..++..++|.|++.+|. |+
T Consensus 98 DvNDn~P~F~~~~~~y~~~v~En~~~gt~v~~v-----~A~D~D~g~ni~Y~i~~~~~~~~F~Id~~tG~--------i~ 164 (316)
T 3ubf_A 98 DVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTL-----QARDPDTDHNIHYFIVRDRTGGRFEVDERSGV--------VR 164 (316)
T ss_dssp CTTCCCCEECCSSSSEEEEECTTCCTTCEEEEC-----CEECSSTTCCEEEEEEEEESSSCEEECTTTCE--------EE
T ss_pred ECCCCCCccCCCCCCEEEEEeCCCCCCCEEEEE-----EEECCCCCCceEEEEEeCCCCCEEEEECCccE--------EE
Confidence 9999999999886 899999999999999985 99999999996676665667789999999997 88
Q ss_pred cCCCCCccCCCeEEEEEEEEECCCCCCCCCceEEEEEEEEEeecCCCCCeecccceEEEeeCCCCCCcEEEEEEEeeCCC
Q psy1887 377 NNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDT 456 (653)
Q Consensus 377 ~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~gt~v~~v~a~D~D~ 456 (653)
+.++||||....|.|+|+|+|.+.....+++++++.|+|.|.| |||+|.|.+..|.++|+|+.++|+.|+++.|+|+|
T Consensus 165 ~~~~lD~e~~~~y~l~V~A~D~g~~~~~~~~~~~~~v~I~V~d-nDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D- 242 (316)
T 3ubf_A 165 TRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA- 242 (316)
T ss_dssp ECSSCCCCTTCEEEEEEEEEESCC-------CBCCCEEEEEEE-SCCCCEESSSSEEEEEETTCCTTCEEEECCEECTT-
T ss_pred ECCcCCcccCcEEEEEEEEEeCCCCCCCccccceEEEEEEEEc-CCCCCEEcCCCceEEEeCCCCCCCEEEEEEEEeCC-
Confidence 8999999999999999999998732223467889999999999 99999999999999999999999999999999998
Q ss_pred CCCceEEEEEE-cCCCCcceEEeCCCCeEEEEcCccCCccCc---cEEEEEEEEEECCCCCceEEEEEEEEEEecCCCC
Q psy1887 457 NLGGEILYTAI-LGYKNSSLELDAHTGDITIANGQQFDREEA---SEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNA 531 (653)
Q Consensus 457 g~n~~i~y~i~-~~~~~~~F~Id~~tG~i~~~~~~~lD~E~~---~~~~l~V~a~D~g~~~~~~~~~v~I~V~DvNDn~ 531 (653)
++.++|+|. .++..++|.|++.+|.|++. ++||||.. ..|.|+|+|+|.++ ++++++.|+|+|+|+||||
T Consensus 243 --n~~i~Y~i~~~~~~~~~F~Id~~tG~i~~~--~~LD~E~~~~~~~y~l~V~A~dd~g-~~~~~~~v~I~V~DvNDn~ 316 (316)
T 3ubf_A 243 --DREIRYTLKAQGQGAGTFNIGPTSGIVKLA--KELDFEDLRQPHVYSLIVTATEDSG-GFSTSVDLTIRVTDVNDNA 316 (316)
T ss_dssp --CCCEEEEEEEESSCTTTEEECTTTCEEEEC--SCCCSSCTTSCSEEEEEEEEEESSS-SCEEEEEEEEEEECC----
T ss_pred --CCEEEEEEEcCCCCCCeEEEECCeEEEEEC--CcCCccccCCCceEEEEEEEEECCC-CCEEEEEEEEEEEecCCCC
Confidence 688999997 67778899999999999998 89999998 79999999995333 5899999999999999986
No 12
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}
Probab=100.00 E-value=2.4e-47 Score=397.06 Aligned_cols=298 Identities=22% Similarity=0.340 Sum_probs=256.4
Q ss_pred EEEeecC--CCCceEEEEEEEecCCCC-cceEEEecCCCceEEEEeeccCCCCCCeeEEEEEEccccCCCceEEEEEEEE
Q psy1887 114 SLLIPAS--VKLGTIIYRLRASDSDKD-YPLTFDATDFGSYVVKIKSLPCSKNSSFCEANVYLDRVLVPGQVFQFRIIVK 190 (653)
Q Consensus 114 ~~~v~E~--~~~gt~i~~v~a~D~D~~-~~~~y~i~~~~~~~f~i~~~~~~~~~~~~~g~i~l~~~le~~~~~~~~v~v~ 190 (653)
.++|+|+ .+.|+.|+++. +|+|.+ ..++|+|.+.+
T Consensus 6 ~~~v~E~~~~~~~~~v~~va-~D~D~g~~~i~Y~l~~~~----------------------------------------- 43 (322)
T 2a62_A 6 QMFVLEEFSGPEPILVGRLH-TDLDPGSKKIKYILSGDG----------------------------------------- 43 (322)
T ss_dssp CEECCCSCCCSSCEECCCCC-CCCCCSSCCCEEEEEETT-----------------------------------------
T ss_pred eeeeccccCCCCCEEEEEEE-EcCCCCCCEEEEEEECCC-----------------------------------------
Confidence 6889999 89999999996 899986 46777662110
Q ss_pred ECCCCCeeeeEEEEEEecCCCCCCCCCCCCeEEEEeCCCcEEEEeecCC-CCcceEEEEEEEeeCCccccceecCCCcEE
Q psy1887 191 DTRGDTTTVPTSLTATDAALNINAQFPHIPGVIVVPEVLGTYLLWRHLS-GPKNMYLMREIRLSKPYRELHTVASGQPVI 269 (653)
Q Consensus 191 d~~g~~~~~~~~i~v~~~~~~~~p~~~~~~~~~~i~e~~G~i~~~~~lD-e~~~~y~l~~~~~~~~ld~~~~~~~~~~~~ 269 (653)
....|.|++.+|.|++.+.|| |....|.|.+
T Consensus 44 ----------------------------~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v-------------------- 75 (322)
T 2a62_A 44 ----------------------------AGTIFQINDITGDIHAIKRLDREEKAEYTLTA-------------------- 75 (322)
T ss_dssp ----------------------------BTTTEEEETTTTEEEECSCCCTTTCSBCCEEE--------------------
T ss_pred ----------------------------CCCcEEEeCCcCEEEEeccCCcccccEEEEEE--------------------
Confidence 012378888899999999999 8877777766
Q ss_pred EEEEEEEecccCCCCCCCeEEEEEEEEEEccCCCCCeecCCceEEEEeCCCCCCcEEEeeeceeeEEeeCCC---CcceE
Q psy1887 270 LMVLAEEERKDLNEPSPQSSTATIALVFDQAINTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNM---GKNGI 346 (653)
Q Consensus 270 l~V~A~d~~~d~~~~~~~s~~~~v~i~V~dvNd~~P~f~~~~~~~~v~En~~~gt~v~~v~~~~~~a~D~D~---g~n~~ 346 (653)
+|+| .++.+++++++.++|.|.|+|||+|.|....|.++|+|++++|+.|+++ .|+|+|. |.|++
T Consensus 76 ---~a~D----~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v-----~A~D~D~~~~G~n~~ 143 (322)
T 2a62_A 76 ---QAVD----FETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNV-----TATDADDPVYGNSAK 143 (322)
T ss_dssp ---EEEC----TTTCSEEEEEEEECEECCCCSCSCBCCSSSEEEEEECSSCCTTCBCCCC-----CCCBCSCSSSTTSSC
T ss_pred ---EEEE----CCCCCcccceEEEEEEEEecCCCCCccCCCceEEEEeCCCCCCCEEEEE-----EEEeCCCCCCCccEE
Confidence 8875 3334457888999999999999999999999999999999999999984 9999996 88889
Q ss_pred EEEEEecCCCcEEEcccceeeeeeEEEEEecC-CCCCccCCCeEEEEEEEEECCCCCCCCCceEEEEEEEEEeecCCCCC
Q psy1887 347 FSLTLENNNGTFEIWPSVVERKAQFTIRVRNN-KNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPP 425 (653)
Q Consensus 347 ~~~~~~~~~~~F~I~~~tg~~~~~~~i~l~~~-~~LD~E~~~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvNDn~P 425 (653)
++|++.+..+.|.|++.+|. |++. ++||||+...|.|+|+|+|.+.+ .+++++.+.|+|+|.|+|||+|
T Consensus 144 i~Y~i~~~~~~F~Id~~tG~--------i~~~~~~LD~E~~~~y~l~V~a~D~g~p--~~~~s~~~~v~I~V~DvNDn~P 213 (322)
T 2a62_A 144 LVYSILEGQPYFSIEPETAI--------IKTALPNMDREAKEEYLVVIQAKDMGGH--SGGLSGTTTLTVTLTDVNDNPP 213 (322)
T ss_dssp EEEEEEECTTTEEECTTTCC--------EEECSSCCCGGGCSEEEEEEEEEESCSS--SSCCBCCEEEEEEECCCCCCCC
T ss_pred EEEEEccCCCCEEEecCCCE--------EEecccCCCcccCCeEEEEEEEEECCCC--CCCceeEEEEEEEEEecCCCCC
Confidence 99998776789999999997 6666 89999999999999999998821 1248999999999999999999
Q ss_pred eecccceEEEeeCCCCCCcEEEEEEEeeCCCCCCceEEEEEEcCCCCcceEEe----CCCCeEEEEcCccCCccCccEEE
Q psy1887 426 VFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELD----AHTGDITIANGQQFDREEASEYK 501 (653)
Q Consensus 426 ~f~~~~y~~~V~E~~~~gt~v~~v~a~D~D~g~n~~i~y~i~~~~~~~~F~Id----~~tG~i~~~~~~~lD~E~~~~~~ 501 (653)
.|.+..|.++|+|++++|+.|+++.|+|+|.|.|++++|+|..++..+.|.|+ +.+|.|+++ ++||||....|.
T Consensus 214 ~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~g~n~~i~Y~i~~g~~~~~F~I~~d~~~~tG~i~~~--~~LD~E~~~~y~ 291 (322)
T 2a62_A 214 KFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLR--KPLDFETKKSYT 291 (322)
T ss_dssp CCSCSEEEEEECSCCSSCCEEEEEECCCSSCGGGTCCEEEEC---CCSSBCCBCCTTTSEEEEEBC--SCCCCSSCCEEE
T ss_pred eecCCCceeEeECCCCCCcEEEEEEEEeCCCCCCceEEEEEECCCCCCcEEEeccCCCceEEEEEC--CcCCcccCCeEE
Confidence 99999999999999999999999999999999999999999888888899999 468999998 899999999999
Q ss_pred EEEEEEECCCCC-------ceEEEEEEEEEE
Q psy1887 502 FQVEARDMQGLG-------LRTVVPLQLTIL 525 (653)
Q Consensus 502 l~V~a~D~g~~~-------~~~~~~v~I~V~ 525 (653)
|+|+|+|+|.|+ ++++++|+|+|+
T Consensus 292 l~V~A~D~g~pp~~~~~~~~s~~~~V~I~V~ 322 (322)
T 2a62_A 292 LKVEAANIHIDPRFSSRGPFKDTATVKIVVE 322 (322)
T ss_dssp EEEEEECCCSSCTTSSCCCCCCCCEEEEEEC
T ss_pred EEEEEEECCCCCccccCCCcccEEEEEEEEC
Confidence 999999998764 467888998874
No 13
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}
Probab=100.00 E-value=9.1e-46 Score=385.19 Aligned_cols=278 Identities=27% Similarity=0.389 Sum_probs=238.0
Q ss_pred eEEEEeCC--CCCCcEEEeeeceeeEEeeCCCCcceEEEEEEec--CCCcEEEcccceeeeeeEEEEEecCCCCCccCCC
Q psy1887 312 YITHLDEN--SPQGTALIFAESFHTQVTDDNMGKNGIFSLTLEN--NNGTFEIWPSVVERKAQFTIRVRNNKNLDYERTR 387 (653)
Q Consensus 312 ~~~~v~En--~~~gt~v~~v~~~~~~a~D~D~g~n~~~~~~~~~--~~~~F~I~~~tg~~~~~~~i~l~~~~~LD~E~~~ 387 (653)
+.++|.|+ .+.|+.|+++ ++|+|.| ++.++|++.+ ..+.|.|++.+|. |++.++||||+.+
T Consensus 5 ~~~~v~E~~~~~~~~~v~~v------a~D~D~g-~~~i~Y~l~~~~~~~~F~Id~~tG~--------i~~~~~LDrE~~~ 69 (322)
T 2a62_A 5 NQMFVLEEFSGPEPILVGRL------HTDLDPG-SKKIKYILSGDGAGTIFQINDITGD--------IHAIKRLDREEKA 69 (322)
T ss_dssp CCEECCCSCCCSSCEECCCC------CCCCCCS-SCCCEEEEEETTBTTTEEEETTTTE--------EEECSCCCTTTCS
T ss_pred ceeeeccccCCCCCEEEEEE------EEcCCCC-CCEEEEEEECCCCCCcEEEeCCcCE--------EEEeccCCccccc
Confidence 35789999 8899999873 5899988 5667777643 3468999999997 7789999999999
Q ss_pred eEEEEEEEEECCCCCCCCCceEEEEEEEEEeecCCCCCeecccceEEEeeCCCCCCcEEEEEEEeeCCC---CCCceEEE
Q psy1887 388 TLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDT---NLGGEILY 464 (653)
Q Consensus 388 ~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~gt~v~~v~a~D~D~---g~n~~i~y 464 (653)
.|.|+|+|+|.+ ..+++++.+.|+|+|.|+|||+|.|.+..|.++|+|++++|+.|+++.|+|+|. |.|++++|
T Consensus 70 ~y~l~v~a~D~~---~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~~G~n~~i~Y 146 (322)
T 2a62_A 70 EYTLTAQAVDFE---TNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVY 146 (322)
T ss_dssp BCCEEEEEECTT---TCSEEEEEEEECEECCCCSCSCBCCSSSEEEEEECSSCCTTCBCCCCCCCBCSCSSSTTSSCEEE
T ss_pred EEEEEEEEEECC---CCCcccceEEEEEEEEecCCCCCccCCCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCccEEEEE
Confidence 999999999986 234678899999999999999999999999999999999999999999999996 88999999
Q ss_pred EEEcCCCCcceEEeCCCCeEEEEcCccCCccCccEEEEEEEEEECCCCC--ceEEEEEEEEEEecCCCCCeEeecCcEEE
Q psy1887 465 TAILGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLG--LRTVVPLQLTILDVNDNAPIFVQTPFEFV 542 (653)
Q Consensus 465 ~i~~~~~~~~F~Id~~tG~i~~~~~~~lD~E~~~~~~l~V~a~D~g~~~--~~~~~~v~I~V~DvNDn~P~f~~~~y~~~ 542 (653)
+|..++ ..|.|++.+|.|++.. +.||||....|.|+|+|+|+|.|+ ++++++|+|+|.|+|||+|+|.+..|.+.
T Consensus 147 ~i~~~~--~~F~Id~~tG~i~~~~-~~LD~E~~~~y~l~V~a~D~g~p~~~~s~~~~v~I~V~DvNDn~P~F~~~~y~~~ 223 (322)
T 2a62_A 147 SILEGQ--PYFSIEPETAIIKTAL-PNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFS 223 (322)
T ss_dssp EEEECT--TTEEECTTTCCEEECS-SCCCGGGCSEEEEEEEEEESCSSSSCCBCCEEEEEEECCCCCCCCCCSCSEEEEE
T ss_pred EEccCC--CCEEEecCCCEEEecc-cCCCcccCCeEEEEEEEEECCCCCCCceeEEEEEEEEEecCCCCCeecCCCceeE
Confidence 998874 5899999999998752 579999999999999999998874 88999999999999999999999999999
Q ss_pred EecCCCCCeEEEEEEEEeCCCCCCCCeEEEEEEeCCCCCcEEEEc----CCCccceeeEEEEEE-eCCCCC-ccceEEEe
Q psy1887 543 LASDSRNFSERTFIKATDQDAEAPNNIVRYEIISGNYDNKFSLHP----ETGVPHKWSTTQVRI-YPPDSA-VRNIKFLV 616 (653)
Q Consensus 543 v~e~~~~g~~v~~v~A~D~D~~~~n~~i~Y~i~~~~~~~~F~Id~----~tG~p~~~~~~~v~i-~~~~~~-~~~~~~~v 616 (653)
|.|+++.|+.|++|.|+|+|.| .|+.++|+|.+|+..++|.|+. .+|.. ++ .++++. ...|.+.|
T Consensus 224 v~En~~~gt~v~~v~A~D~D~g-~n~~i~Y~i~~g~~~~~F~I~~d~~~~tG~i--------~~~~~LD~E~~~~y~l~V 294 (322)
T 2a62_A 224 VPEDVVLGTAIGRVKANDQDIG-ENAQSSYDIIDGDGTALFEITSDAQAQDGVI--------RLRKPLDFETKKSYTLKV 294 (322)
T ss_dssp ECSCCSSCCEEEEEECCCSSCG-GGTCCEEEEC---CCSSBCCBCCTTTSEEEE--------EBCSCCCCSSCCEEEEEE
T ss_pred eECCCCCCcEEEEEEEEeCCCC-CCceEEEEEECCCCCCcEEEeccCCCceEEE--------EECCcCCcccCCeEEEEE
Confidence 9999999999999999999987 7899999999888889999994 34543 33 234443 45566666
Q ss_pred cCC
Q psy1887 617 PHS 619 (653)
Q Consensus 617 ~~~ 619 (653)
...
T Consensus 295 ~A~ 297 (322)
T 2a62_A 295 EAA 297 (322)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 14
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A
Probab=100.00 E-value=3.5e-42 Score=358.57 Aligned_cols=266 Identities=21% Similarity=0.278 Sum_probs=217.1
Q ss_pred EEEecCCCcEEEcccceeeeeeEEEEEecCCCCCccCC-----CeEEEEEEEEECCCCCCCCCceEEEEEEEEEeecCCC
Q psy1887 349 LTLENNNGTFEIWPSVVERKAQFTIRVRNNKNLDYERT-----RTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDN 423 (653)
Q Consensus 349 ~~~~~~~~~F~I~~~tg~~~~~~~i~l~~~~~LD~E~~-----~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvNDn 423 (653)
|++....++|.|++ +|. |++.++||||+. ..|.|+|+|.|++ ..+++++.+.|+|.|+|+|||
T Consensus 35 f~i~~~~~~F~i~~-tG~--------l~~~~~LD~E~~~~~~~~~~~l~v~a~d~~---~~~~~s~~~~v~I~V~DvNDn 102 (316)
T 3ubf_A 35 FKIRDDNPWVTVET-NGA--------VRVKKKWDYEELGPEKTIDFWVIITNMGHN---AGIKYTDNQRVIILVKDVNDE 102 (316)
T ss_dssp EEESSCCSSEEECT-TSE--------EEESSCCCGGGSCTTCEEEEEEEEEC----------CCCEEEEEEEEEECTTCC
T ss_pred EEEeCCCCeEEECC-CeE--------EEECCccChhhcccccceEEEEEEEEcCCC---CCCcccceEEEEEEEEECCCC
Confidence 33334456889998 887 888999999984 5788888888877 123678999999999999999
Q ss_pred CCeecccc--eEEEeeCCCCCCcEEEEEEEeeCCCCCCceEEEEEEcCCCCcceEEeCCCCeEEEEcCccCCccCccEEE
Q psy1887 424 PPVFTATL--YTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQFDREEASEYK 501 (653)
Q Consensus 424 ~P~f~~~~--y~~~V~E~~~~gt~v~~v~a~D~D~g~n~~i~y~i~~~~~~~~F~Id~~tG~i~~~~~~~lD~E~~~~~~ 501 (653)
+|.|.... |.+.|+|++++|+.|+++.|+|+|.|.| ++|+|..++..+.|.|++.+|.|++. ++||||....|.
T Consensus 103 ~P~F~~~~~~y~~~v~En~~~gt~v~~v~A~D~D~g~n--i~Y~i~~~~~~~~F~Id~~tG~i~~~--~~lD~e~~~~y~ 178 (316)
T 3ubf_A 103 PPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTR--GTDLFQLDMEYV 178 (316)
T ss_dssp CCEECCSSSSEEEEECTTCCTTCEEEECCEECSSTTCC--EEEEEEEEESSSCEEECTTTCEEEEC--SSCCCCTTCEEE
T ss_pred CCccCCCCCCEEEEEeCCCCCCCEEEEEEEECCCCCCc--eEEEEEeCCCCCEEEEECCccEEEEC--CcCCcccCcEEE
Confidence 99999887 8999999999999999999999999876 99999888778899999999999998 899999999999
Q ss_pred EEEEEEECCC----CCceEEEEEEEEEEecCCCCCeEeecCcEEEEecCCCCCeEEEEEEEEeCCCCCCCCeEEEEEE-e
Q psy1887 502 FQVEARDMQG----LGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDAEAPNNIVRYEII-S 576 (653)
Q Consensus 502 l~V~a~D~g~----~~~~~~~~v~I~V~DvNDn~P~f~~~~y~~~v~e~~~~g~~v~~v~A~D~D~~~~n~~i~Y~i~-~ 576 (653)
|+|+|+|+|+ +++++++.|+|.|.| |||+|+|.++.|.+.|.|++++|+.|++|.|+|+| |+.++|+|. .
T Consensus 179 l~V~A~D~g~~~~~~~~~~~~~v~I~V~d-nDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D----n~~i~Y~i~~~ 253 (316)
T 3ubf_A 179 LYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA----DREIRYTLKAQ 253 (316)
T ss_dssp EEEEEEESCC-------CBCCCEEEEEEE-SCCCCEESSSSEEEEEETTCCTTCEEEECCEECTT----CCCEEEEEEEE
T ss_pred EEEEEEeCCCCCCCccccceEEEEEEEEc-CCCCCEEcCCCceEEEeCCCCCCCEEEEEEEEeCC----CCEEEEEEEcC
Confidence 9999999985 457888999999999 99999999999999999999999999999999998 467999998 6
Q ss_pred CCCCCcEEEEcCCCccceeeEEEEEEeCCCCCc----cceEEEecCCccchhccchhheeeeecCcEEEEEecCCCC
Q psy1887 577 GNYDNKFSLHPETGVPHKWSTTQVRIYPPDSAV----RNIKFLVPHSQAQLERKQLEDILSEMSGGRVSVVNTRPHY 649 (653)
Q Consensus 577 ~~~~~~F~Id~~tG~p~~~~~~~v~i~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~~~d~~~~~ 649 (653)
++..++|.|++.+|...+ ...++... ..|.+.|....+.. .+.+.+...|+|.|++||+
T Consensus 254 ~~~~~~F~Id~~tG~i~~-------~~~LD~E~~~~~~~y~l~V~A~dd~g-------~~~~~~~v~I~V~DvNDn~ 316 (316)
T 3ubf_A 254 GQGAGTFNIGPTSGIVKL-------AKELDFEDLRQPHVYSLIVTATEDSG-------GFSTSVDLTIRVTDVNDNA 316 (316)
T ss_dssp SSCTTTEEECTTTCEEEE-------CSCCCSSCTTSCSEEEEEEEEEESSS-------SCEEEEEEEEEEECC----
T ss_pred CCCCCeEEEECCeEEEEE-------CCcCCccccCCCceEEEEEEEEECCC-------CCEEEEEEEEEEEecCCCC
Confidence 788899999999996422 23556554 45777776542111 2456666899999999984
No 15
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A
Probab=100.00 E-value=4.3e-38 Score=307.94 Aligned_cols=205 Identities=26% Similarity=0.398 Sum_probs=184.2
Q ss_pred CCCCeecCCceE--EEEeCCCCCCcEEEeeeceeeEEeeCCCCcceEEEEEEecCCCcEEEcccceeeeeeEEEEEecCC
Q psy1887 302 NTPPYFDTVQYI--THLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLENNNGTFEIWPSVVERKAQFTIRVRNNK 379 (653)
Q Consensus 302 d~~P~f~~~~~~--~~v~En~~~gt~v~~v~~~~~~a~D~D~g~n~~~~~~~~~~~~~F~I~~~tg~~~~~~~i~l~~~~ 379 (653)
|++|.|....|. ++|+|++++|+.|+++ .|+|+|.+. ..|++..++..++|.|++.+|. |++.+
T Consensus 3 n~~P~F~~~~y~~~~~V~E~~~~Gt~v~~v-----~A~D~D~~~-~~y~i~~~~~~~~F~Id~~tG~--------i~~~~ 68 (210)
T 3mvs_A 3 NRLPFFTNHFFDTYLLISEDTPVGSSVTQL-----LARDMDNDP-LVFGVSGEEASRFFAVEPDTGV--------VWLRQ 68 (210)
T ss_dssp CCCCEECCGGGTSCEEEETTCCTTCEEEEC-----CEECTTCCC-CEEEEESHHHHHHEEECTTTCE--------EEESS
T ss_pred CCCCccCCCccceEEEEeCCCCCCCEEEEE-----EEEeCCCCc-EEEEEeCCCCCCcEEEeCCCCE--------EEECC
Confidence 569999999897 7999999999999984 999999653 2344433344578999999997 78899
Q ss_pred CCCccCCCeEEEEEEEEECCCCCCCCCceEEEEEEEEEeecCCCCCeecccceEEEeeCCCCCCcEEEEEEEeeCCCCCC
Q psy1887 380 NLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLG 459 (653)
Q Consensus 380 ~LD~E~~~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~gt~v~~v~a~D~D~g~n 459 (653)
+||||+.+.|.|+|.|+|.+ ..+++.|+|+|.|+|||+|.|....|.+.|+|+.++|+.|+++.|+|+|.|.|
T Consensus 69 ~LD~E~~~~y~l~v~a~D~~-------~~~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~gt~v~~v~A~D~D~g~n 141 (210)
T 3mvs_A 69 PLDRETKSEFTVEFSVSDHQ-------GVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAG 141 (210)
T ss_dssp CCCTTTCCEEEEEEEEECSS-------CEEEEEEEEEEECCCCCCCEECSCSEEEEEETTCCTTCEEEECCEECCSSGGG
T ss_pred ccCCcccceEEEEEEEEeCC-------CCEEEEEEEEEEeCCCCCCcCCCceEEEEEECCCCCCCEEEEEEEEeCCCCCC
Confidence 99999999999999999987 24678999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEcCCCCcceEEeCCCCeEEEEcCccCCccCccEEEEEEEEEECC-CCCceEEEEEEEEEEecCCCC
Q psy1887 460 GEILYTAILGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQ-GLGLRTVVPLQLTILDVNDNA 531 (653)
Q Consensus 460 ~~i~y~i~~~~~~~~F~Id~~tG~i~~~~~~~lD~E~~~~~~l~V~a~D~g-~~~~~~~~~v~I~V~DvNDn~ 531 (653)
+.++|+|..+ .++|.|++.+|.|++. ++||||....|.|+|+|+|+| .+++++++.|+|+|+|+||||
T Consensus 142 ~~v~Y~i~~~--~~~F~Id~~tG~i~~~--~~LD~E~~~~y~l~V~a~D~g~~~~~s~~~~v~I~V~DvND~~ 210 (210)
T 3mvs_A 142 GSVLYSFQPP--SPFFAIDSARGIVTVI--QELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDMD 210 (210)
T ss_dssp GCEEEEESSC--CSSEEECTTTCEEEEC--SCCCTTTCSEEEEEEEEEECCSSSCCEEEEEEEEEEECCCCCC
T ss_pred ceEEEEEeCC--CCCEEEeCCcEEEEEC--CcCCCcccceEEEEEEEEECCCCCCCEEEEEEEEEEEccCCCC
Confidence 9999998654 4689999999999998 899999999999999999998 468999999999999999986
No 16
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.7e-40 Score=327.25 Aligned_cols=210 Identities=18% Similarity=0.177 Sum_probs=184.7
Q ss_pred eecCCceEEEEeCCCCCCcEEEeeeceeeEEeeCCCCc--ceEEE------EEEe-cCCCcEEEcccceeeeeeEEEEEe
Q psy1887 306 YFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGK--NGIFS------LTLE-NNNGTFEIWPSVVERKAQFTIRVR 376 (653)
Q Consensus 306 ~f~~~~~~~~v~En~~~gt~v~~v~~~~~~a~D~D~g~--n~~~~------~~~~-~~~~~F~I~~~tg~~~~~~~i~l~ 376 (653)
.|.+..|.++|+|++++|+.|+++ .|+|+|.|. +.++. |++. ...++|.|++.+|. |+
T Consensus 2 ~F~~~~Y~~~V~E~~~~Gt~v~~v-----~A~D~D~g~~~~~~i~~~~~~~y~i~~~~~~~F~Id~~tG~--------i~ 68 (246)
T 2x2u_A 2 YFSRDAYWEKLYVDQAAGTPLLYV-----HALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGL--------LY 68 (246)
T ss_dssp EESCSEEEEEEETTBCTTCEEEEC-----CEECSSTTCCCCCEECSEEECGGGCEEEECCSEEECTTTCE--------EE
T ss_pred CccCCceEEEeeCCCCCCCEEEEE-----EEEcCCCCCcceEEEeeccccceeccCCCCCEEEECCCcEE--------EE
Confidence 588999999999999999999985 999999865 33333 3332 24578999999997 78
Q ss_pred cCCCCCccCCCeE------------EEEEEEEECCCCCCCC--CceEEEEEEEEEeecCCCCCe----------ecccce
Q psy1887 377 NNKNLDYERTRTL------------SFVIVAKEISSDSSSN--LLSSQAPVLVYINDVNDNPPV----------FTATLY 432 (653)
Q Consensus 377 ~~~~LD~E~~~~~------------~l~V~a~D~~~~~~~~--~~s~~~~v~I~V~DvNDn~P~----------f~~~~y 432 (653)
+.++||||..+.| .|+|.|+|.+ .+ ++++++.|+|+|+|+|||+|+ |.+..|
T Consensus 69 ~~~~LDrE~~~~y~~~~~G~p~~~~~l~V~a~D~g----~~~~~~~~~~~v~I~V~DvNDn~P~~~~~~~~~~~F~~~~y 144 (246)
T 2x2u_A 69 LQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTS----LREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRP 144 (246)
T ss_dssp ESSCBCHHHHHHHHHTSTTSCCCEEEEEEECC-----------CCCTTTEEEEEEEEESSCCCCGGGCCHHHHHSCSSCC
T ss_pred ECCcCChhHhhhhccccCCCcccceEEEEEEEcCC----CCCCcccceEEEEEEEEECCCCCCccccccccccccCCCcE
Confidence 8999999999999 9999999988 33 578889999999999999999 999999
Q ss_pred EEEeeCCCCCCcEEEEEEEeeCCCCCCceEEEEEEcCCCCcceEEeCCCCeEEEEcCccCCccCccEEEEEEEEEE-CCC
Q psy1887 433 TAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARD-MQG 511 (653)
Q Consensus 433 ~~~V~E~~~~gt~v~~v~a~D~D~g~n~~i~y~i~~~~~~~~F~Id~~tG~i~~~~~~~lD~E~~~~~~l~V~a~D-~g~ 511 (653)
.++|+|+.++|+.|+++.|+|+|.|.|++++|+|..++ ...|.|++.+|.|++. ++||||....|.|+|.|+| .|+
T Consensus 145 ~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~-~~~F~Id~~tG~i~~~--~~LDrE~~~~y~l~V~A~d~dg~ 221 (246)
T 2x2u_A 145 SFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGE-GLPFRSAPDSLEVSTR--WALDREQREKYELVAVCTVHAGA 221 (246)
T ss_dssp CEEEEBTSCCCEEEECSCHHHHHHCTTSCEEEEEESCT-TSSEECCTTCCEEEES--SCBCTTTCSEEEEEEEEEEC---
T ss_pred EEEEECCCCCCcEEEEEEEEcCCCCCCcEEEEEEccCC-CCCEEEECCcCEEEeC--CccCccccceEEEEEEEEecCCC
Confidence 99999999999999999999999999999999998875 6799999999999998 8999999999999999998 566
Q ss_pred CCceEEEEEEEEEEecCCCCCeEe
Q psy1887 512 LGLRTVVPLQLTILDVNDNAPIFV 535 (653)
Q Consensus 512 ~~~~~~~~v~I~V~DvNDn~P~f~ 535 (653)
|+++++++|+|+|+|+|||+|+|.
T Consensus 222 p~~ss~~~v~I~V~DvNDn~P~F~ 245 (246)
T 2x2u_A 222 REEVVMVPFPVTVYDEDDSAPEFE 245 (246)
T ss_dssp CCEEEEEEEEEEEECSSCCSCCCC
T ss_pred CcceEEEEEEEEEEEeCCCCCccC
Confidence 889999999999999999999996
No 17
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}
Probab=100.00 E-value=4.3e-37 Score=301.14 Aligned_cols=201 Identities=26% Similarity=0.411 Sum_probs=174.2
Q ss_pred eEEEEeCCC--CCCcEEEeeeceeeEEeeCCCCcceEEEEEEecC--CCcEEEcccceeeeeeEEEEEecCCCCCccCCC
Q psy1887 312 YITHLDENS--PQGTALIFAESFHTQVTDDNMGKNGIFSLTLENN--NGTFEIWPSVVERKAQFTIRVRNNKNLDYERTR 387 (653)
Q Consensus 312 ~~~~v~En~--~~gt~v~~v~~~~~~a~D~D~g~n~~~~~~~~~~--~~~F~I~~~tg~~~~~~~i~l~~~~~LD~E~~~ 387 (653)
|.+.|.||. |.|+.|+. .|+|+|.| ++.++|++.+. ...|+|++.+|. |++.++||||+.+
T Consensus 6 ~~~~v~En~~~p~~~~v~~------va~D~D~g-n~~i~Y~l~~~~~~~~F~Id~~tG~--------i~~~~~LDrE~~~ 70 (215)
T 2a4e_A 6 NQFFVIEEYTGPDPVLVGR------LHSDIDSG-DGNIKYILSGEGAGTIFVIDDKSGN--------IHATKTLDREERA 70 (215)
T ss_dssp CEEEEETTCCSSSCEEEEE------CCCTTCCS-SSCEEEEEEETTBTTTEEECTTTCE--------EEECSCCCTTTCS
T ss_pred eeEEEeccCCCCCCEEEEE------EEECCCCC-CCeEEEEEECCCCCCeEEEECCceE--------EEECCccCCccCC
Confidence 678999994 67999986 47999998 67778887443 368999999997 7788999999999
Q ss_pred eEEEEEEEEECCCCCCCCCceEEEEEEEEEeecCCCCCeecccceEEEeeCCCCCCcEEEEEEEeeCCC---CCCceEEE
Q psy1887 388 TLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDT---NLGGEILY 464 (653)
Q Consensus 388 ~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~gt~v~~v~a~D~D~---g~n~~i~y 464 (653)
.|.|+|+|+|.+ ..+++++.+.|+|+|.|+|||+|.|.+..|.++|+|++++|+.|++++|+|+|. |.|++++|
T Consensus 71 ~y~l~v~a~D~~---~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~Gt~v~~v~A~D~D~~~~G~n~~i~Y 147 (215)
T 2a4e_A 71 QYTLMAQAVDRD---TNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVY 147 (215)
T ss_dssp EEEEEEEEEETT---TCCEEEEEEEEEEEEECCCCCCCEESSSSEEEEEETTCCTTCEEEECCEECSSCTTTCSSSCCEE
T ss_pred EEEEEEEEEECC---CCCcccccEEEEEEEeeCCCCCCCccCCceEEEEECCCCCCCEEEEEEEEECCCCCCCCceEEEE
Confidence 999999999987 224688999999999999999999999999999999999999999999999997 88999999
Q ss_pred EEEcCCCCcceEEeCCCCeEEEEcCccCCccCccEEEEEEEEEECCCC--CceEEEEEEEEEEecCCCCCe
Q psy1887 465 TAILGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGL--GLRTVVPLQLTILDVNDNAPI 533 (653)
Q Consensus 465 ~i~~~~~~~~F~Id~~tG~i~~~~~~~lD~E~~~~~~l~V~a~D~g~~--~~~~~~~v~I~V~DvNDn~P~ 533 (653)
+|..++ ..|.|++.+|.|+++. ++||||....|.|.|+|+|+|.| +++++++|+|+|+|+|||+|+
T Consensus 148 ~i~~~~--~~F~Id~~tG~I~~~~-~~LD~E~~~~y~l~V~A~D~g~~~~~~s~~~~v~I~V~DvNDn~P~ 215 (215)
T 2a4e_A 148 SILEGQ--PYFSVEAQTGIIRTAL-PNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDDK 215 (215)
T ss_dssp EEEEST--TTEEECTTTCEEEECS-SCCCSSSCSEEEEEEEEETTTTCTTCCEEEEEEEEEEEC-------
T ss_pred EEeCCC--CcEEEeCCccEEEEcc-cCCCcccCCEEEEEEEEEECCCCCCCceeEEEEEEEEEECCCCCCC
Confidence 998874 5899999999999863 57999999999999999999876 689999999999999999995
No 18
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A
Probab=100.00 E-value=8e-35 Score=285.35 Aligned_cols=195 Identities=26% Similarity=0.388 Sum_probs=177.0
Q ss_pred EEEEeCCCCCCcEEEeeeceeeEEeeCCCCcceEEEEEEecC------CCcEEEcccceeeeeeEEEEEecCCCCCccCC
Q psy1887 313 ITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLENN------NGTFEIWPSVVERKAQFTIRVRNNKNLDYERT 386 (653)
Q Consensus 313 ~~~v~En~~~gt~v~~v~~~~~~a~D~D~g~n~~~~~~~~~~------~~~F~I~~~tg~~~~~~~i~l~~~~~LD~E~~ 386 (653)
.++|+||++ |+.++. +.+.|.|.+.|+.++|++.+. .+.|.|++.+|. |++.++||||+.
T Consensus 6 ~~~V~En~~-g~~~~~-----v~~~~~D~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~--------i~~~~~LDrE~~ 71 (215)
T 2qvi_A 6 PINLPENSR-GPFPQE-----LVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQ--------LSVTKPLDRELI 71 (215)
T ss_dssp CEEEESSCC-CCSSEE-----EEECCCGGGGTSCEEEEEESTTSSSTTCSSEEECTTTCE--------EEECSCCCTTTC
T ss_pred cEEEcCCCC-CCCCEE-----EEEEeCCCCCCceEEEEEECCCCCCCCCCcEEEeCCccE--------EEECcccCcccC
Confidence 478999999 877766 378888988999999988543 478999999997 778899999999
Q ss_pred CeEEEEEEEEECCCCCCCCCceEEEEEEEEEeecCCCCCeecccceEEEeeCCCCCCcEEEEEEEeeCCC--CCCceEEE
Q psy1887 387 RTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDT--NLGGEILY 464 (653)
Q Consensus 387 ~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~gt~v~~v~a~D~D~--g~n~~i~y 464 (653)
+.|.|+|+|+|.+ .+++++.+.|+|+|.|+|||+|.|.+..|.++|+|++++|+.|+++.|+|+|. |.|++++|
T Consensus 72 ~~y~l~v~a~D~g----~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~~~g~n~~i~Y 147 (215)
T 2qvi_A 72 ARFHLRAHAVDIN----GNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRY 147 (215)
T ss_dssp SEEEEEEEEEETT----TCCCEEEEEEEEEEECCCCCCCBCSSSEEEEEECSSCCTTCEEEECCCBCSSCTTSTTTCCCC
T ss_pred CeEEEEEEEEECC----CCceeeeEEEEEEEeECCCCCCcccCceeEEEEeCCCCCCCEEEEEEEEeCCCCCCCCcEEEE
Confidence 9999999999988 56789999999999999999999999999999999999999999999999998 78999999
Q ss_pred EEEcCC----CCcceEEeCCCCeEEEEcCccCCccCccEEEEEEEEEECCCC---CceEEEEEEEEEEe
Q psy1887 465 TAILGY----KNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGL---GLRTVVPLQLTILD 526 (653)
Q Consensus 465 ~i~~~~----~~~~F~Id~~tG~i~~~~~~~lD~E~~~~~~l~V~a~D~g~~---~~~~~~~v~I~V~D 526 (653)
+|..++ ..+.|.|++.+|.|++.. ++||||....|.|.|+|+|+|++ +++++++|+|+|+|
T Consensus 148 ~i~~~~~~~~~~~~F~Id~~tG~i~~~~-~~LD~E~~~~y~l~V~a~D~g~~p~~~ls~t~~v~I~V~D 215 (215)
T 2qvi_A 148 RILSQAPSTPSPNMFTINNETGDIITVA-AGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215 (215)
T ss_dssp EEEECSSCCSSTTCEEECTTTCEEEECS-CCCCTTTCSEEEEEEECCTTTTCTTTSCCCEEEEEEEECC
T ss_pred EEecCCCCCCcCCeEEEcCCCcEEEEec-CCCCcccCCeEEEEEEEEECCCCCCCCcceEEEEEEEEEC
Confidence 999876 467899999999999842 68999999999999999999887 78999999999987
No 19
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}
Probab=100.00 E-value=2.4e-33 Score=272.45 Aligned_cols=193 Identities=21% Similarity=0.322 Sum_probs=172.5
Q ss_pred eEEEEeCCCCCC--cEEEeeeceeeEEeeCCCCcceEEEEEEecCCCcEEEcccceeeeeeEEEEEecCCCCCccCCCeE
Q psy1887 312 YITHLDENSPQG--TALIFAESFHTQVTDDNMGKNGIFSLTLENNNGTFEIWPSVVERKAQFTIRVRNNKNLDYERTRTL 389 (653)
Q Consensus 312 ~~~~v~En~~~g--t~v~~v~~~~~~a~D~D~g~n~~~~~~~~~~~~~F~I~~~tg~~~~~~~i~l~~~~~LD~E~~~~~ 389 (653)
..++|+||.+.| ..|+++ . +|+|.|.+ .|++..++..++|.|++.+|. |++.++||||+.+.|
T Consensus 5 ~~~~V~En~~~~~~~~v~~v-----~-~D~D~g~~-~Y~i~~~~~~~~F~Id~~tG~--------i~~~~~LDrE~~~~y 69 (203)
T 3ppe_A 5 NRMHIREEIDSPLPHHVGKL-----T-SSVGNKNA-MYIIEGESANTIFKVQGYDGD--------IYAFERLDREKKAEY 69 (203)
T ss_dssp SEEEEETTCCSSSCEEEEEC-----C-BCCCCTTE-EEEEEETTBTTTEEEETTTTE--------EEESSCCCTTTCCEE
T ss_pred ccEEEEccCCCCCCEEEEEE-----E-ecCCCCCc-EEEEecCCCCCeEEEECCcCE--------EEECccccccccceE
Confidence 458999999988 888873 5 99999988 666664555679999999997 778899999999999
Q ss_pred EEEEEEEECCCCCCCCCceEEEEEEEEEeecCCCCCeecccceEEEeeCCCCCCcEEEEEEEeeCC---CCCCceEEEEE
Q psy1887 390 SFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVD---TNLGGEILYTA 466 (653)
Q Consensus 390 ~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~gt~v~~v~a~D~D---~g~n~~i~y~i 466 (653)
.|+|.|+|.+. .+++++.+.|+|+|.|+|||+|.|.+..|.++|+|++++|+.|++++|+|+| .|.|++++|+|
T Consensus 70 ~l~v~a~D~g~---~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~~g~n~~i~Y~i 146 (203)
T 3ppe_A 70 ELTAHIIDRRN---NRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQI 146 (203)
T ss_dssp EEEEEEEETTT---TEECSCCEEEEEEEECCCCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCTTSSSTTCEEEEE
T ss_pred EEEEEEEECCC---CCcccceEEEEEEEcCCCCCCCCccCCccEEEEeccCCCCcEEEEEEEEcCCCcCCCCceEEEEEE
Confidence 99999999881 2257889999999999999999999999999999999999999999999999 58899999999
Q ss_pred EcCCCCcceEEeCCCCeEEEEcCccCCccCccEEEEEEEEEEC-CCCCceEEEEEEEEEEe
Q psy1887 467 ILGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDM-QGLGLRTVVPLQLTILD 526 (653)
Q Consensus 467 ~~~~~~~~F~Id~~tG~i~~~~~~~lD~E~~~~~~l~V~a~D~-g~~~~~~~~~v~I~V~D 526 (653)
..++ ..|.|+ .+|.|+++. ++||||....|.|.|+|+|+ |.|+++++++|+|+|+|
T Consensus 147 ~~~~--~~F~I~-~tG~i~~~~-~~LD~E~~~~y~l~V~A~D~~G~p~~s~t~~v~I~V~D 203 (203)
T 3ppe_A 147 IKGN--EYFTVD-DSGVIFTAR-ADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203 (203)
T ss_dssp EEST--TTEEEC-TTSEEEESC-SCCCTTTCSEEEEEEEEEETTCCCCSSSEEEEEEEEEC
T ss_pred eCCC--CcEEEe-CCeEEEECC-cCCCcccCCEEEEEEEEEeCCCCCCCeEEEEEEEEEEC
Confidence 8874 489999 999999863 68999999999999999998 67889999999999987
No 20
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Probab=100.00 E-value=1.8e-33 Score=275.87 Aligned_cols=193 Identities=24% Similarity=0.341 Sum_probs=172.3
Q ss_pred EEEEeCCCC--CCcEEEeeeceeeEEeeCCCCcceEEEEEEec------CCCcEEEcccceeeeeeEEEEEecCCCCCcc
Q psy1887 313 ITHLDENSP--QGTALIFAESFHTQVTDDNMGKNGIFSLTLEN------NNGTFEIWPSVVERKAQFTIRVRNNKNLDYE 384 (653)
Q Consensus 313 ~~~v~En~~--~gt~v~~v~~~~~~a~D~D~g~n~~~~~~~~~------~~~~F~I~~~tg~~~~~~~i~l~~~~~LD~E 384 (653)
.++|+||.+ .|+.|+++ .| |.|. |+.++|++.+ ..++|.|++.+|. |++.++||||
T Consensus 6 ~~~V~En~~~~~~~~v~~v-----~a-D~d~--n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~--------i~~~~~LDrE 69 (213)
T 3qrb_A 6 AISCPENEKGEFPKNLVQI-----KS-NRDK--ETKVFYSITGQGADKPPVGVFIIERETGW--------LKVTQPLDRE 69 (213)
T ss_dssp EEEEETTCCSSSSEEEEEC-----CC-GGGG--TSCEEEEEESBTTTBSSTTSEEECTTTCE--------EEECSCCCTT
T ss_pred CEEEeCCCCCCCCcEEEEE-----EE-CCCC--CceEEEEEEcCCCCCCCCCeEEEECCCCE--------EEECCccCcc
Confidence 689999998 67778874 67 6664 6677777733 2358999999997 7888999999
Q ss_pred CCCeEEEEEEEEECCCCCCCCCceEEEEEEEEEeecCCCCCeecccceEEEeeCCCCCCcEEEEEEEeeCCCC---CCce
Q psy1887 385 RTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTN---LGGE 461 (653)
Q Consensus 385 ~~~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~gt~v~~v~a~D~D~g---~n~~ 461 (653)
+.+.|.|+|+|+|.+ .+++++.+.|+|+|.|+|||+|.|.+..|.++|+|++++|+.|++++|+|+|.| .|+.
T Consensus 70 ~~~~y~l~v~a~D~~----~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~~~~~~n~~ 145 (213)
T 3qrb_A 70 AIAKYILYSHAVSSN----GEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAA 145 (213)
T ss_dssp TCSEEEEEEEEEETT----SCBCSCCEEEEEEEECCSCCCCEESCSEEEEEEETTCCTTCEEEECCEECCSCTTTSSTTC
T ss_pred cCceEEEEEEEEeCC----CCcccceEEEEEEEEEccCCCCccCCCceEEEEECCCCCCcEEEEEEEEeCCCCCCCcCcE
Confidence 999999999999988 567888999999999999999999999999999999999999999999999998 8999
Q ss_pred EEEEEEcCC----CCcceEEeCCCCeEEEEcCccCCccCccEEEEEEEEEECCCCCceEEEEEEEEEEe
Q psy1887 462 ILYTAILGY----KNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILD 526 (653)
Q Consensus 462 i~y~i~~~~----~~~~F~Id~~tG~i~~~~~~~lD~E~~~~~~l~V~a~D~g~~~~~~~~~v~I~V~D 526 (653)
++|+|..++ ....|.|++.+|.|++.. ++||||....|.|.|+|+|+|.|+++++++|+|+|+|
T Consensus 146 i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~-~~LD~E~~~~y~l~V~A~D~g~~~~s~t~~v~I~V~D 213 (213)
T 3qrb_A 146 IAYTIVSQDPELPHKNMFTVNRDTGVISVLT-SGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213 (213)
T ss_dssp CEEEEEEEESCCSCSCSEEECTTTCEEEECS-SCCCTTTCCEEEEEEEEETGGGTSCEEEEEEEEEEEC
T ss_pred EEEEEccCCCCCCcCCeEEEECCCcEEEEcc-CCCCCccCceEEEEEEEEeCCCCCceEEEEEEEEEEC
Confidence 999998765 346899999999999853 5799999999999999999999999999999999987
No 21
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A
Probab=100.00 E-value=7.7e-33 Score=270.66 Aligned_cols=207 Identities=23% Similarity=0.324 Sum_probs=178.2
Q ss_pred CCCceeccccCeEEEEeecCCCCceEEEEEEEecCCCCcceEEEecCCCceEEEEeeccCCCCCCeeEEEEEEccccCCC
Q psy1887 101 ANYPVFDISTQMRSLLIPASVKLGTIIYRLRASDSDKDYPLTFDATDFGSYVVKIKSLPCSKNSSFCEANVYLDRVLVPG 180 (653)
Q Consensus 101 d~~P~f~~~~~~~~~~v~E~~~~gt~i~~v~a~D~D~~~~~~y~i~~~~~~~f~i~~~~~~~~~~~~~g~i~l~~~le~~ 180 (653)
|++|.|....|...+.|+|++++|+.|+++.|+|+|.+ .++|+|....
T Consensus 3 n~~P~F~~~~y~~~~~V~E~~~~Gt~v~~v~A~D~D~~-~~~y~i~~~~------------------------------- 50 (210)
T 3mvs_A 3 NRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDND-PLVFGVSGEE------------------------------- 50 (210)
T ss_dssp CCCCEECCGGGTSCEEEETTCCTTCEEEECCEECTTCC-CCEEEEESHH-------------------------------
T ss_pred CCCCccCCCccceEEEEeCCCCCCCEEEEEEEEeCCCC-cEEEEEeCCC-------------------------------
Confidence 68999999987323799999999999999999999964 5667662100
Q ss_pred ceEEEEEEEEECCCCCeeeeEEEEEEecCCCCCCCCCCCCeEEEEeCCCcEEEEeecCC-CCcceEEEEEEEeeCCcccc
Q psy1887 181 QVFQFRIIVKDTRGDTTTVPTSLTATDAALNINAQFPHIPGVIVVPEVLGTYLLWRHLS-GPKNMYLMREIRLSKPYREL 259 (653)
Q Consensus 181 ~~~~~~v~v~d~~g~~~~~~~~i~v~~~~~~~~p~~~~~~~~~~i~e~~G~i~~~~~lD-e~~~~y~l~~~~~~~~ld~~ 259 (653)
....|.|++.+|.|++.+.|| |....|.|.+
T Consensus 51 --------------------------------------~~~~F~Id~~tG~i~~~~~LD~E~~~~y~l~v---------- 82 (210)
T 3mvs_A 51 --------------------------------------ASRFFAVEPDTGVVWLRQPLDRETKSEFTVEF---------- 82 (210)
T ss_dssp --------------------------------------HHHHEEECTTTCEEEESSCCCTTTCCEEEEEE----------
T ss_pred --------------------------------------CCCcEEEeCCCCEEEECCccCCcccceEEEEE----------
Confidence 012378888899999999999 8887777776
Q ss_pred ceecCCCcEEEEEEEEEecccCCCCCCCeEEEEEEEEEEccCCCCCeecCCceEEEEeCCCCCCcEEEeeeceeeEEeeC
Q psy1887 260 HTVASGQPVILMVLAEEERKDLNEPSPQSSTATIALVFDQAINTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDD 339 (653)
Q Consensus 260 ~~~~~~~~~~l~V~A~d~~~d~~~~~~~s~~~~v~i~V~dvNd~~P~f~~~~~~~~v~En~~~gt~v~~v~~~~~~a~D~ 339 (653)
+|+| .+ ...++.++|.|.|+|||+|.|....|.++|+|+.++|+.|+++ .|+|+
T Consensus 83 -------------~a~D----~~----~~~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~gt~v~~v-----~A~D~ 136 (210)
T 3mvs_A 83 -------------SVSD----HQ----GVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIV-----NATDP 136 (210)
T ss_dssp -------------EEEC----SS----CEEEEEEEEEEECCCCCCCEECSCSEEEEEETTCCTTCEEEEC-----CEECC
T ss_pred -------------EEEe----CC----CCEEEEEEEEEEeCCCCCCcCCCceEEEEEECCCCCCCEEEEE-----EEEeC
Confidence 7765 22 2467899999999999999999999999999999999999984 99999
Q ss_pred CCCcceEEEEEEecCCCcEEEcccceeeeeeEEEEEecCCCCCccCCCeEEEEEEEEECCCCCCCCCceEEEEEEEEEee
Q psy1887 340 NMGKNGIFSLTLENNNGTFEIWPSVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYIND 419 (653)
Q Consensus 340 D~g~n~~~~~~~~~~~~~F~I~~~tg~~~~~~~i~l~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~D 419 (653)
|.|.|+.++|++.+..+.|.|++.+|. |++.++||||..+.|.|+|+|+|.+ +.+++++++.|+|+|.|
T Consensus 137 D~g~n~~v~Y~i~~~~~~F~Id~~tG~--------i~~~~~LD~E~~~~y~l~V~a~D~g---~~~~~s~~~~v~I~V~D 205 (210)
T 3mvs_A 137 DLGAGGSVLYSFQPPSPFFAIDSARGI--------VTVIQELDYEVTQAYQLTVNATDQD---KTRPLSTLANLAIIITD 205 (210)
T ss_dssp SSGGGGCEEEEESSCCSSEEECTTTCE--------EEECSCCCTTTCSEEEEEEEEEECC---SSSCCEEEEEEEEEEEC
T ss_pred CCCCCceEEEEEeCCCCCEEEeCCcEE--------EEECCcCCCcccceEEEEEEEEECC---CCCCCEEEEEEEEEEEc
Confidence 999999999999888889999999997 7888999999999999999999987 34679999999999999
Q ss_pred cCCCC
Q psy1887 420 VNDNP 424 (653)
Q Consensus 420 vNDn~ 424 (653)
+|||+
T Consensus 206 vND~~ 210 (210)
T 3mvs_A 206 MQDMD 210 (210)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 99975
No 22
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A
Probab=100.00 E-value=8.8e-33 Score=271.98 Aligned_cols=195 Identities=26% Similarity=0.349 Sum_probs=171.2
Q ss_pred EEEEeCCCCCC--cEEEeeeceeeEEeeCCCCcceEEEEEEe----cCCCcEEEcccceeeeeeEEEEEecCCCCCccCC
Q psy1887 313 ITHLDENSPQG--TALIFAESFHTQVTDDNMGKNGIFSLTLE----NNNGTFEIWPSVVERKAQFTIRVRNNKNLDYERT 386 (653)
Q Consensus 313 ~~~v~En~~~g--t~v~~v~~~~~~a~D~D~g~n~~~~~~~~----~~~~~F~I~~~tg~~~~~~~i~l~~~~~LD~E~~ 386 (653)
.++|+||.+.| +.+++ +.|.|.|. ...|++... +..+.|.|++.+|. |++.++||||+.
T Consensus 7 ~~~V~En~~~g~~~~v~~-----v~a~D~d~--~i~Y~i~~~~~~~~~~~~F~Id~~tG~--------i~~~~~LDrE~~ 71 (218)
T 3k5r_A 7 PILIPENQRQPFPRDVGK-----VVDSDRPE--GSKFRLTGKGVDQDPKGTFRINENTGS--------VSVTRTLDRETI 71 (218)
T ss_dssp CEEEETTCCSSCCEEEEE-----CBCTTCCT--TCEEEEEEBTTTBSSTTSEEECTTTCE--------EEECSCCCTTTC
T ss_pred cEEEecCCCCCCCEEEEE-----EEecCCCc--eEEEEEEcCCCCCCCCCeEEEeCCceE--------EEECCcCCcccC
Confidence 57899999998 77776 47777765 445555432 23479999999997 788899999999
Q ss_pred CeEEEEEEEEECCCCCCCCCceEEEEEEEEEeecCCCCCeecccceEEEeeCCCCCCcEEEEEEEeeCCC--CCCceEEE
Q psy1887 387 RTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDT--NLGGEILY 464 (653)
Q Consensus 387 ~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~gt~v~~v~a~D~D~--g~n~~i~y 464 (653)
+.|.|+|+|+|.+ .+++++++.|+|+|+|+|||+|.|....|.++|+|++++|+.|++++|+|+|. |.|++++|
T Consensus 72 ~~y~l~v~a~D~g----~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~g~n~~i~Y 147 (218)
T 3k5r_A 72 ATYQLYVETTDAS----GKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRY 147 (218)
T ss_dssp SEEEEEEEEECSS----SCEEEEEEEEEEEEECTTCCCCCCCSCSEEEEEETTCCTTCEEEECCCSCSSSSCGGGGCEEE
T ss_pred CEEEEEEEEEECC----CCceeeeEEEEEEEEeCCCCCCcccCCceEEEEECCCCCCCEEEEEEEEeCCCCCCCCcEEEE
Confidence 9999999999987 66789999999999999999999999999999999999999999999999999 78999999
Q ss_pred EEEcCCCC----cceEEeCCCCeEEEEc-CccCCccC--ccEEEEEEEEEECC--CCCceEEEEEEEEEEe
Q psy1887 465 TAILGYKN----SSLELDAHTGDITIAN-GQQFDREE--ASEYKFQVEARDMQ--GLGLRTVVPLQLTILD 526 (653)
Q Consensus 465 ~i~~~~~~----~~F~Id~~tG~i~~~~-~~~lD~E~--~~~~~l~V~a~D~g--~~~~~~~~~v~I~V~D 526 (653)
+|..++.. +.|.|++.+|.|++.. .++||||. ...|.|.|+|+|+| .|+++++++|+|+|+|
T Consensus 148 ~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~~~LD~E~~~~~~y~l~V~a~D~gg~~p~~sst~~v~I~V~D 218 (218)
T 3k5r_A 148 NIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD 218 (218)
T ss_dssp EEEEEESCCSCSCSEEECTTTCEEEECSCGGGCCGGGCSCSEEEEEEEEEECSSTTTTCEEEEEEEEEEEC
T ss_pred EEecCCCCCCcCCEEEEECCccEEEEeccCCCCCccccCCCeEEEEEEEEECCCCCCCeeEEEEEEEEEEC
Confidence 99887543 6799999999998752 24899999 67999999999999 7899999999999987
No 23
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}
Probab=100.00 E-value=2.2e-33 Score=273.84 Aligned_cols=193 Identities=28% Similarity=0.436 Sum_probs=165.4
Q ss_pred EEEEeCCCCCCc--EEEeeeceeeEEeeCCCCcceEEEEEEecC--CCcEEEcccceeeeeeEEEEEecCCCCCccCCCe
Q psy1887 313 ITHLDENSPQGT--ALIFAESFHTQVTDDNMGKNGIFSLTLENN--NGTFEIWPSVVERKAQFTIRVRNNKNLDYERTRT 388 (653)
Q Consensus 313 ~~~v~En~~~gt--~v~~v~~~~~~a~D~D~g~n~~~~~~~~~~--~~~F~I~~~tg~~~~~~~i~l~~~~~LD~E~~~~ 388 (653)
.++|+||.+.|. .++. .|+|+|.| ++.++|++.+. .++|.|++.+|. |++.++||||+.+.
T Consensus 6 ~~~v~En~~~~~~~~v~~------~a~D~D~g-~~~i~Y~l~~~~~~~~F~Id~~tG~--------i~~~~~LDrE~~~~ 70 (207)
T 3lnd_A 6 QFFLLEEYTGSDYQYVGK------LHSDQDRG-DGSLKYILSGDGAGDLFIINENTGD--------IQATKRLDREEKPV 70 (207)
T ss_dssp CEEEESCBCSSSCEEEEE------CCCTTCCS-STTBCCCCCSSSBTTTEEECTTTCE--------EEECSCCCGGGCCE
T ss_pred ccEEEeecCCCCCEEEEE------EEeCCCCC-CceEEEEEECCCCCCeEEEECCceE--------EEECCCcCcccCCE
Confidence 468999998664 7775 48999998 56677777433 358999999997 77889999999999
Q ss_pred EEEEEEEEECCCCCCCCCceEEEEEEEEEeecCCCCCeecccceEEEeeCCCCCCcEEEEEEEeeCCC---CCCceEEEE
Q psy1887 389 LSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDT---NLGGEILYT 465 (653)
Q Consensus 389 ~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~gt~v~~v~a~D~D~---g~n~~i~y~ 465 (653)
|.|+|+|+|.+ ..+++++.+.|+|+|.|+|||+|.|.+..|.++|+|++++|+.|++++|+|+|. |.|++++|+
T Consensus 71 y~l~v~a~D~~---~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v~A~D~D~~~~g~n~~i~Y~ 147 (207)
T 3lnd_A 71 YILRAQAVNRR---TGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYS 147 (207)
T ss_dssp EEC----CBSS---SCCCCSCCCCCEEEEECCSCCCCEESCSEEEEEEESSCCTTCEEEECCEECSSCTTSSSTTCCEEE
T ss_pred EEEEEEEEECC---CCCccccEEEEEEEECccCCCCCccCCCceEEEEeCCCCCCCEEEEEEEEeCCCCCCCCCcEEEEE
Confidence 99999999987 235688889999999999999999999999999999999999999999999998 889999999
Q ss_pred EEcCCCCcceEEeCCCCeEEEEcCccCCccCccEEEEEEEEEECCCC--CceEEEEEEEEEEe
Q psy1887 466 AILGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGL--GLRTVVPLQLTILD 526 (653)
Q Consensus 466 i~~~~~~~~F~Id~~tG~i~~~~~~~lD~E~~~~~~l~V~a~D~g~~--~~~~~~~v~I~V~D 526 (653)
|..+ ...|.|++.+|.|+++. ++||||....|.|+|+|+|+|.+ +++++++|+|+|+|
T Consensus 148 i~~~--~~~F~Id~~tG~i~~~~-~~lD~E~~~~y~l~V~A~D~g~~~~~~s~t~~v~I~V~D 207 (207)
T 3lnd_A 148 ILQG--QPYFSVESETGIIKTAL-LNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207 (207)
T ss_dssp EEES--GGGEEECTTTCEEEECC-SSCCC--CCEEEEEEEEESGGGCTTCBEEEEEEEEEEEC
T ss_pred EcCC--CCCEEEcCCCcEEEECc-ccCCcccCCEEEEEEEEEECCCCCCCcEeEEEEEEEEeC
Confidence 9876 35899999999999863 67999999999999999999876 79999999999987
No 24
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.3e-34 Score=285.27 Aligned_cols=231 Identities=18% Similarity=0.135 Sum_probs=178.3
Q ss_pred eeccccCeEEEEeecCCCCceEEEEEEEecCCCCcceEEEecCCCceEEEEeeccCCCCCCeeEEEEEEccccCCCceEE
Q psy1887 105 VFDISTQMRSLLIPASVKLGTIIYRLRASDSDKDYPLTFDATDFGSYVVKIKSLPCSKNSSFCEANVYLDRVLVPGQVFQ 184 (653)
Q Consensus 105 ~f~~~~~~~~~~v~E~~~~gt~i~~v~a~D~D~~~~~~y~i~~~~~~~f~i~~~~~~~~~~~~~g~i~l~~~le~~~~~~ 184 (653)
.|.+..| .+.|+|++++|+.|++|.|+|+|.+..+.|+|...... .|.
T Consensus 2 ~F~~~~Y--~~~V~E~~~~Gt~v~~v~A~D~D~g~~~~~~i~~~~~~------------------------------~y~ 49 (246)
T 2x2u_A 2 YFSRDAY--WEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYG------------------------------TYR 49 (246)
T ss_dssp EESCSEE--EEEEETTBCTTCEEEECCEECSSTTCCCCCEECSEEEC------------------------------GGG
T ss_pred CccCCce--EEEeeCCCCCCCEEEEEEEEcCCCCCcceEEEeecccc------------------------------cee
Confidence 4777765 99999999999999999999999875556655211000 011
Q ss_pred EEEEEEECCCCCeeeeEEEEEEecCCCCCCCCCCCCeEEEEeCCCcEEEEeecCC-CCcceEEEEEEEeeCCccccceec
Q psy1887 185 FRIIVKDTRGDTTTVPTSLTATDAALNINAQFPHIPGVIVVPEVLGTYLLWRHLS-GPKNMYLMREIRLSKPYRELHTVA 263 (653)
Q Consensus 185 ~~v~v~d~~g~~~~~~~~i~v~~~~~~~~p~~~~~~~~~~i~e~~G~i~~~~~lD-e~~~~y~l~~~~~~~~ld~~~~~~ 263 (653)
+.- .....|.|++.+|.|++.+.|| |....|...- . -.
T Consensus 50 i~~------------------------------~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~~~~---------~--G~ 88 (246)
T 2x2u_A 50 TRL------------------------------HENNWIRIQEDTGLLYLQRSLDHSSWEKLSVRN---------R--GF 88 (246)
T ss_dssp CEE------------------------------EECCSEEECTTTCEEEESSCBCHHHHHHHHHTS---------T--TS
T ss_pred ccC------------------------------CCCCEEEECCCcEEEEECCcCChhHhhhhcccc---------C--CC
Confidence 000 0112489999999999999999 8877770000 0 00
Q ss_pred CCCcEEEEEEEEEecccCCCCC-CCeEEEEEEEEEEccCCCCCe----------ecCCceEEEEeCCCCCCcEEEeeece
Q psy1887 264 SGQPVILMVLAEEERKDLNEPS-PQSSTATIALVFDQAINTPPY----------FDTVQYITHLDENSPQGTALIFAESF 332 (653)
Q Consensus 264 ~~~~~~l~V~A~d~~~d~~~~~-~~s~~~~v~i~V~dvNd~~P~----------f~~~~~~~~v~En~~~gt~v~~v~~~ 332 (653)
....+.|+|.|+| .|.++ .+++++.|+|.|.|+|||+|. |....|.++|+||.++|+.|+++
T Consensus 89 p~~~~~l~V~a~D----~g~~~~~~~~~~~v~I~V~DvNDn~P~~~~~~~~~~~F~~~~y~~~v~En~~~Gt~v~~v--- 161 (246)
T 2x2u_A 89 PLLTVYLKVFLSP----TSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFR--- 161 (246)
T ss_dssp CCCEEEEEEECC-----------CCCTTTEEEEEEEEESSCCCCGGGCCHHHHHSCSSCCCEEEEBTSCCCEEEECS---
T ss_pred cccceEEEEEEEc----CCCCCCcccceEEEEEEEEECCCCCCccccccccccccCCCcEEEEEECCCCCCcEEEEE---
Confidence 0112245568865 33332 578889999999999999999 99999999999999999999985
Q ss_pred eeEEeeCCCCcceEEEEEEecC-CCcEEEcccceeeeeeEEEEEecCCCCCccCCCeEEEEEEEEECCCCCCCCCceEEE
Q psy1887 333 HTQVTDDNMGKNGIFSLTLENN-NGTFEIWPSVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQA 411 (653)
Q Consensus 333 ~~~a~D~D~g~n~~~~~~~~~~-~~~F~I~~~tg~~~~~~~i~l~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~s~~~ 411 (653)
.|+|+|.|.|++++|++... .+.|.|++.+|. |++.++||||....|.|+|+|+|.. +.|++++++
T Consensus 162 --~A~D~D~g~n~~i~Y~i~~~~~~~F~Id~~tG~--------i~~~~~LDrE~~~~y~l~V~A~d~d---g~p~~ss~~ 228 (246)
T 2x2u_A 162 --LLPVQFLCPQISVAYRLLEGEGLPFRSAPDSLE--------VSTRWALDREQREKYELVAVCTVHA---GAREEVVMV 228 (246)
T ss_dssp --CHHHHHHCTTSCEEEEEESCTTSSEECCTTCCE--------EEESSCBCTTTCSEEEEEEEEEEC------CCEEEEE
T ss_pred --EEEcCCCCCCcEEEEEEccCCCCCEEEECCcCE--------EEeCCccCccccceEEEEEEEEecC---CCCcceEEE
Confidence 99999999999999999655 689999999997 8889999999999999999999943 137899999
Q ss_pred EEEEEEeecCCCCCeec
Q psy1887 412 PVLVYINDVNDNPPVFT 428 (653)
Q Consensus 412 ~v~I~V~DvNDn~P~f~ 428 (653)
.|+|+|+|+|||+|.|.
T Consensus 229 ~v~I~V~DvNDn~P~F~ 245 (246)
T 2x2u_A 229 PFPVTVYDEDDSAPEFE 245 (246)
T ss_dssp EEEEEEECSSCCSCCCC
T ss_pred EEEEEEEEeCCCCCccC
Confidence 99999999999999995
No 25
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}
Probab=99.98 E-value=2.5e-31 Score=260.24 Aligned_cols=201 Identities=18% Similarity=0.243 Sum_probs=163.7
Q ss_pred EEEeecCC--CCceEEEEEEEecCCCC-cceEEEecCCCceEEEEeeccCCCCCCeeEEEEEEccccCCCceEEEEEEEE
Q psy1887 114 SLLIPASV--KLGTIIYRLRASDSDKD-YPLTFDATDFGSYVVKIKSLPCSKNSSFCEANVYLDRVLVPGQVFQFRIIVK 190 (653)
Q Consensus 114 ~~~v~E~~--~~gt~i~~v~a~D~D~~-~~~~y~i~~~~~~~f~i~~~~~~~~~~~~~g~i~l~~~le~~~~~~~~v~v~ 190 (653)
.++|+|+. |.|++|+++ |+|+|.+ ..++|+|.+.+
T Consensus 7 ~~~v~En~~~p~~~~v~~v-a~D~D~gn~~i~Y~l~~~~----------------------------------------- 44 (215)
T 2a4e_A 7 QFFVIEEYTGPDPVLVGRL-HSDIDSGDGNIKYILSGEG----------------------------------------- 44 (215)
T ss_dssp EEEEETTCCSSSCEEEEEC-CCTTCCSSSCEEEEEEETT-----------------------------------------
T ss_pred eEEEeccCCCCCCEEEEEE-EECCCCCCCeEEEEEECCC-----------------------------------------
Confidence 88999994 689999998 8999986 56777662110
Q ss_pred ECCCCCeeeeEEEEEEecCCCCCCCCCCCCeEEEEeCCCcEEEEeecCC-CCcceEEEEEEEeeCCccccceecCCCcEE
Q psy1887 191 DTRGDTTTVPTSLTATDAALNINAQFPHIPGVIVVPEVLGTYLLWRHLS-GPKNMYLMREIRLSKPYRELHTVASGQPVI 269 (653)
Q Consensus 191 d~~g~~~~~~~~i~v~~~~~~~~p~~~~~~~~~~i~e~~G~i~~~~~lD-e~~~~y~l~~~~~~~~ld~~~~~~~~~~~~ 269 (653)
....|.|++.+|.|++.+.|| |....|.|.+
T Consensus 45 ----------------------------~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v-------------------- 76 (215)
T 2a4e_A 45 ----------------------------AGTIFVIDDKSGNIHATKTLDREERAQYTLMA-------------------- 76 (215)
T ss_dssp ----------------------------BTTTEEECTTTCEEEECSCCCTTTCSEEEEEE--------------------
T ss_pred ----------------------------CCCeEEEECCceEEEECCccCCccCCEEEEEE--------------------
Confidence 011378888899999999999 8887777766
Q ss_pred EEEEEEEecccCCCCCCCeEEEEEEEEEEccCCCCCeecCCceEEEEeCCCCCCcEEEeeeceeeEEeeCCC---CcceE
Q psy1887 270 LMVLAEEERKDLNEPSPQSSTATIALVFDQAINTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNM---GKNGI 346 (653)
Q Consensus 270 l~V~A~d~~~d~~~~~~~s~~~~v~i~V~dvNd~~P~f~~~~~~~~v~En~~~gt~v~~v~~~~~~a~D~D~---g~n~~ 346 (653)
+|+| .++.+++++++.++|.|.|+|||+|.|....|.++|+|++++|+.|+++ .|+|+|. |.|++
T Consensus 77 ---~a~D----~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~Gt~v~~v-----~A~D~D~~~~G~n~~ 144 (215)
T 2a4e_A 77 ---QAVD----RDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQV-----TASDADDPTYGNSAK 144 (215)
T ss_dssp ---EEEE----TTTCCEEEEEEEEEEEEECCCCCCCEESSSSEEEEEETTCCTTCEEEEC-----CEECSSCTTTCSSSC
T ss_pred ---EEEE----CCCCCcccccEEEEEEEeeCCCCCCCccCCceEEEEECCCCCCCEEEEE-----EEEECCCCCCCCceE
Confidence 8876 3334568889999999999999999999999999999999999999985 9999997 88888
Q ss_pred EEEEEecCCCcEEEcccceeeeeeEEEEEecC-CCCCccCCCeEEEEEEEEECCCCCCCCCceEEEEEEEEEeecCCCCC
Q psy1887 347 FSLTLENNNGTFEIWPSVVERKAQFTIRVRNN-KNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPP 425 (653)
Q Consensus 347 ~~~~~~~~~~~F~I~~~tg~~~~~~~i~l~~~-~~LD~E~~~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvNDn~P 425 (653)
++|++....+.|.|++.+|. |++. ++||||....|.|.|+|+|.|.+ .+++++++.|+|+|.|+|||+|
T Consensus 145 i~Y~i~~~~~~F~Id~~tG~--------I~~~~~~LD~E~~~~y~l~V~A~D~g~~--~~~~s~~~~v~I~V~DvNDn~P 214 (215)
T 2a4e_A 145 LVYSILEGQPYFSVEAQTGI--------IRTALPNMDREAKEEYHVVIQAKDMGGH--MGGLSGTTKVTITLTDDYKDDD 214 (215)
T ss_dssp CEEEEEESTTTEEECTTTCE--------EEECSSCCCSSSCSEEEEEEEEETTTTC--TTCCEEEEEEEEEEEC------
T ss_pred EEEEEeCCCCcEEEeCCccE--------EEEcccCCCcccCCEEEEEEEEEECCCC--CCCceeEEEEEEEEEECCCCCC
Confidence 89988766789999999997 7777 99999999999999999998821 1268999999999999999999
Q ss_pred e
Q psy1887 426 V 426 (653)
Q Consensus 426 ~ 426 (653)
+
T Consensus 215 ~ 215 (215)
T 2a4e_A 215 K 215 (215)
T ss_dssp -
T ss_pred C
Confidence 5
No 26
>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*
Probab=99.97 E-value=5.9e-30 Score=254.33 Aligned_cols=202 Identities=20% Similarity=0.281 Sum_probs=166.7
Q ss_pred ceEEEEeCCCCCCcEEEeeeceeeEEeeCCCCcceEEEEEEec-CCCcEEEcccceeeeeeEEEEEe-cCCCCCccCCCe
Q psy1887 311 QYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLEN-NNGTFEIWPSVVERKAQFTIRVR-NNKNLDYERTRT 388 (653)
Q Consensus 311 ~~~~~v~En~~~gt~v~~v~~~~~~a~D~D~g~n~~~~~~~~~-~~~~F~I~~~tg~~~~~~~i~l~-~~~~LD~E~~~~ 388 (653)
.+.++|+|+++.|+.|..+ +.+.|.|.+.++.++|++.+ ...+|.|++.+|. +.+. ..+.||||....
T Consensus 21 ~~~vsV~E~sp~GTvv~~~----~~~~~~d~~~n~~i~ysl~~~~~~~f~id~~tg~------~~l~~t~~~LDrE~~~~ 90 (242)
T 4apx_B 21 ATIVAIDEESRNGTILVDN----MLIKGTAGGPDPTIELSLKDNVDYWVLLDPVKQM------LFLNSTGRVLDRDPPMN 90 (242)
T ss_dssp SEEEEEETTCCTTCEEESC----CCBSSCBSSSSCSEEEEEESCGGGCEEEETTTTE------EEECCTTSCCCCSTTTC
T ss_pred eEEEEeeCCCCCCCEEEEE----EEecCCCCCCCCEEEEEEecCCCceEEECCCCCE------EEEEecCCceeccCCCc
Confidence 4678999999999998764 45566677888889998854 4568999999996 3342 357899999877
Q ss_pred EEEEEEEEECCCCCCCCCceEEEEEEEEEeecCCCCCeecccceEEEeeCCCCCCcEEEE-----EEEeeCCCCCCceEE
Q psy1887 389 LSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQ-----VKATDVDTNLGGEIL 463 (653)
Q Consensus 389 ~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~gt~v~~-----v~a~D~D~g~n~~i~ 463 (653)
|.+.+.+.+.+. ...+..+.+.|+|.|+|+|||+|.|.+..|.++|+|++++|+.|++ +.|+|+|.|.|++++
T Consensus 91 ~~~~~~~v~~~~--~~~~~~~~~~V~I~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~~~~~~v~A~D~D~g~N~~v~ 168 (242)
T 4apx_B 91 IHSIVVQVQCVN--KKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIE 168 (242)
T ss_dssp CCEEEEEEEEEE--TTTCCEEEEEEEEEEECCCCCCCEESSSCEEEEEETTCCTTCEEECTTTTTTSEECCSSGGGGCEE
T ss_pred eEEEEEEEEeEC--CCCCeEEEEEEEEEEEeCCCCCCcccceeeeeEeeeccCCCCEEEEeeecccccccCCCCcCCceE
Confidence 765554444331 1234667788999999999999999999999999999999999986 789999999999999
Q ss_pred EEEEcCCCC----cceEEeC-CCCeEEEEcCccCCccCccEEEEEEEEEECCCCC---ceEEEEEEEEEEe
Q psy1887 464 YTAILGYKN----SSLELDA-HTGDITIANGQQFDREEASEYKFQVEARDMQGLG---LRTVVPLQLTILD 526 (653)
Q Consensus 464 y~i~~~~~~----~~F~Id~-~tG~i~~~~~~~lD~E~~~~~~l~V~a~D~g~~~---~~~~~~v~I~V~D 526 (653)
|+|..++.. +.|.|+. .+|.|+++ ++||||....|.|.|+|+|+|.|+ +++++.|+|.|+-
T Consensus 169 Ysi~~~~~~~~~~~~F~Id~~~tG~i~~~--~~LD~E~~~~y~l~V~A~D~G~~~~~~~~~~~~vtVnVe~ 237 (242)
T 4apx_B 169 YVIQYNPEDPTSNDTFEIPLMLTGNVVLR--KRLNYEDKTRYYVIIQANDRAQNLNERRTTTTTLTVDLEH 237 (242)
T ss_dssp EEEECCTTSTTHHHHEECSSTTTCCEEEC--SCCCTTTCCEEEEEEEEEECCSSGGGCCEEEEEEEEEEEC
T ss_pred EEEecCCCCcccccceEEcCCCceEEEEC--CcCChhhCCEEEEEEEEEECCcCchhcccCCceEEEEEee
Confidence 999887543 4699995 59999998 889999999999999999999874 7788899998874
No 27
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A
Probab=99.96 E-value=5.4e-29 Score=243.91 Aligned_cols=200 Identities=20% Similarity=0.302 Sum_probs=164.1
Q ss_pred EEEeeCCCCCCcEEEEEEEeeCCCCCCceEEEEEEcCC----CCcceEEeCCCCeEEEEcCccCCccCccEEEEEEEEEE
Q psy1887 433 TAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGY----KNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARD 508 (653)
Q Consensus 433 ~~~V~E~~~~gt~v~~v~a~D~D~g~n~~i~y~i~~~~----~~~~F~Id~~tG~i~~~~~~~lD~E~~~~~~l~V~a~D 508 (653)
.++|+||++ |+.++++.|.|.|.+.|++++|+|.++. ..+.|.|++.+|.|++. ++||||....|.|+|+|+|
T Consensus 6 ~~~V~En~~-g~~~~~v~~~~~D~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~--~~LDrE~~~~y~l~v~a~D 82 (215)
T 2qvi_A 6 PINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVT--KPLDRELIARFHLRAHAVD 82 (215)
T ss_dssp CEEEESSCC-CCSSEEEEECCCGGGGTSCEEEEEESTTSSSTTCSSEEECTTTCEEEEC--SCCCTTTCSEEEEEEEEEE
T ss_pred cEEEcCCCC-CCCCEEEEEEeCCCCCCceEEEEEECCCCCCCCCCcEEEeCCccEEEEC--cccCcccCCeEEEEEEEEE
Confidence 568999998 9999999999999989999999998753 35789999999999998 8999999999999999999
Q ss_pred CCCCCceEEEEEEEEEEecCCCCCeEeecCcEEEEecCCCCCeEEEEEEEEeCCCC-CCCCeEEEEEEeCC----CCCcE
Q psy1887 509 MQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDAE-APNNIVRYEIISGN----YDNKF 583 (653)
Q Consensus 509 ~g~~~~~~~~~v~I~V~DvNDn~P~f~~~~y~~~v~e~~~~g~~v~~v~A~D~D~~-~~n~~i~Y~i~~~~----~~~~F 583 (653)
+|.+++++++.|+|+|+|+|||+|+|.+..|.+.|.|++++|+.|++|.|+|+|.+ +.|+.++|+|.+++ ..++|
T Consensus 83 ~g~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v~A~D~D~~~g~n~~i~Y~i~~~~~~~~~~~~F 162 (215)
T 2qvi_A 83 INGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMF 162 (215)
T ss_dssp TTTCCCEEEEEEEEEEECCCCCCCBCSSSEEEEEECSSCCTTCEEEECCCBCSSCTTSTTTCCCCEEEECSSCCSSTTCE
T ss_pred CCCCceeeeEEEEEEEeECCCCCCcccCceeEEEEeCCCCCCCEEEEEEEEeCCCCCCCCcEEEEEEecCCCCCCcCCeE
Confidence 99999999999999999999999999999999999999999999999999999983 37999999999876 46899
Q ss_pred EEEcCCCccceeeEEEEEEeCCCCC-ccceEEEecCCccchhccchhheeeeecCcEEEEEe
Q psy1887 584 SLHPETGVPHKWSTTQVRIYPPDSA-VRNIKFLVPHSQAQLERKQLEDILSEMSGGRVSVVN 644 (653)
Q Consensus 584 ~Id~~tG~p~~~~~~~v~i~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~v~~~d 644 (653)
.|++.||...+. -..++.. ...|.+.|....... +....+.+.+...|.|.|
T Consensus 163 ~Id~~tG~i~~~------~~~LD~E~~~~y~l~V~a~D~g~---~p~~~ls~t~~v~I~V~D 215 (215)
T 2qvi_A 163 TINNETGDIITV------AAGLDREKVQQYTLIIQATDMEG---NPTYGLSNTATAVITVTD 215 (215)
T ss_dssp EECTTTCEEEEC------SCCCCTTTCSEEEEEEECCTTTT---CTTTSCCCEEEEEEEECC
T ss_pred EEcCCCcEEEEe------cCCCCcccCCeEEEEEEEEECCC---CCCCCcceEEEEEEEEEC
Confidence 999999964221 0234443 466777776552111 101134455556666654
No 28
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}
Probab=99.96 E-value=1.1e-27 Score=232.57 Aligned_cols=191 Identities=14% Similarity=0.158 Sum_probs=162.7
Q ss_pred EEEeecCCCCc--eEEEEEEEecCCCCcceEEEecCCCceEEEEeeccCCCCCCeeEEEEEEccccCCCceEEEEEEEEE
Q psy1887 114 SLLIPASVKLG--TIIYRLRASDSDKDYPLTFDATDFGSYVVKIKSLPCSKNSSFCEANVYLDRVLVPGQVFQFRIIVKD 191 (653)
Q Consensus 114 ~~~v~E~~~~g--t~i~~v~a~D~D~~~~~~y~i~~~~~~~f~i~~~~~~~~~~~~~g~i~l~~~le~~~~~~~~v~v~d 191 (653)
.++|+||.+.| ..|+++. +|+|.+.. +|+|.+.+
T Consensus 6 ~~~V~En~~~~~~~~v~~v~-~D~D~g~~-~Y~i~~~~------------------------------------------ 41 (203)
T 3ppe_A 6 RMHIREEIDSPLPHHVGKLT-SSVGNKNA-MYIIEGES------------------------------------------ 41 (203)
T ss_dssp EEEEETTCCSSSCEEEEECC-BCCCCTTE-EEEEEETT------------------------------------------
T ss_pred cEEEEccCCCCCCEEEEEEE-ecCCCCCc-EEEEecCC------------------------------------------
Confidence 79999999998 8889998 99998755 66662100
Q ss_pred CCCCCeeeeEEEEEEecCCCCCCCCCCCCeEEEEeCCCcEEEEeecCC-CCcceEEEEEEEeeCCccccceecCCCcEEE
Q psy1887 192 TRGDTTTVPTSLTATDAALNINAQFPHIPGVIVVPEVLGTYLLWRHLS-GPKNMYLMREIRLSKPYRELHTVASGQPVIL 270 (653)
Q Consensus 192 ~~g~~~~~~~~i~v~~~~~~~~p~~~~~~~~~~i~e~~G~i~~~~~lD-e~~~~y~l~~~~~~~~ld~~~~~~~~~~~~l 270 (653)
....|.|++.+|.|++.+.|| |....|.|.+
T Consensus 42 ---------------------------~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v--------------------- 73 (203)
T 3ppe_A 42 ---------------------------ANTIFKVQGYDGDIYAFERLDREKKAEYELTA--------------------- 73 (203)
T ss_dssp ---------------------------BTTTEEEETTTTEEEESSCCCTTTCCEEEEEE---------------------
T ss_pred ---------------------------CCCeEEEECCcCEEEECccccccccceEEEEE---------------------
Confidence 012378888999999999999 9887777766
Q ss_pred EEEEEEecccCCCCCCCeEEEEEEEEEEccCCCCCeecCCceEEEEeCCCCCCcEEEeeeceeeEEeeCC---CCcceEE
Q psy1887 271 MVLAEEERKDLNEPSPQSSTATIALVFDQAINTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDN---MGKNGIF 347 (653)
Q Consensus 271 ~V~A~d~~~d~~~~~~~s~~~~v~i~V~dvNd~~P~f~~~~~~~~v~En~~~gt~v~~v~~~~~~a~D~D---~g~n~~~ 347 (653)
+|+| .|+++++++++.++|.|.|+|||+|.|....|.++|+|++++|+.|+++ .|+|+| .|.|+++
T Consensus 74 --~a~D----~g~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v-----~A~D~D~~~~g~n~~i 142 (203)
T 3ppe_A 74 --HIID----RRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKV-----TAEDADDPTVAGHATV 142 (203)
T ss_dssp --EEEE----TTTTEECSCCEEEEEEEECCCCCCCEESCSEEEEEEETTCCTTCEEEEC-----CEECCSCTTSSSTTCE
T ss_pred --EEEE----CCCCCcccceEEEEEEEcCCCCCCCCccCCccEEEEeccCCCCcEEEEE-----EEEcCCCcCCCCceEE
Confidence 8876 3333367888999999999999999999999999999999999999985 999999 5889999
Q ss_pred EEEEecCCCcEEEcccceeeeeeEEEEEecC-CCCCccCCCeEEEEEEEEECCCCCCCCCceEEEEEEEEEee
Q psy1887 348 SLTLENNNGTFEIWPSVVERKAQFTIRVRNN-KNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYIND 419 (653)
Q Consensus 348 ~~~~~~~~~~F~I~~~tg~~~~~~~i~l~~~-~~LD~E~~~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~D 419 (653)
+|++....+.|.|+ .+|. |++. ++||||..+.|.|.|+|+|.+ +.|++++++.|+|+|+|
T Consensus 143 ~Y~i~~~~~~F~I~-~tG~--------i~~~~~~LD~E~~~~y~l~V~A~D~~---G~p~~s~t~~v~I~V~D 203 (203)
T 3ppe_A 143 TYQIIKGNEYFTVD-DSGV--------IFTARADLDRESQSAYEIIVKAKDAL---GLTGESSTATVIIRLTD 203 (203)
T ss_dssp EEEEEESTTTEEEC-TTSE--------EEESCSCCCTTTCSEEEEEEEEEETT---CCCCSSSEEEEEEEEEC
T ss_pred EEEEeCCCCcEEEe-CCeE--------EEECCcCCCcccCCEEEEEEEEEeCC---CCCCCeEEEEEEEEEEC
Confidence 99997777899999 9997 7777 999999999999999999984 25679999999999987
No 29
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Probab=99.96 E-value=1.1e-27 Score=234.58 Aligned_cols=195 Identities=17% Similarity=0.255 Sum_probs=164.4
Q ss_pred EEEeecCCC--CceEEEEEEEecCCCCcceEEEecCCCceEEEEeeccCCCCCCeeEEEEEEccccCCCceEEEEEEEEE
Q psy1887 114 SLLIPASVK--LGTIIYRLRASDSDKDYPLTFDATDFGSYVVKIKSLPCSKNSSFCEANVYLDRVLVPGQVFQFRIIVKD 191 (653)
Q Consensus 114 ~~~v~E~~~--~gt~i~~v~a~D~D~~~~~~y~i~~~~~~~f~i~~~~~~~~~~~~~g~i~l~~~le~~~~~~~~v~v~d 191 (653)
.++|+||.+ .|+.|+++.| |+|.+..++|+|...+.
T Consensus 6 ~~~V~En~~~~~~~~v~~v~a-D~d~n~~v~Ysi~~~~~----------------------------------------- 43 (213)
T 3qrb_A 6 AISCPENEKGEFPKNLVQIKS-NRDKETKVFYSITGQGA----------------------------------------- 43 (213)
T ss_dssp EEEEETTCCSSSSEEEEECCC-GGGGTSCEEEEEESBTT-----------------------------------------
T ss_pred CEEEeCCCCCCCCcEEEEEEE-CCCCCceEEEEEEcCCC-----------------------------------------
Confidence 789999999 7899999999 99988889998832110
Q ss_pred CCCCCeeeeEEEEEEecCCCCCCCCCCCCeEEEEeCCCcEEEEeecCC-CCcceEEEEEEEeeCCccccceecCCCcEEE
Q psy1887 192 TRGDTTTVPTSLTATDAALNINAQFPHIPGVIVVPEVLGTYLLWRHLS-GPKNMYLMREIRLSKPYRELHTVASGQPVIL 270 (653)
Q Consensus 192 ~~g~~~~~~~~i~v~~~~~~~~p~~~~~~~~~~i~e~~G~i~~~~~lD-e~~~~y~l~~~~~~~~ld~~~~~~~~~~~~l 270 (653)
++ .....|.|++.+|.|++.+.|| |....|.|.+
T Consensus 44 -~~-----------------------~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v--------------------- 78 (213)
T 3qrb_A 44 -DK-----------------------PPVGVFIIERETGWLKVTQPLDREAIAKYILYS--------------------- 78 (213)
T ss_dssp -TB-----------------------SSTTSEEECTTTCEEEECSCCCTTTCSEEEEEE---------------------
T ss_pred -CC-----------------------CCCCeEEEECCCCEEEECCccCcccCceEEEEE---------------------
Confidence 00 0113488999999999999999 9888777766
Q ss_pred EEEEEEecccCCCCCCCeEEEEEEEEEEccCCCCCeecCCceEEEEeCCCCCCcEEEeeeceeeEEeeCCCC---cceEE
Q psy1887 271 MVLAEEERKDLNEPSPQSSTATIALVFDQAINTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMG---KNGIF 347 (653)
Q Consensus 271 ~V~A~d~~~d~~~~~~~s~~~~v~i~V~dvNd~~P~f~~~~~~~~v~En~~~gt~v~~v~~~~~~a~D~D~g---~n~~~ 347 (653)
+|+| .+ .+++++++.++|.|.|+|||+|.|....|.++|+|++++|+.|+++ .|+|+|.| .|+.+
T Consensus 79 --~a~D----~~-~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~En~~~gt~v~~v-----~A~D~D~~~~~~n~~i 146 (213)
T 3qrb_A 79 --HAVS----SN-GEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKV-----SATDADDDVNTYNAAI 146 (213)
T ss_dssp --EEEE----TT-SCBCSCCEEEEEEEECCSCCCCEESCSEEEEEEETTCCTTCEEEEC-----CEECCSCTTTSSTTCC
T ss_pred --EEEe----CC-CCcccceEEEEEEEEEccCCCCccCCCceEEEEECCCCCCcEEEEE-----EEEeCCCCCCCcCcEE
Confidence 8876 23 4567888999999999999999999999999999999999999985 99999999 78888
Q ss_pred EEEEec------CCCcEEEcccceeeeeeEEEEEecC-CCCCccCCCeEEEEEEEEECCCCCCCCCceEEEEEEEEEee
Q psy1887 348 SLTLEN------NNGTFEIWPSVVERKAQFTIRVRNN-KNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYIND 419 (653)
Q Consensus 348 ~~~~~~------~~~~F~I~~~tg~~~~~~~i~l~~~-~~LD~E~~~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~D 419 (653)
+|++.. ..+.|.|++.+|. |++. ++||||..+.|.|.|+|+|.| .+++++++.|+|+|+|
T Consensus 147 ~Y~i~~~~~~~~~~~~F~Id~~tG~--------i~~~~~~LD~E~~~~y~l~V~A~D~g----~~~~s~t~~v~I~V~D 213 (213)
T 3qrb_A 147 AYTIVSQDPELPHKNMFTVNRDTGV--------ISVLTSGLDRESYPTYTLVVQAADLQ----GEGLSTTAKAVITVKD 213 (213)
T ss_dssp EEEEEEEESCCSCSCSEEECTTTCE--------EEECSSCCCTTTCCEEEEEEEEETGG----GTSCEEEEEEEEEEEC
T ss_pred EEEEccCCCCCCcCCeEEEECCCcE--------EEEccCCCCCccCceEEEEEEEEeCC----CCCceEEEEEEEEEEC
Confidence 888732 3468999999997 6655 899999999999999999988 5689999999999987
No 30
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A
Probab=99.95 E-value=2.2e-27 Score=233.37 Aligned_cols=196 Identities=19% Similarity=0.266 Sum_probs=162.8
Q ss_pred EEEeecCCCCc--eEEEEEEEecCCCCcceEEEecCCCceEEEEeeccCCCCCCeeEEEEEEccccCCCceEEEEEEEEE
Q psy1887 114 SLLIPASVKLG--TIIYRLRASDSDKDYPLTFDATDFGSYVVKIKSLPCSKNSSFCEANVYLDRVLVPGQVFQFRIIVKD 191 (653)
Q Consensus 114 ~~~v~E~~~~g--t~i~~v~a~D~D~~~~~~y~i~~~~~~~f~i~~~~~~~~~~~~~g~i~l~~~le~~~~~~~~v~v~d 191 (653)
.+.|+||.++| +.|+++.|+|+|. .++|+|...+.
T Consensus 7 ~~~V~En~~~g~~~~v~~v~a~D~d~--~i~Y~i~~~~~----------------------------------------- 43 (218)
T 3k5r_A 7 PILIPENQRQPFPRDVGKVVDSDRPE--GSKFRLTGKGV----------------------------------------- 43 (218)
T ss_dssp CEEEETTCCSSCCEEEEECBCTTCCT--TCEEEEEEBTT-----------------------------------------
T ss_pred cEEEecCCCCCCCEEEEEEEecCCCc--eEEEEEEcCCC-----------------------------------------
Confidence 78999999999 8899999998887 78888821100
Q ss_pred CCCCCeeeeEEEEEEecCCCCCCCCCCCCeEEEEeCCCcEEEEeecCC-CCcceEEEEEEEeeCCccccceecCCCcEEE
Q psy1887 192 TRGDTTTVPTSLTATDAALNINAQFPHIPGVIVVPEVLGTYLLWRHLS-GPKNMYLMREIRLSKPYRELHTVASGQPVIL 270 (653)
Q Consensus 192 ~~g~~~~~~~~i~v~~~~~~~~p~~~~~~~~~~i~e~~G~i~~~~~lD-e~~~~y~l~~~~~~~~ld~~~~~~~~~~~~l 270 (653)
+ ......|.|++.+|.|++.+.|| |....|.|.+
T Consensus 44 -~-----------------------~~~~~~F~Id~~tG~i~~~~~LDrE~~~~y~l~v--------------------- 78 (218)
T 3k5r_A 44 -D-----------------------QDPKGTFRINENTGSVSVTRTLDRETIATYQLYV--------------------- 78 (218)
T ss_dssp -T-----------------------BSSTTSEEECTTTCEEEECSCCCTTTCSEEEEEE---------------------
T ss_pred -C-----------------------CCCCCeEEEeCCceEEEECCcCCcccCCEEEEEE---------------------
Confidence 0 01123588999999999999999 9887777776
Q ss_pred EEEEEEecccCCCCCCCeEEEEEEEEEEccCCCCCeecCCceEEEEeCCCCCCcEEEeeeceeeEEeeCCC--CcceEEE
Q psy1887 271 MVLAEEERKDLNEPSPQSSTATIALVFDQAINTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNM--GKNGIFS 348 (653)
Q Consensus 271 ~V~A~d~~~d~~~~~~~s~~~~v~i~V~dvNd~~P~f~~~~~~~~v~En~~~gt~v~~v~~~~~~a~D~D~--g~n~~~~ 348 (653)
+|+| ++.+++++++.|+|.|.|+|||+|.|....|.++|+|++++|+.|+++ .|+|+|. |.|++++
T Consensus 79 --~a~D-----~g~~~~~~~~~v~I~V~DvNDn~P~F~~~~y~~~v~E~~~~gt~v~~v-----~A~D~D~~~g~n~~i~ 146 (218)
T 3k5r_A 79 --ETTD-----ASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRM-----TAFDADDPATDNALLR 146 (218)
T ss_dssp --EEEC-----SSSCEEEEEEEEEEEEECTTCCCCCCCSCSEEEEEETTCCTTCEEEEC-----CCSCSSSSCGGGGCEE
T ss_pred --EEEE-----CCCCceeeeEEEEEEEEeCCCCCCcccCCceEEEEECCCCCCCEEEEE-----EEEeCCCCCCCCcEEE
Confidence 7865 345678899999999999999999999999999999999999999984 9999999 7899888
Q ss_pred EEEec--C----CCcEEEcccceeeeeeEEEEEecC---CCCCccC--CCeEEEEEEEEECCCCCCCCCceEEEEEEEEE
Q psy1887 349 LTLEN--N----NGTFEIWPSVVERKAQFTIRVRNN---KNLDYER--TRTLSFVIVAKEISSDSSSNLLSSQAPVLVYI 417 (653)
Q Consensus 349 ~~~~~--~----~~~F~I~~~tg~~~~~~~i~l~~~---~~LD~E~--~~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V 417 (653)
|++.. . .+.|.|++.+|. |++. ++||||. ...|.|.|+|+|.| +..|+++++++|+|+|
T Consensus 147 Y~i~~~~~~~~~~~~F~Id~~tG~--------i~~~~~~~~LD~E~~~~~~y~l~V~a~D~g--g~~p~~sst~~v~I~V 216 (218)
T 3k5r_A 147 YNIRQQTPDKPSPNMFYIDPEKGD--------IVTVVSPALLDRETLENPKYELIIEAQDMA--GLDVGLTGTATATIVI 216 (218)
T ss_dssp EEEEEEESCCSCSCSEEECTTTCE--------EEECSCGGGCCGGGCSCSEEEEEEEEEECS--STTTTCEEEEEEEEEE
T ss_pred EEEecCCCCCCcCCEEEEECCccE--------EEEeccCCCCCccccCCCeEEEEEEEEECC--CCCCCeeEEEEEEEEE
Confidence 88843 2 267999999997 5544 7999999 77999999999987 2356899999999999
Q ss_pred ee
Q psy1887 418 ND 419 (653)
Q Consensus 418 ~D 419 (653)
+|
T Consensus 217 ~D 218 (218)
T 3k5r_A 217 DD 218 (218)
T ss_dssp EC
T ss_pred EC
Confidence 87
No 31
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}
Probab=99.95 E-value=8.1e-28 Score=234.46 Aligned_cols=156 Identities=19% Similarity=0.278 Sum_probs=131.8
Q ss_pred EEEEeCCCcEEEEeecCC-CCcceEEEEEEEeeCCccccceecCCCcEEEEEEEEEecccCCCCCCCeEEEEEEEEEEcc
Q psy1887 222 VIVVPEVLGTYLLWRHLS-GPKNMYLMREIRLSKPYRELHTVASGQPVILMVLAEEERKDLNEPSPQSSTATIALVFDQA 300 (653)
Q Consensus 222 ~~~i~e~~G~i~~~~~lD-e~~~~y~l~~~~~~~~ld~~~~~~~~~~~~l~V~A~d~~~d~~~~~~~s~~~~v~i~V~dv 300 (653)
.|.|++.+|.|++.+.|| |....|.|.+ +|+| .++.+++++++.+.|.|.|+
T Consensus 47 ~F~Id~~tG~i~~~~~LDrE~~~~y~l~v-----------------------~a~D----~~~~~~~~~~~~v~I~V~Dv 99 (207)
T 3lnd_A 47 LFIINENTGDIQATKRLDREEKPVYILRA-----------------------QAVN----RRTGRPVEPESEFIIKIHDI 99 (207)
T ss_dssp TEEECTTTCEEEECSCCCGGGCCEEEC---------------------------CB----SSSCCCCSCCCCCEEEEECC
T ss_pred eEEEECCceEEEECCCcCcccCCEEEEEE-----------------------EEEE----CCCCCccccEEEEEEEECcc
Confidence 378888899999999999 8887777766 7755 44446688889999999999
Q ss_pred CCCCCeecCCceEEEEeCCCCCCcEEEeeeceeeEEeeCCC---CcceEEEEEEecCCCcEEEcccceeeeeeEEEEEec
Q psy1887 301 INTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNM---GKNGIFSLTLENNNGTFEIWPSVVERKAQFTIRVRN 377 (653)
Q Consensus 301 Nd~~P~f~~~~~~~~v~En~~~gt~v~~v~~~~~~a~D~D~---g~n~~~~~~~~~~~~~F~I~~~tg~~~~~~~i~l~~ 377 (653)
|||+|.|....|.++|+|+.++|+.|+++ .|+|+|. |.|++++|++....+.|.|++.+|. |++
T Consensus 100 NDn~P~F~~~~y~~~v~E~~~~gt~v~~v-----~A~D~D~~~~g~n~~i~Y~i~~~~~~F~Id~~tG~--------i~~ 166 (207)
T 3lnd_A 100 NDNEPIFTKDVYTATVPEMADVGTFVVQV-----TATDADDPTYGNSAKVVYSILQGQPYFSVESETGI--------IKT 166 (207)
T ss_dssp SCCCCEESCSEEEEEEESSCCTTCEEEEC-----CEECSSCTTSSSTTCCEEEEEESGGGEEECTTTCE--------EEE
T ss_pred CCCCCccCCCceEEEEeCCCCCCCEEEEE-----EEEeCCCCCCCCCcEEEEEEcCCCCCEEEcCCCcE--------EEE
Confidence 99999999999999999999999999984 9999998 8888888988777779999999997 777
Q ss_pred C-CCCCccCCCeEEEEEEEEECCCCCCCCCceEEEEEEEEEee
Q psy1887 378 N-KNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYIND 419 (653)
Q Consensus 378 ~-~~LD~E~~~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~D 419 (653)
. ++||||....|.|+|+|+|.|. ..++++++++|+|+|+|
T Consensus 167 ~~~~lD~E~~~~y~l~V~A~D~g~--~~~~~s~t~~v~I~V~D 207 (207)
T 3lnd_A 167 ALLNMDRENREQYQVVIQAKDMGG--QMGGLSGTTTVNITLTD 207 (207)
T ss_dssp CCSSCCC--CCEEEEEEEEESGGG--CTTCBEEEEEEEEEEEC
T ss_pred CcccCCcccCCEEEEEEEEEECCC--CCCCcEeEEEEEEEEeC
Confidence 7 9999999999999999999871 11279999999999987
No 32
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.94 E-value=5e-27 Score=207.71 Aligned_cols=116 Identities=32% Similarity=0.489 Sum_probs=109.7
Q ss_pred EEEeecCCCCCeecccceEEEeeCCCCCCcEEEEEEEeeCCCCCCceEEEEEEcCCC--CcceEEeCCCCeEEEEcCccC
Q psy1887 415 VYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYK--NSSLELDAHTGDITIANGQQF 492 (653)
Q Consensus 415 I~V~DvNDn~P~f~~~~y~~~V~E~~~~gt~v~~v~a~D~D~g~n~~i~y~i~~~~~--~~~F~Id~~tG~i~~~~~~~l 492 (653)
++|+|+|||+|.|.+..|.++|+|++++|+.|+++.|+|+|.|.|++++|+|..+.. ..+|.|++.+|.|+++ ++|
T Consensus 2 ~~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~F~Id~~tG~I~~~--~~L 79 (119)
T 2yst_A 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVL--HRI 79 (119)
T ss_dssp CCCCCSCCCCCCCSSSEEEEEEETTCCTTCEEEECCCCCSSSSCCSCCCCEECSCCTTHHHHEEECTTTCEEEEC--SCC
T ss_pred CeEecCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCCeEEEEEecCCCccccEEEEeCCceEEEEC--ccC
Confidence 468999999999999999999999999999999999999999999999999987643 3689999999999998 899
Q ss_pred CccCccEEEEEEEEEECCCCCceEEEEEEEEEEecCCCCC
Q psy1887 493 DREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAP 532 (653)
Q Consensus 493 D~E~~~~~~l~V~a~D~g~~~~~~~~~v~I~V~DvNDn~P 532 (653)
|||....|.|+|+|+|+|.|++++++.|+|+|+|+|||+|
T Consensus 80 D~E~~~~y~l~V~A~D~g~p~~s~~~~v~I~V~DvNDn~P 119 (119)
T 2yst_A 80 DREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119 (119)
T ss_dssp CTTTCSEEEEEEEECCSBTTBCCEEEEEEEEEECSTTCCC
T ss_pred CcccCCEEEEEEEEEECCCCCcEEEEEEEEEEEeccCCCC
Confidence 9999999999999999999999999999999999999998
No 33
>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*
Probab=99.92 E-value=1.3e-23 Score=208.58 Aligned_cols=162 Identities=20% Similarity=0.233 Sum_probs=126.9
Q ss_pred EEEeCCCcEEEEe---ecCC-CCcceEEEEEEEeeCCccccceecCCCcEEEEEEEEEecccCCCCCCCeEEEEEEEEEE
Q psy1887 223 IVVPEVLGTYLLW---RHLS-GPKNMYLMREIRLSKPYRELHTVASGQPVILMVLAEEERKDLNEPSPQSSTATIALVFD 298 (653)
Q Consensus 223 ~~i~e~~G~i~~~---~~lD-e~~~~y~l~~~~~~~~ld~~~~~~~~~~~~l~V~A~d~~~d~~~~~~~s~~~~v~i~V~ 298 (653)
|.|++.+|.+++. +.|| |....|.+.+ +.+.|.+ ...+..+.+.|+|.|.
T Consensus 65 f~id~~tg~~~l~~t~~~LDrE~~~~~~~~~--------------------~~v~~~~------~~~~~~~~~~V~I~V~ 118 (242)
T 4apx_B 65 VLLDPVKQMLFLNSTGRVLDRDPPMNIHSIV--------------------VQVQCVN------KKVGTVIYHEVRIVVR 118 (242)
T ss_dssp EEEETTTTEEEECCTTSCCCCSTTTCCCEEE--------------------EEEEEEE------TTTCCEEEEEEEEEEE
T ss_pred EEECCCCCEEEEEecCCceeccCCCceEEEE--------------------EEEEeEC------CCCCeEEEEEEEEEEE
Confidence 6677777887764 4588 7766665544 3445554 1234667789999999
Q ss_pred ccCCCCCeecCCceEEEEeCCCCCCcEEEeeeceeeEEeeCCCCcceEEEEEEecCC------CcEEEcc-cceeeeeeE
Q psy1887 299 QAINTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLENNN------GTFEIWP-SVVERKAQF 371 (653)
Q Consensus 299 dvNd~~P~f~~~~~~~~v~En~~~gt~v~~v~~~~~~a~D~D~g~n~~~~~~~~~~~------~~F~I~~-~tg~~~~~~ 371 (653)
|+|||+|.|.+..|.++|+||+++|+.|.++....+.|+|+|.|.|++++|++.... +.|.|++ .+|.
T Consensus 119 DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~~~~~~v~A~D~D~g~N~~v~Ysi~~~~~~~~~~~~F~Id~~~tG~----- 193 (242)
T 4apx_B 119 DRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQYNPEDPTSNDTFEIPLMLTGN----- 193 (242)
T ss_dssp CCCCCCCEESSSCEEEEEETTCCTTCEEECTTTTTTSEECCSSGGGGCEEEEEECCTTSTTHHHHEECSSTTTCC-----
T ss_pred eCCCCCCcccceeeeeEeeeccCCCCEEEEeeecccccccCCCCcCCceEEEEecCCCCcccccceEEcCCCceE-----
Confidence 999999999999999999999999999976322235899999999999999884332 3699995 5897
Q ss_pred EEEEecCCCCCccCCCeEEEEEEEEECCCCCCCCCceEEEEEEEEEee
Q psy1887 372 TIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYIND 419 (653)
Q Consensus 372 ~i~l~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~D 419 (653)
|++.++||||+.+.|.|+|+|+|.|.+. ...+++.+.|+|+|+.
T Consensus 194 ---i~~~~~LD~E~~~~y~l~V~A~D~G~~~-~~~~~~~~~vtVnVe~ 237 (242)
T 4apx_B 194 ---VVLRKRLNYEDKTRYYVIIQANDRAQNL-NERRTTTTTLTVDLEH 237 (242)
T ss_dssp ---EEECSCCCTTTCCEEEEEEEEEECCSSG-GGCCEEEEEEEEEEEC
T ss_pred ---EEECCcCChhhCCEEEEEEEEEECCcCc-hhcccCCceEEEEEee
Confidence 7889999999999999999999988211 1147888999999874
No 34
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.91 E-value=1.1e-24 Score=190.80 Aligned_cols=110 Identities=34% Similarity=0.400 Sum_probs=102.2
Q ss_pred EEEeecCCCCCeecccceEEEeeCCCCCCcEEEEEEEeeCCCCCCceEEEEEEcC---CCCcceEEeCCCCeEEEEcCcc
Q psy1887 415 VYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILG---YKNSSLELDAHTGDITIANGQQ 491 (653)
Q Consensus 415 I~V~DvNDn~P~f~~~~y~~~V~E~~~~gt~v~~v~a~D~D~g~n~~i~y~i~~~---~~~~~F~Id~~tG~i~~~~~~~ 491 (653)
|+|+|+|||+|.|.+..|.++|+|++++|+.|++++|+|+|.|.|++++|+|... +...+|.|++.+|.|+++ ++
T Consensus 2 ~~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v~A~D~D~g~n~~i~Y~i~~~~~~~~~~~F~Id~~tG~I~~~--~~ 79 (114)
T 2ee0_A 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQ--RS 79 (114)
T ss_dssp CCCCCCCCCCCCCSCSEEEEEEETTCCTTCEEEECCCCSCSSCCCSCCEEEECSSCCHHHHHHEEECTTTCEEEEC--SC
T ss_pred CeEeeCCCCCCCcCCCcEEEEEECCCCCCCEEEEEEEEeCCCCCCcEEEEEEccCCCCCccceEEEeCCeeEEEEC--cc
Confidence 5689999999999999999999999999999999999999999999999998753 345689999999999998 89
Q ss_pred CCccCccEEEEEEEEEECCCCCceEEEEEEEEEEecC
Q psy1887 492 FDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVN 528 (653)
Q Consensus 492 lD~E~~~~~~l~V~a~D~g~~~~~~~~~v~I~V~DvN 528 (653)
||||....|.|+|+|+|+|.++ ++++|+|+|+|+|
T Consensus 80 LD~E~~~~y~l~V~A~D~g~~~--~~~~v~I~V~DvN 114 (114)
T 2ee0_A 80 LDREETAIHKVTVLASDGSSTP--ARATVTINVTDVN 114 (114)
T ss_dssp CCTTTCSEEEEEEEEESSSSSC--EEEEEEEEEECCC
T ss_pred CCcccCcEEEEEEEEEECCCCc--eEEEEEEEEEECC
Confidence 9999999999999999998876 7889999999998
No 35
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.90 E-value=3.6e-24 Score=189.30 Aligned_cols=114 Identities=23% Similarity=0.324 Sum_probs=105.3
Q ss_pred EEEEccCCCCCeecCCceEEEEeCCCCCCcEEEeeeceeeEEeeCCCCcceEEEEEEecCC----CcEEEcccceeeeee
Q psy1887 295 LVFDQAINTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLENNN----GTFEIWPSVVERKAQ 370 (653)
Q Consensus 295 i~V~dvNd~~P~f~~~~~~~~v~En~~~gt~v~~v~~~~~~a~D~D~g~n~~~~~~~~~~~----~~F~I~~~tg~~~~~ 370 (653)
+.|.|+|||+|.|.+..|.++|+|++++|+.|+++ .|+|+|.|.|++++|++.+.. ++|.|++.+|.
T Consensus 2 ~~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v-----~A~D~D~g~n~~i~Y~i~~~~~~~~~~F~Id~~tG~---- 72 (119)
T 2yst_A 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQL-----RAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGW---- 72 (119)
T ss_dssp CCCCCSCCCCCCCSSSEEEEEEETTCCTTCEEEEC-----CCCCSSSSCCSCCCCEECSCCTTHHHHEEECTTTCE----
T ss_pred CeEecCCCCCCCcCCCcEEEEEECCCCCCCEEEEE-----EEEeCCCCCCCeEEEEEecCCCccccEEEEeCCceE----
Confidence 46899999999999999999999999999999984 999999999999999985543 58999999997
Q ss_pred EEEEEecCCCCCccCCCeEEEEEEEEECCCCCCCCCceEEEEEEEEEeecCCCCC
Q psy1887 371 FTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPP 425 (653)
Q Consensus 371 ~~i~l~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvNDn~P 425 (653)
|++.++||||..+.|.|+|+|+|.| .+++++++.|+|+|+|+|||+|
T Consensus 73 ----I~~~~~LD~E~~~~y~l~V~A~D~g----~p~~s~~~~v~I~V~DvNDn~P 119 (119)
T 2yst_A 73 ----LSVLHRIDREEVNQLRFTVMARDRG----QPPKTDKATVVLNIKDENDNVP 119 (119)
T ss_dssp ----EEECSCCCTTTCSEEEEEEEECCSB----TTBCCEEEEEEEEEECSTTCCC
T ss_pred ----EEECccCCcccCCEEEEEEEEEECC----CCCcEEEEEEEEEEEeccCCCC
Confidence 7788999999999999999999998 6678999999999999999998
No 36
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=3.3e-22 Score=177.34 Aligned_cols=115 Identities=20% Similarity=0.345 Sum_probs=106.3
Q ss_pred cCCCCCeecccceEEEeeCCCCCCcEEEEEEEeeCCCCCCceEEEEEEcC----CCCcceEEeCCCCeEEEEcCccCCcc
Q psy1887 420 VNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILG----YKNSSLELDAHTGDITIANGQQFDRE 495 (653)
Q Consensus 420 vNDn~P~f~~~~y~~~V~E~~~~gt~v~~v~a~D~D~g~n~~i~y~i~~~----~~~~~F~Id~~tG~i~~~~~~~lD~E 495 (653)
.+.+.|.|....|.+.+.|++++|+.|+++. +|+|.|.|+.++|+|..+ +..+.|.|++.+|.|+++ ++||||
T Consensus 5 ~~r~~p~f~~~~~~v~e~e~~~~gt~v~~v~-~D~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~--~~LDrE 81 (123)
T 2yqg_A 5 SSGQKRAWITAPVALREGEDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVT--SILDRE 81 (123)
T ss_dssp SSCSCCSSCCCCEEEESSSCCCSSCCCBCCC-CHHHHHHTCCCEEEEEEBTTTBSSCSSEEEETTTTEEEEC--SCCBTT
T ss_pred ccccCCccCCCCEEEEecCCCCCCCEEEEEE-ECCCCCCCceEEEEEecCCCCCCcCCCEEEeCCcCEEEEC--cccCcc
Confidence 3578999999999999999999999999999 699999999999999875 345789999999999998 899999
Q ss_pred CccEEEEEEEEEECCCCCceEEEEEEEEEEecCCCCCeEeec
Q psy1887 496 EASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQT 537 (653)
Q Consensus 496 ~~~~~~l~V~a~D~g~~~~~~~~~v~I~V~DvNDn~P~f~~~ 537 (653)
....|.|+|.|+|+|.|++++++.|.|+|+|+|||+|+|.++
T Consensus 82 ~~~~y~l~V~A~D~g~p~~~~~~~v~I~V~DvNDn~P~F~~~ 123 (123)
T 2yqg_A 82 ETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQD 123 (123)
T ss_dssp TBSEEEEEEEEECTTCCEEEEEECCEEEEECTTCCCCCCCCC
T ss_pred cCceEEEEEEEEECCCCceEEEEEEEEEEEEcCCCCCEeCCC
Confidence 999999999999999999999999999999999999999763
No 37
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=9.2e-22 Score=172.21 Aligned_cols=108 Identities=25% Similarity=0.338 Sum_probs=97.9
Q ss_pred EEEEccCCCCCeecCCceEEEEeCCCCCCcEEEeeeceeeEEeeCCCCcceEEEEEEec-----CCCcEEEcccceeeee
Q psy1887 295 LVFDQAINTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLEN-----NNGTFEIWPSVVERKA 369 (653)
Q Consensus 295 i~V~dvNd~~P~f~~~~~~~~v~En~~~gt~v~~v~~~~~~a~D~D~g~n~~~~~~~~~-----~~~~F~I~~~tg~~~~ 369 (653)
+.|.|+|||+|.|.+..|.++|+||+++|+.|+++ .|+|+|.|.|++++|++.. ..++|.|++.+|.
T Consensus 2 ~~V~DvNDn~P~F~~~~y~~~v~En~~~Gt~v~~v-----~A~D~D~g~n~~i~Y~i~~~~~~~~~~~F~Id~~tG~--- 73 (114)
T 2ee0_A 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQL-----HATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGL--- 73 (114)
T ss_dssp CCCCCCCCCCCCCSCSEEEEEEETTCCTTCEEEEC-----CCCSCSSCCCSCCEEEECSSCCHHHHHHEEECTTTCE---
T ss_pred CeEeeCCCCCCCcCCCcEEEEEECCCCCCCEEEEE-----EEEeCCCCCCcEEEEEEccCCCCCccceEEEeCCeeE---
Confidence 46899999999999999999999999999999984 9999999999999999854 3468999999997
Q ss_pred eEEEEEecCCCCCccCCCeEEEEEEEEECCCCCCCCCceEEEEEEEEEeecC
Q psy1887 370 QFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVN 421 (653)
Q Consensus 370 ~~~i~l~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvN 421 (653)
|++.++||||..+.|.|+|+|+|.+ .+ +++++|+|+|+|+|
T Consensus 74 -----I~~~~~LD~E~~~~y~l~V~A~D~g----~~--~~~~~v~I~V~DvN 114 (114)
T 2ee0_A 74 -----ITVQRSLDREETAIHKVTVLASDGS----ST--PARATVTINVTDVN 114 (114)
T ss_dssp -----EEECSCCCTTTCSEEEEEEEEESSS----SS--CEEEEEEEEEECCC
T ss_pred -----EEECccCCcccCcEEEEEEEEEECC----CC--ceEEEEEEEEEECC
Confidence 7888999999999999999999988 23 37899999999998
No 38
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A
Probab=99.80 E-value=7.2e-20 Score=158.96 Aligned_cols=99 Identities=18% Similarity=0.386 Sum_probs=80.4
Q ss_pred ceEEEeeCCCCCCcE--EEEEEEeeCCCCCCceEEEEEEcC----CCCcceEEeCCCCeEEEEcCccCCccCccEEEEEE
Q psy1887 431 LYTAKIPENATAGEK--VVQVKATDVDTNLGGEILYTAILG----YKNSSLELDAHTGDITIANGQQFDREEASEYKFQV 504 (653)
Q Consensus 431 ~y~~~V~E~~~~gt~--v~~v~a~D~D~g~n~~i~y~i~~~----~~~~~F~Id~~tG~i~~~~~~~lD~E~~~~~~l~V 504 (653)
.|.++|+||+++|+. |+++ |.|.|.|++++|+|..+ +..+.|.|++.+|.|++. ++||||....|.|+|
T Consensus 6 ~~~~~v~En~~~gt~~~v~~v---d~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~--~~LDrE~~~~y~l~V 80 (110)
T 1ncg_A 6 IPPINLPENSRGPFPQELVRI---RSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVT--KPLDRELIARFHLRA 80 (110)
T ss_dssp CCCEEECSSCCCCSSEEEEEC---CCGGGGGSCCEEEEESBTTTBSSTTSEEECTTTCEEEEC--SCCCTTTCCEEEEEE
T ss_pred eeeEEEeCCCCCCCcEEEEEE---eCCCCCCCEEEEEEeCCCCCCCcCCEEEEECCCCEEEEC--CcCCcccCCeEEEEE
Confidence 467899999999995 5554 67777899999999863 456789999999999998 899999999999999
Q ss_pred EEEECCCCCceEEEEEEEEEEecCCCCCeE
Q psy1887 505 EARDMQGLGLRTVVPLQLTILDVNDNAPIF 534 (653)
Q Consensus 505 ~a~D~g~~~~~~~~~v~I~V~DvNDn~P~f 534 (653)
.|+|+|.|++++++.|.|+|+|+|||+|+|
T Consensus 81 ~A~D~g~p~~~~~~~v~I~V~DvNDn~P~F 110 (110)
T 1ncg_A 81 HAVDINGNQVENPIDIVINVIDMNDNRPEF 110 (110)
T ss_dssp EEECTTSCBCSCCEEEEEEEC---------
T ss_pred EEEECCCCceeeEEEEEEEEEECCCCCCCC
Confidence 999999999999999999999999999998
No 39
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.8e-20 Score=162.88 Aligned_cols=112 Identities=18% Similarity=0.144 Sum_probs=100.7
Q ss_pred CCCCCeecCCceEEEEeCCCCCCcEEEeeeceeeEEeeCCCCcceEEEEEEec------CCCcEEEcccceeeeeeEEEE
Q psy1887 301 INTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLEN------NNGTFEIWPSVVERKAQFTIR 374 (653)
Q Consensus 301 Nd~~P~f~~~~~~~~v~En~~~gt~v~~v~~~~~~a~D~D~g~n~~~~~~~~~------~~~~F~I~~~tg~~~~~~~i~ 374 (653)
+.+.|.|....|.+.+.|++++|+.|+++ . +|.|.|.|+.++|++.+ ..+.|.|++.+|.
T Consensus 6 ~r~~p~f~~~~~~v~e~e~~~~gt~v~~v-----~-~D~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~-------- 71 (123)
T 2yqg_A 6 SGQKRAWITAPVALREGEDLSKKNPIAKI-----H-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGE-------- 71 (123)
T ss_dssp SCSCCSSCCCCEEEESSSCCCSSCCCBCC-----C-CHHHHHHTCCCEEEEEEBTTTBSSCSSEEEETTTTE--------
T ss_pred cccCCccCCCCEEEEecCCCCCCCEEEEE-----E-ECCCCCCCceEEEEEecCCCCCCcCCCEEEeCCcCE--------
Confidence 57899999999999999999999999985 6 69999999988888743 3478999999997
Q ss_pred EecCCCCCccCCCeEEEEEEEEECCCCCCCCCceEEEEEEEEEeecCCCCCeeccc
Q psy1887 375 VRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTAT 430 (653)
Q Consensus 375 l~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~ 430 (653)
|++.++||||+.+.|.|+|.|+|.+ .+++++++.|+|+|+|+|||+|.|.++
T Consensus 72 i~~~~~LDrE~~~~y~l~V~A~D~g----~p~~~~~~~v~I~V~DvNDn~P~F~~~ 123 (123)
T 2yqg_A 72 LNVTSILDREETPFFLLTGYALDAR----GNNVEKPLELRIKVLDINDNEPVFTQD 123 (123)
T ss_dssp EEECSCCBTTTBSEEEEEEEEECTT----CCEEEEEECCEEEEECTTCCCCCCCCC
T ss_pred EEECcccCcccCceEEEEEEEEECC----CCceEEEEEEEEEEEEcCCCCCEeCCC
Confidence 7889999999999999999999988 678999999999999999999999753
No 40
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=3.6e-19 Score=157.81 Aligned_cols=107 Identities=21% Similarity=0.284 Sum_probs=93.2
Q ss_pred ccceEEEeeCCCCCCcEEEEEEEeeCCCCCCceE---EEEEEcCCCCcceEEeCCCCeEEEEcCccCCccCc----cEEE
Q psy1887 429 ATLYTAKIPENATAGEKVVQVKATDVDTNLGGEI---LYTAILGYKNSSLELDAHTGDITIANGQQFDREEA----SEYK 501 (653)
Q Consensus 429 ~~~y~~~V~E~~~~gt~v~~v~a~D~D~g~n~~i---~y~i~~~~~~~~F~Id~~tG~i~~~~~~~lD~E~~----~~~~ 501 (653)
...|..+|+|+.++|+.|+++ |+|+|.+. +.+ +|+|.+++....|.||+.||.|++. ++||||.. ..|.
T Consensus 10 ~~~~~~~V~E~~~~Gt~V~~v-a~D~d~~~-~~i~~~~Y~i~~~~~~~~F~Id~~tG~i~~~--~~LDRE~~c~~~~~y~ 85 (125)
T 1wyj_A 10 SATITYSVLEETDRGSLVGNL-AKDLGLSL-RELITRGAQILSKGNKQLLQLEQKSGNLLLK--EKLDREELCGSTNPCI 85 (125)
T ss_dssp CCCCCEEECSSCCTTCEEEES-TTTTTCCH-HHHHHTTCEEECSSSSCSEEECSSSSEEEES--SCCCSTTTCTTCSSCC
T ss_pred CceEEEEEECCCCCCCEEEEE-EecCCCCC-CceeeEEEEEecCCCCCeEEEECCccEEEEC--ccccchhhcccCCcEE
Confidence 456678899999999999999 99999763 345 8999988777899999999999998 89999999 9999
Q ss_pred EEEEEEECCCCCceEEEEEEEEEEecCCCCCeEeecCcEEE
Q psy1887 502 FQVEARDMQGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFV 542 (653)
Q Consensus 502 l~V~a~D~g~~~~~~~~~v~I~V~DvNDn~P~f~~~~y~~~ 542 (653)
|.|+|.+. +++ ..++|.|+|+|+|||+|+|.++.|.++
T Consensus 86 l~v~a~~~--~p~-~~~~V~I~V~DvNDN~P~F~~~~y~vs 123 (125)
T 1wyj_A 86 LHFQVLLK--SPV-QFIQGEIQLQDVNDHAPEFMEDESGPS 123 (125)
T ss_dssp BCCEEEET--TTT-EEECCCEEECCCCCCCCCCCCCCCCCC
T ss_pred EEEEEEEC--CCC-eEEEEEEEEEEccCCCCcCCCcEEEEe
Confidence 99999984 333 478999999999999999999988754
No 41
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A
Probab=99.73 E-value=6.2e-18 Score=146.71 Aligned_cols=98 Identities=23% Similarity=0.277 Sum_probs=76.2
Q ss_pred eEEEEeCCCCCCcEEEeeeceeeEEeeCCCCcceEEEEEEec------CCCcEEEcccceeeeeeEEEEEecCCCCCccC
Q psy1887 312 YITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLEN------NNGTFEIWPSVVERKAQFTIRVRNNKNLDYER 385 (653)
Q Consensus 312 ~~~~v~En~~~gt~v~~v~~~~~~a~D~D~g~n~~~~~~~~~------~~~~F~I~~~tg~~~~~~~i~l~~~~~LD~E~ 385 (653)
|.++|+||++.|+.+.. +++ |.|.|.|+.++|++.+ ..+.|.|++.+|. |++.++||||+
T Consensus 7 ~~~~v~En~~~gt~~~v-----~~v-d~D~g~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~--------i~~~~~LDrE~ 72 (110)
T 1ncg_A 7 PPINLPENSRGPFPQEL-----VRI-RSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQ--------LSVTKPLDREL 72 (110)
T ss_dssp CCEEECSSCCCCSSEEE-----EEC-CCGGGGGSCCEEEEESBTTTBSSTTSEEECTTTCE--------EEECSCCCTTT
T ss_pred eeEEEeCCCCCCCcEEE-----EEE-eCCCCCCCEEEEEEeCCCCCCCcCCEEEEECCCCE--------EEECCcCCccc
Confidence 67899999999996432 133 7888899988888853 3468999999997 78899999999
Q ss_pred CCeEEEEEEEEECCCCCCCCCceEEEEEEEEEeecCCCCCee
Q psy1887 386 TRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVF 427 (653)
Q Consensus 386 ~~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f 427 (653)
.+.|.|+|.|+|.+ .+++++++.|+|+|+|+|||+|+|
T Consensus 73 ~~~y~l~V~A~D~g----~p~~~~~~~v~I~V~DvNDn~P~F 110 (110)
T 1ncg_A 73 IARFHLRAHAVDIN----GNQVENPIDIVINVIDMNDNRPEF 110 (110)
T ss_dssp CCEEEEEEEEECTT----SCBCSCCEEEEEEEC---------
T ss_pred CCeEEEEEEEEECC----CCceeeEEEEEEEEEECCCCCCCC
Confidence 99999999999988 668899999999999999999998
No 42
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Probab=99.71 E-value=3.7e-17 Score=138.49 Aligned_cols=91 Identities=27% Similarity=0.335 Sum_probs=83.7
Q ss_pred eEEEeeCCCC--CCcEEEEEEEeeCCCCCCceEEEEEEcCCCCcceEEeCCCCeEEEEcCccCCccCccEEEEEEEEEEC
Q psy1887 432 YTAKIPENAT--AGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDM 509 (653)
Q Consensus 432 y~~~V~E~~~--~gt~v~~v~a~D~D~g~n~~i~y~i~~~~~~~~F~Id~~tG~i~~~~~~~lD~E~~~~~~l~V~a~D~ 509 (653)
+.++|+||.+ .|+.|++++ +|+|.| |++++|+|..+...+.|.|++.+|.|++. ++||||+...|.|+|+|+|+
T Consensus 6 ~~~~v~En~~~~~g~~v~~v~-~D~D~g-Ng~v~Ysi~~~~~~~~F~Id~~tG~i~~~--~~LDrE~~~~y~l~V~A~D~ 81 (99)
T 1zvn_A 6 NQFFVLEEYTGTDPLYVGKLH-SDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAI--QRLDREERSQYTLRAQALDR 81 (99)
T ss_dssp CEEEEEGGGCSSSCEEEEECC-BTTCCS-SSCEEEEEEETTBTTTEEECTTTCEEEEC--SCCCTTTCSEEEEEEEEEET
T ss_pred cEEEEECCCCCCCCcEEEEEE-ECCCCC-CCEEEEEEeCCCCCceEEEeCCCCCEEEC--eecCCccCCeEEEEEEEEEC
Confidence 4678999976 689999999 999999 99999999876666789999999999998 89999999999999999999
Q ss_pred C-CCCceEEEEEEEEEEe
Q psy1887 510 Q-GLGLRTVVPLQLTILD 526 (653)
Q Consensus 510 g-~~~~~~~~~v~I~V~D 526 (653)
| +|++++.+.|.|+|+|
T Consensus 82 G~~p~l~~~~~v~I~V~D 99 (99)
T 1zvn_A 82 RTGRPMEPESEFIIKIQD 99 (99)
T ss_dssp TTCCBSSCCEEEEEEEEC
T ss_pred CCCCCcceeEEEEEEEeC
Confidence 9 5899999999999987
No 43
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A
Probab=99.70 E-value=5.3e-17 Score=137.31 Aligned_cols=91 Identities=23% Similarity=0.304 Sum_probs=81.4
Q ss_pred eEEEeeCCCC--CCcEEEEEEEeeCCCCCCceEEEEEEcCCCCcceEEeCCCCeEEEEcCccCCccCccEEEEEEEEEEC
Q psy1887 432 YTAKIPENAT--AGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDM 509 (653)
Q Consensus 432 y~~~V~E~~~--~gt~v~~v~a~D~D~g~n~~i~y~i~~~~~~~~F~Id~~tG~i~~~~~~~lD~E~~~~~~l~V~a~D~ 509 (653)
+.++|+||.+ .|+.|+++. +|+|.| |++++|+|..+...+.|.||+.+|.|++. ++||||....|.|+|+|+|+
T Consensus 5 ~~~~v~En~~~p~~~~v~~v~-~D~D~g-N~~v~Ysi~~~~~~~~F~Id~~tG~i~~~--~~LDrE~~~~y~l~v~A~D~ 80 (98)
T 1zxk_A 5 NQMFVLEEFSGPEPILVGRLH-TDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAI--KRLDREEKAEYTLTAQAVDF 80 (98)
T ss_dssp CEEEECGGGCSSSCEEEEECC-BCCCCC---CEEEEEEETTBTTTEEECTTTCEEEEC--SCCCTTTCSEEEEEEEEEET
T ss_pred ceEEEECCCCCCCCeEEEEEE-ECCCCC-CCEEEEEEeCCCCCCEEEEECCccEEEEC--ccCCCcCCCeEEEEEEEEEC
Confidence 5678999995 899999997 999999 99999999876555689999999999998 89999999999999999999
Q ss_pred CC-CCceEEEEEEEEEEe
Q psy1887 510 QG-LGLRTVVPLQLTILD 526 (653)
Q Consensus 510 g~-~~~~~~~~v~I~V~D 526 (653)
|. |++++++.|.|+|+|
T Consensus 81 g~~~~l~~~~~v~I~V~D 98 (98)
T 1zxk_A 81 ETNKPLEPPSEFIIKVQD 98 (98)
T ss_dssp TTCCBSSCCEEEEEEECC
T ss_pred CCCCCcceeEEEEEEEEC
Confidence 97 789999999999987
No 44
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=3.1e-17 Score=145.38 Aligned_cols=105 Identities=13% Similarity=0.063 Sum_probs=87.1
Q ss_pred CceEEEEeCCCCCCcEEEeeeceeeEEeeCCCCcce----EEEEEEecCCCcEEEcccceeeeeeEEEEEecCCCCCccC
Q psy1887 310 VQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNG----IFSLTLENNNGTFEIWPSVVERKAQFTIRVRNNKNLDYER 385 (653)
Q Consensus 310 ~~~~~~v~En~~~gt~v~~v~~~~~~a~D~D~g~n~----~~~~~~~~~~~~F~I~~~tg~~~~~~~i~l~~~~~LD~E~ 385 (653)
..|.++|+|+.++|+.|++ + |+|.|.+.+. .|++.-++..+.|.|++.+|. |++.++||||+
T Consensus 11 ~~~~~~V~E~~~~Gt~V~~-----v-a~D~d~~~~~i~~~~Y~i~~~~~~~~F~Id~~tG~--------i~~~~~LDRE~ 76 (125)
T 1wyj_A 11 ATITYSVLEETDRGSLVGN-----L-AKDLGLSLRELITRGAQILSKGNKQLLQLEQKSGN--------LLLKEKLDREE 76 (125)
T ss_dssp CCCCEEECSSCCTTCEEEE-----S-TTTTTCCHHHHHHTTCEEECSSSSCSEEECSSSSE--------EEESSCCCSTT
T ss_pred ceEEEEEECCCCCCCEEEE-----E-EecCCCCCCceeeEEEEEecCCCCCeEEEECCccE--------EEECccccchh
Confidence 4577899999999999997 5 7898877532 344433455679999999997 78889999999
Q ss_pred C----CeEEEEEEEEECCCCCCCCCceEEEEEEEEEeecCCCCCeecccceEEE
Q psy1887 386 T----RTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAK 435 (653)
Q Consensus 386 ~----~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~ 435 (653)
. +.|.|.|+|.+.. ++ ..+.|+|.|+|+|||+|.|.+..|.++
T Consensus 77 ~c~~~~~y~l~v~a~~~~------p~-~~~~V~I~V~DvNDN~P~F~~~~y~vs 123 (125)
T 1wyj_A 77 LCGSTNPCILHFQVLLKS------PV-QFIQGEIQLQDVNDHAPEFMEDESGPS 123 (125)
T ss_dssp TCTTCSSCCBCCEEEETT------TT-EEECCCEEECCCCCCCCCCCCCCCCCC
T ss_pred hcccCCcEEEEEEEEECC------CC-eEEEEEEEEEEccCCCCcCCCcEEEEe
Confidence 9 9999999999754 33 478999999999999999999988764
No 45
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Probab=99.65 E-value=4.8e-16 Score=131.91 Aligned_cols=88 Identities=23% Similarity=0.369 Sum_probs=81.1
Q ss_pred EEEeeCCCCC--CcEEEEEEEeeCCCCCCceEEEEEEc----CCCCcceEEeCCCCeEEEEcCccCCccCccEEEEEEEE
Q psy1887 433 TAKIPENATA--GEKVVQVKATDVDTNLGGEILYTAIL----GYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEA 506 (653)
Q Consensus 433 ~~~V~E~~~~--gt~v~~v~a~D~D~g~n~~i~y~i~~----~~~~~~F~Id~~tG~i~~~~~~~lD~E~~~~~~l~V~a 506 (653)
.++|+||.++ |+.|++++|+|+|. +++|+|.. ++..+.|.|++.+|.|++. ++||||....|.|+|+|
T Consensus 6 ~~~V~En~~~~~g~~v~~v~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~--~~LDrE~~~~y~l~V~A 79 (99)
T 3k6d_A 6 SISIPENQRIPFPKIVGRVVVSDRIP----GSKIKLYGKGVDQEPKGIFKINENSGEVSVT--KALDREAIPSYQLQVET 79 (99)
T ss_dssp CEEEETTCCSCSSEEEEECBCSSCCT----TCEEEEESBTTTBSSTTSEEECTTTCEEEEC--SCCCTTTCCEEEEEEEE
T ss_pred cEEEeCCCCCCCCcEEEEEEEECCCC----cEEEEEecCcCCCCCCCEEEEECCceEEEEC--cCCCcccCceEEEEEEE
Confidence 5789999999 99999999999995 79999875 3455789999999999998 89999999999999999
Q ss_pred EECCCCCceEEEEEEEEEEe
Q psy1887 507 RDMQGLGLRTVVPLQLTILD 526 (653)
Q Consensus 507 ~D~g~~~~~~~~~v~I~V~D 526 (653)
+|+|++++++.+.|+|+|+|
T Consensus 80 ~D~g~~~l~~~~~v~I~V~D 99 (99)
T 3k6d_A 80 TDENGKTIEGPVDLEILVID 99 (99)
T ss_dssp ECTTCCEEEEEEEEEEEEEC
T ss_pred EECCCCceeeEEEEEEEEEC
Confidence 99999999999999999987
No 46
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}
Probab=99.63 E-value=1.5e-15 Score=129.16 Aligned_cols=88 Identities=25% Similarity=0.422 Sum_probs=80.4
Q ss_pred EEEeeCCCCC--CcEEEEEEEeeCCCCCCceEEEEEEcC----CCCcceEEeCCCCeEEEEcCccCCccCccEEEEEEEE
Q psy1887 433 TAKIPENATA--GEKVVQVKATDVDTNLGGEILYTAILG----YKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEA 506 (653)
Q Consensus 433 ~~~V~E~~~~--gt~v~~v~a~D~D~g~n~~i~y~i~~~----~~~~~F~Id~~tG~i~~~~~~~lD~E~~~~~~l~V~a 506 (653)
.++|+||.+. |+.|++|+|+|+|. .++|+|... +..+.|.|++.+|.|++. ++||||....|.|+|+|
T Consensus 7 ~~~V~EN~~~~~g~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~--~~LDrE~~~~y~l~V~A 80 (100)
T 3k6f_A 7 PILIPENQRQPFPRDVGKVVDSDRPE----GSKFRLTGKGVDQDPKGTFRINENTGSVSVT--RTLDRETIATYQLYVET 80 (100)
T ss_dssp CEEEETTCCSSSCEEEEECEETTCCT----TCEEEEEEBTTTBSSTTSEEECTTTCEEEEC--SCCCTTTCSEEEEEEEE
T ss_pred cEEEeCCCCCCCCcEEEEEEEEcCCC----CEEEEEeCCCCCCCcCCEEEEECCCCEEEEC--cccCCcCCCEEEEEEEE
Confidence 5689999998 89999999999996 699998752 345789999999999998 89999999999999999
Q ss_pred EECCCCCceEEEEEEEEEEe
Q psy1887 507 RDMQGLGLRTVVPLQLTILD 526 (653)
Q Consensus 507 ~D~g~~~~~~~~~v~I~V~D 526 (653)
+|+|.|++++.+.|.|+|+|
T Consensus 81 ~D~g~p~l~~~~~v~I~V~D 100 (100)
T 3k6f_A 81 TDASGKTLEGPVPLEVIVID 100 (100)
T ss_dssp ECTTCCEEEEEEEEEEEEEC
T ss_pred EECCCCcccceEEEEEEEEC
Confidence 99999999999999999987
No 47
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}
Probab=99.63 E-value=2.1e-15 Score=128.00 Aligned_cols=88 Identities=22% Similarity=0.379 Sum_probs=80.2
Q ss_pred EEEeeCCCCCC--cEEEEEEEeeCCCCCCceEEEEEEcC----CCCcceEEeCCCCeEEEEcCccCCccCccEEEEEEEE
Q psy1887 433 TAKIPENATAG--EKVVQVKATDVDTNLGGEILYTAILG----YKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEA 506 (653)
Q Consensus 433 ~~~V~E~~~~g--t~v~~v~a~D~D~g~n~~i~y~i~~~----~~~~~F~Id~~tG~i~~~~~~~lD~E~~~~~~l~V~a 506 (653)
.++|+||.+.| +.|++|+|+|+|. +++|+|... +..+.|.|++.+|.|++. ++||||....|.|+|+|
T Consensus 6 ~~~v~EN~~~g~~~~v~~V~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~--~~LDrE~~~~y~l~v~A 79 (99)
T 3k6i_A 6 PILIPENQRPPFPRSVGKVIRSEGTE----GAKFRLSGKGVDQDPKGIFRINEISGDVSVT--RPLDREAIANYELEVEV 79 (99)
T ss_dssp CEEEETTCCSSSCEEEEECEETTCCS----SEEEEEESBTTTBSSTTSEEECTTTCEEEEC--SCCCTTTCCEEEEEEEE
T ss_pred cEEEeCCCCCCCCeEEEEEEEEcCCC----eEEEEEeCCCCCCCcCCEEEEECCCcEEEEC--cccCCccCCEEEEEEEE
Confidence 46799999987 8999999999996 799998752 345789999999999998 89999999999999999
Q ss_pred EECCCCCceEEEEEEEEEEe
Q psy1887 507 RDMQGLGLRTVVPLQLTILD 526 (653)
Q Consensus 507 ~D~g~~~~~~~~~v~I~V~D 526 (653)
+|+|+|++++.+.|.|+|+|
T Consensus 80 ~D~g~~~l~~~~~v~I~V~D 99 (99)
T 3k6i_A 80 TDLSGKIIDGPVRLDISVID 99 (99)
T ss_dssp EETTSCEEEEEEEEEEEEEC
T ss_pred EECCCCceeeeEEEEEEEEC
Confidence 99999999999999999987
No 48
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Probab=99.61 E-value=1e-15 Score=131.37 Aligned_cols=90 Identities=20% Similarity=0.338 Sum_probs=79.7
Q ss_pred EEEeeCCCC--CCcEEEEEEEeeCCCCCCceEEEEEEcCCC----CcceEEeCCCCeEEEEcCccCCccCccEEEEEEEE
Q psy1887 433 TAKIPENAT--AGEKVVQVKATDVDTNLGGEILYTAILGYK----NSSLELDAHTGDITIANGQQFDREEASEYKFQVEA 506 (653)
Q Consensus 433 ~~~V~E~~~--~gt~v~~v~a~D~D~g~n~~i~y~i~~~~~----~~~F~Id~~tG~i~~~~~~~lD~E~~~~~~l~V~a 506 (653)
.++|+||.+ .|+.|+++.| |. |.|++++|+|..++. .+.|.||+.+|.|++. ++||||+...|.|+|+|
T Consensus 10 ~~~V~En~~~~~~~~v~~v~A-d~--g~N~~i~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~--~~LDrE~~~~y~l~V~A 84 (105)
T 2omz_B 10 PISCPENEKGPFPKNLVQIKS-NK--DKEGKVFYSITGQGADTPPVGVFIIERETGWLKVT--EPLDRERIATYTLFSHA 84 (105)
T ss_dssp CCCEESSCCSSSSEEEEECEE-GG--GGSSCCEEEEEEBTTTBSSTTSEEECTTTCEEEEC--SCCCTTTCCEEEEEEEE
T ss_pred CEEEeCCCCCCCCcEEEEEEC-CC--CCCCeEEEEEeCCCCCCCccCEEEEeCCCCEEEEC--ccCCcCCCCeEEEEEEE
Confidence 467999999 5889999999 33 579999999987643 3589999999999998 89999999999999999
Q ss_pred EECCCCCceEEEEEEEEEEec
Q psy1887 507 RDMQGLGLRTVVPLQLTILDV 527 (653)
Q Consensus 507 ~D~g~~~~~~~~~v~I~V~Dv 527 (653)
+|+|.|++++++.|+|+|+|+
T Consensus 85 ~D~g~p~~~~~~~v~I~V~Dv 105 (105)
T 2omz_B 85 VSSNGNAVEDPMEILITVTDQ 105 (105)
T ss_dssp ECTTSCBSSCCEEEEEEEEC-
T ss_pred EECCCCceeeEEEEEEEEEeC
Confidence 999999999999999999996
No 49
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Probab=99.56 E-value=1.4e-14 Score=122.50 Aligned_cols=90 Identities=14% Similarity=0.155 Sum_probs=78.2
Q ss_pred eEEEEeCCCC--CCcEEEeeeceeeEEeeCCCCcceEEEEEEecC--CCcEEEcccceeeeeeEEEEEecCCCCCccCCC
Q psy1887 312 YITHLDENSP--QGTALIFAESFHTQVTDDNMGKNGIFSLTLENN--NGTFEIWPSVVERKAQFTIRVRNNKNLDYERTR 387 (653)
Q Consensus 312 ~~~~v~En~~--~gt~v~~v~~~~~~a~D~D~g~n~~~~~~~~~~--~~~F~I~~~tg~~~~~~~i~l~~~~~LD~E~~~ 387 (653)
+.++|+||.+ .|+.|+++ + +|+|.| |++++|++.+. .+.|.|++.+|. |++.++||||+++
T Consensus 6 ~~~~v~En~~~~~g~~v~~v-----~-~D~D~g-Ng~v~Ysi~~~~~~~~F~Id~~tG~--------i~~~~~LDrE~~~ 70 (99)
T 1zvn_A 6 NQFFVLEEYTGTDPLYVGKL-----H-SDMDRG-DGSIKYILSGEGAGIVFTIDDTTGD--------IHAIQRLDREERS 70 (99)
T ss_dssp CEEEEEGGGCSSSCEEEEEC-----C-BTTCCS-SSCEEEEEEETTBTTTEEECTTTCE--------EEECSCCCTTTCS
T ss_pred cEEEEECCCCCCCCcEEEEE-----E-ECCCCC-CCEEEEEEeCCCCCceEEEeCCCCC--------EEECeecCCccCC
Confidence 5689999976 68999984 8 999999 99988888543 357999999997 7788999999999
Q ss_pred eEEEEEEEEECCCCCCCCCceEEEEEEEEEee
Q psy1887 388 TLSFVIVAKEISSDSSSNLLSSQAPVLVYIND 419 (653)
Q Consensus 388 ~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~D 419 (653)
.|.|+|+|+|.| ..+++++.+.|.|+|+|
T Consensus 71 ~y~l~V~A~D~G---~~p~l~~~~~v~I~V~D 99 (99)
T 1zvn_A 71 QYTLRAQALDRR---TGRPMEPESEFIIKIQD 99 (99)
T ss_dssp EEEEEEEEEETT---TCCBSSCCEEEEEEEEC
T ss_pred eEEEEEEEEECC---CCCCcceeEEEEEEEeC
Confidence 999999999987 12678999999999987
No 50
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A
Probab=99.55 E-value=1.6e-14 Score=122.08 Aligned_cols=90 Identities=16% Similarity=0.173 Sum_probs=76.4
Q ss_pred eEEEEeCCCC--CCcEEEeeeceeeEEeeCCCCcceEEEEEEecC--CCcEEEcccceeeeeeEEEEEecCCCCCccCCC
Q psy1887 312 YITHLDENSP--QGTALIFAESFHTQVTDDNMGKNGIFSLTLENN--NGTFEIWPSVVERKAQFTIRVRNNKNLDYERTR 387 (653)
Q Consensus 312 ~~~~v~En~~--~gt~v~~v~~~~~~a~D~D~g~n~~~~~~~~~~--~~~F~I~~~tg~~~~~~~i~l~~~~~LD~E~~~ 387 (653)
+.++|+||.+ .|+.|+++ . +|+|.| |++++|++.+. .+.|.|++.+|. |++.++||||+++
T Consensus 5 ~~~~v~En~~~p~~~~v~~v-----~-~D~D~g-N~~v~Ysi~~~~~~~~F~Id~~tG~--------i~~~~~LDrE~~~ 69 (98)
T 1zxk_A 5 NQMFVLEEFSGPEPILVGRL-----H-TDLDPG-SKKIKYILSGDGAGTIFQINDITGD--------IHAIKRLDREEKA 69 (98)
T ss_dssp CEEEECGGGCSSSCEEEEEC-----C-BCCCCC---CEEEEEEETTBTTTEEECTTTCE--------EEECSCCCTTTCS
T ss_pred ceEEEECCCCCCCCeEEEEE-----E-ECCCCC-CCEEEEEEeCCCCCCEEEEECCccE--------EEECccCCCcCCC
Confidence 5689999995 89999984 6 999999 99989988543 347999999997 8888999999999
Q ss_pred eEEEEEEEEECCCCCCCCCceEEEEEEEEEee
Q psy1887 388 TLSFVIVAKEISSDSSSNLLSSQAPVLVYIND 419 (653)
Q Consensus 388 ~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~D 419 (653)
.|.|+|+|+|.| ..+++++.+.|+|.|+|
T Consensus 70 ~y~l~v~A~D~g---~~~~l~~~~~v~I~V~D 98 (98)
T 1zxk_A 70 EYTLTAQAVDFE---TNKPLEPPSEFIIKVQD 98 (98)
T ss_dssp EEEEEEEEEETT---TCCBSSCCEEEEEEECC
T ss_pred eEEEEEEEEECC---CCCCcceeEEEEEEEEC
Confidence 999999999998 12678999999999987
No 51
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Probab=99.49 E-value=8.8e-14 Score=117.90 Aligned_cols=87 Identities=17% Similarity=0.135 Sum_probs=75.3
Q ss_pred eEEEEeCCCCC--CcEEEeeeceeeEEeeCCCCcceEEEEEEec------CCCcEEEcccceeeeeeEEEEEecCCCCCc
Q psy1887 312 YITHLDENSPQ--GTALIFAESFHTQVTDDNMGKNGIFSLTLEN------NNGTFEIWPSVVERKAQFTIRVRNNKNLDY 383 (653)
Q Consensus 312 ~~~~v~En~~~--gt~v~~v~~~~~~a~D~D~g~n~~~~~~~~~------~~~~F~I~~~tg~~~~~~~i~l~~~~~LD~ 383 (653)
+.++|+||.+. |+.|+++ +|+|+|. .++|++.+ ..+.|.|++.+|. |++.++|||
T Consensus 5 ~~~~V~En~~~~~g~~v~~v-----~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~--------i~~~~~LDr 67 (99)
T 3k6d_A 5 PSISIPENQRIPFPKIVGRV-----VVSDRIP----GSKIKLYGKGVDQEPKGIFKINENSGE--------VSVTKALDR 67 (99)
T ss_dssp CCEEEETTCCSCSSEEEEEC-----BCSSCCT----TCEEEEESBTTTBSSTTSEEECTTTCE--------EEECSCCCT
T ss_pred CcEEEeCCCCCCCCcEEEEE-----EEECCCC----cEEEEEecCcCCCCCCCEEEEECCceE--------EEECcCCCc
Confidence 35799999999 9999985 9999997 34555532 3478999999998 888999999
Q ss_pred cCCCeEEEEEEEEECCCCCCCCCceEEEEEEEEEee
Q psy1887 384 ERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYIND 419 (653)
Q Consensus 384 E~~~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~D 419 (653)
|+.+.|.|+|+|+|.| .+++++.+.|+|+|+|
T Consensus 68 E~~~~y~l~V~A~D~g----~~~l~~~~~v~I~V~D 99 (99)
T 3k6d_A 68 EAIPSYQLQVETTDEN----GKTIEGPVDLEILVID 99 (99)
T ss_dssp TTCCEEEEEEEEECTT----CCEEEEEEEEEEEEEC
T ss_pred ccCceEEEEEEEEECC----CCceeeEEEEEEEEEC
Confidence 9999999999999988 6789999999999987
No 52
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}
Probab=99.46 E-value=3.5e-13 Score=114.22 Aligned_cols=85 Identities=14% Similarity=0.161 Sum_probs=74.0
Q ss_pred EEEeCCCCCC--cEEEeeeceeeEEeeCCCCcceEEEEEEec------CCCcEEEcccceeeeeeEEEEEecCCCCCccC
Q psy1887 314 THLDENSPQG--TALIFAESFHTQVTDDNMGKNGIFSLTLEN------NNGTFEIWPSVVERKAQFTIRVRNNKNLDYER 385 (653)
Q Consensus 314 ~~v~En~~~g--t~v~~v~~~~~~a~D~D~g~n~~~~~~~~~------~~~~F~I~~~tg~~~~~~~i~l~~~~~LD~E~ 385 (653)
++|+||.+.| +.|+++ .|+|+|. .++|++.+ ..+.|.|++.+|. |++.++||||+
T Consensus 7 ~~v~EN~~~g~~~~v~~V-----~A~D~D~----~i~Ysi~~~~~~~~~~~~F~Id~~tG~--------i~~~~~LDrE~ 69 (99)
T 3k6i_A 7 ILIPENQRPPFPRSVGKV-----IRSEGTE----GAKFRLSGKGVDQDPKGIFRINEISGD--------VSVTRPLDREA 69 (99)
T ss_dssp EEEETTCCSSSCEEEEEC-----EETTCCS----SEEEEEESBTTTBSSTTSEEECTTTCE--------EEECSCCCTTT
T ss_pred EEEeCCCCCCCCeEEEEE-----EEEcCCC----eEEEEEeCCCCCCCcCCEEEEECCCcE--------EEECcccCCcc
Confidence 6899999997 889884 9999997 45566532 2368999999998 88899999999
Q ss_pred CCeEEEEEEEEECCCCCCCCCceEEEEEEEEEee
Q psy1887 386 TRTLSFVIVAKEISSDSSSNLLSSQAPVLVYIND 419 (653)
Q Consensus 386 ~~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~D 419 (653)
.+.|.|+|+|+|.| .+++++.+.|+|.|+|
T Consensus 70 ~~~y~l~v~A~D~g----~~~l~~~~~v~I~V~D 99 (99)
T 3k6i_A 70 IANYELEVEVTDLS----GKIIDGPVRLDISVID 99 (99)
T ss_dssp CCEEEEEEEEEETT----SCEEEEEEEEEEEEEC
T ss_pred CCEEEEEEEEEECC----CCceeeeEEEEEEEEC
Confidence 99999999999988 6789999999999987
No 53
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}
Probab=99.45 E-value=6.1e-13 Score=112.88 Aligned_cols=88 Identities=24% Similarity=0.245 Sum_probs=74.4
Q ss_pred EEEEeCCCCC--CcEEEeeeceeeEEeeCCCCcceEEEEEEe----cCCCcEEEcccceeeeeeEEEEEecCCCCCccCC
Q psy1887 313 ITHLDENSPQ--GTALIFAESFHTQVTDDNMGKNGIFSLTLE----NNNGTFEIWPSVVERKAQFTIRVRNNKNLDYERT 386 (653)
Q Consensus 313 ~~~v~En~~~--gt~v~~v~~~~~~a~D~D~g~n~~~~~~~~----~~~~~F~I~~~tg~~~~~~~i~l~~~~~LD~E~~ 386 (653)
.++|+||.+. |+.|+++ .|+|+|. ...|++.-. +..+.|.|++.+|. |++.++||||+.
T Consensus 7 ~~~V~EN~~~~~g~~v~~V-----~A~D~D~--~i~Ysi~~~~~~~~~~~~F~Id~~tG~--------i~~~~~LDrE~~ 71 (100)
T 3k6f_A 7 PILIPENQRQPFPRDVGKV-----VDSDRPE--GSKFRLTGKGVDQDPKGTFRINENTGS--------VSVTRTLDRETI 71 (100)
T ss_dssp CEEEETTCCSSSCEEEEEC-----EETTCCT--TCEEEEEEBTTTBSSTTSEEECTTTCE--------EEECSCCCTTTC
T ss_pred cEEEeCCCCCCCCcEEEEE-----EEEcCCC--CEEEEEeCCCCCCCcCCEEEEECCCCE--------EEECcccCCcCC
Confidence 4789999998 8999985 9999997 234444322 23468999999998 888999999999
Q ss_pred CeEEEEEEEEECCCCCCCCCceEEEEEEEEEee
Q psy1887 387 RTLSFVIVAKEISSDSSSNLLSSQAPVLVYIND 419 (653)
Q Consensus 387 ~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~D 419 (653)
..|.|+|+|+|.| .+++++.+.|+|.|+|
T Consensus 72 ~~y~l~V~A~D~g----~p~l~~~~~v~I~V~D 100 (100)
T 3k6f_A 72 ATYQLYVETTDAS----GKTLEGPVPLEVIVID 100 (100)
T ss_dssp SEEEEEEEEECTT----CCEEEEEEEEEEEEEC
T ss_pred CEEEEEEEEEECC----CCcccceEEEEEEEEC
Confidence 9999999999988 6789999999999987
No 54
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Probab=99.44 E-value=1.4e-13 Score=117.93 Aligned_cols=88 Identities=19% Similarity=0.199 Sum_probs=74.0
Q ss_pred EEEEeCCCC--CCcEEEeeeceeeEEeeCCCCcceEEEEEEecC------CCcEEEcccceeeeeeEEEEEecCCCCCcc
Q psy1887 313 ITHLDENSP--QGTALIFAESFHTQVTDDNMGKNGIFSLTLENN------NGTFEIWPSVVERKAQFTIRVRNNKNLDYE 384 (653)
Q Consensus 313 ~~~v~En~~--~gt~v~~v~~~~~~a~D~D~g~n~~~~~~~~~~------~~~F~I~~~tg~~~~~~~i~l~~~~~LD~E 384 (653)
.++|+||.+ .|+.|+++ .| | .|.|++++|++.+. .+.|.|++.+|. |++.++||||
T Consensus 10 ~~~V~En~~~~~~~~v~~v-----~A-d--~g~N~~i~Ysi~~~~~~~~~~~~F~Id~~tG~--------I~~~~~LDrE 73 (105)
T 2omz_B 10 PISCPENEKGPFPKNLVQI-----KS-N--KDKEGKVFYSITGQGADTPPVGVFIIERETGW--------LKVTEPLDRE 73 (105)
T ss_dssp CCCEESSCCSSSSEEEEEC-----EE-G--GGGSSCCEEEEEEBTTTBSSTTSEEECTTTCE--------EEECSCCCTT
T ss_pred CEEEeCCCCCCCCcEEEEE-----EC-C--CCCCCeEEEEEeCCCCCCCccCEEEEeCCCCE--------EEECccCCcC
Confidence 368999999 57788874 77 3 36788888887432 358999999997 8889999999
Q ss_pred CCCeEEEEEEEEECCCCCCCCCceEEEEEEEEEeec
Q psy1887 385 RTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDV 420 (653)
Q Consensus 385 ~~~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~Dv 420 (653)
+++.|.|+|+|+|.| .+++++.+.|+|.|+|+
T Consensus 74 ~~~~y~l~V~A~D~g----~p~~~~~~~v~I~V~Dv 105 (105)
T 2omz_B 74 RIATYTLFSHAVSSN----GNAVEDPMEILITVTDQ 105 (105)
T ss_dssp TCCEEEEEEEEECTT----SCBSSCCEEEEEEEEC-
T ss_pred CCCeEEEEEEEEECC----CCceeeEEEEEEEEEeC
Confidence 999999999999998 67899999999999996
No 55
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}
Probab=99.41 E-value=6.9e-14 Score=119.42 Aligned_cols=93 Identities=26% Similarity=0.356 Sum_probs=75.8
Q ss_pred cceEEEeeCCCCCCcEEEEEEEeeCCCCCC--ceEEEEEEcCCCCcceEEeCCCCeEEEEcCccCCccCcc------EEE
Q psy1887 430 TLYTAKIPENATAGEKVVQVKATDVDTNLG--GEILYTAILGYKNSSLELDAHTGDITIANGQQFDREEAS------EYK 501 (653)
Q Consensus 430 ~~y~~~V~E~~~~gt~v~~v~a~D~D~g~n--~~i~y~i~~~~~~~~F~Id~~tG~i~~~~~~~lD~E~~~------~~~ 501 (653)
..|..+|+|++++|+.|++| |.|+|.+.+ ..++|+|.+++...+|.|++.||.|+++ ++||||+.. .|.
T Consensus 3 ~~~~~~V~E~~~~Gt~Vg~v-a~D~~~~~~~~~~~~y~i~~~~~~~~F~Id~~tG~i~~~--~~LDRE~~~~~~~~~~~~ 79 (103)
T 1wuz_A 3 SQIHYSIPEEAKHGTFVGRI-AQDLGLELTELVPRLFRVASKDRGDLLEVNLQNGILFVN--SRIDREELCGRSAECSIH 79 (103)
T ss_dssp CEEEEEEESSCCTTCBCCCH-HHHHTCCHHHHTTTTBCCBCSSCSCSEEEETTTTEEEEC--SCCSHHHHCSSSSSCEEE
T ss_pred eeEEEEEECCCCCCCEEEEE-EeccCCCCcccccEEEEEEeCCCccEEEEECCeEEEEEC--CcCccccccCCCCcEEEE
Confidence 45788999999999999999 999886422 3689999887777899999999999998 899999863 455
Q ss_pred EEEEEEECCCCCceEEEEEEEEEEecCCC
Q psy1887 502 FQVEARDMQGLGLRTVVPLQLTILDVNDN 530 (653)
Q Consensus 502 l~V~a~D~g~~~~~~~~~v~I~V~DvNDn 530 (653)
+.|.+ . .| + ..+.|.|+|+|+|||
T Consensus 80 ~~v~~--~-~p-~-~~~~v~I~V~DiNDN 103 (103)
T 1wuz_A 80 LEVIV--D-RP-L-QVFHVEVEVRDINDN 103 (103)
T ss_dssp EEEEE--T-TT-T-EEEEEEEEEECCSCC
T ss_pred EEEEE--C-CC-C-EEEEEEEEEEEcCCC
Confidence 55554 2 33 3 378999999999997
No 56
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}
Probab=99.16 E-value=9.7e-12 Score=106.01 Aligned_cols=93 Identities=19% Similarity=0.118 Sum_probs=69.1
Q ss_pred CceEEEEeCCCCCCcEEEeeeceeeEEeeCCCCcc--e--EEEEEEecCCCcEEEcccceeeeeeEEEEEecCCCCCccC
Q psy1887 310 VQYITHLDENSPQGTALIFAESFHTQVTDDNMGKN--G--IFSLTLENNNGTFEIWPSVVERKAQFTIRVRNNKNLDYER 385 (653)
Q Consensus 310 ~~~~~~v~En~~~gt~v~~v~~~~~~a~D~D~g~n--~--~~~~~~~~~~~~F~I~~~tg~~~~~~~i~l~~~~~LD~E~ 385 (653)
..+.++|+|+.++|+.|+. + |.|.|.+.+ . +|++..++..++|.|++.+|. |.+.++||||+
T Consensus 3 ~~~~~~V~E~~~~Gt~Vg~-----v-a~D~~~~~~~~~~~~y~i~~~~~~~~F~Id~~tG~--------i~~~~~LDRE~ 68 (103)
T 1wuz_A 3 SQIHYSIPEEAKHGTFVGR-----I-AQDLGLELTELVPRLFRVASKDRGDLLEVNLQNGI--------LFVNSRIDREE 68 (103)
T ss_dssp CEEEEEEESSCCTTCBCCC-----H-HHHHTCCHHHHTTTTBCCBCSSCSCSEEEETTTTE--------EEECSCCSHHH
T ss_pred eeEEEEEECCCCCCCEEEE-----E-EeccCCCCcccccEEEEEEeCCCccEEEEECCeEE--------EEECCcCcccc
Confidence 3577899999999999997 5 888876542 2 344433455679999999998 88889999998
Q ss_pred CC----eEEEEEEEEECCCCCCCCCceEEEEEEEEEeecCCC
Q psy1887 386 TR----TLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDN 423 (653)
Q Consensus 386 ~~----~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvNDn 423 (653)
.. .|.+.+++.... ++ ..+.|.|.|+|+|||
T Consensus 69 ~~~~~~~~~~~~~v~~~~------p~-~~~~v~I~V~DiNDN 103 (103)
T 1wuz_A 69 LCGRSAECSIHLEVIVDR------PL-QVFHVEVEVRDINDN 103 (103)
T ss_dssp HCSSSSSCEEEEEEEETT------TT-EEEEEEEEEECCSCC
T ss_pred ccCCCCcEEEEEEEEECC------CC-EEEEEEEEEEEcCCC
Confidence 63 344444444433 23 378999999999997
No 57
>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A
Probab=91.16 E-value=11 Score=37.56 Aligned_cols=150 Identities=13% Similarity=0.054 Sum_probs=72.4
Q ss_pred CCCCCeecCCceEEEEeCCCCCCcEEEeeeceeeEEeeCCCCcceEEEEEEecCC----CcE-----EEcccceeeeeeE
Q psy1887 301 INTPPYFDTVQYITHLDENSPQGTALIFAESFHTQVTDDNMGKNGIFSLTLENNN----GTF-----EIWPSVVERKAQF 371 (653)
Q Consensus 301 Nd~~P~f~~~~~~~~v~En~~~gt~v~~v~~~~~~a~D~D~g~n~~~~~~~~~~~----~~F-----~I~~~tg~~~~~~ 371 (653)
+|++..|....-...|.|+. |+.-..| . ...+......+.|...+.. .-| .+.-..|+....
T Consensus 6 dd~~g~i~F~~~~y~V~E~~--g~v~vtV-----~-R~g~~~~~vtV~y~T~~GTA~ag~Dy~~~~gtl~F~~Get~kt- 76 (298)
T 3rb5_A 6 ADDPIRMYFEPGHYTVMENC--GEFEVRV-----V-RRGDISTYASVEYETQDGTASAGTDFVGRKGLLSFPPGVDEQR- 76 (298)
T ss_dssp -----CEEESSSEEEEETTS--CCEECCE-----E-ECSCCSSCEEEEEEEEESSSCBTTTBCCCEEEEEECTTCCEEC-
T ss_pred CCCceEEEEeCCEEEEecCc--eEEEEEE-----E-EECCCCccEEEEEEeeCCccCCCCCccccceEEEECCCceEEE-
Confidence 45666666666667899986 5444332 2 2234444455666532110 112 222222332222
Q ss_pred EEEEecCCCCCccCCCeEEEEEEEEECCCCCCCCCceEEEEEEEEEeecCCCCCeecccceEEEeeCCCCCCcEEEEEEE
Q psy1887 372 TIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKA 451 (653)
Q Consensus 372 ~i~l~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~gt~v~~v~a 451 (653)
+.|....---+|....|.+.+.--..+ ..+......+|+|.| ||++|.|....-..+|.|+. |...++|.-
T Consensus 77 -i~V~I~dD~~~E~dEtF~v~Ls~p~~~-----a~lg~~~~atvtI~d-dD~~g~~~f~~~~~~V~E~~--g~~~~~V~R 147 (298)
T 3rb5_A 77 -FRIEVIDDDVFEEDECFYIRLFNPSEG-----VKLAVPMIATVMILD-DDHAGIFAFTDSVFEITESV--GRFELKVMR 147 (298)
T ss_dssp -CEECBCCCSSCCCCEEEEEEEECCCTT-----CCBCSCSEEEEEEEC-CCCCCEEECSCSEEEECTTC--CCEEEEEEE
T ss_pred -EEEEEeCCCCccCcEEEEEEEeCCCCC-----cEECCCceEEEEEec-cccccccccccccEEeecCC--ceEEEEEEE
Confidence 223333333356666665555432111 123333345666676 56789876655566789985 666666665
Q ss_pred eeCCCCCCceEEEEEEcC
Q psy1887 452 TDVDTNLGGEILYTAILG 469 (653)
Q Consensus 452 ~D~D~g~n~~i~y~i~~~ 469 (653)
+..-.+ .-.+.|+...|
T Consensus 148 s~~~~g-~vtV~~~T~dG 164 (298)
T 3rb5_A 148 YSGARG-TVIVPYWTEND 164 (298)
T ss_dssp ESCCCS-CEEEEEEEEEC
T ss_pred EecCCC-CEEEEEEecCC
Confidence 543322 34566765544
No 58
>3rb5_A Na/Ca exchange protein; CBD12, calcium binding and regulation, metal binding protein; 2.35A {Drosophila melanogaster} PDB: 3rb7_A 3e9u_A
Probab=88.48 E-value=8.3 Score=38.43 Aligned_cols=146 Identities=21% Similarity=0.202 Sum_probs=75.3
Q ss_pred CCCCCeecccceEEEeeCCCCCCcEEEEEEEeeCCCCCCceEEEEEEcCCCCc--ceEEeCCCCeEEEEcC--------c
Q psy1887 421 NDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNS--SLELDAHTGDITIANG--------Q 490 (653)
Q Consensus 421 NDn~P~f~~~~y~~~V~E~~~~gt~v~~v~a~D~D~g~n~~i~y~i~~~~~~~--~F~Id~~tG~i~~~~~--------~ 490 (653)
+|+++.|....-...|.|+. |+.-.+|.-+. +......+.|....|.... -|. +.+|.|..... .
T Consensus 6 dd~~g~i~F~~~~y~V~E~~--g~v~vtV~R~g-~~~~~vtV~y~T~~GTA~ag~Dy~--~~~gtl~F~~Get~kti~V~ 80 (298)
T 3rb5_A 6 ADDPIRMYFEPGHYTVMENC--GEFEVRVVRRG-DISTYASVEYETQDGTASAGTDFV--GRKGLLSFPPGVDEQRFRIE 80 (298)
T ss_dssp -----CEEESSSEEEEETTS--CCEECCEEECS-CCSSCEEEEEEEEESSSCBTTTBC--CCEEEEEECTTCCEECCEEC
T ss_pred CCCceEEEEeCCEEEEecCc--eEEEEEEEEEC-CCCccEEEEEEeeCCccCCCCCcc--ccceEEEECCCceEEEEEEE
Confidence 45566665555566799985 56666665544 4434567888877664322 221 22333333211 1
Q ss_pred cCC---ccCccEEEEEEEEEEC-CCCCceEEEEEEEEEEecCCCCCeEeecCcEEEEecCCCCCeEEEEEEEEeCCCCCC
Q psy1887 491 QFD---REEASEYKFQVEARDM-QGLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFSERTFIKATDQDAEAP 566 (653)
Q Consensus 491 ~lD---~E~~~~~~l~V~a~D~-g~~~~~~~~~v~I~V~DvNDn~P~f~~~~y~~~v~e~~~~g~~v~~v~A~D~D~~~~ 566 (653)
-+| +|....|.|.+ +.. ++..+......+|+|.| ||++|.|.-..-...+.|+. |.....|.-+-.-. .
T Consensus 81 I~dD~~~E~dEtF~v~L--s~p~~~a~lg~~~~atvtI~d-dD~~g~~~f~~~~~~V~E~~--g~~~~~V~Rs~~~~--g 153 (298)
T 3rb5_A 81 VIDDDVFEEDECFYIRL--FNPSEGVKLAVPMIATVMILD-DDHAGIFAFTDSVFEITESV--GRFELKVMRYSGAR--G 153 (298)
T ss_dssp BCCCSSCCCCEEEEEEE--ECCCTTCCBCSCSEEEEEEEC-CCCCCEEECSCSEEEECTTC--CCEEEEEEEESCCC--S
T ss_pred EeCCCCccCcEEEEEEE--eCCCCCcEECCCceEEEEEec-cccccccccccccEEeecCC--ceEEEEEEEEecCC--C
Confidence 122 34444555444 442 12223333345666676 57889876655467888985 55556665443322 2
Q ss_pred CCeEEEEEEeCC
Q psy1887 567 NNIVRYEIISGN 578 (653)
Q Consensus 567 n~~i~Y~i~~~~ 578 (653)
.-.+.|+...|.
T Consensus 154 ~vtV~~~T~dGT 165 (298)
T 3rb5_A 154 TVIVPYWTENDT 165 (298)
T ss_dssp CEEEEEEEEEC-
T ss_pred CEEEEEEecCCc
Confidence 346788876664
No 59
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A
Probab=86.75 E-value=19 Score=33.10 Aligned_cols=116 Identities=12% Similarity=0.048 Sum_probs=64.7
Q ss_pred CCeEEEEEEEEECCCCCCCCCceE-EEEEEEEEeecCCCCCeecccceEEEeeCCCC---CC-cEEEEEEEeeCCCCCCc
Q psy1887 386 TRTLSFVIVAKEISSDSSSNLLSS-QAPVLVYINDVNDNPPVFTATLYTAKIPENAT---AG-EKVVQVKATDVDTNLGG 460 (653)
Q Consensus 386 ~~~~~l~V~a~D~~~~~~~~~~s~-~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~---~g-t~v~~v~a~D~D~g~n~ 460 (653)
...|.|+++|+|.. +..+ ...+.|.|.+ ..+|... +.-+.+.. .| .+-+...|+|.|.+ =.
T Consensus 60 ~G~htlta~A~D~a------Gn~s~s~~v~vtV~~--~~~Ptv~-----itsP~~g~~~~~~~~vtl~~~AsD~~g~-V~ 125 (190)
T 3pdd_A 60 VGAYNLKAVAVLSD------GRRIESPVTPVLVKV--IVKPTVK-----LTAPKSNVVAYGNEFLKITATASDSDGK-IS 125 (190)
T ss_dssp SEEEEEEEEEEETT------SCEEECCCEEEEEEC--CCCCEEE-----EEECCTTCCCBTTSEEEEEEEEECSSSC-EE
T ss_pred CccEEEEEEEEECC------CCEeeecceeEEecc--CCCCcee-----ecCCCCCcEEecCCeEEEEEEEECCCCc-EE
Confidence 45799999999976 3333 3457787776 3477642 33333322 23 44566777876631 23
Q ss_pred eEEEEEEcCCCCcceEEeCCCCeEEEEcCccCCccCccEEEEEEEEEECCCCCceEEEEEEEEEEe
Q psy1887 461 EILYTAILGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILD 526 (653)
Q Consensus 461 ~i~y~i~~~~~~~~F~Id~~tG~i~~~~~~~lD~E~~~~~~l~V~a~D~g~~~~~~~~~v~I~V~D 526 (653)
++.|.+ .| ....-+. ++-.... ... ..+.|.|+++|+|..+.. +....|.|+|.+
T Consensus 126 ~Ve~~~-dg---~~v~t~t-~~~y~~~--~~~---~~G~~tl~a~A~D~aGn~-s~s~~vtvtv~~ 180 (190)
T 3pdd_A 126 RVDFLV-DG---EVIGSDR-EAPYEYE--WKA---VEGNHEISVIAYDDDDAA-STPDSVKIFVKQ 180 (190)
T ss_dssp EEEEEE-TT---EEEEEEC-SSSEEEE--EEC---CSEEEEEEEEEEETTCCB-CCCEEEEEEEBC
T ss_pred EEEEEE-CC---EEEeccc-CCCEEEE--Eec---CCeeEEEEEEEEECCCCE-EecceEEEEECC
Confidence 455553 22 1222222 2222222 111 568999999999976543 345567777764
No 60
>3pdd_A Glycoside hydrolase, family 9; CBHA, beta-sandwich, cellulosome, unknown function; 1.72A {Clostridium thermocellum} PDB: 3pdg_A
Probab=86.01 E-value=20 Score=32.95 Aligned_cols=118 Identities=8% Similarity=0.074 Sum_probs=59.4
Q ss_pred CCcEEEEEEEEEecccCCCCCCCeEEEEEEEEEEccCCCCCeecCCceEEEEeCCCC---CCcEEEeeeceeeEEeeCCC
Q psy1887 265 GQPVILMVLAEEERKDLNEPSPQSSTATIALVFDQAINTPPYFDTVQYITHLDENSP---QGTALIFAESFHTQVTDDNM 341 (653)
Q Consensus 265 ~~~~~l~V~A~d~~~d~~~~~~~s~~~~v~i~V~dvNd~~P~f~~~~~~~~v~En~~---~gt~v~~v~~~~~~a~D~D~ 341 (653)
.+.+.|+++|+| ..|. .+....+.|.|.+ ..+|... +.-+.+.. .|..+.. ...|.|.|.
T Consensus 60 ~G~htlta~A~D----~aGn--~s~s~~v~vtV~~--~~~Ptv~-----itsP~~g~~~~~~~~vtl----~~~AsD~~g 122 (190)
T 3pdd_A 60 VGAYNLKAVAVL----SDGR--RIESPVTPVLVKV--IVKPTVK-----LTAPKSNVVAYGNEFLKI----TATASDSDG 122 (190)
T ss_dssp SEEEEEEEEEEE----TTSC--EEECCCEEEEEEC--CCCCEEE-----EEECCTTCCCBTTSEEEE----EEEEECSSS
T ss_pred CccEEEEEEEEE----CCCC--EeeecceeEEecc--CCCCcee-----ecCCCCCcEEecCCeEEE----EEEEECCCC
Confidence 456778889988 2222 2222346677665 5677643 33444322 3544432 246776653
Q ss_pred CcceEEEEEEecCCCcEEEcccceeeeeeEEEEEecCCCCCccCCCeEEEEEEEEECCCCCCCCCceEEEEEEEEEee
Q psy1887 342 GKNGIFSLTLENNNGTFEIWPSVVERKAQFTIRVRNNKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYIND 419 (653)
Q Consensus 342 g~n~~~~~~~~~~~~~F~I~~~tg~~~~~~~i~l~~~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~D 419 (653)
.-.++.|.+.+. ...-+ + ...|...... ....|.|+++|+|.. + ..+....|+|.|.+
T Consensus 123 -~V~~Ve~~~dg~--~v~t~--t---~~~y~~~~~~-------~~G~~tl~a~A~D~a---G--n~s~s~~vtvtv~~ 180 (190)
T 3pdd_A 123 -KISRVDFLVDGE--VIGSD--R---EAPYEYEWKA-------VEGNHEISVIAYDDD---D--AASTPDSVKIFVKQ 180 (190)
T ss_dssp -CEEEEEEEETTE--EEEEE--C---SSSEEEEEEC-------CSEEEEEEEEEEETT---C--CBCCCEEEEEEEBC
T ss_pred -cEEEEEEEECCE--EEecc--c---CCCEEEEEec-------CCeeEEEEEEEEECC---C--CEEecceEEEEECC
Confidence 233455544221 11111 1 1112221211 456799999999987 1 23345667777654
No 61
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Probab=84.15 E-value=4.7 Score=42.20 Aligned_cols=94 Identities=15% Similarity=0.199 Sum_probs=57.6
Q ss_pred ecCCCCCeecccce------EEEeeCCCCCCcEEEEEEE---eeCCCCCCceEEEEEEc--CC--CCcceEEe-CCCCeE
Q psy1887 419 DVNDNPPVFTATLY------TAKIPENATAGEKVVQVKA---TDVDTNLGGEILYTAIL--GY--KNSSLELD-AHTGDI 484 (653)
Q Consensus 419 DvNDn~P~f~~~~y------~~~V~E~~~~gt~v~~v~a---~D~D~g~n~~i~y~i~~--~~--~~~~F~Id-~~tG~i 484 (653)
..| ++|+.....- ..++.+ |..| ++.| +|+| ++.++|+=.. +. ......|. .....+
T Consensus 329 ~aN-haPVa~iag~~g~~p~~~~v~a----G~tV-tLdAs~SsDPD---GD~LtY~W~q~~g~g~~~~~vtls~~~~~~~ 399 (437)
T 2yhg_A 329 AAN-HHPVPVVNNDANEAVMYLNASA----GSTV-SLDASGSSDPD---GDSLNYSWSHYGEADSYSGSVSISNSSSASA 399 (437)
T ss_dssp GSC-CCCBCCBTTBCCSSCEEEEECT----TCEE-EEECTTCBCTT---CCCEEEEEEECTTTSSCCSCCCEETTTSSEE
T ss_pred cCC-CCCEEEecCCCcccccceEecC----CCEE-EEEeeeeeCCC---CCeEEEEEEEeCCCCccccceEeecCCCceE
Confidence 355 4887763221 344543 3333 4444 4887 4667776432 22 11245664 344566
Q ss_pred EEEcCccCCccCccEEEEEEEEEECCCCCceEEEEEEEEE
Q psy1887 485 TIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTI 524 (653)
Q Consensus 485 ~~~~~~~lD~E~~~~~~l~V~a~D~g~~~~~~~~~v~I~V 524 (653)
.+. .+-+ +....|.|.++++|.+.|++++...|.|+|
T Consensus 400 sft--~P~~-~~~~tl~f~LtVTD~~~p~lTs~~rViVtV 436 (437)
T 2yhg_A 400 NVQ--IPSN-AGGKDIHILLTLRDNGSPNLYAYRRVVINV 436 (437)
T ss_dssp EEE--CCTT-CTTCEEEEEEEEEECSSSCCEEEEEEEEEE
T ss_pred EEE--eCCC-CCCcEEEEEEEEEeCCCCCccEEeEEEEEe
Confidence 665 3322 467899999999999989999999998887
No 62
>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1
Probab=81.54 E-value=8 Score=34.50 Aligned_cols=79 Identities=19% Similarity=0.396 Sum_probs=58.2
Q ss_pred CCCeecccceEEEeeCCCCCCcEEEEEEEeeCCCCCCceEEEEEEcCCCCcceEEeCCCCeEEEEcCccCCccCccEEEE
Q psy1887 423 NPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQFDREEASEYKF 502 (653)
Q Consensus 423 n~P~f~~~~y~~~V~E~~~~gt~v~~v~a~D~D~g~n~~i~y~i~~~~~~~~F~Id~~tG~i~~~~~~~lD~E~~~~~~l 502 (653)
+-|-|.+..|...++-....|..+++|.-.|... +..+.|. +.+ ...|.|+. .|.|++. +.+-.-. ..-.+
T Consensus 32 C~pGF~~~~~~~~vp~~l~~g~~lgkV~F~dC~g--~~~~~~~--ssD-p~dFkV~~-DGtVya~--r~v~L~~-~~~~F 102 (159)
T 1op4_A 32 CKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNR--KRKVQYE--SSE-PADFKVDE-DGTVYAV--RSFPLTA-EQAKF 102 (159)
T ss_dssp CCCBCCSCEEEECCCCSSCSSCCEEECCCBCCSS--CCCEEEE--CCC-SSEEEEET-TTEEEEE--SCCSCSS-SCEEE
T ss_pred ccCCcCcceeEEeccccccCCceeceeecccCCC--CCceeEE--cCC-CCCeEEeC-CCcEEEe--cceeecC-CCcEE
Confidence 4689999999777888888999999999999873 4667776 222 22799985 8999988 4443222 23378
Q ss_pred EEEEEECC
Q psy1887 503 QVEARDMQ 510 (653)
Q Consensus 503 ~V~a~D~g 510 (653)
.|.|.|..
T Consensus 103 ~V~a~D~~ 110 (159)
T 1op4_A 103 LIYAQDKE 110 (159)
T ss_dssp EEEEEETT
T ss_pred EEEEEcCC
Confidence 89999953
No 63
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Probab=74.20 E-value=26 Score=36.64 Aligned_cols=31 Identities=10% Similarity=0.213 Sum_probs=26.7
Q ss_pred cCCCeEEEEEEEEECCCCCCCCCceEEEEEEEEEe
Q psy1887 384 ERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYIN 418 (653)
Q Consensus 384 E~~~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~ 418 (653)
+....|+|.+.++|.+ .|++++...|+|+|.
T Consensus 407 ~~~~tl~f~LtVTD~~----~p~lTs~~rViVtV~ 437 (437)
T 2yhg_A 407 AGGKDIHILLTLRDNG----SPNLYAYRRVVINVQ 437 (437)
T ss_dssp CTTCEEEEEEEEEECS----SSCCEEEEEEEEEEC
T ss_pred CCCcEEEEEEEEEeCC----CCCccEEeEEEEEeC
Confidence 4678899999999988 678999999999873
No 64
>1op4_A Neural-cadherin; beta sandwich, cadherin-like domain, cell adhesion; NMR {Mus musculus} SCOP: b.1.6.1
Probab=73.74 E-value=9.3 Score=34.07 Aligned_cols=81 Identities=16% Similarity=0.296 Sum_probs=62.7
Q ss_pred CCCceeccccCeEEEEeecCCCCceEEEEEEEecCCCCcceEEEecCCCceEEEEeeccCCCCCCeeEEEEEEcccc-CC
Q psy1887 101 ANYPVFDISTQMRSLLIPASVKLGTIIYRLRASDSDKDYPLTFDATDFGSYVVKIKSLPCSKNSSFCEANVYLDRVL-VP 179 (653)
Q Consensus 101 d~~P~f~~~~~~~~~~v~E~~~~gt~i~~v~a~D~D~~~~~~y~i~~~~~~~f~i~~~~~~~~~~~~~g~i~l~~~l-e~ 179 (653)
-+.|.|....| ...++-+...|..+++|.-.|=.....+.|..++. ..|.|.. .|.++..+++ ..
T Consensus 31 ~C~pGF~~~~~--~~~vp~~l~~g~~lgkV~F~dC~g~~~~~~~ssDp--~dFkV~~----------DGtVya~r~v~L~ 96 (159)
T 1op4_A 31 LCKTGFPEDVY--SAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEP--ADFKVDE----------DGTVYAVRSFPLT 96 (159)
T ss_dssp CCCCBCCSCEE--EECCCCSSCSSCCEEECCCBCCSSCCCEEEECCCS--SEEEEET----------TTEEEEESCCSCS
T ss_pred cccCCcCccee--EEeccccccCCceeceeecccCCCCCceeEEcCCC--CCeEEeC----------CCcEEEecceeec
Confidence 37799988875 88899999999999999999988777777876443 2577765 4889999997 33
Q ss_pred CceEEEEEEEEECCCC
Q psy1887 180 GQVFQFRIIVKDTRGD 195 (653)
Q Consensus 180 ~~~~~~~v~v~d~~g~ 195 (653)
...-.|.|.|.|..+.
T Consensus 97 ~~~~~F~V~a~D~~t~ 112 (159)
T 1op4_A 97 AEQAKFLIYAQDKETQ 112 (159)
T ss_dssp SSCEEEEEEEEETTTT
T ss_pred CCCcEEEEEEEcCCCc
Confidence 4445888999996544
No 65
>3ead_A Na/Ca exchange protein; CBD1, calcium regulation, membrane, transmembrane, membrane; 2.25A {Drosophila melanogaster} SCOP: b.1.27.0
Probab=66.99 E-value=28 Score=30.05 Aligned_cols=47 Identities=23% Similarity=0.182 Sum_probs=26.0
Q ss_pred CCCCeecccceEEEeeCCCCCCcEEEEEEEeeCCCCCCceEEEEEEcCCC
Q psy1887 422 DNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYK 471 (653)
Q Consensus 422 Dn~P~f~~~~y~~~V~E~~~~gt~v~~v~a~D~D~g~n~~i~y~i~~~~~ 471 (653)
|+.+.+....-...|.|+. |+.-.+|...- +......+.|+...|..
T Consensus 2 d~~~~i~F~~~~y~V~E~~--g~~~v~V~R~g-~~~~~v~V~y~t~~gTA 48 (137)
T 3ead_A 2 DDPIRMYFEPGHYTVMENC--GEFEVRVVRRG-DISTYASVEYETQDGTA 48 (137)
T ss_dssp ---CEEEESSCEEEEEGGG--CEEEEEEEEES-CCSSCEEEEEEEECSSS
T ss_pred CCCEEEEEcCCEEEEECCC--eEEEEEEEEEC-CCCceEEEEEEeECCCc
Confidence 3445444444455688875 56666665543 33345678888776644
No 66
>3ead_A Na/Ca exchange protein; CBD1, calcium regulation, membrane, transmembrane, membrane; 2.25A {Drosophila melanogaster} SCOP: b.1.27.0
Probab=63.34 E-value=43 Score=28.85 Aligned_cols=47 Identities=15% Similarity=0.221 Sum_probs=11.1
Q ss_pred EEEEEEEEC-CCCCee--eeEEEEEEecCCCCCCCCCCCCeEEEEeCCCcEE
Q psy1887 184 QFRIIVKDT-RGDTTT--VPTSLTATDAALNINAQFPHIPGVIVVPEVLGTY 232 (653)
Q Consensus 184 ~~~v~v~d~-~g~~~~--~~~~i~v~~~~~~~~p~~~~~~~~~~i~e~~G~i 232 (653)
.|.|..... .|.... ..++++| .+.+.++.|.-....+.+.|+.|.+
T Consensus 87 ~F~v~L~~p~~~a~lg~~~~atvtI--~ddD~~g~~~f~~~~~~V~E~~G~~ 136 (137)
T 3ead_A 87 CFYIRLFNPSEGVKLAVPMIATVMI--LDDDHAGIFAFTDSVFEITESVGRF 136 (137)
T ss_dssp EEEEEEECCCTTCEECSCSEEEEEE--ECCC---------------------
T ss_pred EEEEEEECCCCCcEECCCcEEEEEE--ECCCCCCEEEECCCcEEEeccccEE
Confidence 444555554 233222 2344444 4446777776666677888888765
No 67
>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.99 E-value=29 Score=28.24 Aligned_cols=31 Identities=13% Similarity=0.384 Sum_probs=26.4
Q ss_pred CccEEEEEEEEEECCCCCceEEEEEEEEEEecC
Q psy1887 496 EASEYKFQVEARDMQGLGLRTVVPLQLTILDVN 528 (653)
Q Consensus 496 ~~~~~~l~V~a~D~g~~~~~~~~~v~I~V~DvN 528 (653)
....|.|++.++|.. +++++..+.|+|...+
T Consensus 67 ~~G~y~f~LTVtD~~--G~s~s~~v~VtV~~~~ 97 (102)
T 2yrl_A 67 QVGTYVFTLTVKDER--NLQSQSSVNVIVKEES 97 (102)
T ss_dssp CSSEEEEEEEEEBTT--CCEEEEEEEEEEECCS
T ss_pred CCeEEEEEEEEEeCC--CCEEEeEEEEEEcCCC
Confidence 468999999999954 5788899999999876
No 68
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum}
Probab=55.42 E-value=81 Score=25.43 Aligned_cols=72 Identities=14% Similarity=0.081 Sum_probs=42.6
Q ss_pred ceEEEEEEEecCCCC-cceEEEecCCCceEEEEeeccCCCCCCeeEEEEEEccccCCCceEEEEEEEEECCCCCe-eeeE
Q psy1887 124 GTIIYRLRASDSDKD-YPLTFDATDFGSYVVKIKSLPCSKNSSFCEANVYLDRVLVPGQVFQFRIIVKDTRGDTT-TVPT 201 (653)
Q Consensus 124 gt~i~~v~a~D~D~~-~~~~y~i~~~~~~~f~i~~~~~~~~~~~~~g~i~l~~~le~~~~~~~~v~v~d~~g~~~-~~~~ 201 (653)
+.+.....|+|.|.+ ..+.|.+++. .+..+. ..+++ ... .. ....|.|.++|+|..|... ...+
T Consensus 17 ~~v~i~a~A~D~dg~V~kVef~vdg~---~vg~dt--~apy~------~~w-~~--~~G~htl~a~AtD~~G~~~tS~~v 82 (98)
T 3pe9_A 17 EFLKITATASDSDGKISRVDFLVDGE---VIGSDR--EAPYE------YEW-KA--VEGNHEISVIAYDDDDAASTPDSV 82 (98)
T ss_dssp SEEEEEEEECCSSSCEEEEEEEETTE---EEEEEC--SSSEE------EEE-EC--CSEEEEEEEEEEETTCCBCCCEEE
T ss_pred CEEEEEEEEEeCCCCEEEEEEEECCE---Eecccc--cCCEE------EEE-Ec--CCccEEEEEEEEECCCCEEeeeEE
Confidence 445678888888863 5778877431 111111 11111 111 11 1568999999999999864 5566
Q ss_pred EEEEEecC
Q psy1887 202 SLTATDAA 209 (653)
Q Consensus 202 ~i~v~~~~ 209 (653)
.|+|.+..
T Consensus 83 ~vtV~~~~ 90 (98)
T 3pe9_A 83 KIFVKQAR 90 (98)
T ss_dssp EEEEECCC
T ss_pred EEEECchh
Confidence 77766544
No 69
>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.14 E-value=29 Score=28.28 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=27.4
Q ss_pred CCCeEEEEEEEEECCCCCCCCCceEEEEEEEEEeecCC
Q psy1887 385 RTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVND 422 (653)
Q Consensus 385 ~~~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvND 422 (653)
....|.|++.++|.. +.++...++|.|...+.
T Consensus 67 ~~G~y~f~LTVtD~~------G~s~s~~v~VtV~~~~~ 98 (102)
T 2yrl_A 67 QVGTYVFTLTVKDER------NLQSQSSVNVIVKEESG 98 (102)
T ss_dssp CSSEEEEEEEEEBTT------CCEEEEEEEEEEECCSS
T ss_pred CCeEEEEEEEEEeCC------CCEEEeEEEEEEcCCCC
Confidence 456899999999987 68899999999997765
No 70
>3us9_A Sodium/calcium exchanger 1; beta-sandwich, calcium binding protein, intracellular, metal protein; 2.68A {Canis lupus familiaris} PDB: 2klt_A
Probab=47.28 E-value=2.2e+02 Score=27.99 Aligned_cols=142 Identities=21% Similarity=0.198 Sum_probs=74.6
Q ss_pred eecccceEEEeeCCCCCCcEEEEEEEeeCCCCCCceEEEEEEcCCCCc--ceEEeCCCCeEEEEcC--------ccCC--
Q psy1887 426 VFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNS--SLELDAHTGDITIANG--------QQFD-- 493 (653)
Q Consensus 426 ~f~~~~y~~~V~E~~~~gt~v~~v~a~D~D~g~n~~i~y~i~~~~~~~--~F~Id~~tG~i~~~~~--------~~lD-- 493 (653)
.|.+..| .|.|+. |+.-.+|.-+..+.+..-.+.|+...|.+.. -|. +.+|.|..... .-+|
T Consensus 13 ~f~~~~y--~V~E~~--G~v~vtV~R~gG~~~~~v~V~y~T~dGTA~~g~Dy~--~~~gtl~F~~Get~kti~V~IidD~ 86 (295)
T 3us9_A 13 FFEQGTY--QCLENC--GTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYE--FTEGTVVFKPGETQKEIRVGIIDDD 86 (295)
T ss_dssp EESCSEE--EEEGGG--SCEEEEEEEEESSCCSCEEEEEEEEESSSCBTTTBC--CCCEEEEECSSCCEEEEEECCCCCS
T ss_pred EecCCeE--EEecCc--eEEEEEEEEecCCCCceEEEEEEeeCCcccCCcCcc--ccceEEEECCCceEEEEEEEEeCCC
Confidence 3555544 488885 6777777776655444567889877664321 121 12333332211 1222
Q ss_pred -ccCccEEEEEEEEEEC---C-------------CCCceEEEEEEEEEEecCCCCCeEeecCcEEEEecCCCCCeEEEEE
Q psy1887 494 -REEASEYKFQVEARDM---Q-------------GLGLRTVVPLQLTILDVNDNAPIFVQTPFEFVLASDSRNFSERTFI 556 (653)
Q Consensus 494 -~E~~~~~~l~V~a~D~---g-------------~~~~~~~~~v~I~V~DvNDn~P~f~~~~y~~~v~e~~~~g~~v~~v 556 (653)
+|....|.+.+.---. + ...+......+|+|.|- |++|.|.-..-...+.|+. |.....|
T Consensus 87 ~~E~~EtF~v~Ls~~~~~~~~~~d~~~~~~~~~~~a~Lg~~~~atVtI~Dd-D~agv~sf~~~~~~V~E~~--G~~~v~V 163 (295)
T 3us9_A 87 IFEEDKNFLVHLSNVKVSSEASEDGILEANHVSALACLGSPSTATVTIFDD-DHAGIFTFEEPVTHVSESI--GIMEVKV 163 (295)
T ss_dssp SCCCCEEEEEEEECCCCCCCC-------------CCCCCSCCEEEEEEECC-CCCCEEEESCSEEEEESCS--SEEEEEE
T ss_pred cccCceEEEEEEecCccccccccccccccccCCcccccCCCceeEEEEccc-ccccccccCCCeEEEecCC--CeEEEEE
Confidence 3444555555443110 0 11122223456666764 7899876555467888974 5555555
Q ss_pred EEEeCCCCCCCCeEEEEEEeCC
Q psy1887 557 KATDQDAEAPNNIVRYEIISGN 578 (653)
Q Consensus 557 ~A~D~D~~~~n~~i~Y~i~~~~ 578 (653)
.-+-. .. ..-.+.|....|.
T Consensus 164 ~Rs~~-~~-g~VtV~y~T~~GT 183 (295)
T 3us9_A 164 LRTSG-AR-GNVIVPYKTIEGT 183 (295)
T ss_dssp EEESC-CC-SCEEEEEEEECCS
T ss_pred EEEcC-CC-ccEEEEEEecCCC
Confidence 44422 11 2346778877664
No 71
>2kpn_A Bacillolysin; solution structure, BIG_3 domain, PF07523, PSI BIG-open NESG, cell WALL, hydrolase, peptidoglycan-anchor; NMR {Bacillus cereus atcc 14579}
Probab=43.66 E-value=59 Score=26.55 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=31.9
Q ss_pred ccCCccCccEEEEEEEEEECCCCCceEEEEEEEEEEecCCCCC
Q psy1887 490 QQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILDVNDNAP 532 (653)
Q Consensus 490 ~~lD~E~~~~~~l~V~a~D~g~~~~~~~~~v~I~V~DvNDn~P 532 (653)
...|....+.|.++..++|.. +..++++.+|+|.+..+..|
T Consensus 51 g~Vdt~k~G~Y~VtY~VtDs~--Gn~~t~trtVtV~~~~e~~~ 91 (103)
T 2kpn_A 51 GEVDTTKAGTYVLTYTVTDSK--GHEVTAKQTVTVKVREEVKN 91 (103)
T ss_dssp SCCCSSSCEEEEEEEEEECTT--SCEEEEEEEEEEECSSCCCC
T ss_pred CcccCCCceEEEEEEEEEcCC--CCEEEEEEEEEEeCCCcccC
Confidence 557877889999999999964 46677888888887665443
No 72
>3gin_A Sodium/calcium exchanger 1; CBD1, CBD2, NCX, calcium binding domain 1, antiport, calcium transport, calmodulin-binding, cell membrane; 2.40A {Canis lupus familiaris} PDB: 2dpk_A* 2fws_A
Probab=42.42 E-value=90 Score=27.67 Aligned_cols=72 Identities=15% Similarity=0.066 Sum_probs=35.7
Q ss_pred EEEEEEEeecCCCCCeecccceEEEeeCCCCCCcEEEEEEEeeCCCCCCceEEEEEEcCCCCc--ceEEeCCCCeEEEE
Q psy1887 411 APVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGYKNS--SLELDAHTGDITIA 487 (653)
Q Consensus 411 ~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~gt~v~~v~a~D~D~g~n~~i~y~i~~~~~~~--~F~Id~~tG~i~~~ 487 (653)
+.+.+.|.|-+ ..+.|....-..+|.|+. |+.-++|.-+..+.+....+.|+...|.... -|. +..|.|...
T Consensus 10 ~~~~~~i~ddd-~~g~i~F~~~~y~V~E~~--G~v~vtV~R~~G~~~~~v~V~y~T~dGTA~~g~Dy~--~~~gtl~F~ 83 (160)
T 3gin_A 10 AALEVLFQGPG-PVSKIFFEQGTYQCLENC--GTVALTIIRRGGDLTNTVFVDFRTEDGTANAGSDYE--FTEGTVVFK 83 (160)
T ss_dssp ------------CEEEEEESCSEEEEETTS--SEEEEEEEEESSCTTSCEEEEEEEEESSSCBTTTBC--CCEEEEEEC
T ss_pred ceEEEEEecCC-CccEEEEeCCEEEEEcCc--EEEEEEEEEccCCCCcEEEEEEEEECCcccCCCCcc--ccceEEEEc
Confidence 45666777643 355554444455688985 6666666666555444567889877765432 232 235666543
No 73
>2y72_A Collagenase, collagenase G; polycystic kidney disease domain, beta barrel, collagen RECO domain, hydrolase; 1.18A {Clostridium histolyticum} PDB: 3jqu_A 3js7_A
Probab=39.73 E-value=43 Score=26.05 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=23.8
Q ss_pred CCCceEEEEEEEEECCCCCeeeeEEEEEE
Q psy1887 178 VPGQVFQFRIIVKDTRGDTTTVPTSLTAT 206 (653)
Q Consensus 178 e~~~~~~~~v~v~d~~g~~~~~~~~i~v~ 206 (653)
.....|.++|+|.|..|........|+|.
T Consensus 56 ~~~G~Y~v~LtVtd~~G~~~t~~~~V~V~ 84 (85)
T 2y72_A 56 KKAGTYNVTLKVTDDKGATATESFTIEIK 84 (85)
T ss_dssp SSCEEEEEEEEEEETTSCEEEEEEEEEEE
T ss_pred CCCeEEEEEEEEEECCCCEEEEEEEEEEc
Confidence 45678999999999999887777777765
No 74
>2y72_A Collagenase, collagenase G; polycystic kidney disease domain, beta barrel, collagen RECO domain, hydrolase; 1.18A {Clostridium histolyticum} PDB: 3jqu_A 3js7_A
Probab=36.02 E-value=63 Score=25.02 Aligned_cols=31 Identities=10% Similarity=0.176 Sum_probs=24.8
Q ss_pred CccCCCeEEEEEEEEECCCCCCCCCceEEEEEEEEEe
Q psy1887 382 DYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYIN 418 (653)
Q Consensus 382 D~E~~~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~ 418 (653)
-|.+...|.+++.++|.. +.+.+..++|.|.
T Consensus 54 ty~~~G~Y~v~LtVtd~~------G~~~t~~~~V~V~ 84 (85)
T 2y72_A 54 AYKKAGTYNVTLKVTDDK------GATATESFTIEIK 84 (85)
T ss_dssp ECSSCEEEEEEEEEEETT------SCEEEEEEEEEEE
T ss_pred EcCCCeEEEEEEEEEECC------CCEEEEEEEEEEc
Confidence 356778899999999976 5777788888775
No 75
>2kpn_A Bacillolysin; solution structure, BIG_3 domain, PF07523, PSI BIG-open NESG, cell WALL, hydrolase, peptidoglycan-anchor; NMR {Bacillus cereus atcc 14579}
Probab=35.83 E-value=69 Score=26.15 Aligned_cols=42 Identities=10% Similarity=0.043 Sum_probs=33.6
Q ss_pred CCCCCccCCCeEEEEEEEEECCCCCCCCCceEEEEEEEEEeecCCCCC
Q psy1887 378 NKNLDYERTRTLSFVIVAKEISSDSSSNLLSSQAPVLVYINDVNDNPP 425 (653)
Q Consensus 378 ~~~LD~E~~~~~~l~V~a~D~~~~~~~~~~s~~~~v~I~V~DvNDn~P 425 (653)
....|..+...|.++..++|.. +..+++..+|.|.+..+..|
T Consensus 50 ~g~Vdt~k~G~Y~VtY~VtDs~------Gn~~t~trtVtV~~~~e~~~ 91 (103)
T 2kpn_A 50 DGEVDTTKAGTYVLTYTVTDSK------GHEVTAKQTVTVKVREEVKN 91 (103)
T ss_dssp ESCCCSSSCEEEEEEEEEECTT------SCEEEEEEEEEEECSSCCCC
T ss_pred eCcccCCCceEEEEEEEEEcCC------CCEEEEEEEEEEeCCCcccC
Confidence 3567777788899999999977 67788889999988766443
No 76
>3us9_A Sodium/calcium exchanger 1; beta-sandwich, calcium binding protein, intracellular, metal protein; 2.68A {Canis lupus familiaris} PDB: 2klt_A
Probab=35.54 E-value=3.3e+02 Score=26.67 Aligned_cols=56 Identities=25% Similarity=0.226 Sum_probs=33.1
Q ss_pred EEEEEEEeecCCCCCeecccceEEEeeCCCCCCcEEEEEEEeeCCCCCCceEEEEEEcCC
Q psy1887 411 APVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDTNLGGEILYTAILGY 470 (653)
Q Consensus 411 ~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~gt~v~~v~a~D~D~g~n~~i~y~i~~~~ 470 (653)
...+|+|.| ||++|.|....-..+|.|+. |....+|.-+-.- ...-.+.|....|.
T Consensus 128 ~~atVtI~D-dD~agv~sf~~~~~~V~E~~--G~~~v~V~Rs~~~-~g~VtV~y~T~~GT 183 (295)
T 3us9_A 128 STATVTIFD-DDHAGIFTFEEPVTHVSESI--GIMEVKVLRTSGA-RGNVIVPYKTIEGT 183 (295)
T ss_dssp CEEEEEEEC-CCCCCEEEESCSEEEEESCS--SEEEEEEEEESCC-CSCEEEEEEEECCS
T ss_pred ceeEEEEcc-cccccccccCCCeEEEecCC--CeEEEEEEEEcCC-CccEEEEEEecCCC
Confidence 445666666 47788865554466789984 6666666554332 22345667655543
No 77
>1u2c_A Dystroglycan; IG-like domain, S6 like fold, protein binding; 2.30A {Mus musculus} SCOP: b.1.6.2 d.272.1.1
Probab=24.94 E-value=2.7e+02 Score=26.39 Aligned_cols=54 Identities=19% Similarity=0.168 Sum_probs=38.0
Q ss_pred CcceEEeCCCCeEEEEcCccCCccCccEEEEEEEEEECCC---CCceEEEEEEEEEE--ecCC
Q psy1887 472 NSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQG---LGLRTVVPLQLTIL--DVND 529 (653)
Q Consensus 472 ~~~F~Id~~tG~i~~~~~~~lD~E~~~~~~l~V~a~D~g~---~~~~~~~~v~I~V~--DvND 529 (653)
..|...|+.++.+.- -+++.. .+.|.+.|.|++.+. ....++..+.|.|. |.||
T Consensus 46 PsWL~fd~~t~TfsG---~P~~~D-~G~~~i~VtA~~~~~~g~~~~~asdvF~I~V~ped~~e 104 (246)
T 1u2c_A 46 PSWLHWDPHSHILEG---LPLDTD-KGVHYISVSAARLGANGSHVPQTSSVFSIEVYPEDHNE 104 (246)
T ss_dssp CTTEEEETTTTEEEE---CCCGGG-CEEEEEEEEEEEECTTSCEEEEEEEEEEEEEESSCCC-
T ss_pred CcceEEcCCCCeEEe---ccCCCC-cceEEEEEEEeeccCCCCccccccceEEEEEecCCCcc
Confidence 468899999997764 345544 578999999997632 23445677888898 6665
No 78
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain, carbohydrase, horizontal gene transfer, hydrolase; NMR {Bacillus circulans} SCOP: b.1.2.1
Probab=24.64 E-value=57 Score=24.89 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=19.2
Q ss_pred EEccccCCCceEEEEEEEEECCCC
Q psy1887 172 YLDRVLVPGQVFQFRIIVKDTRGD 195 (653)
Q Consensus 172 ~l~~~le~~~~~~~~v~v~d~~g~ 195 (653)
+....|.....|.|+|+|.|..|.
T Consensus 53 ~~~~~L~~~t~Y~~~V~A~n~~G~ 76 (88)
T 1k85_A 53 ATISGLAADTSYTFTVKAKDAAGN 76 (88)
T ss_dssp EEECCCCSSCEEEEEEEEEETTTE
T ss_pred EEeCCCCCCCEEEEEEEEEeCCCC
Confidence 344566788899999999998875
No 79
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum}
Probab=23.46 E-value=2.8e+02 Score=22.10 Aligned_cols=72 Identities=13% Similarity=0.081 Sum_probs=40.6
Q ss_pred CcEEEEEEEeeCCCCCCceEEEEEEcCCCCcceEEeCCCCeEEEEcCccCCccCccEEEEEEEEEECCCCCceEEEEEEE
Q psy1887 443 GEKVVQVKATDVDTNLGGEILYTAILGYKNSSLELDAHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQL 522 (653)
Q Consensus 443 gt~v~~v~a~D~D~g~n~~i~y~i~~~~~~~~F~Id~~tG~i~~~~~~~lD~E~~~~~~l~V~a~D~g~~~~~~~~~v~I 522 (653)
+.+.+...|+|.|. .=.++.|.+ .| .....+...- .... ++-. .+.|.|.++|+|..+.. ..+..|.|
T Consensus 17 ~~v~i~a~A~D~dg-~V~kVef~v-dg---~~vg~dt~ap-y~~~----w~~~-~G~htl~a~AtD~~G~~-~tS~~v~v 84 (98)
T 3pe9_A 17 EFLKITATASDSDG-KISRVDFLV-DG---EVIGSDREAP-YEYE----WKAV-EGNHEISVIAYDDDDAA-STPDSVKI 84 (98)
T ss_dssp SEEEEEEEECCSSS-CEEEEEEEE-TT---EEEEEECSSS-EEEE----EECC-SEEEEEEEEEEETTCCB-CCCEEEEE
T ss_pred CEEEEEEEEEeCCC-CEEEEEEEE-CC---EEecccccCC-EEEE----EEcC-CccEEEEEEEEECCCCE-EeeeEEEE
Confidence 34567778888774 235778874 22 2233332111 1111 1112 58999999999976532 23456777
Q ss_pred EEEe
Q psy1887 523 TILD 526 (653)
Q Consensus 523 ~V~D 526 (653)
+|.+
T Consensus 85 tV~~ 88 (98)
T 3pe9_A 85 FVKQ 88 (98)
T ss_dssp EEEC
T ss_pred EECc
Confidence 7764
No 80
>2e7m_A Protein KIAA0319; PKD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.01 E-value=1.4e+02 Score=24.68 Aligned_cols=58 Identities=14% Similarity=0.140 Sum_probs=35.9
Q ss_pred ceEEEEEEcCCCCcceEEe-CCCCeEEEEcCccCCccCccEEEEEEEEEECCCCCceEEEEEEEEEEe
Q psy1887 460 GEILYTAILGYKNSSLELD-AHTGDITIANGQQFDREEASEYKFQVEARDMQGLGLRTVVPLQLTILD 526 (653)
Q Consensus 460 ~~i~y~i~~~~~~~~F~Id-~~tG~i~~~~~~~lD~E~~~~~~l~V~a~D~g~~~~~~~~~v~I~V~D 526 (653)
-...+++++++....-.|. +..+.+.+. .| ..+.|.|.|.++|..+ .....++|+|+.
T Consensus 47 ysyeWtli~gP~d~~~~~~~~~~~tlkLS---~L---~eG~Y~FqltVtd~~~---~ge~~vnVTV~P 105 (113)
T 2e7m_A 47 YNYEWNLISHPTDYQGEIKQGHKQTLNLS---QL---SVGLYVFKVTVSSENA---FGEGFVNVTVKP 105 (113)
T ss_dssp CCCBCCEEECCTTCCCCCCTTSSSEEEEC---SC---CSEEEEECCEEEETTE---EEECCEEEEEEC
T ss_pred EeeEEEEecCCCCCceEEecCCCCeeEec---Cc---CcEEEEEEEEEECCCC---CccceEEEEEcC
Confidence 3445677777332222232 345667664 34 4699999999999644 556667777765
No 81
>3klq_A Putative pilus anchoring protein; CNAB fold, inverse IGG fold, polyproline-II-like helix, cell; 1.90A {Streptococcus pyogenes}
Probab=21.52 E-value=3.7e+02 Score=23.16 Aligned_cols=96 Identities=7% Similarity=0.111 Sum_probs=48.4
Q ss_pred eEEEEEEEEEeecCCCCCeecccceEEEeeCCCCCCcEEEEEEEeeCCC-CCCceEEEEEEcCCCCcceEEeCCCCeEEE
Q psy1887 408 SSQAPVLVYINDVNDNPPVFTATLYTAKIPENATAGEKVVQVKATDVDT-NLGGEILYTAILGYKNSSLELDAHTGDITI 486 (653)
Q Consensus 408 s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~E~~~~gt~v~~v~a~D~D~-g~n~~i~y~i~~~~~~~~F~Id~~tG~i~~ 486 (653)
.+.+.+.|.|.-..+. | .....|++.+....+. -...++.- +++. ...+.|.|. ..| .-.+.|....|..
T Consensus 4 ~~~~~~~i~v~~~~~~-~-~~~~~Fsf~L~~~dPm-P~~~tvt~-~a~G~v~F~~i~f~-~~G--~Y~YtI~E~~G~~-- 74 (141)
T 3klq_A 4 DSTVQTSISVENVLER-A-GDSTPFSVALESIDAM-KTIEEITI-AGSGKASFSPLTFT-TVG--QYTYRVYQKPSQN-- 74 (141)
T ss_dssp -CCEEECCEEEECCSS-T-TCCCEEEEEEEETTTT-EEEEEEEE-ESSEEEECCCEEEC-SCE--EEEEEEEECCCSS--
T ss_pred ccceEEEEEEEEeccc-C-CCCceEEEEEEeCCCC-CCcEEEEE-cCCCcEEeCceEeC-CCE--EEEEEEEEeCCCC--
Confidence 4567777888777775 3 4456677777554322 11222222 2221 122233332 111 2245565544432
Q ss_pred EcCccCCccCccEEEEEEEEEECCCCCceE
Q psy1887 487 ANGQQFDREEASEYKFQVEARDMQGLGLRT 516 (653)
Q Consensus 487 ~~~~~lD~E~~~~~~l~V~a~D~g~~~~~~ 516 (653)
..+.|.. ..|.++|.++|.+...|.+
T Consensus 75 ---~gvtYD~-~~y~VtV~V~~d~~G~L~A 100 (141)
T 3klq_A 75 ---KDYQADT-TVFDVLVYVTYDEDGTLVA 100 (141)
T ss_dssp ---TTEECCC-CEEEEEEEEEECTTSCEEE
T ss_pred ---CCcEEcC-CEEEEEEEEEECCCCCEEE
Confidence 3355554 7799999999865434443
Done!